Metagenome / Metatranscriptome Family F072232

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F072232
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	87 residues
Representative Sequence	VSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPDARERMRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPAEGRPGQDADQL
Number of Associated Samples	96
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	38.02 %
% of genes near scaffold ends (potentially truncated)	41.32 %
% of genes from short scaffolds (< 2000 bps)	84.30 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (56.198 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (14.876 % of family members)
Environment Ontology (ENVO)	Unclassified (36.364 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (65.289 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.24% β-sheet: 0.00% Coil/Unstructured: 41.76%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF01546	Peptidase_M20	22.31
PF01979	Amidohydro_1	3.31
PF07690	MFS_1	1.65
PF02771	Acyl-CoA_dh_N	0.83
PF07366	SnoaL	0.83
PF03992	ABM	0.83
PF13483	Lactamase_B_3	0.83
PF13683	rve_3	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.02 %
Unclassified	root	N/A	42.98 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.02 %
Unclassified	root	N/A	42.98 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.20 %
Unclassified	root	N/A	42.98 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.98 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	8.26 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.98 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7.44 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.48 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.98 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.83 %
Bifidobacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales	0.83 %
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.98 %
Deuterostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Bifidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.98 %
Chordata	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata	0.83 %
Bifidobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.98 %
Craniata	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata	0.83 %
Bifidobacterium animalis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium animalis	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.98 %
Vertebrata	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata	0.83 %
Bifidobacterium animalis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium animalis	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.98 %
Gnathostomata	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata	0.83 %
Bifidobacterium animalis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium animalis	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.98 %
Chondrichthyes	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes	0.83 %
Bifidobacterium animalis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium animalis	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.98 %
Elasmobranchii	subclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii	0.83 %
Bifidobacterium animalis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium animalis	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.98 %
Selachii	infraclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii	0.83 %
Bifidobacterium animalis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium animalis	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.98 %
Galeomorphii	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii	0.83 %
Bifidobacterium animalis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium animalis	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.98 %
Galeoidea	superorder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea	0.83 %
Bifidobacterium animalis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium animalis	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.98 %
Orectolobiformes	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes	0.83 %
Bifidobacterium animalis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium animalis	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.98 %
Hemiscylliidae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes → Hemiscylliidae	0.83 %
Bifidobacterium animalis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium animalis	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.98 %
Chiloscyllium	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes → Hemiscylliidae → Chiloscyllium	0.83 %
Bifidobacterium animalis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium animalis	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.98 %
Chiloscyllium punctatum	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes → Hemiscylliidae → Chiloscyllium → Chiloscyllium punctatum	0.83 %
Bifidobacterium animalis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium animalis	0.83 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000878\|AL9A1W_1030542	All Organisms → cellular organisms → Bacteria	1137	Open in IMG/M
3300001565\|A35518A_1067088	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300002568\|C688J35102_120902012	All Organisms → cellular organisms → Bacteria	2153	Open in IMG/M
3300004153\|Ga0063455_101350671	Not Available	546	Open in IMG/M
3300004803\|Ga0058862_12822027	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300005329\|Ga0070683_100098861	All Organisms → cellular organisms → Bacteria	2746	Open in IMG/M
3300005329\|Ga0070683_100194588	All Organisms → cellular organisms → Bacteria	1925	Open in IMG/M
3300005329\|Ga0070683_101410114	Not Available	669	Open in IMG/M
3300005336\|Ga0070680_100137928	All Organisms → cellular organisms → Bacteria	2044	Open in IMG/M
3300005337\|Ga0070682_100687902	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300005338\|Ga0068868_100085264	All Organisms → cellular organisms → Bacteria	2538	Open in IMG/M
3300005338\|Ga0068868_101195304	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300005341\|Ga0070691_10367870	Not Available	802	Open in IMG/M
3300005354\|Ga0070675_101440409	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300005435\|Ga0070714_100170860	All Organisms → cellular organisms → Bacteria	1973	Open in IMG/M
3300005436\|Ga0070713_101976693	Not Available	566	Open in IMG/M
3300005437\|Ga0070710_10338243	Not Available	993	Open in IMG/M
3300005437\|Ga0070710_10691393	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300005438\|Ga0070701_11164593	Not Available	545	Open in IMG/M
3300005439\|Ga0070711_100509147	Not Available	994	Open in IMG/M
3300005439\|Ga0070711_102015052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium animalis	508	Open in IMG/M
3300005444\|Ga0070694_101746726	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300005455\|Ga0070663_101140673	Not Available	683	Open in IMG/M
3300005458\|Ga0070681_11555009	Not Available	586	Open in IMG/M
3300005530\|Ga0070679_100030700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5307	Open in IMG/M
3300005535\|Ga0070684_100524053	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300005535\|Ga0070684_101218477	Not Available	708	Open in IMG/M
3300005547\|Ga0070693_100438955	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300005549\|Ga0070704_100528321	Not Available	1028	Open in IMG/M
3300005549\|Ga0070704_100806994	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300005563\|Ga0068855_100115438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3078	Open in IMG/M
3300005563\|Ga0068855_101663281	Not Available	652	Open in IMG/M
3300005578\|Ga0068854_101022977	Not Available	732	Open in IMG/M
3300005587\|Ga0066654_10446225	Not Available	707	Open in IMG/M
3300005614\|Ga0068856_100102098	All Organisms → cellular organisms → Bacteria	2861	Open in IMG/M
3300005615\|Ga0070702_101555638	Not Available	546	Open in IMG/M
3300005616\|Ga0068852_100649138	Not Available	1063	Open in IMG/M
3300006028\|Ga0070717_10033248	All Organisms → cellular organisms → Bacteria	4160	Open in IMG/M
3300006046\|Ga0066652_102039143	Not Available	510	Open in IMG/M
3300006755\|Ga0079222_10026064	All Organisms → cellular organisms → Bacteria	2427	Open in IMG/M
3300006800\|Ga0066660_10556219	All Organisms → cellular organisms → Bacteria	962	Open in IMG/M
3300006804\|Ga0079221_10170197	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
3300006871\|Ga0075434_101366054	Not Available	719	Open in IMG/M
3300007076\|Ga0075435_100136860	All Organisms → cellular organisms → Bacteria	2052	Open in IMG/M
3300009093\|Ga0105240_10363446	Not Available	1639	Open in IMG/M
3300009093\|Ga0105240_11608949	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300009098\|Ga0105245_10256049	All Organisms → cellular organisms → Bacteria	1702	Open in IMG/M
3300009101\|Ga0105247_11275615	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300009545\|Ga0105237_12475662	Not Available	529	Open in IMG/M
3300010152\|Ga0126318_10525637	All Organisms → cellular organisms → Bacteria	1326	Open in IMG/M
3300010152\|Ga0126318_11062796	All Organisms → cellular organisms → Bacteria	1040	Open in IMG/M
3300010362\|Ga0126377_11389004	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300010371\|Ga0134125_10027590	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6326	Open in IMG/M
3300010371\|Ga0134125_10112962	All Organisms → cellular organisms → Bacteria	3024	Open in IMG/M
3300010371\|Ga0134125_10843847	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300010371\|Ga0134125_12244794	Not Available	593	Open in IMG/M
3300010371\|Ga0134125_12687716	Not Available	541	Open in IMG/M
3300010371\|Ga0134125_12695632	Not Available	540	Open in IMG/M
3300010373\|Ga0134128_10284228	All Organisms → cellular organisms → Bacteria	1854	Open in IMG/M
3300010375\|Ga0105239_10125885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2848	Open in IMG/M
3300010396\|Ga0134126_10099950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3566	Open in IMG/M
3300010396\|Ga0134126_10779374	Not Available	1082	Open in IMG/M
3300010396\|Ga0134126_11013178	Not Available	929	Open in IMG/M
3300011119\|Ga0105246_10286735	All Organisms → cellular organisms → Bacteria	1323	Open in IMG/M
3300011998\|Ga0120114_1078189	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300012961\|Ga0164302_10463115	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300012961\|Ga0164302_10950403	Not Available	665	Open in IMG/M
3300012971\|Ga0126369_12617021	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300012988\|Ga0164306_10947746	Not Available	705	Open in IMG/M
3300013100\|Ga0157373_10358912	All Organisms → cellular organisms → Bacteria	1040	Open in IMG/M
3300013102\|Ga0157371_10894256	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300013104\|Ga0157370_10812756	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300013105\|Ga0157369_11908979	Not Available	603	Open in IMG/M
3300013296\|Ga0157374_12401602	Not Available	554	Open in IMG/M
3300013297\|Ga0157378_11416175	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300014052\|Ga0120109_1086736	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300014326\|Ga0157380_10673762	Not Available	1035	Open in IMG/M
3300014823\|Ga0120170_1062095	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300014969\|Ga0157376_10983303	Not Available	866	Open in IMG/M
3300015371\|Ga0132258_10098395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6882	Open in IMG/M
3300015371\|Ga0132258_10244949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4378	Open in IMG/M
3300017792\|Ga0163161_10372836	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes → Hemiscylliidae → Chiloscyllium → Chiloscyllium punctatum	1139	Open in IMG/M
3300017974\|Ga0187777_11032243	Not Available	596	Open in IMG/M
3300018431\|Ga0066655_10242032	Not Available	1146	Open in IMG/M
3300018433\|Ga0066667_11578748	Not Available	583	Open in IMG/M
3300020069\|Ga0197907_11373415	Not Available	671	Open in IMG/M
3300020070\|Ga0206356_10806817	Not Available	1040	Open in IMG/M
3300020070\|Ga0206356_10857001	Not Available	850	Open in IMG/M
3300020077\|Ga0206351_10592549	All Organisms → cellular organisms → Bacteria	1352	Open in IMG/M
3300020081\|Ga0206354_11146602	Not Available	987	Open in IMG/M
3300020082\|Ga0206353_11097443	All Organisms → cellular organisms → Bacteria	1507	Open in IMG/M
3300021445\|Ga0182009_10379409	Not Available	727	Open in IMG/M
3300022467\|Ga0224712_10047750	Not Available	1649	Open in IMG/M
3300022467\|Ga0224712_10535788	Not Available	568	Open in IMG/M
3300025509\|Ga0208848_1064393	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300025898\|Ga0207692_10066006	All Organisms → cellular organisms → Bacteria	1890	Open in IMG/M
3300025898\|Ga0207692_10524769	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300025905\|Ga0207685_10478208	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300025912\|Ga0207707_10850315	Not Available	757	Open in IMG/M
3300025913\|Ga0207695_10300453	Not Available	1497	Open in IMG/M
3300025913\|Ga0207695_11703586	Not Available	511	Open in IMG/M
3300025916\|Ga0207663_10598433	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300025917\|Ga0207660_10115723	All Organisms → cellular organisms → Bacteria	2024	Open in IMG/M
3300025928\|Ga0207700_10623542	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300025932\|Ga0207690_11603373	Not Available	544	Open in IMG/M
3300025949\|Ga0207667_10693957	Not Available	1021	Open in IMG/M
3300025949\|Ga0207667_11660538	Not Available	606	Open in IMG/M
3300025981\|Ga0207640_10282488	Not Available	1304	Open in IMG/M
3300026023\|Ga0207677_10012527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4879	Open in IMG/M
3300026078\|Ga0207702_10296288	All Organisms → cellular organisms → Bacteria	1534	Open in IMG/M
3300026088\|Ga0207641_11507566	Not Available	674	Open in IMG/M
3300026142\|Ga0207698_11881639	Not Available	613	Open in IMG/M
3300026300\|Ga0209027_1097436	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1057	Open in IMG/M
3300027765\|Ga0209073_10390802	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300027775\|Ga0209177_10042783	All Organisms → cellular organisms → Bacteria	1250	Open in IMG/M
3300028828\|Ga0307312_10843718	Not Available	607	Open in IMG/M
3300031938\|Ga0308175_101307414	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300031938\|Ga0308175_103216349	Not Available	506	Open in IMG/M
3300031939\|Ga0308174_10030462	All Organisms → cellular organisms → Bacteria	3470	Open in IMG/M
3300031996\|Ga0308176_10263589	All Organisms → cellular organisms → Bacteria	1660	Open in IMG/M
3300032892\|Ga0335081_11359682	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	66.94%
Host-Associated	Host-Associated	33.06%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.29%
Plants	Host-Associated → Plants	32.23%
Aquatic	Environmental → Aquatic	1.65%
Human	Host-Associated → Human	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.29%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.18%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.05%
Freshwater	Environmental → Aquatic → Freshwater	1.65%
Digestive System	Host-Associated → Human → Digestive System	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.19%
Loam	Environmental → Terrestrial → Soil → Loam	26.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.70%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.40%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.48%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.65%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.65%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.83%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	24.79%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.40%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.31%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.48%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.65%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.65%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.83%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	14.88%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	9.09%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	8.26%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	8.26%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	6.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.96%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	4.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.31%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.48%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.48%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.65%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.83%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000878	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-5 cm-9A)- 1 week illumina	Environmental	Open in IMG/M
3300001565	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A35-5cm-18A)- 1 week illumina new	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011998	Permafrost microbial communities from Nunavut, Canada - A30_35cm_6M	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014052	Permafrost microbial communities from Nunavut, Canada - A23_35cm_12M	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014823	Permafrost microbial communities from Nunavut, Canada - A3_80cm_0M	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020077	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025509	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AL9A1W_10305421	3300000878	Permafrost	VSLTASMEPLIVALVAVGALVVLMFVLLHVGVRTWRALAPATRERIRRRRDVRRGIREIEAFLAGPGAEPWSDEHTGPTEGRPGQDAD*
A35518A_10670881	3300001565	Permafrost	MEPLIVALVAVGALVVLMFVLLHVGVRTWRALAPATRERIRRRRDVRRGIREIEAFLAGPGAEPWSDEHTGPTEGRPGQDAD*
C688J35102_1209020121	3300002568	Soil	VSLTASMEPLIVALVAVTALVVLMFALVHVGMRAWRAAAPDARERLRRRRDVRRGIREIEAFLAGPGLDPREDEHHAGPAEGRPGGDADQL*
Ga0063455_1013506711	3300004153	Soil	AVTALVVLMFALVHVGMRAWRAAAPDARERLRRRRDVRRGIREIEAFLAGPGLDPREDEHHAGPAEGRPGGDADQL*
Ga0058862_128220271	3300004803	Host-Associated	VSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRVVAPDARERMRRRRDVRRGIREIEAFLAGPGLEPWNDEID
Ga0070683_1000988614	3300005329	Corn Rhizosphere	VSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPGARERMRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGQDADQI*
Ga0070683_1001945881	3300005329	Corn Rhizosphere	GSTDGDGTVSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPAEGRPGGDADPL*
Ga0070683_1014101142	3300005329	Corn Rhizosphere	DGDGTVSLTASMEPLIVALVAVAALVVLMFVLVHVGMRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLDPWEDEHHAGPAEGRPGGDADQL*
Ga0070680_1001379282	3300005336	Corn Rhizosphere	VSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRVVAPDARERMRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGQDADQI*
Ga0070682_1006879022	3300005337	Corn Rhizosphere	VSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPAEGRPGGDADPL*
Ga0068868_1000852641	3300005338	Miscanthus Rhizosphere	MFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGIEPWSDEHHTGPAEGRPGQDADQL*
Ga0068868_1011953041	3300005338	Miscanthus Rhizosphere	VSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPAEGRP
Ga0070691_103678702	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	VSLTASMEPLIVALVAVAALVVLMFVLVHVGMRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLDPWEDEHHAGPAEGRPGGDADQL*
Ga0070675_1014404092	3300005354	Miscanthus Rhizosphere	VSLTASMEPLIVALVAVTALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGIEPWSDEHHTGPAEGRPGQ
Ga0070714_1001708602	3300005435	Agricultural Soil	VSLTASMEPLIVALVAVAALVVLMFVLVHMGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGIEPWSDEHHTGPAEGRPGQDADL*
Ga0070713_1019766932	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRTVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPAEGRPGQDADQL*
Ga0070710_103382432	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MEPLIVALVAVAALVVLMFALLHMGVRAWRTVAPDARERIRHKRDVRRGIREIEAFLAGAGSTPWSDEHAGPAEGRQGQDSD*
Ga0070710_106913932	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSLTASMEPLIVALVAVAALVILMFVLLHLGARTWRTIAPDARERIRRRRDVRRGIREIEAFLADAGSEHWSDEHAGPAEGRQGQDD*
Ga0070701_111645931	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	LMFVLVHVGMRAWRTVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPAEGRPGGDADPL*
Ga0070711_1005091472	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MEPLIVALVAVAALVVLVFAFLHLGVRAWRTVAPDARERIRRRRDVRRGIREIEAFLAGPGSTPWSDEHAGPTEGRQGQDSD*
Ga0070711_1020150521	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSLTASMEPLIVALVAVAALVVLMFALLHVGVRAWRTLAPDARERIRRRRDIRRGIREIEAFLAGAESTPWSDEHTGPTEGRQSQDSD*
Ga0070694_1017467261	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	VSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGQDADQI*
Ga0070663_1011406731	3300005455	Corn Rhizosphere	MEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPGARERMRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPAEGRPGGDADPL*
Ga0070681_115550092	3300005458	Corn Rhizosphere	STDGDGTVSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRVVAPDARERMRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGQDADQI*
Ga0070679_1000307002	3300005530	Corn Rhizosphere	VSLTASMEPLIVALVAVAALVVLVFVLVHLGLRTWRAVAPGARERMRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGGDADPL*
Ga0070684_1005240531	3300005535	Corn Rhizosphere	GDGTVSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPGARERMRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGQDADQI*
Ga0070684_1012184772	3300005535	Corn Rhizosphere	MFVLVHVGMRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLDPWEDEHHAGPAEGRPGGDADQL*
Ga0070693_1004389552	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	VSLTASMEPLIVALVAVTALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGIEPWSDEHHTGPAERRPGQDADQL*
Ga0070704_1005283211	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MEPLIVALVAVTALVVLMFVLVQVGMRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPAEGRPGQDADQL*
Ga0070704_1008069942	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPGARERMRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGQDADQ
Ga0068855_1001154384	3300005563	Corn Rhizosphere	TDGDGTVSLTASMEPLIVALVAVAALVVLVFVLVHLGLRTWRAVAPGARERMRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGGDADPL*
Ga0068855_1016632812	3300005563	Corn Rhizosphere	GTVSLTASMEPLIVALVAVTALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGIEPWSDEHHTGPAEGRPGQDADQL*
Ga0068854_1010229772	3300005578	Corn Rhizosphere	VSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPGARERMRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGGDADPL*
Ga0066654_104462252	3300005587	Soil	GTVSLTASMEPLIVALVAVAALVVLMFVLVHLGMRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPAEGRPGQDADQI*
Ga0068856_1001020982	3300005614	Corn Rhizosphere	VSLTASMEPLIVALVAVTALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGIEPWSDEHHTGPAEGRPGQDADQL*
Ga0070702_1015556382	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	ALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGIEPWSDEHHTGPAEGRPGQDADQL*
Ga0068852_1006491383	3300005616	Corn Rhizosphere	VSLTASMEPLIVALVAVAALVVLVFVLVHLGLRTWRAVAPGARERMRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGQDADQI*
Ga0070717_100332485	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MEPLIVALVAVAALVVLMFAFLHVGLRAWRAVAPDARERIRRRRDIRRGIREIEAFLAGPGSTPWSDEHAGPTEGRQGQDSD*
Ga0066652_1020391432	3300006046	Soil	GTVSLTASMEPLIVALVAVAALVVLMFVLVHLGMRTWRAVAPDARERLRRRRDVRRGMREIEAFLAGSGLEPWSDEHHTGPAEGRPGQDADQI*
Ga0079222_100260643	3300006755	Agricultural Soil	MEPLIVALVAVAALVVLMFVLVHVGMRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLDPWEDEHHAGPAEGRPGGDADQL*
Ga0066660_105562192	3300006800	Soil	MKPYIGTVSLTASVEPLIVALVAVAAVVLATFVVVHIGLRTWRAAAPDIRERIRRRRAVRRGIREIEAFLAGPGIAPWSDEPAGPAEGMSGQDKDS*
Ga0079221_101701972	3300006804	Agricultural Soil	VSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPDARERMRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPAEGRPGQDADQL*
Ga0075434_1013660541	3300006871	Populus Rhizosphere	IVALVAVAALVVLMFVLVHLGMRTWRTVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWSDEHHAGPAEGRGGDADQL*
Ga0075435_1001368601	3300007076	Populus Rhizosphere	MEPLIVALVAVAALVVLMFVLVHLGMRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWSDEHHAGPAEGRPGQDADQL*
Ga0105240_103634461	3300009093	Corn Rhizosphere	MEPLIVALVAVAALVVLVFVLVHLGLRTWRAVAPGARERMRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGGDADPL*
Ga0105240_116089491	3300009093	Corn Rhizosphere	MEPLIVALVAVTALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGIEPWSDEHHTGPAEGRPGQDADQL*
Ga0105245_102560493	3300009098	Miscanthus Rhizosphere	MEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPAEGRPGGDADPL*
Ga0105247_112756152	3300009101	Switchgrass Rhizosphere	MEPLIVALVAVTALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGIEPWSDEHYTGPVEDRPDQ
Ga0105237_124756621	3300009545	Corn Rhizosphere	GSTDGDGTVSLTASMEPLIVALVAVAALVVLVFVLVHLGLRTWRAVAPGARERMRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGGDADPL*
Ga0126318_105256372	3300010152	Soil	MEPLIVALVAVAALVVLMFVLVHVGMKTWRALAPDARERLRRRRDVRRGIREIEAFLAGPGLDPWEDEHHAGPAEGRGGDADQL*
Ga0126318_110627962	3300010152	Soil	MEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPGARERMRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGQDADQI*
Ga0126377_113890042	3300010362	Tropical Forest Soil	MEPLIVALVAVAALVVLMFVLVHLGMRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLDPWEDEHQAGPAEGRPGGDADQL*
Ga0134125_100275906	3300010371	Terrestrial Soil	MEPLIVALVAVAALVVLMFVLVHMGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGIEPWSDEHHTGPAEGRPGQDADL*
Ga0134125_101129621	3300010371	Terrestrial Soil	MEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPDARERMRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPAEGRPGQDADQI*
Ga0134125_108438472	3300010371	Terrestrial Soil	MEPLIVALVAVAALVVLMFVLVHLGLRTWRVVAPDARERMRRRRDVRRGIREIEAFLAGPGLDPWEDEHHAGPAEGRPGGDADPL*
Ga0134125_122447942	3300010371	Terrestrial Soil	MEPLIVALVAVTALVVLMFVLVQVGMRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWDDEHTGPAEGRPGQDADQL*
Ga0134125_126877162	3300010371	Terrestrial Soil	GDGTVSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPAEGRPGGDADPL*
Ga0134125_126956322	3300010371	Terrestrial Soil	VSLTASMEPLIVALVAVAALVVLMFVLVHMGMRTWRAVAPDARERMRRRRDVRRGIREIEAFLAGPGLEPRDDEHHTGPAEGRPGQDADQL*
Ga0134128_102842283	3300010373	Terrestrial Soil	MEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPDARERMRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPAEGRPGQDADQL*
Ga0105239_101258855	3300010375	Corn Rhizosphere	VAVAALVVLVFVLVHLGLRTWRAVAPGARERMRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGGDADPL*
Ga0134126_100999505	3300010396	Terrestrial Soil	MEPLIVALVAVAALVVLMFVLVHMGMRTWRAVAPDARERMRRRRDVRRGIREIEAFLAGPGLEPRDDEHHTGPAEGRPGQDADQL*
Ga0134126_107793743	3300010396	Terrestrial Soil	VLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLDPWEDEHHAGPAEGRPGGDADQL*
Ga0134126_110131781	3300010396	Terrestrial Soil	AVAALVVLMFVLVHLGLRTWRAVAPDARERMRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPAEGRPGQDADQL*
Ga0105246_102867351	3300011119	Miscanthus Rhizosphere	MEPLIVALVAVTALVVLMFVLVHMGLRMWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPAEGRPGQDADQ
Ga0120114_10781891	3300011998	Permafrost	MEPLIVALVAVGALVVLMFVLLHVGVRTWRALATATRERIRRRRDVRRGIREIEAFLAGPGAEPWSDEHTGPTEGRPGQDAD*
Ga0164302_104631151	3300012961	Soil	MEPLIVALVAVAALVVLMFALLHMGVRAWRTVAPDARERIRRKRDVRRGIREIEAFLAGAGSTPWSDEHAGPAEGRQGQDSD*
Ga0164302_109504032	3300012961	Soil	VALVAVAALVVLMFVLVHMGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGIEPWSDEHHTGPAEGRPGQDADL*
Ga0126369_126170211	3300012971	Tropical Forest Soil	MEPLIVALVAVAALVVLMFVLVHLGMRTWRAVAPDARERLRRRRDVRRGIREIEALLAGPGLDPWEDEHHAGPAEGRPGGDADQL*
Ga0164306_109477461	3300012988	Soil	ALVVVMFVLLHLGLRAWRRFGPELRERIRRRRDIRRGIREIEAFLAGPGLEPWDDEHTGPAEGRPGQDAD*
Ga0157373_103589123	3300013100	Corn Rhizosphere	MEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGIEPWSDEHHTGPAEGRTGQDADQL*
Ga0157371_108942561	3300013102	Corn Rhizosphere	MEPLIVALVAVTALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGIEPWSDEHHTG
Ga0157370_108127562	3300013104	Corn Rhizosphere	MEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPGARERMRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGGDADPL*
Ga0157369_119089792	3300013105	Corn Rhizosphere	MEPLIVALVAVAALVVLVFVLVHLGLRTWRAVAPGARERMRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGQDADQI*
Ga0157374_124016021	3300013296	Miscanthus Rhizosphere	MEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLDPWEDEHHAGPAEGRPGGDADQL*
Ga0157378_114161751	3300013297	Miscanthus Rhizosphere	MEPLIVALVAVTALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPAEGRPGQDADQL*
Ga0120109_10867362	3300014052	Permafrost	MEPLIVALVAVAALVVLMFVLLHVGVRTWRALAPATRERIRRRRDVRRGIREIEAFLAGPGAEPWSDEHTGPTEGRPGQDAD*
Ga0157380_106737623	3300014326	Switchgrass Rhizosphere	AVAALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWDDEHTGPAEGRPGQDADQL*
Ga0120170_10620952	3300014823	Permafrost	MEPLIVALVAVAALVVLMFALLHVGVRTWRALAPATRERIRRRRDVRRGIREIEAFLAGPGAEPWSDEHTGPTEGRPGQDAD*
Ga0157376_109833032	3300014969	Miscanthus Rhizosphere	MEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGIEPWSDEHHTGPAEGRPGQDADQL*
Ga0132258_100983951	3300015371	Arabidopsis Rhizosphere	MEPLMVALVAIAALVVVMFVLLHLGLRAWRRFGPELRERIRRRRDIRRGIREIEAFLAGPGAEPWSDEHTGPAEGRPGQDAD*
Ga0132258_102449495	3300015371	Arabidopsis Rhizosphere	MEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPAEGRPGQDADQL*
Ga0163161_103728361	3300017792	Switchgrass Rhizosphere	VAALVVLMFVLVHVGMRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWDDEHTGPAEGRPGQDADQL
Ga0187777_110322431	3300017974	Tropical Peatland	MSLTASMEPLIVALVAVAGLVILMFVLLHLGARTWRTIAPDARERLRRRRDVRRGIREIEAFLADAGSEHWSDEHAGPTEGRQDSD
Ga0066655_102420323	3300018431	Grasslands Soil	VSLTASMEPLIVALVAVTALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGIEPWSDEHHAGPAEGRPGQDADQL
Ga0066667_115787482	3300018433	Grasslands Soil	VSLTASMEPLIVALVAVAALVVLMFLLVHLGLRTWRAVAPDARERLRRRRDVRRGMREIEAFLAGPGLEPWSDEHHTGPAEGRPGQDADQL
Ga0197907_113734151	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	VSLTASMEPLIVALVAVAALVVLVFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGGDADPL
Ga0206356_108068171	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	STDGDGTVSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPGARERMRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGGDADPL
Ga0206356_108570013	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	TDGDGTVSLTASMEPLIVALVAVAALVVLMFVLVHVGMRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLDPWEDEHHAGPAEGRPGGDADQL
Ga0206351_105925492	3300020077	Corn, Switchgrass And Miscanthus Rhizosphere	VSLTASMEPLIVALVAVTALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGGDADPL
Ga0206354_111466021	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	RGSTDGDGTVSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPAEGRPGGDADPL
Ga0206353_110974433	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	VSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPAEGRPGGDADPL
Ga0182009_103794091	3300021445	Soil	DGTVSLTASMEPLIVALVAVAALVVLMFVLVHVGMRAWRTVAPDARERLRRRRDVRRGIREIEAFLAGPGLDPWEDEHHAGPAEGRPGGDADQL
Ga0224712_100477501	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	TDGDGTVSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPGARERMRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGQDADQI
Ga0224712_105357881	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	TDGNGTVSLTASMEPLIVALVAVAALVVLMFVLVHVGMRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPAEGRPGGDADPL
Ga0208848_10643931	3300025509	Arctic Peat Soil	VSLTASMEPLIVALVAVVALVVLMFVLLHVGVRAWRALAPDARERIRRRRDVRRGIREIEAFLAGPDAAPWSDEHTGPAEGRPGQDAD
Ga0207692_100660062	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	VSLTASMEPLIVALVAVAALVVLMFVLVHMGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGIEPWSDEHHTGPAEGRPGQDADL
Ga0207692_105247692	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MSLTASMEPLIVALVAVAALVILMFVLLHLGARTWRTIAPDARERIRRRRDVRRGIREIEAFLADAGSEHWSDEHAGPAEGRQGQDD
Ga0207685_104782081	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	VSLTASMEPLIVALVAVAALVVLMFALLHVGVRAWRTLAPDARERIRRRRDIRRGIREIEAFLAGAESTPWSDEHTGPTEGRQSQDSD
Ga0207707_108503151	3300025912	Corn Rhizosphere	VSLTASMEPLIVALVAVAALVVLVFVLVHLGLRTWRAVAPGARERMRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGQDADQI
Ga0207695_103004531	3300025913	Corn Rhizosphere	VSLTASMEPLIVALVAVAALVVLVFVLVHLGLRTWRAVAPGARERMRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGGDADPL
Ga0207695_117035861	3300025913	Corn Rhizosphere	LTASMEPLIVALVAVAALVVLMFVLVHVGMRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLDPWEDEHHAGPAEGRPGGDADQL
Ga0207663_105984332	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRTVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPAEGRPG
Ga0207660_101157232	3300025917	Corn Rhizosphere	VSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPGARERMRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGGDADPL
Ga0207700_106235422	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRTVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPSSDEHHTGPAEGRPGQDADQL
Ga0207690_116033731	3300025932	Corn Rhizosphere	EPLIVALVAVAALVVLMFVLVHVGMRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLDPWEDEHHAGPAEGRPGGDADQL
Ga0207667_106939573	3300025949	Corn Rhizosphere	TDGNGTVSLTASMEPLIVALVAVAALVVLMFVLVHVGMRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLDPWEDEHHAGPAEGRPGGDADQL
Ga0207667_116605382	3300025949	Corn Rhizosphere	VAVTALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGIEPWSDEHHTGPAEGRPGQDADQL
Ga0207640_102824883	3300025981	Corn Rhizosphere	RRGSTDGDGTVSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPGARERMRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGGDADPL
Ga0207677_100125272	3300026023	Miscanthus Rhizosphere	VSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGIEPWSDEHHTGPAEGRPGQDADQL
Ga0207702_102962882	3300026078	Corn Rhizosphere	VSLTASMEPLIVALVAVTALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGIEPWSDEHHTGPAEGRPGQDADQL
Ga0207641_115075661	3300026088	Switchgrass Rhizosphere	LVAVTALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGIEPWSDEHHTGPAERRPGQDADQL
Ga0207698_118816391	3300026142	Corn Rhizosphere	TRRRRGSTDGDGTVLLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPGARERMRRRRDVRRGIREIEAFLAGPGLEPWNDEHHTGPAEGRPGQDADQI
Ga0209027_10974362	3300026300	Grasslands Soil	MSRRILIPLAVVAALVVLMFVLVHLGMRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPAEGRPGQDADQI
Ga0209073_103908021	3300027765	Agricultural Soil	VSLTASMEPLIVALVAVAALVVLMFVLVHLGLRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLEPWSDEHHTGPA
Ga0209177_100427833	3300027775	Agricultural Soil	MEPLIVALVAVAALVVLMFVLVHVGMRTWRAVAPDARERLRRRRDVRRGIREIEAFLAGPGLDPWEDEHHAGPAEGRPGGDADQL
Ga0307312_108437181	3300028828	Soil	LTASMEPLIVALVAVTALVVLMFVLVHVGLRTWRAVAPDARERLRRRRDVRRGLREIEAFLAGPGLEPWDDEHAGPAEGRPGQDADQL
Ga0308175_1013074142	3300031938	Soil	VSLTASMEPLIVALVAVAALVVLMFVLVHMGMRTWRAVAPDARERMRRRRDVRRGIREIEAFLAGPGLEPRDDEHHTGPAEGRPGQDADQL
Ga0308175_1032163492	3300031938	Soil	VSLTASMEPLIVALVAVAALVVLMFALVHVGMRAWRAAAPDARERLRRRRDVRRGIREIEAFLAGPGLDPREDEHHAGPAEGRPGGDADQL
Ga0308174_100304624	3300031939	Soil	VSLTASMEPLIVALVAVAALVVLVFVLVHMGMRTWRAVAPDARERMRRRRDVRRGIREIEAFLAGPGLEPRDDEHHTGPAEGRPGQDADQL
Ga0308176_102635892	3300031996	Soil	VSLTASMEPLIVALVAVAALVVLMFVLVHIGMRTWRSVAPDARERLRRRRDVRRGIREIEAFLAGPGVDPWEDEHQPGPAEGRPGGDTDQL
Ga0335081_113596821	3300032892	Soil	MSLTASMEPLIVALVAVAGLVILMFVLLHLGARTWRTIGPDARERLRRRRDARRGIREIEAFLADAGSEHWSDEHAGPTEG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072232

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences