Metagenome / Metatranscriptome Family F072203

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072203
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	51 residues
Representative Sequence	MIGESIQFDYDFDVVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFMF
Number of Associated Samples	89
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	69.37 %
% of genes near scaffold ends (potentially truncated)	40.50 %
% of genes from short scaffolds (< 2000 bps)	59.50 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Archaea (61.157 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (36.364 % of family members)
Environment Ontology (ENVO)	Unclassified (61.983 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.116 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74. 1JGI25385J37094_100124855 2JGI25385J37094_100234043 3JGI25383J37093_101385271 4JGI25384J37096_100069401 5JGI25384J37096_101311262 6JGI25384J37096_101706801 7JGI25382J37095_100314661 8JGI25382J43887_101281241 9JGI25382J43887_101322022 10JGI25382J43887_102387442 11JGI25382J43887_104576901 12JGI25386J43895_101184452 13JGI25617J43924_103538141 14JGI25389J43894_10017203 15Ga0058897_100009362 16Ga0066672_100720193 17Ga0066672_106306792 18Ga0066683_103832521 19Ga0066679_101422753 20Ga0066679_102202651 21Ga0066690_106219191 22Ga0066688_101968512 23Ga0066688_102172831 24Ga0066688_107367081 25Ga0066688_107475311 26Ga0066685_101907613 27Ga0066685_103591121 28Ga0066678_111205341 29Ga0066686_100231295 30Ga0070707_1001579453 31Ga0066697_105007461 32Ga0066701_100311631 33Ga0066661_109163392 34Ga0066692_100757691 35Ga0066707_105351583 36Ga0066707_109395992 37Ga0066704_103659882 38Ga0066704_107618022 39Ga0066700_110141711 40Ga0066705_102090723 41Ga0066702_101806892 42Ga0066653_100818472 43Ga0075436_1014915101 44Ga0099793_100725112 45Ga0066710_1002043283 46Ga0066710_1038566621 47Ga0099829_100795581 48Ga0099829_109974591 49Ga0099828_101529533 50Ga0066709_1020441141 51Ga0134080_102810462 52Ga0134080_106977882 53Ga0134071_103659411 54Ga0134062_100683214 55Ga0150983_114209012 56Ga0137392_108182741 57Ga0137389_114318481 58Ga0137388_100762094 59Ga0137382_100333982 60Ga0137365_100595454 61Ga0137399_100037203 62Ga0137399_104500733 63Ga0137399_108715291 64Ga0137380_103207591 65Ga0137381_108643942 66Ga0137379_105076041 67Ga0137377_110112201 68Ga0137387_101229421 69Ga0137371_101513914 70Ga0137360_103940461 71Ga0137390_106717331 72Ga0134042_10870732 73Ga0134047_11455783 74Ga0134046_10933761 75Ga0134055_12028931 76Ga0134045_12720183 77Ga0137395_105105482 78Ga0137396_100081562 79Ga0137407_116103091 80Ga0134075_104786341 81Ga0137420_11369551 82Ga0187803_104680721 83Ga0215015_105572632 84Ga0210404_100126993 85Ga0210405_100892923 86Ga0137417_10857391 87Ga0137417_12320731 88Ga0209235_10105223 89Ga0209235_10115412 90Ga0209235_11568551 91Ga0209236_10254953 92Ga0209055_10083423 93Ga0209055_10092623 94Ga0209055_11751621 95Ga0209154_10186824 96Ga0209154_12652171 97Ga0209154_12950262 98Ga0209471_11824462 99Ga0209152_100014205 100Ga0209801_10167001 101Ga0209266_10034288 102Ga0209158_10938012 103Ga0209377_10122245 104Ga0209690_10449504 105Ga0209059_12444001 106Ga0209378_10886801 107Ga0209806_11473922 108Ga0209056_104198302 109Ga0209376_10419804 110Ga0209076_10017753 111Ga0209076_10048812 112Ga0209388_10097224 113Ga0209180_100288204 114Ga0209180_100517633 115Ga0209180_102089571 116Ga0137415_100574114 117Ga0307479_101931362 118Ga0307479_115891142 119Ga0307471_1002792973 120Ga0307471_1007860082 121Ga0307471_1013941402
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74. 1JGI25385J37094_100124855 2JGI25382J43887_101281241 3JGI25386J43895_101184452 4Ga0066683_103832521 5Ga0066685_103591121 6Ga0066678_111205341 7Ga0066697_105007461 8Ga0075436_1014915101 9Ga0134042_10870732 10Ga0187803_104680721 11Ga0307479_115891142
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74. 1JGI25385J37094_100124855 2JGI25382J43887_101281241 3JGI25386J43895_101184452 4Ga0066683_103832521 5Ga0066685_103591121 6Ga0066678_111205341 7Ga0066697_105007461 8Ga0075436_1014915101 9Ga0134042_10870732 10Ga0187803_104680721 11Ga0307479_115891142
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 23.08% Coil/Unstructured: 76.92%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF12697	Abhydrolase_6	19.01
PF02535	Zip	4.13
PF01040	UbiA	2.48
PF13404	HTH_AsnC-type	1.65
PF13298	LigD_N	1.65
PF07690	MFS_1	0.83
PF13412	HTH_24	0.83
PF01872	RibD_C	0.83

Showing 1 to 8 of 8 entries

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COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG0428	Zinc transporter ZupT	Inorganic ion transport and metabolism [P]	4.13
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.83
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.83

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.64 %
Unclassified	root	N/A	36.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.64 %
Unclassified	root	N/A	36.36 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	61.16 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.48 %
Unclassified	root	N/A	36.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.48 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	6.61 %
Unclassified	root	N/A	36.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.48 %
Candidatus Bathyarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	5.79 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	0.83 %
Unclassified	root	N/A	36.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.48 %
Thaumarchaeota incertae sedis	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis	0.83 %
Unclassified	root	N/A	36.36 %
unclassified Candidatus Bathyarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota	5.79 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.48 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	5.79 %
Candidatus Nitrosotalea	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotalea	0.83 %
Unclassified	root	N/A	36.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.48 %
Candidatus Bathyarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	5.79 %
Candidatus Nitrosotalea devanaterra	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotalea → Candidatus Nitrosotalea devanaterra	0.83 %
Unclassified	root	N/A	36.36 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002558\|JGI25385J37094_10012485	All Organisms → cellular organisms → Bacteria	3039	Open in IMG/M
3300002558\|JGI25385J37094_10023404	Not Available	2199	Open in IMG/M
3300002560\|JGI25383J37093_10138527	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	657	Open in IMG/M
3300002561\|JGI25384J37096_10006940	All Organisms → cellular organisms → Archaea	4213	Open in IMG/M
3300002561\|JGI25384J37096_10131126	All Organisms → cellular organisms → Archaea	826	Open in IMG/M
3300002561\|JGI25384J37096_10170680	All Organisms → cellular organisms → Archaea	665	Open in IMG/M
3300002562\|JGI25382J37095_10031466	All Organisms → cellular organisms → Archaea	2079	Open in IMG/M
3300002908\|JGI25382J43887_10132202	All Organisms → cellular organisms → Bacteria	1286	Open in IMG/M
3300002908\|JGI25382J43887_10238744	Not Available	844	Open in IMG/M
3300002908\|JGI25382J43887_10457690	All Organisms → cellular organisms → Archaea	540	Open in IMG/M

Showing 1 to 10 of 111 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.17%
Host-Associated	Host-Associated	0.83%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	0.83%
Plants	Host-Associated → Plants	0.83%
Terrestrial	Environmental → Terrestrial	98.35%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.83%
Soil	Environmental → Terrestrial → Soil	98.35%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	2.48%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	95.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.83%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.83%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	53.72%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.65%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	17.36%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	8.26%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.13%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	36.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	27.27%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M

Showing 1 to 10 of 89 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_100124855	3300002558	Grasslands Soil	MIGESIQLDYSFDVVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFIF*
JGI25385J37094_100234043	3300002558	Grasslands Soil	MIGESIQFDYDFDVVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFMF*
JGI25383J37093_101385271	3300002560	Grasslands Soil	GESVQFDYDFDVVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFMF*
JGI25384J37096_100069401	3300002561	Grasslands Soil	MGIVRKKRMIGESIQFDYDFDVVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLAFMF
JGI25384J37096_101311262	3300002561	Grasslands Soil	MIGESIQFDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRNAFRFALSLS
JGI25384J37096_101706801	3300002561	Grasslands Soil	VIGESIQFDYDFDVVGLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFM
JGI25382J37095_100314661	3300002562	Grasslands Soil	MIGESIQLDQGFDVVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFMF*
JGI25382J43887_101281241	3300002908	Grasslands Soil	MGIVRKKRMIGESIQFDYDFDVVRLDWQPIERHPRPFRKK
JGI25382J43887_101322022	3300002908	Grasslands Soil	MIGESVQFDYDFDVVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFMF*
JGI25382J43887_102387442	3300002908	Grasslands Soil	MIGESIQLDNSFDVVRLDWQPIERHPRPFKRKNPNDFGRNAFRFALSLSHMF*
JGI25382J43887_104576901	3300002908	Grasslands Soil	MIGESIQFDYSFDVVRLDWQPIERHPRPFKRKNPNDFGRSAFSLSLS
JGI25386J43895_101184452	3300002912	Grasslands Soil	MRKKSMVGENGSLDYDFHVVRLDWQPIERHPRPFRRKNPNDFGQMAY
JGI25617J43924_103538141	3300002914	Grasslands Soil	MIGESIQFDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRSAFRFNLSLSFIF*
JGI25389J43894_10017203	3300002916	Grasslands Soil	MIGESIQFDDSFDVVKLDWQPIERHPRPFRKKNPNDFGRSGFRFSLSLSHMLL*
Ga0058897_100009362	3300004139	Forest Soil	MIGESFHLDDFDVVRLDWQPIERHPRPFKRKNPNDFGRSAFRFSLTLSFMF*
Ga0066672_100720193	3300005167	Soil	MIGESIQFDDSFDVVRLDWQPIERHPRPFRKKNPNDFGRTAFRFALSLSHMLF*
Ga0066672_106306792	3300005167	Soil	MIGESIQLDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRSAFRFSLSLSFIL*
Ga0066683_103832521	3300005172	Soil	EIRMMRKKSMVGESRSIDYDLRVVRLDWQPIERHPRPFRRKNPNDFGRMAFRFCLSISHMLL*
Ga0066679_101422753	3300005176	Soil	MIGESIQFDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRSTFRFSLSLSFIF*
Ga0066679_102202651	3300005176	Soil	MIGESIQFDDSFDVVKLDWQPIERHPRPFKRKNPNDFGRNAFRFALSLSHMF*
Ga0066690_106219191	3300005177	Soil	RMIGESIQFDYDFDVVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFMF*
Ga0066688_101968512	3300005178	Soil	MIGESIQFDDGFDVVRMDWQPIERHPRPFKRKNPNDFGRSAFRFSLSLSFIF*
Ga0066688_102172831	3300005178	Soil	MIGESIQFDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRNAFRFALSLSHMF*
Ga0066688_107367081	3300005178	Soil	MIGESIQFDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRSAFRFSLSLSFIL*
Ga0066688_107475311	3300005178	Soil	MIGESIQFDDSFDVVRMDWQPIERHPRPFKRKNPNDFERNAFRFALSLSHMF*
Ga0066685_101907613	3300005180	Soil	MIGESIQFDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRNAFRFALS
Ga0066685_103591121	3300005180	Soil	FDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRNAFRFALSLSHMF*
Ga0066678_111205341	3300005181	Soil	MIGESLQFDDSFDVVRLDWQPIERHPRPFKRKNPNDFGRS
Ga0066686_100231295	3300005446	Soil	MIGASIQFDDGFDLVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLTLSHMF*
Ga0070707_1001579453	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MRKKRMIGESIQFDYDFDVVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFMF*
Ga0066697_105007461	3300005540	Soil	VVRKKKRMIGEISSDYEFRVVRLDWQPIERHPRPFRKRNPNDFGGMALKFCLSLSHMLL*
Ga0066701_100311631	3300005552	Soil	MIGESIQFDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRSAFRFSLSLSFIF*
Ga0066661_109163392	3300005554	Soil	MIGESIQFDDGFDVVRLDWQPIERHPRPFKRKNPNDFGR
Ga0066692_100757691	3300005555	Soil	MRKKSMVGENGSLDYDFHVVRLDWQPIERHPRPFRRKNPNDFGQMAYRFCPSLSHMLL*
Ga0066707_105351583	3300005556	Soil	MIGESIQFDDGFDVVRLDWQPIERHPRPFKRKNPNDFG
Ga0066707_109395992	3300005556	Soil	LGIVRKRRMIGESIQLDQSFEVFRLDWQPIERHPRPFKRKNPNDFGRNAFRFSLSLSFMF
Ga0066704_103659882	3300005557	Soil	MIGESIQLDYSFDVVRLDWQPIERHPRPFRKKNPNDFGRSAF
Ga0066704_107618022	3300005557	Soil	GESIQLDYSFDVVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFIF*
Ga0066700_110141711	3300005559	Soil	MIGESIQFDDSFDVVKLDWQPIERHPRPFRKKNPND
Ga0066705_102090723	3300005569	Soil	MIGESIQFDDSFDVVRLDWQPIERHPRPFKRKNPNDFGRNAFRFALSLSHMF*
Ga0066702_101806892	3300005575	Soil	MIGESIQFGDSFDVVRLDWQPIERHPRPFRKKNPNDFGRTAFRFALSLSHMLF*
Ga0066653_100818472	3300006791	Soil	MIGEISSDYEFRVVRLDWQPIERHPRPFRKRNPNDFGRMALKFCLSLSHMLL*
Ga0075436_1014915101	3300006914	Populus Rhizosphere	WTGISEEKRMIGESFQLDDDFDVVRLDWQPIERHPRPFRKKNPNDFGRMAGKFCPSLSHMLL*
Ga0099793_100725112	3300007258	Vadose Zone Soil	MIGESIQFDYNFDVVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFMF*
Ga0066710_1002043283	3300009012	Grasslands Soil	MIGESIQFDDGFDVVRMDWQPIERHPRPFKRKNPNDFGRSAFRFSLSLSFIF
Ga0066710_1038566621	3300009012	Grasslands Soil	DDGFDVVRLDWQPIERHPRPFKRKNPNDFGRSAFRFSLSLSFIL
Ga0099829_100795581	3300009038	Vadose Zone Soil	MIGESIQFDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRNAFRFSLSLSFIF*
Ga0099829_109974591	3300009038	Vadose Zone Soil	RKRMIGESIQFDYDFDVVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFMF*
Ga0099828_101529533	3300009089	Vadose Zone Soil	MIGESIQLDDSFDVVTLDWQPIERHPRPFRKKNPNDFGRSAFRFSISLSFMF*
Ga0066709_1020441141	3300009137	Grasslands Soil	MIGESIQLDYSFDVVRLDWQPIERHPRPFKRKNPNDFGRNAFRFALSLSHM
Ga0134080_102810462	3300010333	Grasslands Soil	MFGESIHLDYSFDVVRLDWQPIERHPRPFRKKNPNDFG
Ga0134080_106977882	3300010333	Grasslands Soil	MRKKSMVGESRSLDYDFRLVRLDWQPIERHPRPFRRKNPNDFGRMAFRFC
Ga0134071_103659411	3300010336	Grasslands Soil	MIGESIQFDYDFDVVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFRF*
Ga0134062_100683214	3300010337	Grasslands Soil	MIGESIQLDHSFDVVRLDWQPIERHPRPFRRKNPNDFGR
Ga0150983_114209012	3300011120	Forest Soil	SMIGESFQLDDFDVVRLDWQPIERHPRPFKRKNPNDFGRSAFRFSLTLSFMF*
Ga0137392_108182741	3300011269	Vadose Zone Soil	SIQFDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRSAFRFSLSLSFMF*
Ga0137389_114318481	3300012096	Vadose Zone Soil	QFDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRNAFRFSLSLSFMF*
Ga0137388_100762094	3300012189	Vadose Zone Soil	MIGESIQFDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRNAFRFSL
Ga0137382_100333982	3300012200	Vadose Zone Soil	MIGESIQFDDDFDVVRLDWQPIERHPRPFKRKNPNDFGRNAFRFALSLSHMF*
Ga0137365_100595454	3300012201	Vadose Zone Soil	MIGEISSGYEFRVVRLDWQPIERHPRPFRRKNPNDFGRMALMFCLSLSHMLL*
Ga0137399_100037203	3300012203	Vadose Zone Soil	MIGESIQFDYDFDLVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFMF*
Ga0137399_104500733	3300012203	Vadose Zone Soil	MIGESIELDYSFEVVRLDWQPIERHPRPFRKKNPNDFGRSAFR
Ga0137399_108715291	3300012203	Vadose Zone Soil	MGRLDRDTVRKKRMIGESIQLDYSFEVVRLDWQPIERHPRPFRKKNPNDFGRMAFKFCPSLSHMLL*
Ga0137380_103207591	3300012206	Vadose Zone Soil	LDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRSAFRFSLSLS
Ga0137381_108643942	3300012207	Vadose Zone Soil	MGKKSMVGENGSLDYDFHVVRLDWQPIERHPRPFRRKNPNDFGRMAY
Ga0137379_105076041	3300012209	Vadose Zone Soil	YSEEKRMIGESIQLDDSFDVVRLDWQPIERHPRPFKRKNPNDFGRNAFRFALSLSHMF*
Ga0137377_110112201	3300012211	Vadose Zone Soil	MIGESIQFDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRNAFRFALSLSH
Ga0137387_101229421	3300012349	Vadose Zone Soil	MIGESFQVDYSFDVVRLDWQPIERHPRPFKRKNPNDFGRSAFRFSLSLSF
Ga0137371_101513914	3300012356	Vadose Zone Soil	LDYSFVVVRLDWQPIERHPRPFKRKNPNDFGRSAFRFALSLSH
Ga0137360_103940461	3300012361	Vadose Zone Soil	MIGESIQFDDSFDVVKLDWQPIERHPRPFKRKNPNDFGRNAFRF
Ga0137390_106717331	3300012363	Vadose Zone Soil	MIGESIQLDYSFEVLRLDWQPIERHPRPFRKKNPNDFG
Ga0134042_10870732	3300012373	Grasslands Soil	MIGEISSDYEFRVVRLDWQPIERHPRPFRKRNPNDFG
Ga0134047_11455783	3300012380	Grasslands Soil	MMRKKSMVGESRSIDYDLRVVRLDWQPIERHPRPFRRKNPNDFGRMAFRFCLSISHMLL*
Ga0134046_10933761	3300012386	Grasslands Soil	KRMIGEISSDYEFRVVRLDWQPIERHPRPFRKRNPNDFGGMALKFCLSLSHMLL*
Ga0134055_12028931	3300012401	Grasslands Soil	RKERMIGESIQFDYDFDVVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLAFMF*
Ga0134045_12720183	3300012409	Grasslands Soil	SGYEFRVVRLDWQPIERHPRPFRKRNPNDFGGMALKFCLSLSHMLL*
Ga0137395_105105482	3300012917	Vadose Zone Soil	MGIVRKRRMIGESIQLDYSFDVVRLDWQPIERHPRPFKRKNPNDFGRNAFRFALSLSHMF
Ga0137396_100081562	3300012918	Vadose Zone Soil	MIGESMQFDYDFDLVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFMF*
Ga0137407_116103091	3300012930	Vadose Zone Soil	SIQFDYDFDVVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFMF*
Ga0134075_104786341	3300014154	Grasslands Soil	MIGASIQFDDGFDLVRLDWQPIERHPRPFRKKNPNDFGRSAFR
Ga0137420_11369551	3300015054	Vadose Zone Soil	KRRMIGESIQFIGESIQFDYDFDLVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFMF*
Ga0187803_104680721	3300017934	Freshwater Sediment	MIGESIQLDTGFDLVRLDWHPIERHPRPFRKKNPNDFGRSAFK
Ga0215015_105572632	3300021046	Soil	MIGDSPQIDYSFDVVRLDWQPIERHPRPFKRKNPNDFGRMAFRYCLSLSHMLF
Ga0210404_100126993	3300021088	Soil	MIGESFQLDDFDVVRLDWQPIERHPRPFKRKNPNDFGRSAFRFSLTLSFMF
Ga0210405_100892923	3300021171	Soil	MIGESFHLDDFDVVRLDWQPIERHPRPFKRKNPNDFGRSAFRFSLSLSFMF
Ga0137417_10857391	3300024330	Vadose Zone Soil	MSIVRKRRMIGESIQFDYDFDLVRLDWQPIERHPRPFRKKNPNDFGRSAFSFSLSLSFMF
Ga0137417_12320731	3300024330	Vadose Zone Soil	MIGESIQFDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRSAFRFSLSLSFIF
Ga0209235_10105223	3300026296	Grasslands Soil	MGIVRKKRMIGESIQFDYDFDVVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFMF
Ga0209235_10115412	3300026296	Grasslands Soil	MIGESIQFDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRNAFRFALSLSHMF
Ga0209235_11568551	3300026296	Grasslands Soil	RMIGESIQLDNSFDVVRLDWQPIERHPRPFKRKNPNDFGRNAFRFALSLSHMF
Ga0209236_10254953	3300026298	Grasslands Soil	MIGESIQFDYDFDVVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFMF
Ga0209055_10083423	3300026309	Soil	MIGESIQFDDSFDVVRLDWQPIERHPRPFRKKNPNDFGRTAFRFALSLSHMLF
Ga0209055_10092623	3300026309	Soil	MIGESIQLDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRSAFRFSLSLSFIL
Ga0209055_11751621	3300026309	Soil	MIGESIQFDDSFDVVRLDWQPIERHPRPFKRKNPNDFGRSAFRFSLSLSF
Ga0209154_10186824	3300026317	Soil	LDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRSAFRFSLSLSFIL
Ga0209154_12652171	3300026317	Soil	MIGESIQFDDGFDVVGMDWQPIERHPRPFKRKNPNDFGRSAFRFSLSLSFIF
Ga0209154_12950262	3300026317	Soil	MIGESIQFDDGFDVVRMDWQPIERHPRPFKRKNPNDFGRSAFRFSLSLPFIF
Ga0209471_11824462	3300026318	Soil	MIGESIQFDDSFDVVKLDWQPIERHPRPFKRKNPNDFGRNALRFALSLSHM
Ga0209152_100014205	3300026325	Soil	MIGESLQFDDSFDVVRLDWQPIERHPRPFKRKNPNDFGRNAFRFALSLSHMF
Ga0209801_10167001	3300026326	Soil	MIGESIQFDDSFDLVRLDWQPIERHPRPFKRKNPND
Ga0209266_10034288	3300026327	Soil	MIGESIQFDDGFDVVRLDWQPIERHPRPFKRKNPNEFGRSAFRFSLSLSFIF
Ga0209158_10938012	3300026333	Soil	MIGESIQFDDSFDVVKLDWQPIERHPRPFKRKNPNDFGRNALRFALSLSHMF
Ga0209377_10122245	3300026334	Soil	MIGESIQLDYSFDVVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFIF
Ga0209690_10449504	3300026524	Soil	MIGESIQFDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRSAFRFSLSLSFIL
Ga0209059_12444001	3300026527	Soil	MIGESIQFDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRNAFRFAL
Ga0209378_10886801	3300026528	Soil	MIGESIQFDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRSA
Ga0209806_11473922	3300026529	Soil	MIGESIQFDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRSAFRFSLTLSHTF
Ga0209056_104198302	3300026538	Soil	WVTHDNPIMRKKSMVGENGSLDYDFHVVRLDWQPIERHPRPFRRKNPNDFGRMAYRFCPSLSHMLL
Ga0209376_10419804	3300026540	Soil	VVRKKKRMIGEISSDYEFRVVRLDWQPIERHPRPFRKRNPNDFGGMALKFCLSLSHMLL
Ga0209076_10017753	3300027643	Vadose Zone Soil	MGVVRKKRMIGESIQFDYDFDIVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFMF
Ga0209076_10048812	3300027643	Vadose Zone Soil	MGIVRKRRMIGESIQFDYNFDVVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFMF
Ga0209388_10097224	3300027655	Vadose Zone Soil	MDYDFDVVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSF
Ga0209180_100288204	3300027846	Vadose Zone Soil	MIGESIQFDDGFDVVRLDWQPIERHPRPFKRKNPNDFGRNAFRFSLSLSFIF
Ga0209180_100517633	3300027846	Vadose Zone Soil	MIGESIQLDDSFDVVTLDWQPIERHPRPFRKKNPNDFGRSAFRFSISLSFMF
Ga0209180_102089571	3300027846	Vadose Zone Soil	PMQGIVRKKSMIGASFQLDDDFDVVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFMF
Ga0137415_100574114	3300028536	Vadose Zone Soil	MSIVRKRRMIGESIQFDYDFDLVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFMF
Ga0307479_101931362	3300031962	Hardwood Forest Soil	MIGASFQLDDDFDVVRLDWQPIERHPRPFKRKNPNDFGRSAFRFSLSLTYCF
Ga0307479_115891142	3300031962	Hardwood Forest Soil	GIVRKKRMIGASFQLDDDFDVVRLDWQPIERHPRPFKRKNPNDFGRSAFMFSLSLTYCF
Ga0307471_1002792973	3300032180	Hardwood Forest Soil	MIGESIQLDDDFDVVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFMF
Ga0307471_1007860082	3300032180	Hardwood Forest Soil	SIQLDDDFDVVRLDWQPIERHPRPFKRKNPNDFGRSAFRFSLSLSFMF
Ga0307471_1013941402	3300032180	Hardwood Forest Soil	MGVVRKRRMIGESFQLDDDFDVVRLDWQPIERHPRPFRKKNPNDFGRSAFRFSLSLSFMF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072203

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences