Metagenome Family F072085

Basic Information
Family ID	F072085
Family Type	Metagenome
Number of Sequences	121
Average Sequence Length	45 residues
Representative Sequence	LKRIIEVVGTTHIGLTFHFGGLSQDKVLKSMERFARLVMPALR
Number of Associated Samples	112
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.17 %
% of genes from short scaffolds (< 2000 bps)	88.43 %
Associated GOLD sequencing projects	107
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Most Common Taxonomy
Group	Bacteria (52.893 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (8.264 % of family members)
Environment Ontology (ENVO)	Unclassified (28.099 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (33.058 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.48% β-sheet: 0.00% Coil/Unstructured: 53.52%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF01916	DS	12.40
PF01625	PMSR	11.57
PF09084	NMT1	4.13
PF01717	Meth_synt_2	3.31
PF09601	DUF2459	2.48
PF03795	YCII	2.48
PF02775	TPP_enzyme_C	2.48
PF02826	2-Hacid_dh_C	1.65
PF03401	TctC	0.83
PF13531	SBP_bac_11	0.83
PF07355	GRDB	0.83
PF04909	Amidohydro_2	0.83
PF02913	FAD-oxidase_C	0.83
PF00378	ECH_1	0.83
PF13683	rve_3	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG1899	Deoxyhypusine synthase	Translation, ribosomal structure and biogenesis [J]	12.40
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	11.57
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	4.13
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	4.13
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	3.31
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.48
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.83
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.83

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.89 %
Unclassified	root	N/A	47.11 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.89 %
Unclassified	root	N/A	47.11 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.89 %
Unclassified	root	N/A	47.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	14.05 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.11 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	10.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.11 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	10.74 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.83 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.11 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	9.92 %
Candidatus Entotheonella gemina	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	0.83 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.11 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	9.92 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	0.83 %
Candidatus Entotheonella gemina	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.11 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	9.92 %
Steroidobacter soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter soli	0.83 %
Candidatus Entotheonella gemina	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	0.83 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352025\|deepsgr__Contig_24790	Not Available	1286	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101848750	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1070539	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10151122	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10071365	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	750	Open in IMG/M
3300000891\|JGI10214J12806_10143539	Not Available	710	Open in IMG/M
3300000955\|JGI1027J12803_103087574	All Organisms → cellular organisms → Bacteria	1054	Open in IMG/M
3300003997\|Ga0055466_10104794	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	772	Open in IMG/M
3300004019\|Ga0055439_10197061	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300004057\|Ga0055496_10029564	All Organisms → cellular organisms → Bacteria	1073	Open in IMG/M
3300004463\|Ga0063356_100619305	Not Available	1468	Open in IMG/M
3300004463\|Ga0063356_102068471	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300004463\|Ga0063356_102175261	Not Available	844	Open in IMG/M
3300004480\|Ga0062592_101304301	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300004808\|Ga0062381_10244850	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300005218\|Ga0068996_10104054	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300005290\|Ga0065712_10001717	All Organisms → cellular organisms → Bacteria	6631	Open in IMG/M
3300005332\|Ga0066388_101938626	All Organisms → cellular organisms → Bacteria	1053	Open in IMG/M
3300005347\|Ga0070668_100064177	All Organisms → cellular organisms → Bacteria	2847	Open in IMG/M
3300005445\|Ga0070708_101846154	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	561	Open in IMG/M
3300005445\|Ga0070708_102223465	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300005457\|Ga0070662_101029646	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300005459\|Ga0068867_100535701	All Organisms → cellular organisms → Bacteria	1012	Open in IMG/M
3300005713\|Ga0066905_100479504	All Organisms → cellular organisms → Bacteria	1029	Open in IMG/M
3300005713\|Ga0066905_102293520	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300005719\|Ga0068861_100826879	Not Available	871	Open in IMG/M
3300005764\|Ga0066903_103591288	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	835	Open in IMG/M
3300005764\|Ga0066903_104354297	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300005840\|Ga0068870_11019500	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300005879\|Ga0075295_1027885	Not Available	694	Open in IMG/M
3300005885\|Ga0075284_1059314	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300005887\|Ga0075292_1001426	All Organisms → cellular organisms → Bacteria	2978	Open in IMG/M
3300005981\|Ga0081538_10299007	All Organisms → cellular organisms → Bacteria → Proteobacteria	592	Open in IMG/M
3300006806\|Ga0079220_10925709	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300006844\|Ga0075428_100556833	All Organisms → cellular organisms → Bacteria	1226	Open in IMG/M
3300006852\|Ga0075433_10108120	All Organisms → cellular organisms → Bacteria	2467	Open in IMG/M
3300006854\|Ga0075425_100550693	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1328	Open in IMG/M
3300006894\|Ga0079215_11515507	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300009111\|Ga0115026_11347880	Not Available	588	Open in IMG/M
3300009156\|Ga0111538_10153432	All Organisms → cellular organisms → Bacteria	2926	Open in IMG/M
3300009156\|Ga0111538_13193637	Not Available	571	Open in IMG/M
3300009162\|Ga0075423_10062188	Not Available	3865	Open in IMG/M
3300009162\|Ga0075423_11392016	Not Available	751	Open in IMG/M
3300009609\|Ga0105347_1406422	Not Available	586	Open in IMG/M
3300009777\|Ga0105164_10034551	All Organisms → cellular organisms → Bacteria	2767	Open in IMG/M
3300009820\|Ga0105085_1060149	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300010043\|Ga0126380_10103920	All Organisms → cellular organisms → Bacteria	1712	Open in IMG/M
3300010043\|Ga0126380_10373005	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	1048	Open in IMG/M
3300010047\|Ga0126382_12543204	Not Available	500	Open in IMG/M
3300010304\|Ga0134088_10077514	Not Available	1550	Open in IMG/M
3300010362\|Ga0126377_11479221	Not Available	753	Open in IMG/M
3300010398\|Ga0126383_12016379	Not Available	664	Open in IMG/M
3300011420\|Ga0137314_1152320	Not Available	564	Open in IMG/M
3300011439\|Ga0137432_1024456	All Organisms → cellular organisms → Bacteria	1755	Open in IMG/M
3300012034\|Ga0137453_1017812	Not Available	1099	Open in IMG/M
3300012133\|Ga0137329_1041800	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	592	Open in IMG/M
3300012189\|Ga0137388_10775924	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	889	Open in IMG/M
3300012208\|Ga0137376_10186067	All Organisms → cellular organisms → Bacteria	1794	Open in IMG/M
3300012209\|Ga0137379_11537283	Not Available	566	Open in IMG/M
3300012210\|Ga0137378_10162473	All Organisms → cellular organisms → Bacteria	2073	Open in IMG/M
3300012350\|Ga0137372_10502590	Not Available	902	Open in IMG/M
3300012493\|Ga0157355_1040223	Not Available	521	Open in IMG/M
3300012911\|Ga0157301_10095248	Not Available	865	Open in IMG/M
3300012930\|Ga0137407_10144212	All Organisms → cellular organisms → Bacteria	2097	Open in IMG/M
3300012931\|Ga0153915_11013191	All Organisms → cellular organisms → Bacteria → Proteobacteria	967	Open in IMG/M
3300012931\|Ga0153915_13334849	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300012948\|Ga0126375_10423687	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	969	Open in IMG/M
3300013306\|Ga0163162_10153518	All Organisms → cellular organisms → Bacteria	2421	Open in IMG/M
3300014154\|Ga0134075_10231195	Not Available	798	Open in IMG/M
3300014254\|Ga0075312_1000399	All Organisms → cellular organisms → Bacteria	6453	Open in IMG/M
3300014255\|Ga0075320_1039126	Not Available	827	Open in IMG/M
3300014497\|Ga0182008_10387503	Not Available	748	Open in IMG/M
3300014968\|Ga0157379_10627909	Not Available	1004	Open in IMG/M
3300015373\|Ga0132257_100316393	Not Available	1879	Open in IMG/M
3300015374\|Ga0132255_101474162	Not Available	1029	Open in IMG/M
3300017936\|Ga0187821_10516546	Not Available	500	Open in IMG/M
3300018000\|Ga0184604_10002211	All Organisms → cellular organisms → Bacteria	3033	Open in IMG/M
3300018028\|Ga0184608_10020255	All Organisms → cellular organisms → Bacteria	2406	Open in IMG/M
3300018052\|Ga0184638_1218691	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300018056\|Ga0184623_10327548	Not Available	689	Open in IMG/M
3300018072\|Ga0184635_10042613	All Organisms → cellular organisms → Bacteria	1738	Open in IMG/M
3300018081\|Ga0184625_10266170	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	897	Open in IMG/M
3300018089\|Ga0187774_10491222	Not Available	771	Open in IMG/M
3300018422\|Ga0190265_12633807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter soli	600	Open in IMG/M
3300018920\|Ga0190273_11986850	Not Available	538	Open in IMG/M
3300019377\|Ga0190264_11835235	Not Available	547	Open in IMG/M
3300021063\|Ga0206227_1107282	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300021081\|Ga0210379_10557037	All Organisms → cellular organisms → Bacteria → Proteobacteria	511	Open in IMG/M
3300021344\|Ga0193719_10169358	Not Available	939	Open in IMG/M
3300025537\|Ga0210061_1005419	Not Available	1999	Open in IMG/M
3300025550\|Ga0210098_1027368	Not Available	883	Open in IMG/M
3300025558\|Ga0210139_1083231	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300025911\|Ga0207654_10486366	Not Available	870	Open in IMG/M
3300025930\|Ga0207701_11056691	Not Available	674	Open in IMG/M
3300025931\|Ga0207644_11136204	Not Available	656	Open in IMG/M
3300026118\|Ga0207675_100889516	Not Available	906	Open in IMG/M
3300026536\|Ga0209058_1095942	Not Available	1514	Open in IMG/M
3300027252\|Ga0209973_1055412	Not Available	603	Open in IMG/M
3300027543\|Ga0209999_1040270	Not Available	875	Open in IMG/M
3300027778\|Ga0209464_10065074	Not Available	1215	Open in IMG/M
3300027831\|Ga0209797_10228771	Not Available	785	Open in IMG/M
3300027874\|Ga0209465_10119858	All Organisms → cellular organisms → Bacteria	1297	Open in IMG/M
(restricted) 3300028043\|Ga0233417_10659431	Not Available	502	Open in IMG/M
3300028802\|Ga0307503_10333869	Not Available	772	Open in IMG/M
3300030006\|Ga0299907_10662587	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300030620\|Ga0302046_10224542	Not Available	1545	Open in IMG/M
3300031229\|Ga0299913_11392394	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	657	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1202896	Not Available	501	Open in IMG/M
3300031740\|Ga0307468_100710532	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	842	Open in IMG/M
3300031744\|Ga0306918_10402873	Not Available	1066	Open in IMG/M
3300031820\|Ga0307473_10916731	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	634	Open in IMG/M
3300032012\|Ga0310902_11192852	Not Available	536	Open in IMG/M
3300032017\|Ga0310899_10239022	Not Available	821	Open in IMG/M
3300032075\|Ga0310890_10641835	Not Available	826	Open in IMG/M
3300032157\|Ga0315912_10131156	Not Available	1964	Open in IMG/M
3300033412\|Ga0310810_10053642	All Organisms → cellular organisms → Bacteria	4904	Open in IMG/M
3300033414\|Ga0316619_11895822	Not Available	541	Open in IMG/M
3300033486\|Ga0316624_11701603	Not Available	582	Open in IMG/M
3300034147\|Ga0364925_0104650	Not Available	1006	Open in IMG/M
3300034178\|Ga0364934_0344807	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	564	Open in IMG/M
3300034820\|Ga0373959_0027176	Not Available	1135	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.86%
Host-Associated	Host-Associated	23.14%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	53.72%
Aquatic	Environmental → Aquatic	23.14%
Plants	Host-Associated → Plants	23.14%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	51.24%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.57%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.74%
Sediment	Environmental → Aquatic → Sediment	9.09%
Freshwater	Environmental → Aquatic → Freshwater	8.26%
Marine	Environmental → Aquatic → Marine	5.79%
Floodplain	Environmental → Terrestrial → Floodplain	1.65%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.83%
Roots	Host-Associated → Plants → Roots	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.09%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.26%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.61%
Loam	Environmental → Terrestrial → Soil → Loam	6.61%
Wetlands	Environmental → Aquatic → Marine → Wetlands	5.79%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.48%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.65%
Sand	Environmental → Terrestrial → Soil → Sand	1.65%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.65%
Lake	Environmental → Aquatic → Freshwater → Lake	0.83%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	0.83%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.49%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.26%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.61%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	5.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.96%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.13%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.31%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.48%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.48%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.65%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.65%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.65%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.83%
Unchlorinated	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated	0.83%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.83%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.26%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	5.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.79%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.96%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	4.13%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	4.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.31%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	2.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.48%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	2.48%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.65%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.65%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.65%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.65%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.83%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.83%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.83%
Wastewater	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.83%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.83%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.83%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003997	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1	Environmental	Open in IMG/M
3300004019	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2	Environmental	Open in IMG/M
3300004057	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004808	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh	Environmental	Open in IMG/M
3300005218	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005879	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_301	Environmental	Open in IMG/M
3300005885	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_401	Environmental	Open in IMG/M
3300005887	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_403	Environmental	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009777	Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water	Environmental	Open in IMG/M
3300009820	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011420	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT199_2	Environmental	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300012034	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT526_2	Environmental	Open in IMG/M
3300012133	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT121_2	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012493	Unplanted soil (control) microbial communities from North Carolina - M.Soil.10.yng.090610	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014254	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2	Environmental	Open in IMG/M
3300014255	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleC_D2	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300021063	Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos D4	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300025537	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025550	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D1 (SPAdes)	Environmental	Open in IMG/M
3300025558	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300027252	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027543	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh (SPAdes)	Environmental	Open in IMG/M
3300027831	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028043 (restricted)	Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0.5_MG	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
deepsgr_03442890	2199352025	Soil	VVGTTHVGLTFHFGGLSQEKVLKSMERCARLVLPELR
INPhiseqgaiiFebDRAFT_1018487501	3300000364	Soil	TTHIGLVFHFGGLSQEKVLKSMQRFARFVMPALRNT*
AP72_2010_repI_A01DRAFT_10705392	3300000579	Forest Soil	DVVGTTHIGLTFHFGGLSQDKVLKSMERFARSVMPQFR*
AF_2010_repII_A1DRAFT_101511221	3300000597	Forest Soil	LKRIIDVVGTTHIGLTFHFGGLSQDKVLKSMERFARSVMPQFR*
AF_2010_repII_A001DRAFT_100713653	3300000793	Forest Soil	VGTTHIGLVFHFGGLSQEKVLQSMERFARFVMPALR*
JGI10214J12806_101435391	3300000891	Soil	ILKRIIEVVGTTHVGLTFHFGGLSQDRVLQSMQRCAQLVLPALR*
JGI1027J12803_1030875741	3300000955	Soil	IIEVVGTTHIGLVFHFGGLSQEKVLKSMQRFARFVMPALRNT*
Ga0055466_101047941	3300003997	Natural And Restored Wetlands	TQRIIETIGPTHIGLVFHFGGLTQQQVLKSMERFARVVAPALR*
Ga0055439_101970612	3300004019	Natural And Restored Wetlands	CVKILKSIIDVVGTTHIGLVFHFGGLGQERVLKSMERFARFVMPVLKHSPA*
Ga0055496_100295642	3300004057	Natural And Restored Wetlands	IIDTVGTTHIGLTFHFGGLSQDKVLKSMERCAKSVLPALR*
Ga0063356_1006193052	3300004463	Arabidopsis Thaliana Rhizosphere	IEVVGTTHVGLTFHFGGLSQDKVLKSMERCSDSVLPALR*
Ga0063356_1020684712	3300004463	Arabidopsis Thaliana Rhizosphere	LKRISETVGTTHIGLTFHFGGLSQDKVLKSMQRCAKSVLPALR*
Ga0063356_1021752612	3300004463	Arabidopsis Thaliana Rhizosphere	IEVVGTTHIGLTFHFGGLSQDKVLGSMERSARSVLPALRQH*
Ga0062592_1013043012	3300004480	Soil	RIIEVVGTTHIGLTFHFGGLSQERVLKSMDRCAKLVLPGLR*
Ga0062381_102448501	3300004808	Wetland Sediment	SCVRILKRIIEIIGTNHIGLTFHFGGLSQDKALKSMERFAKLVMPALR*
Ga0068996_101040541	3300005218	Natural And Restored Wetlands	GVFGGPETCARILKRIIEVVGTTHIGLTFHFGGLGQDKVLKSMERCAKLVLPALR*
Ga0065712_100017177	3300005290	Miscanthus Rhizosphere	PETCVRILKRIIEIVGTSHVGLTFHFGGLSQNQVLQSMERCARAVLPAFR*
Ga0066388_1019386261	3300005332	Tropical Forest Soil	ETCARILKRIIDVVGATHIGLTFHFGGLSQNKVLKSMERFARSVMPQFR*
Ga0070668_1000641771	3300005347	Switchgrass Rhizosphere	IIEVVGTAHVGLTFHFGGLSQDRVLQSMQRCAQLVLPALR*
Ga0070708_1018461541	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	GPTHIGLVFHFGGLSQEKVLKSMERFARSVMPALRTANS*
Ga0070708_1022234651	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	GGPETCARIIKRIIEVVGTTHIGLTFHFGGLAQDKVLKSMERCAKVVLAGLR*
Ga0070662_1010296462	3300005457	Corn Rhizosphere	PETCVRILKRVIEVVGTTHVGLTFHFGGLSQAKVLKSMERCARLVLPALR*
Ga0068867_1005357011	3300005459	Miscanthus Rhizosphere	CVRILKQIIAVMGTTHIGLTFHFGGLSQDKILKSMQRCARNVLPGLR*
Ga0066905_1004795042	3300005713	Tropical Forest Soil	TCTRILKRIIEIVGTTHIGLTFHFGGLRQDKVLKSMERFARLVMPALK*
Ga0066905_1022935202	3300005713	Tropical Forest Soil	GTTHIGLTFHFGGLSQDKVLKSMERFARSVMPQFR*
Ga0068861_1008268791	3300005719	Switchgrass Rhizosphere	RILKQIIAVMGTTHIGLTFHFGGLSQDKILKSMQRCARNVLPGLR*
Ga0066903_1035912881	3300005764	Tropical Forest Soil	RIIEVVGTTHIGLVFHFGGLSQEKVLKSMERFARFVMPGLRNT*
Ga0066903_1043542971	3300005764	Tropical Forest Soil	ILKRIIDVVGATHIGLTFHFGGLSQDKVLKSMERFARSVMPHFR*
Ga0068870_110195002	3300005840	Miscanthus Rhizosphere	CARILKQIIAVMGTTHIGLTFHFGGLSQDKILKSMQRCARNVLPGLR*
Ga0075295_10278851	3300005879	Rice Paddy Soil	RIIEVVGTTHIGLTFHFGGLSQDKVLDSMERCARSVLPALRQH*
Ga0075284_10593142	3300005885	Rice Paddy Soil	VFGGPQTCARILKRIIEVVGTTHIGLTFHFGGLSQDKVLDSMERCARSVLPALRQH*
Ga0075292_10014261	3300005887	Rice Paddy Soil	VVGTTHIGLTFHFGGLSQDKVLDSMERCARSVLPALRQH*
Ga0081538_102990071	3300005981	Tabebuia Heterophylla Rhizosphere	GPDTCVAVLRKIISLVGATHIGLTFHFGGLSQDKVLQSMNRFASQVKPALVT*
Ga0079220_109257091	3300006806	Agricultural Soil	CVEILQSIREVLAPTHVGIVFHFGGLSQQKVLKSMERFARYVMPALQSN*
Ga0075428_1005568331	3300006844	Populus Rhizosphere	RILKRIIEVVGTTHIGLTFHFGGLSQDKVLKSMERFARLVMPALK*
Ga0075433_101081201	3300006852	Populus Rhizosphere	VFGGPETCVRILKRIIDVVGTTHIGFTFHFGGLSQEKVLKSMERCARFVLPALR*
Ga0075425_1005506931	3300006854	Populus Rhizosphere	THIGLVFHFGGLSQEKVLKSMERFARSVMPALRTANS*
Ga0079215_115155072	3300006894	Agricultural Soil	LGTTHIGLTFHFGGLNQQKVLKSMERFARQVRPALG*
Ga0115026_113478802	3300009111	Wetland	FGGPESCVRILKRIIETVGTTHIGLTFHFGGLSQDKVLKSMERCAKSVLPALR*
Ga0111538_101534323	3300009156	Populus Rhizosphere	ILKRIIEIVGTSHVGLTFHFGGLSQNQVLQSMERCARAVLPAFR*
Ga0111538_131936371	3300009156	Populus Rhizosphere	VFGGPEACVRILKRIIETVATNHVGLTFHFGGLSQERVLGSMERCARAVLPALR*
Ga0075423_100621881	3300009162	Populus Rhizosphere	RGIFGGPETCVRILKRVIEVVGTTHVGLTFHFGGLSQEKVLKSMERCARLVLPELR*
Ga0075423_113920162	3300009162	Populus Rhizosphere	RGVFGGPETCVRILKRIIDVVGTTHIGLTFHFGGLSQEKVLKSMERCARFVLPALR*
Ga0105347_14064221	3300009609	Soil	SCVRILKRIVETVGTTHIGLTFHFGGLSQDKVLKSMERCAKLVLAGLR*
Ga0105164_100345513	3300009777	Wastewater	IGLVFHFGGLGQDKILKSMERFARFVAPAFKEQQG*
Ga0105085_10601492	3300009820	Groundwater Sand	CTRILKRIIEVVGTTHIGLTFHFGGLSQDKVLKSMERFARWVMPALR*
Ga0126380_101039201	3300010043	Tropical Forest Soil	IIDVVGTTHIGLTFHFGGLRQDKVLKSMERFARLVMPALK*
Ga0126380_103730051	3300010043	Tropical Forest Soil	PETCVRQLKRAQDILQPSHVGLVFHFGGMKQDKVLKSMERFARLVAPALR*
Ga0126382_125432042	3300010047	Tropical Forest Soil	ETCAHILKRIIEVVGTTHIGLTFHFGGLSQDKVLKSMERCAKSVLPALR*
Ga0134088_100775142	3300010304	Grasslands Soil	CVRILKRIIDVGAWSHIGLTFHFGGLSQEKVLKSMERCARLVLPALR*
Ga0126377_114792211	3300010362	Tropical Forest Soil	LKRIIEVVGTTHIGLTFHFGGLSQDKVLKSMERCAKSVLPALR*
Ga0126383_120163791	3300010398	Tropical Forest Soil	ILKRIIEIVGTTHIGLTFHFGGLRQDKVLKSMERFARLVMPALK*
Ga0137314_11523202	3300011420	Soil	VGTTHIGLTFHFGGLGQDKVLKSMERCAKLVLAGLR*
Ga0137432_10244564	3300011439	Soil	VRQIIDVVGTTHIGLTFHFGGLGQDKVLKSMERFARLVMPALK*
Ga0137453_10178122	3300012034	Soil	RILQRIIDVVGTTHIGLTFHFVGLGQDKVLKSMERCAKLVVPALRSALKS*
Ga0137329_10418001	3300012133	Soil	ILRKIIDVVGVTHIGLTFHFGGLSQKKALKSMERFARQVRPAF*
Ga0137388_107759242	3300012189	Vadose Zone Soil	GLVFHFGGLSQEKVLKSMERFARFVMPALRTANS*
Ga0137376_101860674	3300012208	Vadose Zone Soil	LKRIIEVVGTTHIGLTFHFGGLSQDKVLKSMERFARLVMPALR*
Ga0137379_115372832	3300012209	Vadose Zone Soil	VGTTHIGLTFHFGGLSQEKVLKSMERCARFVLPALR*
Ga0137378_101624733	3300012210	Vadose Zone Soil	RMLKRIIEVVGTTHIGLTFHFGGLSQDKVLKSMERFARLVMPALK*
Ga0137372_105025901	3300012350	Vadose Zone Soil	ARILKRIIDVVGTTHIGLTFHFGGLSQERVLKSMERCARFVLPALR*
Ga0157355_10402231	3300012493	Unplanted Soil	ETCVRILKRVIEVVGTTHVGLTFHFGGLSQAKVLKSMERCARLVLPELR*
Ga0157301_100952481	3300012911	Soil	SCVRILKRIIEVVGTTHVGLTFHFGGLSQDRVLQSMQRCAQLVLPALR*
Ga0137407_101442121	3300012930	Vadose Zone Soil	TCARILKRIIEVVGTTHIGLTFHFGGLSQDKVLKSMERFARLVMPALK*
Ga0153915_110131911	3300012931	Freshwater Wetlands	RGVFGGPETCVRILKRIIEVVGPTHIGLVFHFGGLSQDKVLKSMERCARQAMPALR*
Ga0153915_133348491	3300012931	Freshwater Wetlands	IIDTIGPTHIGLVFHFGGLSQQKVLKSMERFARVIAPTPR*
Ga0126375_104236873	3300012948	Tropical Forest Soil	CVRILKRIIEVVGTTHIGLVFHFGGLSQEKVLKSVERFARFVMPALR*
Ga0163162_101535183	3300013306	Switchgrass Rhizosphere	LKRVIEVVGTTHVGLTFHFGGLSQAKVLKSMERCARLVLPVLR*
Ga0134075_102311952	3300014154	Grasslands Soil	IDVVGTTHIGLTFHFGGLSQEKVLKSMERCARLVLPALR*
Ga0075312_10003991	3300014254	Natural And Restored Wetlands	TCKHILRRIGEIVGTTHVGLTFHFGGLGQDKVLRSMERCVRYVLPALR*
Ga0075320_10391262	3300014255	Natural And Restored Wetlands	GPQTCARILKRIIEVLGTTHIGLTFHFGGLSQDKVLDSMERCARSVLPALRQH*
Ga0182008_103875031	3300014497	Rhizosphere	VVGTTHVGLTFHFGGLSQDRVLQSMQRCAQLVLPALR*
Ga0157379_106279092	3300014968	Switchgrass Rhizosphere	VFGGPESCVRILKRIIEVVGTTHVGLTFHFGGLSQDRVLQSMQRCAQLVLPALR*
Ga0132257_1003163932	3300015373	Arabidopsis Rhizosphere	VFGGPETCVRILKRIIEIVGTSHVGLTFHFGGLSQNQVLQSMERCARAVLPAFR*
Ga0132255_1014741621	3300015374	Arabidopsis Rhizosphere	CVRILKRVIEVVGTTHVGLTFHFGGLSQAKVLKSMERCSRLVLPELR*
Ga0187821_105165462	3300017936	Freshwater Sediment	RMLKRIIEVVGTTHVGLTFHFGGLGQEKILRSMERCARAVLPVLR
Ga0184604_100022111	3300018000	Groundwater Sediment	QIIDVVGTTHIGLTFHFGGLSQDKILKSLQRCARNVLPGLR
Ga0184608_100202553	3300018028	Groundwater Sediment	CVRILKRIIDVVGTTHIGLTFHFGGLSQEKILRSMERCARLVLPALR
Ga0184638_12186911	3300018052	Groundwater Sediment	GPETCARILQRIIDVVGTTHIGLTFHFGGLGQDKVLKSMERCARQVLPQVR
Ga0184623_103275481	3300018056	Groundwater Sediment	PETCARIFKRIIEVVGTTHIGLTFHFGGLGQDKVLKSMERCAKSVLVGLR
Ga0184635_100426131	3300018072	Groundwater Sediment	IEVVGTTHIGLTFHYGGLSQDKVLKSMERFARWVMPQFR
Ga0184625_102661701	3300018081	Groundwater Sediment	TCAQILRKIIDVIGVTHIGLTFHFGGLSQKKVLKSMERFARQVRPTF
Ga0187774_104912222	3300018089	Tropical Peatland	KRIIKVVGATHIGLTFHFGGLSQDKVLKSMERFARWVMPALK
Ga0190265_126338071	3300018422	Soil	VEVVGTTHIGLTFHFGGLSQEKVLKSMERFARQVRPALG
Ga0190273_119868501	3300018920	Soil	RILKRIVETVGTTHIGLTFHFGGLSQGKVLQSMERCAKSVLPALR
Ga0190264_118352352	3300019377	Soil	IVEVVGTTHIGLTFHFGGLSQDKVLSSMERCARSVLPALR
Ga0206227_11072821	3300021063	Deep Subsurface Sediment	TCARILQRIIDVVRTTHIGLTFHFGGLGQDKVLKSMERCAKLVVPALRSALKS
Ga0210379_105570371	3300021081	Groundwater Sediment	EACAKILKKIIETVGPTHIGLVFHFGGLSQDKVLKSMERCARQVMPALR
Ga0193719_101693581	3300021344	Soil	VGTTHVGLTFHFGGLSQAKVLKSMERCARLVLPELR
Ga0210061_10054193	3300025537	Natural And Restored Wetlands	QTCARILKRIIEVVGTTHIGLTFHFGGLSQDKVLDSMERCARSVLPALRQH
Ga0210098_10273682	3300025550	Natural And Restored Wetlands	GPESCVGILKRIVDVVGTTHIGLTFHFGGLGQHKALKSIERFAKLVMPALR
Ga0210139_10832311	3300025558	Natural And Restored Wetlands	CVKILKSIIDVVGTTHIGLVFHFGGLGQERVLKSMERFARFVMPVLKHSPA
Ga0207654_104863661	3300025911	Corn Rhizosphere	FGGPESCVSILKRIIEVVGTTHVGLTFHFGGLSQDRVLQSMQRCAQLVLPALR
Ga0207701_110566911	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	KRIIEIVGAIHVGLTFHFGGLPQNRVLQSMERCARVVLPAFR
Ga0207644_111362042	3300025931	Switchgrass Rhizosphere	RIIEVVGTTHVGLTFHFGGLSQDRVLQSMQRCAQLVLPALR
Ga0207675_1008895161	3300026118	Switchgrass Rhizosphere	ESCVRILKRIIEVVGTTHVGLTFHFGGLSQDRVLQSMQRCAQLVLPALR
Ga0209058_10959422	3300026536	Soil	RIIDVVGTTHIGLTFHFGGLSQEKVLKSMERCARLVLPALR
Ga0209973_10554122	3300027252	Arabidopsis Thaliana Rhizosphere	GVFGGPQTCARILKRIIEVVGTTHIGLTFHFGGLSQDKVLGSMERSARSVLPALRQH
Ga0209999_10402701	3300027543	Arabidopsis Thaliana Rhizosphere	EVVGTTHIGLTFHFGGLSQEKVLSSMERCARSVLPALR
Ga0209464_100650742	3300027778	Wetland Sediment	SCVRILKRIIEIIGTNHIGLTFHFGGLSQDKALKSMERFAKLVMPALR
Ga0209797_102287712	3300027831	Wetland Sediment	ETVGTDHIGLTFHFGGLSQDKVLKSMERFAESVMPALR
Ga0209465_101198583	3300027874	Tropical Forest Soil	RIIEIVGTTHIGLTFHFGGLRQDKVLKSMERFARSVMAQFR
(restricted) Ga0233417_106594312	3300028043	Sediment	VVGTTHIGLTFHFAGLSQDKVLKSMERCATLVLPSLR
Ga0307503_103338692	3300028802	Soil	VRILRRIIDTVGTTHIGLTFHFGGLSQDKVLKSMERCAKSVLPALG
Ga0299907_106625872	3300030006	Soil	VRILKRIIDVLRPTQIGLVFHFGGLGQDKVLRSMERFANSVAPVLR
Ga0302046_102245422	3300030620	Soil	GPESCARILKRIIEVVGTTHIGLTFHFGGLGQDRVLKSMERCARLVLPALR
Ga0299913_113923941	3300031229	Soil	EKIVEVVGTTHIGLTFHFGGLSQDKVLKSIERFARLVRPALGA
(restricted) Ga0255312_12028961	3300031248	Sandy Soil	CVRMLRSIIDTVGTTHIGLTFHFGGLSQDKVLKSMERCAKSVLPALR
Ga0307468_1007105322	3300031740	Hardwood Forest Soil	GTTHIGLVFHFGGLSQKKVLKSMERFARFVMPALRTANS
Ga0306918_104028731	3300031744	Soil	TCARILKDIIETVGTNHIGLTFHFGGLSQERVLRSMQRCARVVLPALR
Ga0307473_109167312	3300031820	Hardwood Forest Soil	GPETCVRILKRIIEVVGTTHIGLTFHFGGLAQDKVLKSMERFARVVMPPLK
Ga0310902_111928521	3300032012	Soil	IFGGPETCARILKRVIEVVGTTHVGLTFHFGGLSQEKVLKSMERCARLVLPELR
Ga0310899_102390222	3300032017	Soil	TTHIGLTFHFGGLSQDKVLKSMARCSDSVLPALRSQPSRTKT
Ga0310890_106418352	3300032075	Soil	RILKRVIEIVGASHVGLTFHFGGLPQNRVLQSMERCVRVVLPAFR
Ga0315912_101311562	3300032157	Soil	IIDTVGTTHIGLTFHFGGLSQDKVLKSMERCAKFVLPGLR
Ga0310810_100536421	3300033412	Soil	RGVFGGPETCVRILKRIIEIVGTSHVGLTFHFGGLSQNQVLQSMERCARAVLPAFR
Ga0316619_118958222	3300033414	Soil	KRISETVGTTHIGLTFHFGGLSQDKVLKSMERCAKSVLPALR
Ga0316624_117016032	3300033486	Soil	IEVVGTTHVGLTFHFGGLGQEKILRSMERCARAVLPALR
Ga0364925_0104650_13_177	3300034147	Sediment	VFGGPASCVRILKRIVETVGTTHIGLTFHFGGLSQDKVLKSMERCAESVLPALR
Ga0364934_0344807_3_131	3300034178	Sediment	LRKIIDLVGATHIGLTFHFGGLSQKNVLKSMERFARQVRPAF
Ga0373959_0027176_2_136	3300034820	Rhizosphere Soil	ILKRIIEVVGTTHIGLTFHFGGLGQDKVLKSMERFARSVMPALK

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters