NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F072223

Metagenome / Metatranscriptome Family F072223

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F072223
Family Type Metagenome / Metatranscriptome
Number of Sequences 121
Average Sequence Length 61 residues
Representative Sequence SVKFATFFQTRFENYTTSCTGPSPSGLPVPCREERIAAITSNQVKVLKPKPKKKHR
Number of Associated Samples 111
Number of Associated Scaffolds 121

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 108
AlphaFold2 3D model prediction Yes
3D model pTM-score0.16

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(34.711 % of family members)
Environment Ontology (ENVO) Unclassified
(38.843 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(56.198 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 23.81%    Coil/Unstructured: 76.19%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.16
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 121 Family Scaffolds
PF00581Rhodanese 85.95
PF03625DUF302 4.13
PF12697Abhydrolase_6 2.48
PF00043GST_C 1.65
PF13417GST_N_3 0.83
PF00730HhH-GPD 0.83
PF13561adh_short_C2 0.83
PF00583Acetyltransf_1 0.83
PF04140ICMT 0.83

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 121 Family Scaffolds
COG3439Uncharacterized conserved protein, DUF302 familyFunction unknown [S] 4.13
COG0435Glutathionyl-hydroquinone reductaseEnergy production and conversion [C] 1.65
COG0625Glutathione S-transferasePosttranslational modification, protein turnover, chaperones [O] 1.65
COG01223-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylaseReplication, recombination and repair [L] 0.83
COG0177Endonuclease IIIReplication, recombination and repair [L] 0.83
COG1059Thermostable 8-oxoguanine DNA glycosylaseReplication, recombination and repair [L] 0.83
COG1194Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairsReplication, recombination and repair [L] 0.83
COG22313-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamilyReplication, recombination and repair [L] 0.83


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Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil34.71%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil6.61%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.96%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.96%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil3.31%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil3.31%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.48%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.48%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere2.48%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.48%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.48%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.65%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.65%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.65%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.65%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.65%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.65%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.65%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.83%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil0.83%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.83%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost0.83%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.83%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.83%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.83%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.83%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.83%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.83%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.83%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.83%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.83%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.83%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2067725004Soil microbial communities from Great Prairies - Kansas Corn soilEnvironmentalOpen in IMG/M
2140918013Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)EnvironmentalOpen in IMG/M
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300001536Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005718Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2Host-AssociatedOpen in IMG/M
3300005834Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2Host-AssociatedOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006953Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010039Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56EnvironmentalOpen in IMG/M
3300010042Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105BEnvironmentalOpen in IMG/M
3300010045Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012485Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.7.old.040610Host-AssociatedOpen in IMG/M
3300012895Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2EnvironmentalOpen in IMG/M
3300012896Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2EnvironmentalOpen in IMG/M
3300012900Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1EnvironmentalOpen in IMG/M
3300012903Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1EnvironmentalOpen in IMG/M
3300012907Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1EnvironmentalOpen in IMG/M
3300012913Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2EnvironmentalOpen in IMG/M
3300012915Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300015201Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300018054Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1EnvironmentalOpen in IMG/M
3300018071Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1EnvironmentalOpen in IMG/M
3300018076Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coexEnvironmentalOpen in IMG/M
3300019875Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2EnvironmentalOpen in IMG/M
3300019877Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1EnvironmentalOpen in IMG/M
3300020070Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300021078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redoEnvironmentalOpen in IMG/M
3300021344Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2EnvironmentalOpen in IMG/M
3300022694Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coexEnvironmentalOpen in IMG/M
3300023066Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S223-509R-6EnvironmentalOpen in IMG/M
3300023263Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6EnvironmentalOpen in IMG/M
3300024178Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK35EnvironmentalOpen in IMG/M
3300024187Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK13EnvironmentalOpen in IMG/M
3300024246Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK21EnvironmentalOpen in IMG/M
3300024284Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK12EnvironmentalOpen in IMG/M
3300024288Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungalEnvironmentalOpen in IMG/M
3300024331Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09EnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026731Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A4-10 (SPAdes)EnvironmentalOpen in IMG/M
3300027695Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)Host-AssociatedOpen in IMG/M
3300028065Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK26EnvironmentalOpen in IMG/M
3300028707Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148EnvironmentalOpen in IMG/M
3300028715Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203EnvironmentalOpen in IMG/M
3300028716Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198EnvironmentalOpen in IMG/M
3300028721Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355EnvironmentalOpen in IMG/M
3300028744Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367EnvironmentalOpen in IMG/M
3300028754Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157EnvironmentalOpen in IMG/M
3300028755Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356EnvironmentalOpen in IMG/M
3300028768Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119EnvironmentalOpen in IMG/M
3300028782Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193EnvironmentalOpen in IMG/M
3300028791Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144EnvironmentalOpen in IMG/M
3300028793Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159EnvironmentalOpen in IMG/M
3300028809Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48EnvironmentalOpen in IMG/M
3300028810Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151EnvironmentalOpen in IMG/M
3300028812Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48EnvironmentalOpen in IMG/M
3300028814Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300028824Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197EnvironmentalOpen in IMG/M
3300028872Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204EnvironmentalOpen in IMG/M
3300028876Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140EnvironmentalOpen in IMG/M
3300028880Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181EnvironmentalOpen in IMG/M
3300028881Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116EnvironmentalOpen in IMG/M
3300030511Bulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)EnvironmentalOpen in IMG/M
3300031562Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300032013Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032179Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2EnvironmentalOpen in IMG/M
3300033550Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4EnvironmentalOpen in IMG/M
3300034819Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
GPKC_086589902067725004SoilGGTGKRIALSAKLPASGKYSIARPNVKFATFFQTRFENYTTPCTGSLPGLPVVPCREERIAAITSNQLKVLKPKKKHR
Iowa-Corn-GraphCirc_026887902140918013SoilVKFTTFFQTRFENYITTCTGPSPSGLPVPCKGEDLAAMTSNQVKATKPKRR
JGI10214J12806_1216152523300000891SoilGKYTLARPNVKFATFFQTRFENYTTSCTGPSPSGLPVKCREERIAAVTSNQVKVLKPKKKHHK*
A1565W1_1019992523300001536PermafrostRTFFQMRFENFGIDCIGPSPSGLPVPCNGEDLAAMDSTQIKVLPPPRRR*
C688J35102_12024014723300002568SoilPKTGKYTLTRPNVKFATYFQARFENYTTPCTGPSPTGQTIPKGCREERIAAVTSNQLRVVKPKPKKKHHR*
Ga0070682_10019733133300005337Corn RhizosphereSPVLKATGKYTILRPNVKFATFFQTRFENYTTDCTGPSPSGQPIPCREERIAAITSNQVKVLKPPRKKHR*
Ga0070691_1058734513300005341Corn, Switchgrass And Miscanthus RhizosphereFATFFQARFENYATPCTGASPTGVVGIKCIGEDIAAVTSNQVKATKPRKR*
Ga0070713_10099323523300005436Corn, Switchgrass And Miscanthus RhizosphereKATGKYTILRPNVKFATFFQTRFENYTTDCTGPSPSGQPIPCREERIAAITSNQVKVLKPPRKKHR*
Ga0070711_10149786523300005439Corn, Switchgrass And Miscanthus RhizosphereRPNVKFATFFQTRFENYTTDCTGPSPSGQPIPCREERIAAITSNQVKVLKPPKKKHR*
Ga0070700_10161653123300005441Corn, Switchgrass And Miscanthus RhizosphereRFENYTTPCTGPSPSGLPVNCREERIASITSNQLKVLKPKPKKKHR*
Ga0070672_10139373023300005543Miscanthus RhizosphereTFFQTRFENYTTPCTGPSPSGLPVNCREERIAAITSNQLKVLKPKPKKKHR*
Ga0070686_10117466933300005544Switchgrass RhizosphereQTRFENYTTPCSGPSPSGLPVPCREERIAAVTSNQVKVLKPRKKHR*
Ga0070664_10119824223300005564Corn RhizosphereQTRFENYTTPCTDTPPGLPAVPCREERIAAVTSNQVKVLKPRKKHR*
Ga0068859_10096573123300005617Switchgrass RhizosphereKRIASSAKLPSSGKYTLARPNVKFATFFQTRFENYTTPCSGPSPSGLPVPCREERIAAITSNQIKVLKPKPKKKHR*
Ga0068866_1040109013300005718Miscanthus RhizosphereATFFQTRFENYTTPCSGPSPSGLPVPCREERIAAITSNQIKVLKPKPKKKHR*
Ga0068851_1051353423300005834Corn RhizosphereNVKFATFFQTRFENYTTPCSGPSPSGLPVPCREERIAAITSNQIKVLKPKPKKKHR*
Ga0068870_1032608623300005840Miscanthus RhizospherePNVKFATFFQTRFENYTTDCTGPSPSGQPIPCREERIAAITSNQVKVLKPPRKKHR*
Ga0068858_10102832513300005842Switchgrass RhizospherePNVKFATFFQTRFENYTTPCSGPSPSGLPVPCREERIAAITSNQIKVLKPKPKKKHR*
Ga0079222_1026642533300006755Agricultural SoilTPCTGPSPSGLPVNCREERITSITSNQLKVVKPKPKKKHR*
Ga0074063_1009776813300006953SoilGGTGKRVGSSAKLPSSGKYTLTRPNVKFATFFQTRFENYTTPCSGPSPSGLPVPCREERIAAITSNQIKVLKPKPKKKHR*
Ga0079219_1109813323300006954Agricultural SoilIARPNVKFSTFFQTRFENYVTPCEGPSPSGLPIPCREEAIAAVTSSQVKVLKPKKKKRR*
Ga0075419_1008526743300006969Populus RhizosphereRNVKFATFFQTRFENYGTQCTGPSPSGLPVPCKGEDIAAVTSNQLKVLKPKKKRR*
Ga0126374_1087632723300009792Tropical Forest SoilGTGKRMARSGKLPRTGKYSIARPNVKFATFFQARFENYGTQCSGSLAGVPPVPCAGEDIAAITSNQLKVLKPKKRR*
Ga0126313_1055135113300009840Serpentine SoilSGRYSIARPAVKVRTFFQTRFENYGTPCTGPSPSGLPVPCKGEDLAALTSNQVRATKPRKRR*
Ga0126309_1125606513300010039Serpentine SoilLAGQLKVRDLSPRNVRLGLYAGKRARPAPNATSGGTGKRIARLPRLPAAGKYSVLSRPVKVTTFFQTRFENYLTDCEAPSPAPGGCVGEDIAAVTSNQVKATKSKKRRR*
Ga0126314_1081942913300010042Serpentine SoilRLPTTGKYSILRSSVRATTYFQTRFESYITRCTGPSPSGLPVPCKGEDLAAITSNQVKATKPKRR*
Ga0126311_1104344623300010045Serpentine SoilGTGKRSGRSARLPTTGKYSILRSSVRATTYFQTRFESYITRCTGPSPSGLPVPCKGEDLAAITSNQVKATKPKRR*
Ga0126384_1195055013300010046Tropical Forest SoilTSKSKPTRSPVLKSTGKFTILRPNVKFATFFQARFENYTTDCTGPSPSGQPVPCREERIAAVTSNQVKVLKPKPKKHR*
Ga0126370_1205365813300010358Tropical Forest SoilIRSPLLKATGKYSIARQNVKFATFFQTRFENFVFDTCDPPSPSGLPIPCREERIAAVTSNQVKVLKPKPKKHR*
Ga0126376_1087882413300010359Tropical Forest SoilPIRSPLLKATGKYSIARQNVKFATFFQTRFENFVFNSCDPPSPSGLPIPCREERIAAVTSNQIKVLKPKPVKKKHK*
Ga0134126_1134504923300010396Terrestrial SoilFENYTTPCSGPSPSGLPVPCREERIAAITSNQVKVLKPKPKKKHR*
Ga0134126_1215240523300010396Terrestrial SoilPTSGKYSLSRPSVKFATFFQARFENYATPCTGASPTGLTLKCIGEDIAAVTSNQVKATKPRKR*
Ga0134122_1195144223300010400Terrestrial SoilENYTTDCTGPSPSGQPIPCREERIAAITSNQVKVLKPPRKKHR*
Ga0150985_11959608013300012212Avena Fatua RhizosphereTGALPASGKYSIARASVKFTTYFQARFENYLTDCTGPSPSGLPVPCAGESIAAVTSNQVKATKPKKKKRH*
Ga0157325_103173213300012485Arabidopsis RhizosphereGKRIARSPVLKATGKYTILRPNVKFATFFQTRFENYTTDCTGPSPSGQPIPCREERIAAITSNQVKVLKPPRKKHR*
Ga0157309_1018703913300012895SoilIARPNVRFATFFQTRFENYTTACTGPSPSGLPVKCGEERIAAITSNQVKVLKPKRKHR*
Ga0157303_1026112723300012896SoilSSGKYTMARRNVKFATFFQTRFENYVTKCEGPSPSGLPVPCREERVAAVTSNQVKVLKPKPKKRHR*
Ga0157292_1036083913300012900SoilENYGTSCEGPSPSGLPVPCKGEDIAAVTSNQLKVLKPKKKRR*
Ga0157289_1036505413300012903SoilKYSIARANVKFATFFQTRFENYTTACTGPSPSGLPVPCREERIAAITSNQIKVLKPKPKKKHR*
Ga0157283_1003288833300012907SoilATFFQTRFENYGTQCTGPSPSGLPVKCAGEDIAAVTSNQLKVLKPKKKRR*
Ga0157298_1002449733300012913SoilSPKLPRTGKYSIARPNVKFATFFQTRFENYGTQCTGPSPSGLPVKCGGEDIAAVTSNQLKVLKPKKKRR*
Ga0157302_1037687713300012915SoilSPKLLASGKYSIARPNVRFATFFQTRFENYTTACTGPSPSGLPVKCGEERIAAITSNQVKVLKPKKKHHK*
Ga0164300_1000509323300012951SoilMARRSVNFATFFQTRFENYGTDCTTPEPIPGVPAVPCKGEDIAAVTSNQVKVLKPKPTKKH*
Ga0164303_1070941313300012957SoilKFATFFQTRFENYTTACTGPSPSGLPVPCREERIAAITSNQLKVLKPKPKKKHR*
Ga0164301_1078016213300012960SoilRFENYTTPCSGPSPSGLPVPCREERIAAITSNQITVLKPKPTKKHR*
Ga0164309_1196786223300012984SoilTRSPKLPASGKYSIARPNVKFATFFQTRFENYTTACTGPSPSGLPVPCREERIAAITSNQLKVLKPKPKKKHR*
Ga0164308_1043604513300012985SoilTRPNVKFATFFQTRFENYTTPCSGPSPSGLPVPCREERIAAITSNQIKVLKPKPKKKHR*
Ga0157380_1168844713300014326Switchgrass RhizosphereENYTTPCTGPSPSGLPVNCREERIASITSNQLKVLKPKPKKKHR*
Ga0173478_1023355513300015201SoilPRTGKYSIARPNVKFATFFQTRFENYGTQCTGPSPSGLPVKCGGEDIAAVTSNQLKVLKPKKKRR*
Ga0132258_1099662813300015371Arabidopsis RhizosphereRFENYTTDCTGPSPSGQPIPCREERIAAITSNQVKVLKPPRKKHR*
Ga0132257_10086463713300015373Arabidopsis RhizosphereSVKFATFFQTRFENYTTSCTGPSPSGLPVPCREERIAAITSNQVKVLKPKPKKKHR*
Ga0132255_10446123213300015374Arabidopsis RhizosphereIARSPVLKATGKYTILRPNVKFATFFQTRFENYTTDCTGPSPSGQPIPCREERIAAITSNQVKVLKPPRKKHR*
Ga0184621_1032204313300018054Groundwater SedimentKKQKPAPTATTSGTGKRLLRSRSLPASGKYSIARPSVKFATFFQTRFENYGTSCTGPSPSGLPVPCNGEDLAAITSNQVKATKPKKKKRH
Ga0184618_1005130833300018071Groundwater SedimentVRAKTFFQTRFENYITTCEGPSPSGLPVPCKGEDLAAVTSNQVKATKPKRRR
Ga0184609_1026697313300018076Groundwater SedimentATGKYSILRASVKFTTFFQTRFENYITSCTGPSPSGLPVPCKGEDLAAVTSNQVKATKPKRRR
Ga0193701_101590013300019875SoilKPAPTATTSGTGKRLLRSRSLPASGKYSIARPSVKFATFFQTRFENYGTSCTGPSPSGLPVPCNGEDLAAITSNQVKATKPKKKKRH
Ga0193701_109581613300019875SoilTATAAGTGKRSGRSARLPATGKYSILRASVKFTTFFQTRFENYITSCTGPSPSGLPVPCKGEDLAAVTSNQVKATKPKRRR
Ga0193722_113634433300019877SoilSVKFATFFQTRFENYTTACTGASPSGLPVPCHHERIAAVTSNQVKVLKPKPKKKH
Ga0206356_1043970313300020070Corn, Switchgrass And Miscanthus RhizosphereTSGKYTLARPNVKFATFFQTRFENYTTPCTDTPPGLPAVPCREERIAAVTSNQVKVLKPKRKHR
Ga0210381_1009858213300021078Groundwater SedimentGKKPKPAPTATTNGTGKRLLRSAALPATGRYTIRRPAVKFTTFFQTRFEGYGTECTGASPSGLPVPCSGEDVAAVTSNQVKATKPKKKRR
Ga0193719_1008358413300021344SoilGKRSGRSGRLPATGKYSILRASVKFTTFFQTRFENYITTCEGPSPSGLPVPCKGEDLAAVTSNQVKATKPKRRR
Ga0222623_1009845523300022694Groundwater SedimentGKYSILRASVKFTTFFQTRFENYITSCTGPSPSGLPVPCKGEDLAAVTSNQVKATKPKRR
Ga0222623_1038663813300022694Groundwater SedimentSIARPSVKFATFFQTRFENYGTSCTGPSPSGLPVPCNGEDLAAITSNQVKATKPKKKKRH
Ga0247793_101195233300023066SoilALSGGTGKRIARSPKLPRTGKYSIARPNVKFATFFQTRFENYGTQCTGPSPSGLPVKCGGEDIAAVTSNQLKVLKPKKKRR
Ga0247800_104796423300023263SoilGTQCTGPSPSGLPVKCAGEDIAAVTSNQLKVLKPKKKRR
Ga0247694_100957033300024178SoilVKFATFFQTRFENYTTDCTGPSPSGQPIPCREERIAAITSNQVKVLKPPRKKHR
Ga0247672_101540713300024187SoilENYTTDCTGPSPSGQPIPCREERIAAITSNQVKVLKPPRKKHR
Ga0247680_105344323300024246SoilTRFENYTTDCTGPSPSGQPIPCREERIAAITSNQVKVLKPPRKKHR
Ga0247671_104805113300024284SoilLKATGKYTILRPNVKFATFFQTRFENYTTDCTGPSPSGQPIPCREERIAAITSNQVKVLKPPRKKHR
Ga0179589_1015998333300024288Vadose Zone SoilRNVKFATFFQTRFENYTTACTGPSPSGLPVPCHHERIAAVTSNQVKVLKPKPKKHK
Ga0247668_106356323300024331SoilARSPVLKATGKYTILRPNVKFATFFQTRFENYTTDCTGPSPSGQPIPCREERIAAITSNQVKVLKPPRKKHR
Ga0207693_1015434913300025915Corn, Switchgrass And Miscanthus RhizosphereKYTILRPNVKFATYFQTRFENFVTDCTGPSPSGAPIPCREERIAAITSNQVKVLKPPTKKHR
Ga0207663_1095372013300025916Corn, Switchgrass And Miscanthus RhizosphereYFQTRFENFVTDCTGPSPSGAPIPCREERIAAITSNQVKVLKPPTKKHR
Ga0207660_1081598023300025917Corn RhizosphereIARSPVLKATGKYTILRPNVKFATFFQTRFENYTTDCTGPSPSGQPIPCREERIAAITSNQVKVLKPPRKKHR
Ga0207681_1079379623300025923Switchgrass RhizosphereTRFENYTTPCSGPSPSGLPVPCREERIAAITSNQIKVLKPKPKKKHR
Ga0207650_1126550913300025925Switchgrass RhizosphereRFENYTTPCTDTPPGLPAVPCREERIAAVTSNQVKVLKPRKKHR
Ga0207644_1066016213300025931Switchgrass RhizosphereGGTGKRIASSAKLPSSGKYTLARPNVKFATFFQTRFENYTTPCSGPSPSGLPVPCREERIAAVTSNQIKVLKPKPKKKHR
Ga0207686_1164113023300025934Miscanthus RhizospherePCSGPSPSGLPVPCREERIAAITSNQIKVLKPKPKKKHR
Ga0207709_1131933723300025935Miscanthus RhizosphereSGKYTLARPNVKFATFFQTRFENYTTPCSGPSPSGLPVPCREERIAAITSNQIKVLKPKPKKKHR
Ga0207679_1097646713300025945Corn RhizosphereVKFATFFQTRFENYTTPCTDTPPGLPAVPCREERIAAVTSNQVKVLKPRKKHR
Ga0207675_10073733813300026118Switchgrass RhizosphereNYGTQCTGPSPSGLPVPCKGEDIAAVTSNQLKVLKPKKKRR
Ga0207523_10156113300026731SoilRPNVKFATFFQTRFENYGTQCTGPSPSGLPVKCAGEDIAAVTSNQLKVLKPKKKRR
Ga0209966_103268023300027695Arabidopsis Thaliana RhizosphereKRVGSSAKLPSSGKYTMARRNVKFATFFQTRFENYTTKCAGPSPSGLPVPCREERIAAVTSNQLKVLKPKKKRR
Ga0247685_101990323300028065SoilPNAVSAGKGKRIARSPVLKATGKYTILRPNVKFATFFQTRFENYTTDCTGPSPSGQPIPCREERIAAITSNQVKVLKPPRKKHR
Ga0307291_100933913300028707SoilFFQTRFENYTTPCTGPSPSGLPVPCHHERIAAVTSNQVKVLKPKPKKKKKH
Ga0307291_112180413300028707SoilSVKFTTFFQTRFENYITSCTGPSPSGLPVPCKGEDLAAVTSNQVKATKPKRRR
Ga0307313_1007499023300028715SoilVKFTTFFQTRFENYITTCEGPSPSGQPIPCKGEDLAALTSNQVKATKPRRR
Ga0307311_1020898723300028716SoilPSVKFATFFQARFENYATPCTGASPTGLTLKCIGEDIAAVTSNQVKATKPRKR
Ga0307315_1013318623300028721SoilGKRVASSAKLPSSGKYTMARPNVKFATFFQTRFENYTTPCTGPSPSGLPVPCHHERIAAVTSNQVKVLKPKPKKKKKH
Ga0307318_1023388123300028744SoilLVRTAKLPATGKYSIARSSVKFTTYFQTRFENYLTDCTGPSPSGLPVPCAGESLAALTSNQVKATKPKKRH
Ga0307297_1025118613300028754SoilTGPSPSGLPVPCNGEDLAAITSNQVKATKPKKKKRH
Ga0307316_1000708663300028755SoilENYTTPCTGPSPSGLPVPCHHERIAAVTSNQVKVLKPKPKKKKKH
Ga0307280_1010749723300028768SoilSSAKLPSSGKYTMARPNVKFATFFQTRFENYTTPCTGPSPSGLPVPCHHERIAAVTSNQVKVLKPKPKKKKKH
Ga0307280_1025537313300028768SoilLPSSGKYTIARPSVKFATFFQTRFENYTTDCNTPSPSGLPIKCREERIAAITSNQLKVLKPKPKKHKK
Ga0307280_1039266513300028768SoilVKFATFFQARFENYTTACTGPSPSGLPVPCREERIAAITSNQVKVLKPKPKKKHK
Ga0307306_1006655623300028782SoilRFENYGTSCTGPSPSGLPVPCNGEDLAAITSNQVKATKPKKKKRH
Ga0307290_1025886523300028791SoilSILRASVKFTTFFQTRFENYITSCTGPSPSGLPVPCKGEDLAAVTSNQVKATKPKKRR
Ga0307299_1009046413300028793SoilNYTTPCTGPSPSGLPVPCHHERIAAVTSNQVKVLKPKPKKKKKH
Ga0247824_1079089513300028809SoilTMARRNVKFATFFQTRFENYTTKCTGPSPSGLPVPCREERIAAVTSNQVKVLKPRPKKRR
Ga0307294_1027359123300028810SoilAGTGKRSGRSGRLPATGKYSILRASVKFTTFFQTRFENYITSCEGPSPSGLPIPCKGEDLAAVTSNQVKATKPKKRR
Ga0247825_1045202833300028812SoilRRNVKFATFFQTRFENYTTKCTGPSPSGLPVPCREERIAAVTSNQVKVLKPRPKKRR
Ga0307302_1001769613300028814SoilKPKPAPTATTGGTGKRIVRSAALPATGRYTIRRPTVKFTTFFQTRFENYATDCVGNSPSGLPVPCKGEDIAAVTSNQVKATKPKKKRRR
Ga0307296_1011922133300028819SoilGTGKRLLRSAALPATGRYTIRRPAVKFTTFFQTRFEGYGTECTGASPSGLPVPCSGEDVAAVTSNQVKATKPKKKRR
Ga0307310_1001231853300028824SoilFQTRFENYITSCTGPSPSGLPVPCKGEDLAAVTSNQVKATKPKRRR
Ga0307310_1038947223300028824SoilVKFATFFQTRFENYTTACTGPSPSGLPVPCREERIAAITSNQLKVLKPKPKKHKK
Ga0307310_1042883723300028824SoilSVKFTTFFQTRFENYITSCTGPSPSGLPVPCKGEDLAAVTSNQVKATKPKRR
Ga0307314_1002364313300028872SoilLPASGKYSIARPSVKFATFFQTRFENYGTSCTGPSPSGLPVPCNGEDLAAITSNQVKATKPKKKKRH
Ga0307286_1015200413300028876SoilFQTRFENYITTCEGPSPSGLPVPCKGEDLAAVTSNQVKATKPKRRR
Ga0307300_1005656413300028880SoilAGKKARPAPTATAAGTGKRSGRSARLPATGKYSILRASVKFTTFFQTRFENYITSCTGPSPSGLPVPCKGEDLAAVTSNQVKATKPKKRR
Ga0307300_1005745413300028880SoilQTRFENYTTPCTGPSPSGLPVPCHHERIAAVTSNQVKVLKPKPKKKKKH
Ga0307277_1019146023300028881SoilLYAGKKPKPAPTATTNGTGKRLLRSAALPATGRYTIRRPAVKFTTFFQTRFEGYGTECTGASPSGLPVPCSGEDVAAVTSNQVKATKPKKKRR
Ga0268241_1002213133300030511SoilLFQTRFENYGTQCTGPSPSGLPIECAGEDIAAITSNQVKATKPKKRKRR
Ga0310886_1037835213300031562SoilGTGKRIARSPKLPRTGKYSIARPNVKFATFFQTRFENYGTQCTGPSPSGLPVPCKGEDIAAVTSNQLKVLKPKKKRR
Ga0307469_1100533113300031720Hardwood Forest SoilGTGKRIASSAKLPSSGKYTLARPNVKFATFFQTRFENYTTPCSGPSPSGLPVPCREERIAAITSNQIKVLKPKPKKKHR
Ga0307469_1181375823300031720Hardwood Forest SoilIARPNVKFATFFQTRFENYGTQCTGPSPSGLPVPCKGEDIAAVTSNQLKVLKPKKKRR
Ga0308175_10137108423300031938SoilTECVGPSPAGPIPKGCREERIAAVTSNQVKVLKPKPKKKKH
Ga0310906_1038301223300032013SoilFATFFQTRFENYGTQCTGPSPSGLPVPCKGEDIAAVTSNQLKVLKPKKKRR
Ga0310890_1035886123300032075SoilNAHTTGTGKRIARSPKLPRTGKYSIARPNVKFATFFQTRFENYGTQCTGPSPSGLPVPCKGEDIAAVTSNQLKVLKPKKKRR
Ga0310889_1068845313300032179SoilKYSIARPNVKFATFFQTRFENYGTQCTGPSPSGLPVPCKGEDIAAVTSNQLKVLKPKKKR
Ga0247829_1176745023300033550SoilTTACTGPSPSGLPVPCHHERIAAVTSNQVKVLKPKPKKKH
Ga0373958_0144932_3_1433300034819Rhizosphere SoilTRFENYTTDCTGPSPSGQPIPCREERIAAITSNQVKVLKPPKKKHR


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