Metagenome / Metatranscriptome Family F072147

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072147
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	63 residues
Representative Sequence	MAVISRSGFLVVCLAALSALFIQNMRHDSMLEGIPSGKTRVLDLSYAINDKLVPWPGDEKFF
Number of Associated Samples	92
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.52 %
% of genes near scaffold ends (potentially truncated)	98.35 %
% of genes from short scaffolds (< 2000 bps)	88.43 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (51.240 % of family members)
Environment Ontology (ENVO)	Unclassified (51.240 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.240 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92 1JGI1027J11758_118886761 2JGI12636J13339_10505792 3JGI25617J43924_101586082 4JGI25617J43924_101767822 5Ga0058891_15030652 6Ga0066672_100255476 7Ga0066673_101176451 8Ga0066690_1000293110 9Ga0066676_106244912 10Ga0066682_107011841 11Ga0066682_109025652 12Ga0066703_108109591 13Ga0070766_105546081 14Ga0070766_106789531 15Ga0066696_102562823 16Ga0075023_1002600601 17Ga0066665_114025942 18Ga0099793_101169841 19Ga0099794_100592174 20Ga0066710_1044648442 21Ga0099829_113115182 22Ga0099829_117618142 23Ga0099830_117112131 24Ga0099828_111341842 25Ga0099827_108517231 26Ga0099827_114171631 27Ga0066709_1040124091 28Ga0099792_106771102 29Ga0116220_104840602 30Ga0134070_101416351 31Ga0134086_101495531 32Ga0134071_107201891 33Ga0150983_116986702 34Ga0137392_101999234 35Ga0137391_112184631 36Ga0137393_110270552 37Ga0137389_100283358 38Ga0137389_112396332 39Ga0137389_115423612 40Ga0137389_117430931 41Ga0137388_117207402 42Ga0137383_108994012 43Ga0137382_112509021 44Ga0137363_109060931 45Ga0137362_107773852 46Ga0137377_101040511 47Ga0137377_103005671 48Ga0137377_117492151 49Ga0137386_103972313 50Ga0137384_109516932 51Ga0137384_112243821 52Ga0137385_114503851 53Ga0137385_114840111 54Ga0137361_102926661 55Ga0137361_106526402 56Ga0137361_111506531 57Ga0137361_111854822 58Ga0137390_101037971 59Ga0137390_111877662 60Ga0137390_113414001 61Ga0137358_101871704 62Ga0137398_108650252 63Ga0137395_100594761 64Ga0137396_107029951 65Ga0137396_110877621 66Ga0137359_104311103 67Ga0137413_103740653 68Ga0137413_103853681 69Ga0137419_106607711 70Ga0137416_111851581 71Ga0137407_121596451 72Ga0134077_105806251 73Ga0137411_12449551 74Ga0137411_12672611 75Ga0137420_13497561 76Ga0137412_101910391 77Ga0187815_101132801 78Ga0187804_105830662 79Ga0066667_121147592 80Ga0179594_100517411 81Ga0179594_103423231 82Ga0179592_100365031 83Ga0215015_104078271 84Ga0210404_106055142 85Ga0210400_115453101 86Ga0210405_101826904 87Ga0210405_108207382 88Ga0210396_100058301 89Ga0210409_117246782 90Ga0242654_102074531 91Ga0179589_102969691 92Ga0137417_11502402 93Ga0209155_10114217 94Ga0209155_11233702 95Ga0209471_12763892 96Ga0209647_10827084 97Ga0209804_10379101 98Ga0257176_10249691 99Ga0257179_10082663 100Ga0257158_11352412 101Ga0209805_12108341 102Ga0209474_101520044 103Ga0209648_103076281 104Ga0209648_104278291 105Ga0209648_105859812 106Ga0179593_10754893 107Ga0179593_11658113 108Ga0207948_10102091 109Ga0209117_11627701 110Ga0209009_10507293 111Ga0209701_107156712 112Ga0209283_101695914 113Ga0209590_110253072 114Ga0137415_102240251 115Ga0307308_100463584 116Ga0307479_106470893 117Ga0307471_1002162381 118Ga0307471_1005922001 119Ga0307471_1018699552 120Ga0307472_1001715194 121Ga0307472_1023897271
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92 1JGI1027J11758_118886761 2JGI12636J13339_10505792 3JGI25617J43924_101586082 4Ga0058891_15030652 5Ga0066672_100255476 6Ga0066673_101176451 7Ga0066676_106244912 8Ga0066682_107011841 9Ga0070766_105546081 10Ga0070766_106789531 11Ga0066696_102562823 12Ga0075023_1002600601 13Ga0066665_114025942 14Ga0099829_113115182 15Ga0099830_117112131 16Ga0099828_111341842 17Ga0099792_106771102 18Ga0116220_104840602 19Ga0134070_101416351 20Ga0137389_112396332 21Ga0137389_117430931 22Ga0137388_117207402 23Ga0137363_109060931 24Ga0137362_107773852 25Ga0137361_106526402 26Ga0137395_100594761 27Ga0137396_107029951 28Ga0137416_111851581 29Ga0187815_101132801 30Ga0215015_104078271 31Ga0210400_115453101 32Ga0210405_108207382 33Ga0257179_10082663 34Ga0179593_10754893 35Ga0179593_11658113 36Ga0207948_10102091 37Ga0137415_102240251
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62 1Ga0137413_103853681 2JGI1027J11758_118886761 3JGI12636J13339_10505792 4JGI25617J43924_101767822 5Ga0066672_100255476 6Ga0066676_106244912 7Ga0066703_108109591 8Ga0070766_106789531 9Ga0075023_1002600601 10Ga0099794_100592174 11Ga0099829_113115182 12Ga0099830_117112131 13Ga0099828_111341842 14Ga0116220_104840602 15Ga0134070_101416351 16Ga0134071_107201891 17Ga0150983_116986702 18Ga0137389_115423612 19Ga0137389_117430931 20Ga0137383_108994012 21Ga0137363_109060931 22Ga0137362_107773852 23Ga0137377_101040511 24Ga0137377_103005671 25Ga0137384_112243821 26Ga0137361_106526402 27Ga0137361_111506531 28Ga0137390_113414001 29Ga0137396_107029951 30Ga0137396_110877621 31Ga0137413_103740653 32Ga0137416_111851581 33Ga0137420_13497561 34Ga0187815_101132801 35Ga0179594_100517411 36Ga0179592_100365031 37Ga0215015_104078271 38Ga0210400_115453101 39Ga0210396_100058301 40Ga0179589_102969691 41Ga0209155_11233702 42Ga0179593_10754893 43Ga0207948_10102091 44Ga0209117_11627701 45Ga0209009_10507293 46Ga0137415_102240251 47Ga0307479_106470893 48Ga0307471_1002162381 49Ga0307471_1018699552
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 45.56% β-sheet: 0.00% Coil/Unstructured: 54.44%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Predicted 3D Structure

Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF01878	EVE	81.82
PF00355	Rieske	7.44
PF01058	Oxidored_q6	4.96
PF00106	adh_short	1.65
PF04199	Cyclase	1.65
PF00990	GGDEF	0.83
PF16124	RecQ_Zn_bind	0.83

Showing 1 to 7 of 7 entries

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COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG1673	Predicted RNA-binding protein, contains PUA-like EVE domain	General function prediction only [R]	81.82
COG2947	Predicted RNA-binding protein, contains EVE domain	General function prediction only [R]	81.82
COG0377	NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase	Energy production and conversion [C]	4.96
COG1740	Ni,Fe-hydrogenase I small subunit	Energy production and conversion [C]	4.96
COG1941	Coenzyme F420-reducing hydrogenase, gamma subunit	Energy production and conversion [C]	4.96
COG3260	Ni,Fe-hydrogenase III small subunit	Energy production and conversion [C]	4.96
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	1.65

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	70.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.48 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.48 %
Unclassified	root	N/A	0.00 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	65.29 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	65.29 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.83 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.83 %
Unclassified	root	N/A	0.00 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_11888676	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300001154\|JGI12636J13339_1050579	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300002914\|JGI25617J43924_10158608	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	771	Open in IMG/M
3300002914\|JGI25617J43924_10176782	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	714	Open in IMG/M
3300004104\|Ga0058891_1503065	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	656	Open in IMG/M
3300005167\|Ga0066672_10025547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3157	Open in IMG/M
3300005175\|Ga0066673_10117645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1446	Open in IMG/M
3300005177\|Ga0066690_10002931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7198	Open in IMG/M
3300005186\|Ga0066676_10624491	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	731	Open in IMG/M
3300005450\|Ga0066682_10701184	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	622	Open in IMG/M

Showing 1 to 10 of 121 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	2.48%
Terrestrial	Environmental → Terrestrial	97.52%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	1.65%
Sediment	Environmental → Aquatic → Sediment	0.83%
Soil	Environmental → Terrestrial → Soil	97.52%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	9.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	88.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.83%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.65%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.22%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.61%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	18.18%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.48%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.65%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	57.02%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.44%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.31%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.96%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.26%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	51.24%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.83%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001154	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004104	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF218 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M

Showing 1 to 10 of 92 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_118886761	3300000789	Soil	MSAVGRSGALALCIAALMTLLPDKPRQNSMLEGIPSGKTRVLDLSYAINDKLVPWPGDEKFFEAKVNAT
JGI12636J13339_10505792	3300001154	Forest Soil	MAAFGRSSIFVVCLAALSTFLLQNIHHDSMLEGIHSGKTRVLDLSYAINDKLVPWPGDEKFFEAKVNAS
JGI25617J43924_101586082	3300002914	Grasslands Soil	MAAIGRYGILAVILAAFSTFLLQNKHYDSKLEGVPSGKTRVLDLSYAINDKLVPWPGDEK
JGI25617J43924_101767822	3300002914	Grasslands Soil	MAAIGRYGILALVLAASSTFLLQNKHYDSKLEGVPSGKTRVLDLSYAIND
Ga0058891_15030652	3300004104	Forest Soil	MGASGRSGIFFVCAAALMTLVPQNPRRDSMLEGIPSGKTRVLDLSYAISDKLVPWPGDER
Ga0066672_100255476	3300005167	Soil	MAAFSRRGIFVACFAVPFALLLQNTHRDSMLEGIPSGKTRVLDLSYAISDKL
Ga0066673_101176451	3300005175	Soil	MAAIGRAGIVVVILAALSMFSLHKDHNDSTPEGVPSKARILDLSYAINDKLVPWPGDEKFFEAKVNATIEKNGY
Ga0066690_1000293110	3300005177	Soil	MAAFGRSGTFIVCLAVLFTLLPQNTHHHTMLEGIPSGKTRVLDLSYAISDKL
Ga0066676_106244912	3300005186	Soil	MAAFGRSGTFIVCLAVLFTLLPQNTHHHTMLEGIPSGKTRVLDLSYAISDKLVPWPGDEKFFE
Ga0066682_107011841	3300005450	Soil	MAVIGRSGFLVACLAGLSALFIQNMHHDSMLEGVPSGKTRVLDLSYAI
Ga0066682_109025652	3300005450	Soil	MAAFGRSGTFIVCLATLFTLLSQNTHYHTMLEGIPSGKTRVLDLSYAISDKLVPWPGDEKFFEAKV
Ga0066703_108109591	3300005568	Soil	MAVVGRYSFLVICFAALSTLFLQNMRHDSMLEGVPSGKTRVLDLSYAINDKL
Ga0070766_105546081	3300005921	Soil	MAALGRWGIFAVGLAALVSLFPQNSRQDSMLEGIPSGKTRVLDLSYAINDKL
Ga0070766_106789531	3300005921	Soil	MRAGRCEIFFVSVAALMTLVPQNSHKDSMLDGIPSGKTRVLDLSYAISDKLVPWPGDEKFFEAKVNATVEK
Ga0066696_102562823	3300006032	Soil	MAASGRSGPFIVCLAVLFTLLSQNTHHHAMLEGIPSGKTRVLDLSYAISD
Ga0075023_1002600601	3300006041	Watersheds	MASLGRWSVPVVCLAAIMTLLPQKARQDSMLEGVPSGKTRVLDLSYAINEKLVPWP
Ga0066665_114025942	3300006796	Soil	MATTGRSGIFAVCFAALTALVTQTPRHDSMLEGVPSGKTRVLDLSYAINDKLVPWPGDGKFFEANVNATIEKNGYFTRSFWMLEHYGTHLD
Ga0099793_101169841	3300007258	Vadose Zone Soil	MPAVGRSGALALCIAALITMFPDKPRQNSMLEGIPSGKTRVLDLSYAINDRLVPWPGD
Ga0099794_100592174	3300007265	Vadose Zone Soil	MAAIGRSGMFVVFIALLSAVLSQNAPHDSMLEGVPSGKTRVLDLSYAINDKLVPWPGDEK
