Metagenome / Metatranscriptome Family F072120

Overview

Basic Information

• Family ID: F072120
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 121
• Average Sequence Length: 40 residues
• Representative Sequence: LTLSAGHAVTYFTSPTTIVYELILDDLVYGTLDAENVLG
• Number of Associated Samples: 92
• Number of Associated Scaffolds: 121

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 13.22 %
• % of genes from short scaffolds (< 2000 bps): 12.40 %
• Associated GOLD sequencing projects: 87
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.18

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (86.777 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater (22.314 % of family members)
• Environment Ontology (ENVO): Unclassified (47.934 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (43.802 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 0.00%
  β-sheet: 2.99%
  Coil/Unstructured: 97.01%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF01464	SLT	2.48
PF16778	Phage_tail_APC	1.65

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.78 %
All Organisms	root	All Organisms	13.22 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.78 %
Viruses	superkingdom	All Organisms → Viruses	12.40 %
cellular organisms	root	All Organisms → cellular organisms	0.83 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.78 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	10.74 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.65 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.83 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.78 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	10.74 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.78 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	10.74 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.65 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.78 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	10.74 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.65 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.78 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	9.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.65 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.78 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	9.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.65 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300004126|Ga0066179_10011744	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1668
3300005805|Ga0079957_1203037	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	954
3300006802|Ga0070749_10085634	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1878
3300007214|Ga0103959_1140502	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1592
3300009149|Ga0114918_10181805	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1233
3300009149|Ga0114918_10202331	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1153
3300009161|Ga0114966_10127691	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1678
3300021376|Ga0194130_10245393	All Organisms → Viruses → Predicted Viral	1027
3300024262|Ga0210003_1102912	All Organisms → Viruses → Predicted Viral	1295
3300024262|Ga0210003_1148756	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1006
3300031566|Ga0307378_10235656	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1772
3300032116|Ga0315903_11189909	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	515
3300034072|Ga0310127_143654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	953
3300034095|Ga0335022_0029352	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3640
3300034102|Ga0335029_0163543	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1512
3300034166|Ga0335016_0162893	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1502

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	90.08%
Terrestrial	Environmental → Terrestrial	9.92%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	66.94%
Marine	Environmental → Aquatic → Marine	20.66%
Soil	Environmental → Terrestrial → Soil	8.26%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	1.65%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.65%
Unclassified	Environmental → Aquatic → Unclassified	0.83%

Type

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	42.15%
Lentic	Environmental → Aquatic → Freshwater → Lentic	13.22%
Coastal	Environmental → Aquatic → Marine → Coastal	13.22%
Clay	Environmental → Terrestrial → Soil → Clay	8.26%
Ice	Environmental → Aquatic → Freshwater → Ice	6.61%
Oceanic	Environmental → Aquatic → Marine → Oceanic	6.61%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	2.48%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.65%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.65%
River	Environmental → Aquatic → Freshwater → River	0.83%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.83%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.83%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	0.83%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified	0.83%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	37.19%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	13.22%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	10.74%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	8.26%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	6.61%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	6.61%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	4.96%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	2.48%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	2.48%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.65%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.65%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.83%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.83%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.83%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	0.83%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified → Unclassified	0.83%

Habitat

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	22.31%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	11.57%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	9.09%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	8.26%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	6.61%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	6.61%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	5.79%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	4.96%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	4.13%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.13%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	2.48%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	2.48%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.65%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	1.65%
Fracking Water	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water	1.65%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.83%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.83%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	0.83%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.83%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.83%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	0.83%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	0.83%
Meromictic Pond	Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond	0.83%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
2022920000	Saline water microbial communities from Qinghai Lake, Tibetan Plateau - High mountain lake (unassembled)	Environmental
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental
3300004126	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (version 2)	Environmental
3300005805	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA	Environmental
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental
3300006803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA	Environmental
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental
3300006867	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA	Environmental
3300006869	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA	Environmental
3300007214	Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface layer) 9 sequencing projects	Environmental
3300007516	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01	Environmental
3300007523	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-03	Environmental
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental
3300007541	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG	Environmental
3300007722	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (megahit assembly)	Environmental
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental
3300009149	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG	Environmental
3300009161	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG	Environmental
3300009180	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG	Environmental
3300009181	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG	Environmental
3300009470	Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, surface; DNA IDBA-UD	Environmental
3300010370	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNA	Environmental
3300012012	Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1m	Environmental
3300012017	Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1m	Environmental
3300012708	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES113 metaT (Metagenome Metatranscriptome)	Environmental
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental
3300013005	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG	Environmental
3300013010	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNA	Environmental
3300013122 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10.3m	Environmental
3300013126 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m	Environmental
3300013131 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m	Environmental
3300013133 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment s1_kivu2a2	Environmental
3300013137 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_11.1m	Environmental
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental
3300017716	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D	Environmental
3300017723	Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N	Environmental
3300017754	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D	Environmental
3300017774	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D	Environmental
3300017778	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D	Environmental
3300017780	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N	Environmental
3300017991	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_2 metaG	Environmental
3300020162	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1	Environmental
3300020190	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015013 Mahale N5 surface	Environmental
3300020193	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015053 Kigoma Offshore 120m	Environmental
3300020197	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015037 Kigoma Deep Cast 65m	Environmental
3300020200	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015020 Mahale Deep Cast 50m	Environmental
3300020551	Freshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes)	Environmental
3300020566	Freshwater microbial communities from Lake Mendota, WI - 13SEP2009 deep hole epilimnion (SPAdes)	Environmental
3300021141	Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion	Environmental
3300021376	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015050 Kigoma 12 surface	Environmental
3300021424	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015009 Mahale N1 surface	Environmental
3300021963	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D	Environmental
3300022198	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)	Environmental
3300022200	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)	Environmental
3300022752	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB	Environmental
3300024262	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)	Environmental
3300025687	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)	Environmental
3300027491	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepB_8d	Environmental
3300027608	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)	Environmental
3300027770	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)	Environmental
3300027970 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14.5m	Environmental
3300027972	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015 (SPAdes)	Environmental
3300027976	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)	Environmental
3300031565	Soil microbial communities from Risofladan, Vaasa, Finland - UN-2	Environmental
3300031566	Soil microbial communities from Risofladan, Vaasa, Finland - UN-1	Environmental
3300031578	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2	Environmental
3300031772	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20	Environmental
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental
3300031885	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36	Environmental
3300031952	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40	Environmental
3300032046	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40	Environmental
3300032050	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122	Environmental
3300032116	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119	Environmental
3300032462	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (spades assembly)	Environmental
3300033979	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME30Aug2017-rr0003	Environmental
3300033993	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037	Environmental
3300034022	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058	Environmental
3300034061	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028	Environmental
3300034062	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045	Environmental
3300034063	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053	Environmental
3300034072	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A	Environmental
3300034095	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091	Environmental
3300034102	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112	Environmental
3300034103	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119	Environmental
3300034106	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131	Environmental
3300034111	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186	Environmental
3300034119	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166	Environmental
3300034120	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172	Environmental
3300034122	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2014-rr0181	Environmental
3300034166	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079	Environmental
3300034272	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156	Environmental
3300034374	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
QL_na_8126390	2022920000	Saline Water	GSGHRVTFFTAPTTIVSLLVLDDVVFGVLNADNVFRGKVGL
B570J40625_1007185693	3300002835	Freshwater	EHRLDFSTGHSVLYSTAPTTIVFELILNDALYGTIDTTNVLG*
Ga0066179_100117445	3300004126	Freshwater Lake	LTIEGLEHRLTLSAGHAVTYFTSPTTIVYELILNDLVYGTLDAENVLG*
Ga0079957_12030371	3300005805	Lake	VIDFNRGHTVTFYTSPTTIVYELILDDAVYGIMDSTNVLG*
Ga0070749_100856341	3300006802	Aqueous	NGHSIMYFTAQTTIVYELILGDAIYGIIDADNVLG*
Ga0070749_105242901	3300006802	Aqueous	ISLDGGHTITFYTADTTVVYYLVLDDLVYGVLDSTNVLG*
Ga0070749_106175442	3300006802	Aqueous	LDGGHTITFYTADTTVVYYLVLDDLVYGVLDSTNVLG*
Ga0075467_106881462	3300006803	Aqueous	EHYLDFSTGHRVLYSTAPTTIVYELILDDAVYGTIDTTNVLG*
Ga0075464_102849642	3300006805	Aqueous	TIEGLEHRLTLSAGHAVTYYTSPTTIVYELILDDITYGTLNAENVLG*
Ga0075476_100815841	3300006867	Aqueous	HELAVRAGHLMTFYTSPTTIVFELLLDDPTYGTLDGSNVLG*
Ga0075477_101677744	3300006869	Aqueous	IDVNRGHSVTYFTSPTIAVYELILDDLSFGIIDADNVLG*
Ga0103959_11405026	3300007214	Freshwater Lake	SGHRVTYYTSPTTIVYELILNDPIYGQLDSTNVLG*
Ga0105050_104943643	3300007516	Freshwater	SGGHTVTFYTSQQLILFNLILNDAVYGEMDSTNVLGA*
Ga0105050_105699132	3300007516	Freshwater	GHSVTFYTSQQLILFNLILNDAVYGEMDSTNVLGA*
Ga0105052_105004163	3300007523	Freshwater	GGHTVTFYTSQQLILFNLILNDAVYGEMDSTNVLGA*
Ga0099851_13657222	3300007538	Aqueous	SLDGGHTITFYTADTTVVYYLVLDDLVYGVLDSTNVLG*
Ga0099848_11830982	3300007541	Aqueous	SVEVITGDISLDGGHTLTFYTADTTVVYLLVLDDPVYGVLDSTNVLG*
Ga0105051_105446962	3300007722	Freshwater	ANGHTVSYYTSPTTIQYYLILDDPVYGVLDSNNVLG*
Ga0105091_106437192	3300009146	Freshwater Sediment	GHRITLFTSPTTLVFELILDDAVYGTLDAENVLG*
Ga0114918_101818051	3300009149	Deep Subsurface	ITVSGGHSLMFFTSPTVIVYELILDDLTFGILDAENVLG*
Ga0114918_102023311	3300009149	Deep Subsurface	EHRLTLSAGHAVTYFTSPTTIVYELILDDIVYGTLDEENVLG*
Ga0114918_102316191	3300009149	Deep Subsurface	LDFSTGHRVLYSTAPTTIVYELILDDAVYGTIDSTNVLG*
Ga0114918_107256542	3300009149	Deep Subsurface	EHAIDFANGHRVTFFTAPTVVVFELVLDDATFGTLDAENVLG*
Ga0114966_101276915	3300009161	Freshwater Lake	QFAQNLTIEGLEHRLTLSAGHAVTYYTAPTTIVYELILDDLVYGTLDAENVLG*
Ga0114979_104991442	3300009180	Freshwater Lake	HRLTLSAGHAVTYFTAPTTIVYELILDDLVYGTLDAENVLG*
Ga0114979_106776292	3300009180	Freshwater Lake	SAGHAVTYFTAQTTIVYELILDDLVYGTLDAENVLG*
Ga0114969_103670781	3300009181	Freshwater Lake	TLSAGHAVTYYTAPTTIVYELILDDLVYGTLDAENVLG*
Ga0126447_10502633	3300009470	Meromictic Pond	FSTGHRVLYSTAPTTIVYELILDDALYGTLDAENVLG*
Ga0129336_104084881	3300010370	Freshwater To Marine Saline Gradient	FDRGHTLRLSTSPTTIVYALILDDPVYGLLDTNALN*
Ga0153799_10124104	3300012012	Freshwater	HTITVSGGHSVMYFTSPTTIVYELILDDVVFGIIDADNVLG*
Ga0153799_10246501	3300012012	Freshwater	DLSTGHRITLFTSPTTLVYELILDDLIYGTIDTENVLG*
Ga0153801_10394241	3300012017	Freshwater	HEIDLSTGHRMTLFTSPTTLVFELILDDAVYGTIDTENVLG*
Ga0157595_11165161	3300012708	Freshwater	HRLDFSTGHSVLYSTAPTTIVYELILDDALYGTIDTTNALG*
Ga0164293_105567641	3300013004	Freshwater	HYLDFSTGHRVLYSTAPTTIVFELILDDAVYGTLDAENVLG*
Ga0164292_104981643	3300013005	Freshwater	LTLSAGHAVTYFTAPTTIVYELILDDAVYGTLDEDNVLG*
Ga0129327_109217692	3300013010	Freshwater To Marine Saline Gradient	ITGDISLDGGHTITFYTADTTVVYYLVLGDPTYGVMDSTNVLG*
(restricted) Ga0172374_12661871	3300013122	Freshwater	GIIDINAGHTLTFYTTDTTVLYLLILDDPVFGLLDSTNALG*
(restricted) Ga0172367_103078001	3300013126	Freshwater	NRGHTVTFYTSPTTIVYELILDDAIYGVIDSNNVLG*
(restricted) Ga0172373_103566821	3300013131	Freshwater	IDGVIDLNAGHTLTFYTSNTTVVYLLILDDPVLGVLDSTNVLG*
(restricted) Ga0172362_104356191	3300013133	Sediment	QAVIDFIRGHTVTFYTSPTTIVYELILDDAVYGVIDSDNVLG*
(restricted) Ga0172375_103786432	3300013137	Freshwater	GHAITLFTAPTIVVYELILDDLTFGIIDADNVLGT*
Ga0177922_101325272	3300013372	Freshwater	EHRLTLSAGHAVTYFTSPTTVVYELILNDIVYGTLDAENVLG*
Ga0181350_11173611	3300017716	Freshwater Lake	LTLSAGHAVTYFTSPTTIVYELILDYIVYGTLDEDNVLG
Ga0181362_10410272	3300017723	Freshwater Lake	EELTVEGINGEIQLDGGHTLTFYTADTTVVTVLILDDVTFGVLDSTNVLG
Ga0181362_11139102	3300017723	Freshwater Lake	EGVEHAIDFGSGHRVTFFTAPTTIVYELILDDVTYGIIDAENVLG
Ga0181344_10331014	3300017754	Freshwater Lake	GIEHRLDFSTGHSVLYSTAPTTIVYELILNDAVYGTIDTTNVLG
Ga0181344_10452074	3300017754	Freshwater Lake	LDFSTGHRVLYSTAPTTIVYELILDDAVYGTLDAENVLG
Ga0181358_11218171	3300017774	Freshwater Lake	GVEHAIDFSSGHRVTFFTAPTTIVYLLILDDITFGTLDAENVLG
Ga0181349_10653881	3300017778	Freshwater Lake	LSVEGVEHAIDFGSGHRVTFFTAPTTIIYELILNDSTFGTLDAENVLG
Ga0181349_11422762	3300017778	Freshwater Lake	EHRLTLSAGHAVTYFTSPTTIVYELILDDLVYGTLDEENVLG
Ga0181349_11819102	3300017778	Freshwater Lake	GSGHRVTFFTAPTTIVYELILNDSVFGTIDTENVLG
Ga0181346_12872791	3300017780	Freshwater Lake	RLTLSAGHAVTYFTSPTTIVFELILDDLVYGTLDEDNVLG
Ga0180434_103862471	3300017991	Hypersaline Lake Sediment	IEHYIDTTAGHVVRFYTSAVTIVYELILDDSVYGVLDSTNVLG
Ga0211735_102069062	3300020162	Freshwater	LTLSAGHAVTYFTSPTTIVYELILDDLVYGTLDAENVLG
Ga0194118_105594962	3300020190	Freshwater Lake	GETVTFFTAPTSIVFELLLDDATKGKMDSTNVLGA
Ga0194131_104200131	3300020193	Freshwater Lake	INAGHTLTFYTSDTTVLYLLILDDPVYGLLDSTNVLG
Ga0194128_103139462	3300020197	Freshwater Lake	DFNRGHTVTFYTAPTTVVYDLILDDPVYGVIDSTNVLG
Ga0194121_101627142	3300020200	Freshwater Lake	RGHTVTFYTAPTTIIYDLILDDPVYGVMDADNVLG
Ga0208360_10072895	3300020551	Freshwater	FSTGHKVLYSTAPTTIVFELILDDAVYGTLDAENVLG
Ga0208222_10518402	3300020566	Freshwater	TGHRVTFFTSPTVVVFELILDDAIYGILDADNVLG
Ga0214163_10471503	3300021141	Freshwater	GIEHRLDFSTGHSVLYSTAPTTIVFELILDDAVYGTLDAENVLG
Ga0194130_102453933	3300021376	Freshwater Lake	EGITGNIDLNAGHTLTFYTSDTTVLYLLILDDPVYGVLDSTNALG
Ga0194117_100326288	3300021424	Freshwater Lake	EFNRGHTVTFYTAPTTIIYDLILDDPVYGVMDADNVLG
Ga0222712_101679914	3300021963	Estuarine Water	AIDFANGHRVTFYTAPTTIVYELILDDLTYGILDAENVLG
Ga0196905_11856032	3300022198	Aqueous	DISLDGGHTLTFYTADTTVVYLFILDDPLYGVLSTTNALG
Ga0196901_11217482	3300022200	Aqueous	EGISGDISLDGGHTITFYTADTTVVYYLVLDDLVYGVLDSTNVLG
Ga0196901_11717622	3300022200	Aqueous	ELSIEGIEHYLDFSTGHRVLYSTAPTTIVYELILDDAVYGTLDADNVLG
Ga0214917_102070971	3300022752	Freshwater	ITVNNGHSVMYFTAPTTIVYELILDDLTYGIIDSTNVLG
Ga0210003_11029125	3300024262	Deep Subsurface	GVEHAIDFANGHRVTFFTAPTTVVYLLTLDDATFGVLDSSNVLG
Ga0210003_11468794	3300024262	Deep Subsurface	SAGHAVTYFTSPTTIVYELILDDLTYGTLDEENVLG
Ga0210003_11487561	3300024262	Deep Subsurface	LTLSAGHAVTYFTSPTTIVYELILDDLTYGTLDEENVLG
Ga0210003_12804212	3300024262	Deep Subsurface	SGGHSLMFFTSPTVIVYELILDDLTFGILDAENVLG
Ga0208019_10930621	3300025687	Aqueous	IEHYLDFSTGHRVLYSTAPTTIVFELILDDALYGTLSTTNALG
Ga0255097_10680021	3300027491	Freshwater	SIEGVEHAIDFASGHRVTFFTAPTTIVYELILDDVTYGIIDADNVLG
Ga0208974_11228932	3300027608	Freshwater Lentic	EIDLSTGHRITLFTSPTTLVFELILDDSVYGRIDEENVLG
Ga0209086_103149632	3300027770	Freshwater Lake	IEGLEHRLTLSAGHAVTYYTAPTTIVYELILDDLVYGTLDAENVLG
(restricted) Ga0247837_12962932	3300027970	Freshwater	AIDFDSGHRVTLFTAPTTIVYELVLNDAVFGTIDAENVLG
Ga0209079_102467582	3300027972	Freshwater Sediment	EIDLFTGHRITLFTSPTTLVFELILDDLVYGTLDAENVLG
Ga0209702_102943091	3300027976	Freshwater	GHSVTFYTSQQLILFNLILNDAVYGEMDSTNVLGA
Ga0307379_103141586	3300031565	Soil	GIEHYLDFSTGHRVLYSTAPTTIVYELILDDAVYGTLDEENVLG
Ga0307378_102356561	3300031566	Soil	SSGHSLMFFTSPTVIVYELILDDAVFGILDAENVLG
Ga0307378_102984871	3300031566	Soil	VGGGHRVEYFTSPTVLVFELILDDAIYGIIDSTNVLG
Ga0307378_106944011	3300031566	Soil	LSVEGVEHAIDFANGHRVTFFTAPTTVVFELVLDDATFGTIDTTNVLG
Ga0307378_108893351	3300031566	Soil	LSTGHRITLFTSPTTLVFELILDDLVYGTLDEENVLG
Ga0307378_110399081	3300031566	Soil	EGIEHYLDFSTGHRVLYSTAPTTIVFELILDDAVYGILDAENVLG
Ga0307378_114180161	3300031566	Soil	EHYLDFSTGHRVLYSTAPTTIVYELILDDAQYGTIDTTNVLG
Ga0307376_104565551	3300031578	Soil	DFANGHRVTFFTAPTTVVFELVLDDATFGTLDAENVLG
Ga0307376_105387651	3300031578	Soil	SGGHSLMFFTSPTVIVYELILDDAVFGILDAENVLG
Ga0307376_108291651	3300031578	Soil	ITVSGGHSLMFFTSPTVIVYELILDDLTFGILDAENVLG
Ga0315288_107084063	3300031772	Sediment	TLDGHRVALFTSPTTIVYELILDNATYGTIDTTNVLG
Ga0315909_104030111	3300031857	Freshwater	EGIEHYLDFSTGHRVLYSTAPTTIVYELILNDAVYGTIDTTNVLG
Ga0315285_109263971	3300031885	Sediment	NLTVEGLEHRLTLSAGHAVTYFTAPTTIVYELILDDAVYGTLDEDNVLG
Ga0315294_109851672	3300031952	Sediment	LSAGHAVTYFTAPTTIVYELILDDAVYGTLDEDNVLG
Ga0315289_104320952	3300032046	Sediment	IQHEIDLSTGHRITLFTSPTTLVFELILDDLVYGTIDTENVLG
Ga0315289_106460341	3300032046	Sediment	SDGHRITLFTSPTTLVYELILDDLIYGTIDTENVLG
Ga0315906_100418831	3300032050	Freshwater	GIEHYLDFSTGHRVLYSTAPTVIVYELILDDAVYGTLDAENVLG
Ga0315903_111899092	3300032116	Freshwater	HIITVGAGHSILLSTAPTTIVFELILDNALYGTIDTENVLG
Ga0335396_102764763	3300032462	Freshwater	RINVANGHTVSYYTSPTTIQYYLILDDPVYGVLDSNNVLG
Ga0335396_105311163	3300032462	Freshwater	INVANGHTVSYYTSPTTIQYYLILDDPVYGVLDSNNVLG
Ga0335396_106652881	3300032462	Freshwater	ANGHTVSYYTSPTTIQYYLILDDPVYGVLDSNNVLG
Ga0334978_0121489_1192_1314	3300033979	Freshwater	YLDFATGHRVLYSTAPTTIVYELILDNAVYGTLDAENVLG
Ga0334994_0263674_3_119	3300033993	Freshwater	TLSAGHAVTYFTSPTTIVYELILDDLVYGTLDEENVLG
Ga0335005_0767968_342_500	3300034022	Freshwater	FAEILTVEGLEHRLTLSAGHAVTYFTAPTTIVYELILNDAVYGTLDEDNVLG
Ga0334987_0750270_3_116	3300034061	Freshwater	LSDGHRITLFTSPTTLVFELVLDDLIYGITDADNVLG
Ga0334995_0028128_4751_4882	3300034062	Freshwater	LEHRLTLSAGHAVTYFTAPTTIVYELILNDPVYGTLNEENVLG
Ga0334995_0567628_3_128	3300034062	Freshwater	HAIDFGSGHRVTFFTAPTTIVYELILDDLTYGIIDAENVLG
Ga0335000_0091656_3_140	3300034063	Freshwater	EGIEAVIDFAAGHTVRFYTNDVTIVYELILDDVTYGIIDAENVLG
Ga0310127_143654_841_951	3300034072	Fracking Water	SGGHQITFFTSPTVIVYELILDDSVYGVLDDSNVLG
Ga0310127_218830_1_123	3300034072	Fracking Water	VIDVNRGHTVTFYTSPTIIVFELILDDAVYGLLDSTNVLG
Ga0335022_0029352_2_130	3300034095	Freshwater	EHRLTLSAGHAVTYFTSPTTIVYELILNDAVYGTLDEDNVLG
Ga0335029_0163543_3_122	3300034102	Freshwater	LDFSTGHSVLYSTAPTTIVYELILDDAVYGTLDAENVLG
Ga0335029_0240553_1063_1176	3300034102	Freshwater	VNNGHSVMYFTAPTTIVYELILDDLTYGIIDSTNVLG
Ga0335030_0890644_403_513	3300034103	Freshwater	STGHRITLFTSPTTLVFELILDDLVYGTIDTENVLG
Ga0335036_0270674_1018_1140	3300034106	Freshwater	YLDFATGHRVLYSTSPTVIVYELILDNLTYGTLDQFNVLG
Ga0335063_0072846_1_129	3300034111	Freshwater	TGVINFSRGHTITYYTSPTTIVYELILDDAIYGVIDAQNVLG
Ga0335054_0221937_1009_1131	3300034119	Freshwater	RLDFSTGHSVLYSTAPTTIVYELILDDAVYGTLDAENVLG
Ga0335056_0344167_2_145	3300034120	Freshwater	SIEGIEHRLDFSTGHSVLYSTAPTTIVYELILDDAVYGTLDAENVLG
Ga0335060_0607736_428_547	3300034122	Freshwater	LTLSAGHAVTYFTAPTTIVYELILDDIVYGTLDQENVLG
Ga0335016_0162893_1374_1502	3300034166	Freshwater	EHYLDFSTGHRVLYSTASTTIVFELILDDAVYGTIDEENVLG
Ga0335049_0883942_353_511	3300034272	Freshwater	LAQELSIEGIEHRLDFSTGHSVLYSTAPTTIVYELILDDAVYGTLDAENVLG
Ga0348335_041271_1745_1885	3300034374	Aqueous	VEGITGDISLDGGHTITFYTADTTVVYYLVLDDLVYGVMDSTNVLG