Ga0066710_1044648442	3300009012	Grasslands Soil	MAAIGRASIVVVILAALSMFSLHKDHNDSTPEGVPSKARILDLSYAINDKLVPWPGDEKFFEAKVNATIEKN
Ga0099829_113115182	3300009038	Vadose Zone Soil	MAFTSRSGIFAACAVALIALFPQNPRENSMLEGVPSGKTRVLDLSYAISDKLVPWPGDEKWFEAKVNATVEK
Ga0099829_117618142	3300009038	Vadose Zone Soil	MSAVGRSGVLALSIAALMTLFPDKPRQNSILEGIPSGKTRVLDLSYAINDKLVPWPGDEKFFE
Ga0099830_117112131	3300009088	Vadose Zone Soil	MAAIGRSGIFVLCIPVFFTLLLQNMHHDPMLEGIPSGNTRVLDLSYAISDKLVPWPGDG
Ga0099828_111341842	3300009089	Vadose Zone Soil	MVAIGRSSMFAVCFALLIAFVSQNTHHDSMLEGVPSGKTRVLDLSYAIN
Ga0099827_108517231	3300009090	Vadose Zone Soil	MSAVGRSGVLALCIAALMTLLPDKPRQNSMLEGIPSGKTRVLDLSYAINDKLVPWPGDEK
Ga0099827_114171631	3300009090	Vadose Zone Soil	MAAIGRSGIFVLCIPVFFTLLLQNMHHDPMLEGIPSGKTRVLDLSYAINDKLVPWP
Ga0066709_1040124091	3300009137	Grasslands Soil	MAAIGRASIVVVILAALSMFSLHKDHNDSTPEGVPSKARILDLSYAINDKLVPWPGDEKFFEAK
Ga0099792_106771102	3300009143	Vadose Zone Soil	MAAVGRSSFLVVSFVVLTALFSQNMRYDSKLEGIPSGKTRVLDLSYVINDKLVPWPGDEKFFEAKVNASVEKN
Ga0116220_104840602	3300009525	Peatlands Soil	MTAFGRWGIFTVGLAALVSLFPQNARQDSMLEGIPSGKTRVLDLSYAISDKLVPWPGDAKFFEAKVNATIEKNGYFTRSFWML
Ga0134070_101416351	3300010301	Grasslands Soil	MATTGRSGIFAVCFAALTALVTQTPRHDSMLEGVPSGKTRVLDLSYAINDKLVPWPGDGKFFE
Ga0134086_101495531	3300010323	Grasslands Soil	MATTGRSGISAVCFAALTALVTQTPRHDSMLEGVPSGKTRVLDLSYAINDKLVPWPGDGK
Ga0134071_107201891	3300010336	Grasslands Soil	MAVFGRAGFLVVCLAALSTLFLQNMHHDSMLDGVSSGKTRVLDLSYAINEKLVPWPGDEKFFEAKVNASIEKNGY
Ga0150983_116986702	3300011120	Forest Soil	MGASGRSGIFFVCAAALMTLVPQNPRRDSMLEGIPSGKTRVLDLSYAISDKLVPWPGDERFFEAKVNA
Ga0137392_101999234	3300011269	Vadose Zone Soil	MGALGRSSIFAVCFALLIALLSQNTHHDSMLEGVPSGKTRVLDLSYAINDKLVPWPGDEKFFEAKVNATVEK
Ga0137391_112184631	3300011270	Vadose Zone Soil	MATIGRSGIFAVCFAALTALVTQTPRHDSMLEGVPSGRTRVLDLSYAINDKLVPWPGDGKFFEAKVNATIEKNGYFTRSFWMLEHYGTHLD
Ga0137393_110270552	3300011271	Vadose Zone Soil	MASIGRSGIFAVCFAALTALVTQTPRHDPMLEGIPSGKTRVLDLSYAINDKLVPWPGDGKFFEAKVNATIE
Ga0137389_100283358	3300012096	Vadose Zone Soil	MSAVGRSGALALCIAALITMFPDKPRQNSMLEGIPSGKTRVLDLSYAINDKLVPWPGDE
Ga0137389_112396332	3300012096	Vadose Zone Soil	MAVTGRSGIFAACAVALIALFPQNPRQNSIMEGVPSGKTRVLDLSYAISDKLVPWPGD
Ga0137389_115423612	3300012096	Vadose Zone Soil	MAAIGRSGILVVCFAVLSTLLLQNMRHDSMLEGVPSGKTRVLDLSYAINDKLVPWPGDEKYFEAKVNASVEK
Ga0137389_117430931	3300012096	Vadose Zone Soil	MAAIGRSGVLVVCFAVLSTLLSKNMHRDSMLEGVPSGKTRVIDLSYAISDKLVPWP
Ga0137388_117207402	3300012189	Vadose Zone Soil	MSAVGRSAVLATCAAALMILHPQSPRQDSMLEGIPSGKTRVLDLSYAINDKLVPWP
Ga0137383_108994012	3300012199	Vadose Zone Soil	MAAIGRSSILAVILAALSTFLFQNKHYDSKLEGVPSGKTRVLDLSYAINDKLVPWPGDEKFFEAKVNASVEK
Ga0137382_112509021	3300012200	Vadose Zone Soil	MAAFGRSNIFAVCFALFLALLSQNAHHDSMLEGVPSGKTRVLDLSYAINDKL
Ga0137363_109060931	3300012202	Vadose Zone Soil	MAFFGRSSILVVCLAALSALFFQNALHDSILEGVPAGKTRVLDLSYAISDKLVPWPGDAK
Ga0137362_107773852	3300012205	Vadose Zone Soil	MAAFGRSNILVLCLALFFALRSQHTHHDSVLEGVPSGKTRVLDLSYAINDKLVPWPGDEKFFEA
Ga0137377_101040511	3300012211	Vadose Zone Soil	MAAFGRSNILAVCFALLLALRSQYTHHHSMLEGVPSGKTRVLDLSYAINDKLVPWPGDEKFFEATVNASV
Ga0137377_103005671	3300012211	Vadose Zone Soil	MAVIGRSGFLVACLAGLSALFIQNMHHDSMLEGVPSGKTRVLDLSYAINDKLVSWPGDER
Ga0137377_117492151	3300012211	Vadose Zone Soil	MAAIGRSGIFAVCFTTLAVLVTQTPRHDSMLEGVPSGKTRVLDLSYAINDKLVPWPGDGKFFEAKVNATIEKNG
Ga0137386_103972313	3300012351	Vadose Zone Soil	MASIGRSGIFAVCFAALTALVTQTPRHDSILEGVPSGKTRVLDLSYAINDKLVPWPGDGKFFE
Ga0137384_109516932	3300012357	Vadose Zone Soil	MASIGRSGIFAVCFAALTALVTQTPRHDSMLEGVPSGKTRVLDLSYAINDKLVPWPGDGKFFEAKVNATIEKNGYFTRSFWML
Ga0137384_112243821	3300012357	Vadose Zone Soil	MAAIGRYGILVVILASLSTFLLQNKHYNSMLEGVPSGKTRVLDLSYAINDKLVPWPGDEK
Ga0137385_114503851	3300012359	Vadose Zone Soil	MAAIGRSGIFAVCFAALAVLVTQTPRHDSMLEGVPSGKTRVLDLSYAINDKLVPWPGDGKFFEAKVNATIEKNGYFTRSFWMLEHYGTHL
Ga0137385_114840111	3300012359	Vadose Zone Soil	MAAIGRSGIFAVCFAALAVLVTQTPRHDSILEGVPSGKTRVLDLSYAINDKLVPWPGDGEFFEAKVNATIEKNGYFTRSFWMLEHYG
Ga0137361_102926661	3300012362	Vadose Zone Soil	MATIGRSGIFAVCFAALTALVTQTPRQDAMLEGVPSGKTRVLDLSYAINDKLVPWPGDGKFFE
Ga0137361_106526402	3300012362	Vadose Zone Soil	MGAIFRPGICVLCFAALSMLLSQNVRHDSMLEGVPSGKTRVLDLSYAISDKLVPWPGDAKFFEA
Ga0137361_111506531	3300012362	Vadose Zone Soil	MAAFGRSSVFVVCIAVFSTLLLQNMHHDAMLEGIPSGKTRVLDLSYAINDKL
Ga0137361_111854822	3300012362	Vadose Zone Soil	MSAVGRSGVLALCIAALITMFPDKPRQNSMLEGIPSGKTRVLDLSYAINDKLVPWPGDERFFEA
Ga0137390_101037971	3300012363	Vadose Zone Soil	MAVIGRSGFLVVCLAALSALFLQNMRHDSMLDGVPSGKTRVLDLSYAINDKLV
Ga0137390_111877662	3300012363	Vadose Zone Soil	MALISRSGFLVVCLAAFSALFIQNMHHDSMLEGVPSGKTRVLDLSYAINDKLVPWPGDEKVFEAKVN
Ga0137390_113414001	3300012363	Vadose Zone Soil	MSAVGRSAVLATCAAALMILHPQSPRQDSMLEGIPSGKTRLLDLSYTISDKLVPWPGDEKFFEAKV
Ga0137358_101871704	3300012582	Vadose Zone Soil	MAVISRSGFLVVCLAALSALFIQNMRHDSMLEGIPSGKTRVLDLSYAINDKLV
Ga0137398_108650252	3300012683	Vadose Zone Soil	MAVISRSGFLVVCLAALSAFFTQNMRHDSMLEGIPSGKTRVLDLSYAIN
Ga0137395_100594761	3300012917	Vadose Zone Soil	MAAVGRSSFLVVSFVVLTALFSQNMRYDSKLEGIPSGKTRVLDLSYAINDKLVPW
Ga0137396_107029951	3300012918	Vadose Zone Soil	MGALGRSSIFAVCFALLIALLSQNTHPDSMLEGVPSGKTRVLDLSYAINDKLVPWPGDERFFEATVNARVE
Ga0137396_110877621	3300012918	Vadose Zone Soil	MAAFGRSNIFVVCFALFLALLSQNAHRDSMLEGVPSGKTRVLDLSYAINDKLVPWPGD
Ga0137359_104311103	3300012923	Vadose Zone Soil	MSAVGRSGALAFCIAALMTMFPDKPRQNPMLEGIPSGKTRVLDLSYAINDKLVPWPGD
Ga0137413_103740653	3300012924	Vadose Zone Soil	MAAVARSSFLVACFVVLIALFSQNMRYDSKLEGIPSGKTRVLDLSYAINDKLVPWPGDEKYFEANV
Ga0137413_103853681	3300012924	Vadose Zone Soil	MAVISRSGFLVVCLAALSALFIQNMRHDSMLEGIPSGKTRVLDLSYAINDKLVPWPGDEKFF
Ga0137419_106607711	3300012925	Vadose Zone Soil	MAAFGRSGLFVVCIALLSMLLPQNARHDSMLDGVPSGKTRVLDLSYAISDKLVPWPGDEK
Ga0137416_111851581	3300012927	Vadose Zone Soil	MSVPGRSVIFLFCVASLMSVLPNNQAQELKLQGIPSGKTRVLDLSYAISDKLVPWPGDEKWFEAK
Ga0137407_121596451	3300012930	Vadose Zone Soil	MAAVARSSFLVACFVVLIALFSQNMRYDSKLEGIPSGKTRVLDLSYAINDNLVPWPGDEK
Ga0134077_105806251	3300012972	Grasslands Soil	MATTGRSGIFAVCFAALTALVTQTPRHDSMLEGVPSGKTRVLDLSYAINDKLVP
Ga0137411_12449551	3300015052	Vadose Zone Soil	MSAVGRSCVLALCIAALMTMFPDKPRQNSMLEGIPPGKTRVLDLSYAINDKLVPWPGDEKFFVAKVKATTEK
Ga0137411_12672611	3300015052	Vadose Zone Soil	MSAVGRSGVLALCIAALITMFPDKPRQNSMLEGIPSGKTRVLDLSYAINDKLVPWPGDERFFEAKVNA
Ga0137420_13497561	3300015054	Vadose Zone Soil	MAAFGRSGLFVVCIALLSMLLPQNTRHDSMLEGVPSGKTRVLDLSYAISGKLVPWPGDEKFF
Ga0137412_101910391	3300015242	Vadose Zone Soil	MAAFGRSGLFVVCIALLSMLLPQNARHDSMLDGVPSGKTRVLDLSYAINDKLVPWPGDEKFFEA
Ga0187815_101132801	3300018001	Freshwater Sediment	VDLYGRLGFAAVSLAALLVFFPDASNDRVKLEGIPTGKTRVLDLSYAISDKLVPWPGDGKFFEAKVNATIEKDGYFTRSFWMLE
Ga0187804_105830662	3300018006	Freshwater Sediment	VDLYGRLGFAAVSLAALLVFFPDASNDRVKLEGIPTGKTRVLDLSYAISDKLVPWPGDGKFFEAKVNATIEKDGYF
Ga0066667_121147592	3300018433	Grasslands Soil	MAAIGRAGIVVVILAALSMFSLHKDHNDSTPEGVPSKARILDLSYAINDKLVPWPGDEKFFEAKVNATIEKN
Ga0179594_100517411	3300020170	Vadose Zone Soil	MSAVGRSGVLASFAVALMILLPQSSRQNSMLEGIPSGKTRVLDLSYAINDKLVPWPGDE
Ga0179594_103423231	3300020170	Vadose Zone Soil	MAAVARSSFLVACFVVLIALFSQNMRHDSKLEGIPSGKTRVLDLSYAINDKLVP
Ga0179592_100365031	3300020199	Vadose Zone Soil	MASFGRSGILVVCLAGLSALFYQNAHHDSILEGIPTGKTPVLDLSYAINDKLVPWPGDAKFFEAKVNATIEKNGYFTRSFWMLEHYGSH
Ga0215015_104078271	3300021046	Soil	MAVVGRSSIIYVCLTACMTLLPQNPHKDDVLEGVPSGKTRVIDLSYAIND
Ga0210404_106055142	3300021088	Soil	MGAVGRSSIFAVCFALLFALLSQNTHHDSMLEGVPSGKTRVLDLSYAINDKLVAWPG
Ga0210400_115453101	3300021170	Soil	MASFGRSSILVVCFAALSAFLFQNAHHDSILEGIPAGKTRVLDLSYAISDKLVPWPGDAKFFEAKVNATIEKNGYFT
Ga0210405_101826904	3300021171	Soil	MAALGRLGILTVGLAALVSLFPQNGRQDSMLEGIPSGKTRVLDLSYAINDKLVPWPG
Ga0210405_108207382	3300021171	Soil	MAAIGRSGIFVACFAVLLTLFSQNTHRDSMLEGIPSGKTRVLDL
Ga0210396_100058301	3300021180	Soil	MAALGRWGIFAVGLAALVSLFPQNSRQDSMLEGIPSGKTRVVDLSYAINDKLVPWPGDAK
Ga0210409_117246782	3300021559	Soil	MASFGRSSILVVCLAALSAFFFQNAHDDSILKGIPTGKTRVLDLSYAISDKLVPWPGDVKFFEAKVNATIEKNGYFT
Ga0242654_102074531	3300022726	Soil	MGAVGRSGVFFVCVAALMTLVPQNPRRDSMLERIPSGKTRVLDLSYAISDKLVPWPGDEKFFEAKVNAT
Ga0179589_102969691	3300024288	Vadose Zone Soil	MAVVGRSSFLIVYFAAVSTFLLQNLHNHSTMEGIPSGKTRVLDLSYAINDKLVPWPGDEKFFEAKINA
Ga0137417_11502402	3300024330	Vadose Zone Soil	MAAFGRSNIFAVCFALFLALLSQNAHHDSMLEGVPSGKTRVLDLSYAINDK
Ga0209155_10114217	3300026316	Soil	MAAIGRASIVVVILAALSMFSLHKDHNDSTPEGVPSKARILDLSYAINDKLVPWPGDEKFFEAKVNAT
Ga0209155_11233702	3300026316	Soil	MAAIGRASIVVVILAALSMFSLRKDHNDSTPEGVPSPKARILDLSYAINDKLVPWPGDEKFFEAKVNAT
Ga0209471_12763892	3300026318	Soil	MAAFGRSGTFIVCLAVLFTLLPQNTHHHTMLEGIPSGKTRVLDLSYAISDKLVP
Ga0209647_10827084	3300026319	Grasslands Soil	MAVVGRSSFLIVCFAAVSTFLLQNMHNHSTMEGIPSGKTRVLDLSYAINDKLVPWPGDEKFFEAKVNAS
Ga0209804_10379101	3300026335	Soil	MAAFGRSGTFIVCLAVLFTLLPQNTHHHTMLEGIPSGKTRVLDLSYAISDKLVPWPGDEKFFEAKVNASIEK
Ga0257176_10249691	3300026361	Soil	MAAFGRSNILVLCLALFFALRSQNTHHDSVLEGVPSGKTRVLDLSYAINDKLVPW
Ga0257179_10082663	3300026371	Soil	MAAFGRSGLFVVCIALLSMLLPQNARHDSMLDGVPSGKARVLDLSYAINDKLVPWPG
Ga0257158_11352412	3300026515	Soil	MAAFGRSGLFVVCIALLSMLLPQNAHRDSMLDGVPSGKTRVLDLSYAISDKLVPWPGDEKFFEAKVN
Ga0209805_12108341	3300026542	Soil	MAAIGRASIAVVILAALSMFSLRKDHNDSTPEGVPSPKARILDLSYAINDKLVPWPGDEKFFEAKVNATIE
Ga0209474_101520044	3300026550	Soil	MAASGRSGPFIVCLAVLFTLLSQNTHHHAMLEGIPSGKTRVLDLSYAISDKLVPWPGDEKFFEAKVNASI
Ga0209648_103076281	3300026551	Grasslands Soil	MVAIGRSSIFAVCFALLIAFLSQNTHHDSMLEGVPSGKTQVLDLSYAINDKLV
Ga0209648_104278291	3300026551	Grasslands Soil	MAAFGRSGLFVVCIALLSMLLPQNARHDSMLDGVPSGKTRVLDLSYAISDKL
Ga0209648_105859812	3300026551	Grasslands Soil	MAVIGRSGFLVVCLAALSALFLQNMHHDSMLEGVPSGKTRVLDLSYAINDKLVPWP
Ga0179593_10754893	3300026555	Vadose Zone Soil	MAAFGRSGLFVVCIALLSMLLPKNARHDSMLEGVPSGKDTCNWHLSYAI
Ga0179593_11658113	3300026555	Vadose Zone Soil	MAVVGRSSFLIVYFAAVSTFLLQNLHNHSTMEGIPSGKTRVLDLSYAISDKLVPWPGDEKFFEAK
Ga0207948_10102091	3300027174	Forest Soil	MSAVGRSGVIASCVFAFMTLYPQNPRGDAMLEGVPSGKTRVVDLTYAISDKLV
Ga0209117_11627701	3300027645	Forest Soil	MGAVGRSGIFVVLIAALMSLRPQNPHPDSMLEGIPSGKTRVLDLSYAINDKLV
Ga0209009_10507293	3300027667	Forest Soil	MAAFGRPNIFAVSFVLLFALLSQNMHHDSMLEGVPSGKTRVIDLSYAINEKLVPWPGDEKFFEA
Ga0209701_107156712	3300027862	Vadose Zone Soil	MAVIGRSGLLVVCLAALSTLFMQNMHRDSMLEGVPSGKTRVLDLSYAINDKLVAWPGDE
Ga0209283_101695914	3300027875	Vadose Zone Soil	MATIGRSGIFAVCFAALTALVTQTPRQDAMLEGVPSGKTRVLDLSYAINDKLVPWPGDGKFFEAKVNATIEKNGYFTRS
Ga0209590_110253072	3300027882	Vadose Zone Soil	MATIGRSGIFAVCFAALTALVTQTPRHDSMLEGIPSGKTRVLDLSYAIND
Ga0137415_102240251	3300028536	Vadose Zone Soil	MAVIGRSGLLVFCLAALSTLFLQNMHRDSMLEGVPSGKTRVLDLSYAINEKLVAWPGDEKVFEAK
Ga0307308_100463584	3300028884	Soil	MAAFGRSNIFAVCFALFLALLSQNAHHDSMLEGVPSGKTRVLDLSYAIND
Ga0307479_106470893	3300031962	Hardwood Forest Soil	MASLGRSGIFVVCLGALSALFFQYAHHDSILEGIPAGKTRVLDLSYAINDKLVPWPGDVKFFEVKVNATIEKNGYFTRSFWMLEHYGTHLD
Ga0307471_1002162381	3300032180	Hardwood Forest Soil	MSAIGRCGVLATCAVALMTLLPQDSRQNSMLEGIPSGKTRVIDLSYAINDKLVPWPGDEKFFEAK
Ga0307471_1005922001	3300032180	Hardwood Forest Soil	MASFGRSGILVVCFAALSAFLFQNAHHDSILEGIPAGKTRVLDLSYAINDKLVPWLGDAKFFEAKVNATIEKNGYFTRSFWMLEHYGT
Ga0307471_1018699552	3300032180	Hardwood Forest Soil	MAAFGRSSIFLVCFAFLSTMLLQNMRRDSLLEGIPSGKTRVLDLSYAISDKLVPWPGDEKFFEAKVNATIEKN
Ga0307472_1001715194	3300032205	Hardwood Forest Soil	MASFGRSSILVVCFAALSAFLFQNAPHDSILEGIPAGKTRVLDLSYAISDKLVPWPGDAKFFEAKVNATIEKNG
Ga0307472_1023897271	3300032205	Hardwood Forest Soil	MSAVGRSGVLALCVAALMTLLPDKPRQNSMLEGIPSGKTRVLDLSYAINDKLVPWPGDGKFFE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters