Metagenome Family F072069

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072069
Family Type	Metagenome
Number of Sequences	121
Average Sequence Length	61 residues
Representative Sequence	MLPSEVRRRAQEVREAAQHLVKESQQLRDRSDVLIREAEAALFEKQRALREAMSKRTAS
Number of Associated Samples	68
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.86 %
% of genes near scaffold ends (potentially truncated)	69.42 %
% of genes from short scaffolds (< 2000 bps)	88.43 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (71.901 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (32.231 % of family members)
Environment Ontology (ENVO)	Unclassified (59.504 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.678 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Mixed	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 63.22% β-sheet: 0.00% Coil/Unstructured: 36.78%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF04392	ABC_sub_bind	8.26
PF00072	Response_reg	3.31
PF00753	Lactamase_B	3.31
PF13683	rve_3	1.65
PF13420	Acetyltransf_4	0.83
PF00561	Abhydrolase_1	0.83
PF00313	CSD	0.83
PF01594	AI-2E_transport	0.83
PF04238	DUF420	0.83
PF01551	Peptidase_M23	0.83
PF00570	HRDC	0.83
PF03631	Virul_fac_BrkB	0.83
PF02518	HATPase_c	0.83
PF12697	Abhydrolase_6	0.83
PF10759	BPA	0.83
PF00884	Sulfatase	0.83
PF01068	DNA_ligase_A_M	0.83
PF01370	Epimerase	0.83
PF00589	Phage_integrase	0.83
PF12706	Lactamase_B_2	0.83
PF01936	NYN	0.83
PF05163	DinB	0.83
PF11154	DUF2934	0.83
PF01593	Amino_oxidase	0.83
PF01243	Putative_PNPOx	0.83
PF07681	DoxX	0.83
PF03705	CheR_N	0.83
PF01569	PAP2	0.83
PF09382	RQC	0.83
PF02567	PhzC-PhzF	0.83
PF04199	Cyclase	0.83
PF00196	GerE	0.83
PF00989	PAS	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	8.26
COG1352	Methylase of chemotaxis methyl-accepting proteins	Signal transduction mechanisms [T]	1.65
COG0384	Predicted epimerase YddE/YHI9, PhzF superfamily	General function prediction only [R]	0.83
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.83
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.83
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.83
COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	General function prediction only [R]	0.83
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.83
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	0.83
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.83
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.83
COG2322	Cytochrome oxidase assembly protein CtaM/YozB, DUF420 family	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.90 %
Unclassified	root	N/A	28.10 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.90 %
Unclassified	root	N/A	28.10 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.90 %
Unclassified	root	N/A	28.10 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	38.02 %
Unclassified	root	N/A	28.10 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.48 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.65 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	38.02 %
Unclassified	root	N/A	28.10 %
unclassified Terrabacteria group	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group	1.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.65 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	38.02 %
Unclassified	root	N/A	28.10 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	1.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.65 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	37.19 %
Unclassified	root	N/A	28.10 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	1.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.65 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	37.19 %
Unclassified	root	N/A	28.10 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	1.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.65 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17360345	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
2088090014\|GPIPI_17457806	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1695	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10171207	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	516	Open in IMG/M
3300000955\|JGI1027J12803_100442719	Not Available	503	Open in IMG/M
3300004268\|Ga0066398_10022201	All Organisms → cellular organisms → Bacteria	1078	Open in IMG/M
3300004633\|Ga0066395_10287880	Not Available	894	Open in IMG/M
3300004633\|Ga0066395_10548672	Not Available	672	Open in IMG/M
3300005295\|Ga0065707_10546908	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	698	Open in IMG/M
3300005332\|Ga0066388_100058697	All Organisms → cellular organisms → Bacteria → Proteobacteria	4049	Open in IMG/M
3300005332\|Ga0066388_102119494	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1012	Open in IMG/M
3300005332\|Ga0066388_102268686	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	981	Open in IMG/M
3300005332\|Ga0066388_105568695	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	638	Open in IMG/M
3300005332\|Ga0066388_105908496	Not Available	619	Open in IMG/M
3300005332\|Ga0066388_108725748	Not Available	503	Open in IMG/M
3300005347\|Ga0070668_100763359	Not Available	857	Open in IMG/M
3300005458\|Ga0070681_11396145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	624	Open in IMG/M
3300005459\|Ga0068867_101761059	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300005713\|Ga0066905_100206547	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1473	Open in IMG/M
3300005713\|Ga0066905_101187264	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300005713\|Ga0066905_101422122	Not Available	628	Open in IMG/M
3300005713\|Ga0066905_101812965	Not Available	563	Open in IMG/M
3300005764\|Ga0066903_100875419	All Organisms → cellular organisms → Bacteria	1621	Open in IMG/M
3300005764\|Ga0066903_102528546	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	994	Open in IMG/M
3300005764\|Ga0066903_103772955	Not Available	814	Open in IMG/M
3300006049\|Ga0075417_10103287	Not Available	1295	Open in IMG/M
3300006058\|Ga0075432_10093363	Not Available	1104	Open in IMG/M
3300006844\|Ga0075428_102420863	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300006852\|Ga0075433_10323815	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1363	Open in IMG/M
3300006854\|Ga0075425_101723665	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300006871\|Ga0075434_101897819	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	602	Open in IMG/M
3300006914\|Ga0075436_100244726	All Organisms → cellular organisms → Bacteria	1276	Open in IMG/M
3300007076\|Ga0075435_100306091	All Organisms → cellular organisms → Bacteria	1359	Open in IMG/M
3300007076\|Ga0075435_101873267	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	526	Open in IMG/M
3300009012\|Ga0066710_104369573	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	528	Open in IMG/M
3300009100\|Ga0075418_10802777	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300009100\|Ga0075418_12163055	Not Available	607	Open in IMG/M
3300009100\|Ga0075418_13037150	Not Available	511	Open in IMG/M
3300009147\|Ga0114129_10991098	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1059	Open in IMG/M
3300009147\|Ga0114129_13262643	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	526	Open in IMG/M
3300009156\|Ga0111538_10197326	All Organisms → cellular organisms → Bacteria	2554	Open in IMG/M
3300009162\|Ga0075423_10841584	Not Available	971	Open in IMG/M
3300009162\|Ga0075423_11203613	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	808	Open in IMG/M
3300009162\|Ga0075423_11535760	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300009792\|Ga0126374_10345084	Not Available	1018	Open in IMG/M
3300009792\|Ga0126374_10954932	Not Available	669	Open in IMG/M
3300010043\|Ga0126380_10376746	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1044	Open in IMG/M
3300010043\|Ga0126380_10657937	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	835	Open in IMG/M
3300010043\|Ga0126380_11147387	Not Available	666	Open in IMG/M
3300010043\|Ga0126380_11189661	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	656	Open in IMG/M
3300010043\|Ga0126380_11734306	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	562	Open in IMG/M
3300010043\|Ga0126380_11738755	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300010043\|Ga0126380_11805026	Not Available	553	Open in IMG/M
3300010047\|Ga0126382_10137539	All Organisms → cellular organisms → Bacteria	1651	Open in IMG/M
3300010047\|Ga0126382_10431265	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1038	Open in IMG/M
3300010047\|Ga0126382_11142973	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	693	Open in IMG/M
3300010047\|Ga0126382_11575333	Not Available	608	Open in IMG/M
3300010359\|Ga0126376_10106387	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2152	Open in IMG/M
3300010359\|Ga0126376_10772203	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	934	Open in IMG/M
3300010359\|Ga0126376_11739731	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	660	Open in IMG/M
3300010359\|Ga0126376_11891043	Not Available	636	Open in IMG/M
3300010360\|Ga0126372_11253616	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	768	Open in IMG/M
3300010361\|Ga0126378_11958303	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	667	Open in IMG/M
3300010362\|Ga0126377_10444785	All Organisms → cellular organisms → Bacteria	1317	Open in IMG/M
3300010362\|Ga0126377_10472512	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1280	Open in IMG/M
3300010362\|Ga0126377_10981396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	910	Open in IMG/M
3300010362\|Ga0126377_11045142	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	884	Open in IMG/M
3300010362\|Ga0126377_11045966	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300010362\|Ga0126377_12492131	Not Available	593	Open in IMG/M
3300010366\|Ga0126379_11136187	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	887	Open in IMG/M
3300010366\|Ga0126379_11284779	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300010366\|Ga0126379_12762754	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	587	Open in IMG/M
3300010398\|Ga0126383_10083278	All Organisms → cellular organisms → Bacteria	2800	Open in IMG/M
3300010398\|Ga0126383_11889519	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	685	Open in IMG/M
3300010398\|Ga0126383_12000870	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	667	Open in IMG/M
3300010398\|Ga0126383_12261943	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300010399\|Ga0134127_10554595	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1170	Open in IMG/M
3300010868\|Ga0124844_1116696	Not Available	1018	Open in IMG/M
3300012948\|Ga0126375_10115316	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1625	Open in IMG/M
3300012948\|Ga0126375_11279712	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300012948\|Ga0126375_11644730	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	555	Open in IMG/M
3300012948\|Ga0126375_12055452	Not Available	506	Open in IMG/M
3300012971\|Ga0126369_10936771	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	952	Open in IMG/M
3300015371\|Ga0132258_10504671	All Organisms → cellular organisms → Bacteria	3026	Open in IMG/M
3300016270\|Ga0182036_11314548	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	603	Open in IMG/M
3300017944\|Ga0187786_10197839	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	762	Open in IMG/M
3300025923\|Ga0207681_10294566	All Organisms → cellular organisms → Bacteria	1282	Open in IMG/M
3300025930\|Ga0207701_10892920	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300025930\|Ga0207701_11611466	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300027527\|Ga0209684_1026798	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300027646\|Ga0209466_1097193	Not Available	596	Open in IMG/M
3300027654\|Ga0209799_1046022	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300027874\|Ga0209465_10194733	Not Available	1011	Open in IMG/M
3300027880\|Ga0209481_10102318	All Organisms → cellular organisms → Bacteria	1385	Open in IMG/M
3300027907\|Ga0207428_10146216	Not Available	1801	Open in IMG/M
3300031720\|Ga0307469_10047651	All Organisms → cellular organisms → Bacteria → Proteobacteria	2665	Open in IMG/M
3300031720\|Ga0307469_10629806	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	963	Open in IMG/M
3300031720\|Ga0307469_11335835	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	682	Open in IMG/M
3300031720\|Ga0307469_11439896	Not Available	658	Open in IMG/M
3300031720\|Ga0307469_11534962	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300031724\|Ga0318500_10530312	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	593	Open in IMG/M
3300031736\|Ga0318501_10583778	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	613	Open in IMG/M
3300031740\|Ga0307468_100096491	All Organisms → cellular organisms → Bacteria	1742	Open in IMG/M
3300031740\|Ga0307468_100288386	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1183	Open in IMG/M
3300031763\|Ga0318537_10176003	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	797	Open in IMG/M
3300031797\|Ga0318550_10594250	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	532	Open in IMG/M
3300031820\|Ga0307473_10146005	All Organisms → cellular organisms → Bacteria	1338	Open in IMG/M
3300031820\|Ga0307473_10461983	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	848	Open in IMG/M
3300031890\|Ga0306925_10251283	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1905	Open in IMG/M
3300031890\|Ga0306925_11654212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	620	Open in IMG/M
3300031946\|Ga0310910_10354475	All Organisms → cellular organisms → Bacteria	1159	Open in IMG/M
3300032009\|Ga0318563_10488933	Not Available	665	Open in IMG/M
3300032043\|Ga0318556_10199142	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300032076\|Ga0306924_10071263	Not Available	3879	Open in IMG/M
3300032091\|Ga0318577_10016035	All Organisms → cellular organisms → Bacteria	3041	Open in IMG/M
3300032180\|Ga0307471_100021800	All Organisms → cellular organisms → Bacteria	4717	Open in IMG/M
3300032205\|Ga0307472_101763963	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.17%
Host-Associated	Host-Associated	19.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.17%
Plants	Host-Associated → Plants	19.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.18%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.16%
Loam	Environmental → Terrestrial → Soil → Loam	18.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.53%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.65%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.71%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.49%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.53%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	32.23%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	17.36%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	16.53%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	9.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_00454500	2088090014	Soil	VRRRAKEVREAAQHLVKESQQLRDRSDVLIREAETRLFERQRALRDAMSRRIAS
GPIPI_01058290	2088090014	Soil	MLPVEIKNKVQALREAAQRLVKESQQLRDRSDVLIAEAEVALFERQRALREAMSRRVAS
AF_2010_repII_A1DRAFT_101712071	3300000597	Forest Soil	MLPSEVRLRAQAVREEVAQRLVKQSQQARDRSDVLMREAEAALFERRRALR
JGI1027J12803_1004427191	3300000955	Soil	AMLPSEIRLRAQAMREAAQRLVKQRQDLSDNSDVLIRQAEAALFESQQALRAAMSKRALS
Ga0066398_100222012	3300004268	Tropical Forest Soil	ICAMLPAEVRLKAQAVREAAQHLVKESQQLRDTSDVLIREAEAVLFERQRALREVMARRIAP*
Ga0066395_102878802	3300004633	Tropical Forest Soil	TTSVRAHLYSCAVLSSEIRLRAREVREAAQHLVKESQQLRDKSTVLIQEAEAALFERQRALREAMSRRVAS*
Ga0066395_105486722	3300004633	Tropical Forest Soil	RRQAQAVRAAAHRLVKQAQQARDRSDVLMREAEALLFERQQALRGAMEKRAAS*
Ga0065707_105469081	3300005295	Switchgrass Rhizosphere	LPSEIRLRVQAVREAAQRLVKETQQLSDRSDVLIREAELALFEKQRALREAMSKRTAS*
Ga0066388_1000586975	3300005332	Tropical Forest Soil	CAMLPSEVRLRAQAVREAAQRLVKRSQQARDRADVLMREAEAALFERQAALREAMSRRTG
Ga0066388_1021194941	3300005332	Tropical Forest Soil	THLYGCAMLPVEIRRRAREVREAAQRLVKQSQQLREKADVLIREAEAVLFAQQRALREAMSRRGAS*
Ga0066388_1022686864	3300005332	Tropical Forest Soil	MLPSEVRLRAHAVREAAQRLVKESRQARDRSDVLIREAEATLFECQRALREAMSKRTSS*
Ga0066388_1055686951	3300005332	Tropical Forest Soil	HLFRCAMLPSEVRTRAQAVREAAQRLVKESQQITDRSDLLIREAEAALFERQRALREAMSKSTAPPRDYSLSRP*
Ga0066388_1059084961	3300005332	Tropical Forest Soil	LYSCAMLPAEIRRRAQEVREAAQHLVKESQQLRDTSDVLIREAEALLFERLRSLREVMARRIAS*
Ga0066388_1087257481	3300005332	Tropical Forest Soil	TQSARGHVYICAMLPAEVRLKAQAVREAAQNLVKESQQLRDRSDVLIREAEAALFERQRALREVMARRTAS*
Ga0070668_1007633591	3300005347	Switchgrass Rhizosphere	PSEIRLRVQAVREAAQRLVKEIQQLSDRSDVLIREAESALLEKQRALREAMSKRTVT*
Ga0070681_113961452	3300005458	Corn Rhizosphere	HLFRCAMLPSEIRLRAQAVREAAQSLLRRSEQFRDNSDALIVEAEAALFKMQRALREAMSKRTVT*
Ga0068867_1017610592	3300005459	Miscanthus Rhizosphere	LTEAVRAHLFRCAMLPSEIRLRAQAVREAAQRLVKEIQQLSDRSDVLIREAESALFEKQRALREAMSKRTVT*
Ga0066905_1002065471	3300005713	Tropical Forest Soil	MLPSEIKLRAQAVREAAQRLVKRSQQARDRSDVLIREAEAALFEKQRILREAMSRKAAS*
Ga0066905_1011872641	3300005713	Tropical Forest Soil	AEVRRRAVSLRAAAQYLVKQSQQARGISDVLVREAEAILFERQRALREAMSRRAAS*
Ga0066905_1014221221	3300005713	Tropical Forest Soil	AMLPSEVRLRAQAVREAAQRLVKQSQQARDRADVLMREAEAALFESQRALREAMSRRTAF
Ga0066905_1018129652	3300005713	Tropical Forest Soil	MLLAEVRRRAVSLRAGAQYLVKQSQQARDKSDVLIRGAEAALFERQRALREAMSRRTTSQPASD*
Ga0066903_1008754192	3300005764	Tropical Forest Soil	LPLEVRRQAQAVRAAAHRLVKQAQQARDRSDVLMREAEALLFERQQALRGAMEKRAAS*
Ga0066903_1025285461	3300005764	Tropical Forest Soil	DLTPSVRAHLYGCAILPAEVRQRAREVRAAAQHLVKQAQQLRDKSDVLIREAEAALLERQRALRDAMSRRTIS*
Ga0066903_1037729551	3300005764	Tropical Forest Soil	HLYGCAMLPSEVRLRAQAIREAAQHLVKESQQLRDRSDVLIREAEAALFEKQRALRKAMSKRMAS*
Ga0075417_101032872	3300006049	Populus Rhizosphere	VRRRAKEVREAAQHLVKESQQLRDRSDVLIREAETRLFERQRALRDAMSRRIAS*
Ga0075432_100933631	3300006058	Populus Rhizosphere	VRRRAKEVREAAQHLVKESQQLRDRSDVLIREAETRLFERQRALRDAMSRRIAP*
Ga0075428_1024208632	3300006844	Populus Rhizosphere	EIRLRVQAVREAAQRLVKETQQLRDRSDVLIREAEATLFERQRALREAMSKRAAS*
Ga0075433_103238153	3300006852	Populus Rhizosphere	MLYGCAMLPSEVRLKAQAVREAAQRLVKKSQQARDKSDVPMREAEAVLFKSQRALREAMSRRAAS*
Ga0075425_1017236651	3300006854	Populus Rhizosphere	FRCAMLPSEIRLRAQAVREAAQRLVKETQQLGDRSDVLIREAEIALFEKQRALREAMSKRTAT*
Ga0075434_1018978191	3300006871	Populus Rhizosphere	EIRLRAQAVREAAQRLVKETQQLGELSDVQFREAENALFEKQRALREAMSKRTAS*
Ga0075436_1002447262	3300006914	Populus Rhizosphere	AQAVREAAQRLVKETQQLGDKSDALIREAEIALFEKQRALREAMSKRTAT*
Ga0075435_1003060911	3300007076	Populus Rhizosphere	KAQAVRASAQHLIKESQQLADNSDVLIREAEAALFAHQQILRDAMRRRTS*
Ga0075435_1018732671	3300007076	Populus Rhizosphere	AMLPSEVRRRTQVVREAAQRLVKATQQVSDRSDVLIREAEIALFEKQRALREAMSRRAAS
Ga0066710_1043695731	3300009012	Grasslands Soil	RAHVYSCAMLPSEVRLKVQAVREAAQRLVKQSQQPRDRSNALIREAEAALFERLRALRDTMATRAAS
Ga0075418_108027771	3300009100	Populus Rhizosphere	CAMLPSEIRLRAQAVREAAQRLVKETQQVLIREAEAALFESQRALRDAMSKRTTT*
Ga0075418_121630552	3300009100	Populus Rhizosphere	MLPSEIRLRAQAVREAAQRLVKEIQQLSDRSDVLIREAESALLEKQRALREAMSKRTVT*
Ga0075418_130371501	3300009100	Populus Rhizosphere	MLPSEIRLRAQAVREAAQRLVKEIQQLSDRSDVLIREAESALFEKERALREAMSKRTVT*
Ga0114129_109910982	3300009147	Populus Rhizosphere	MLPSEIRLRAQAVREAAQRLVKETQQVLIREAEAALFEKQRALREAMSKRRAG*
Ga0114129_132626431	3300009147	Populus Rhizosphere	MLPSEVRLRTRAVREAAQRLVKQSQELRDNADVLIREAEAALFESQQALRAAMRKRP*
Ga0111538_101973261	3300009156	Populus Rhizosphere	AHLFRCAMLPSEIRLRAQAVREAAQRLVKEIQQLSDRSDVLIREAESALLEKQRALREAMSKRTVT*
Ga0075423_108415841	3300009162	Populus Rhizosphere	TEAVRAHLFRCAMLPSEIRLRAQAVREAAQRLVKEIQQLSDRSDVLIREAESALLEKQRALREAMSKRTVT*
Ga0075423_112036131	3300009162	Populus Rhizosphere	SEIRLRAQAVREAAQRLVKETQQLGDRSDVLIREAEIALFEKQRALREAMSKRTAT*
Ga0075423_115357602	3300009162	Populus Rhizosphere	MLPSEIRLRVQAVREAAQRLVKETQQLSDRSDVLIREAEAALFESQRALRDAMSKRTTT*
Ga0126374_103450842	3300009792	Tropical Forest Soil	VLSSEIRLRAREVREAAQHLVKESQQLRDKSTVLIQEAEAALFERQRALREAMSRRVAS*
Ga0126374_109549321	3300009792	Tropical Forest Soil	QSARGHVYSCAMLPAEVRLKAQAVREAAQQLVKESQQLRDRSDVLIREAEAALFERQRALREVMARRTAS*
Ga0126380_103767462	3300010043	Tropical Forest Soil	MLPSEIRLRAHAVREAAQRLVKESRQARDRSDVLIREAEATLFECQRALREAMSKRTSS*
Ga0126380_106579372	3300010043	Tropical Forest Soil	MAPAEVRLRARRVREAAQYVTKLSQQTRDRSDVLIREAEAALFEAQKTLRAALVLRMTY*
Ga0126380_111473871	3300010043	Tropical Forest Soil	VLSSEIRLRAREVREAAQHLVKESQQLRDKSTVLIQEAEAALFERQRALREAMS
Ga0126380_111896612	3300010043	Tropical Forest Soil	MLPSEVRLRAHAVREAAQRLVKESRQARDRSDVLIREAEATLFECQRALREAMSRRTAS*
Ga0126380_117343062	3300010043	Tropical Forest Soil	YGCAMLPSEIRLQAQAVREAAQRLVKESQQLRDTSDALIREAEAALFESQRDLREAMSKRTTS*
Ga0126380_117387551	3300010043	Tropical Forest Soil	YGCAMLPSEIRLQAQAVREAAQRLVKETQQLRDRSDVLIREAEAALFERQRALREVMSRRTDQSLRNRPS*
Ga0126380_118050262	3300010043	Tropical Forest Soil	RAHLFGCAMAPSEVRIRAQEVREAAQRLVKQSQQARDRSDVLIPEAEAVLFERQRALRDAMSRRTTS*
Ga0126382_101375393	3300010047	Tropical Forest Soil	MLPSEVRRRAQEVREAAQHLVKESQQLRDRSDVLIREAEAALFEKQRALREAMSKRTAS*
Ga0126382_104312651	3300010047	Tropical Forest Soil	SVRAHLFSCAMLPSEVRLRAQAVREAAQRLVKQSQQARDRADVLMREAEAALFETQRALREAMSRRTST*
Ga0126382_111429732	3300010047	Tropical Forest Soil	MLPAEIRRRAQEVREAAQHLVKESQQLRDTSDVLIREAEALLFERLRSLRDAMSRRITS*
Ga0126382_115753331	3300010047	Tropical Forest Soil	SEVRLRAHAVREAAQRLVKQSQQARDRADVLIREAEAALFDSQRALREAMSKRTAS*
Ga0126376_101063875	3300010359	Tropical Forest Soil	SEVRLRAREVREAAQRLVKQSQQARDRSDLLIREAEAALFERQRALREVMARRTAS*
Ga0126376_107214891	3300010359	Tropical Forest Soil	AVREAAHQLVKQSQQARDRSDVLIREAEALLFERQRALREAMSRRATS*
Ga0126376_107722031	3300010359	Tropical Forest Soil	LKAQAVREAAQHLVKESQQLRDTSDVLIREAEAVLFERQRALREVMARRIAP*
Ga0126376_117397311	3300010359	Tropical Forest Soil	LTESARGHLYGCGLLPAEVRQRAREVREAAQHLVKQSQQLRDKADILIRTAEAALFARQRDLREAMARRAAS*
Ga0126376_118910432	3300010359	Tropical Forest Soil	VRLRAQAVREMAQRLVKQSQQARDRADVLIREAEAALFDSQRALREAMSKRTAS*
Ga0126372_112536162	3300010360	Tropical Forest Soil	MLPAEVRRRAQEVREAARHLVKESQQLRDRSDVLIREAEAALFETQRALR
Ga0126378_119583031	3300010361	Tropical Forest Soil	MLPAEVRLKAQAVREAAQNLVKESQQLRDISDVLIREAEAALFERQRTLREVMARRIAS*
Ga0126377_104447853	3300010362	Tropical Forest Soil	MLPAEIRRRAQEVREAAQHLVKESQQLRDTSDVLIREAEALRFERLRSLRDAMSRRITA*
Ga0126377_104725123	3300010362	Tropical Forest Soil	MLPSEVRLRAHAVREAAQRLVKESRQARDRSDVLIREAEAALFECQRALREAMSKRTSS*
Ga0126377_109813964	3300010362	Tropical Forest Soil	TATARAHLFSCAIAPAEIRLRAQAVREAAQRLVKQSQQARDRSDVLIREAEAALFERQRALREAMSRRAAS*
Ga0126377_110451421	3300010362	Tropical Forest Soil	TQSARGHVYICAMLPAEVRLKAQAVREAAQNLVKESQQLRDRSDVLIREAEAALFERQRALREVMARRIAS*
Ga0126377_110459661	3300010362	Tropical Forest Soil	LPAEVQRRARAVRAAAQHLVKESQQLRDTADVLIREAEAALFESHRALRETMSKRTTS*
Ga0126377_124921312	3300010362	Tropical Forest Soil	PAEIRRRAQEVREAAQHLVKESQQLRDASDVLIREAEALLFERLRSLREAMSQRTAS*
Ga0126379_111361872	3300010366	Tropical Forest Soil	MLPAEVRRRAEEVRAAAQRLVKETQQLRDSSDVLIREAEAALFESQRALREAMSKRTTS*
Ga0126379_112847791	3300010366	Tropical Forest Soil	LRARAVREAAQNLVKQSQQLRDRADFLIVEAEAALLERQRALRDAMSRRAVS*
Ga0126379_127627542	3300010366	Tropical Forest Soil	DVRAHLFSCAMLPSEVRRRAQAVREAAQHLVKQSQELRDKSDVAIREAEAALFQRQRALREVMAQRKAP*
Ga0126381_1010329521	3300010376	Tropical Forest Soil	AEVRPGAQAVREAAQRLVKQSQQARDRSDVLIQEAEALLFERQQALRAMAKRTTS*
Ga0126383_100832784	3300010398	Tropical Forest Soil	LTTSVRAHLYSCAVLSSEIRLRAREVREAAQHLVKESQQLRDKSTVLIQEAEAALFERQRALREAMSRRAAS*
Ga0126383_118895191	3300010398	Tropical Forest Soil	AQAVREAAQRLVKEAQQARDRADVLIREAEVLLFEQQRALRAAVARRTIS*
Ga0126383_120008702	3300010398	Tropical Forest Soil	AQAVREAAQHLVKESQQLRDTSEVLIREAEAALFERQRALREVMARRTAS*
Ga0126383_122619431	3300010398	Tropical Forest Soil	MLPSETRLRAKAVREAAQHLVKESQQLRDTSDVLIREAEAALFESQCALRAAISRRTAS*
Ga0134127_105545951	3300010399	Terrestrial Soil	RGQAVREAAQRRVKEIQQLGELSDLQIREAENALFEKQRALREAMSKRTAT*
Ga0124844_11166961	3300010868	Tropical Forest Soil	SEVRRRAQAVREAAQPVKETQELRDRSNVLIREAEAALFESQRALREAMSKRKVS*
Ga0137410_100808131	3300012944	Vadose Zone Soil	MLPEEIRRRAQAVREAAQYLTKESRELRDTSDVLIREAEAALHALREAMRRSPPNQGNA*
Ga0126375_101153162	3300012948	Tropical Forest Soil	MLPSEVRLRAHAVRKAAQRIVKESRQARDRSDVLIREAEATLFECQRALREAMSKRTSS*
Ga0126375_112797121	3300012948	Tropical Forest Soil	AVREAAQRLVKRSQQARDRSDVLIREAEAALFEKQRILREAMSRKAAS*
Ga0126375_116447301	3300012948	Tropical Forest Soil	MLPSEVRLRAQAVREAAQRLVKQSQQARDRADVLMREVEAALFESQRALREAMSKRATS
Ga0126375_120554521	3300012948	Tropical Forest Soil	ARAHVFSCAMLPSEVRLRAREVREAAQRLVKQSQQARDRSDVLIREAEAALFERQRALREVMAQRTAS*
Ga0126369_109367712	3300012971	Tropical Forest Soil	MLPDDIRIRAQEVREAAQRLVKESHQLRDKADVLIREAETHLVERQRALRTAMAKTAAP*
Ga0132258_105046716	3300015371	Arabidopsis Rhizosphere	MLPAEIRLRAQAVREAAQRLVKASQQLADRSNGLIREAEAPLFETQRALREAMSKRTAT*
Ga0182036_113145481	3300016270	Soil	HLFRCMMLPAEVRLRAQAVREAAQRLVKQSRQARDRADVLIREAEARLFEQQRALRTALARRKTN
Ga0187786_101978392	3300017944	Tropical Peatland	CAIAPSEVRLGAQAVRAAAQHLMKQSQQAHDRSDVLIQEAEAALFERQRALREAMSRRAA
Ga0207681_102945661	3300025923	Switchgrass Rhizosphere	LFRCAMLPSEIRLRAQAVREAAQRLVKEIQQLSDRSDVLIREAESALLEKQRALREAMSKRTVT
Ga0207701_108929201	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	GCAMLPSEVRHRARAVREAAQCLVKQTQELRDNADVLILEAEAALFESQQALRAAMSKRP
Ga0207701_116114661	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	RCAMLPSEIRLRAQAVREAAQRLVKEIQQLSDRSDVLIREAESALLEKQRALREAMSKRTVT
Ga0209684_10267981	3300027527	Tropical Forest Soil	MFTASARAHVLGCALLPSEVRRRAQEVREAAQRLVKQSQQARDRSDLLIREAEAALFERQRDLREAMSRRTAS
Ga0209466_10971931	3300027646	Tropical Forest Soil	HLYSCAMLPAEIRRRAQEVREAAQHLVKESQQLRDASDVLIREAEALLFERLRSLREAMSQRTAS
Ga0209799_10460221	3300027654	Tropical Forest Soil	MLPAEIRRRAQEVREAAQHLVKESQQLRDKSTVLIQEAEAALFERQRALREAMSRRAAS
Ga0209465_101947331	3300027874	Tropical Forest Soil	SCTMLPSEVRRRAQAVREAAQHLVKQSQELRDKSDVAIREAEAALFQRQRALREVMAQRKAP
Ga0209481_101023182	3300027880	Populus Rhizosphere	MLPSEIRLRAQAVREAAQRLVKETQQLSDRSDVLIREAESALLEKQRALREAMSKRTVT
Ga0207428_101462163	3300027907	Populus Rhizosphere	VRRRAKEVREAAQHLVKESQQLRDRSDVLIREAETRLFERQRALRDAMSRRIAP
Ga0318496_106094432	3300031713	Soil	KEVREAARQLVKRSQQAIDRSDVLIREAEALLFVRQQVLRAAMGRRAAS
Ga0307469_100476513	3300031720	Hardwood Forest Soil	VQAVREAAQRLVKEIQQLGELSDLQIREAENALFEKQRALREAMSKRTVT
Ga0307469_106298062	3300031720	Hardwood Forest Soil	MLPSEVRRRAQAVREAAQHLVKESQQLRDRSDVLIREAEATLFEKQRTLREAMSKRTTSE
Ga0307469_113358351	3300031720	Hardwood Forest Soil	PEEVRLRAQAVRDAARHLVKESQQLRDKSDVLIREAEAALFEKQRALREAMSRKKEGFP
Ga0307469_114398961	3300031720	Hardwood Forest Soil	MLPAEIRRRAQEVREAAQHLVKESQQLRDTSDVLIRDAEAALFERRRSLREAMSQRTAS
Ga0307469_115349621	3300031720	Hardwood Forest Soil	ALTENVRTHLYGCAKLPSEVRLRAHAVREAAQPLVRQSQQLCDRSDRLLREAEAALFERQRALREAMSRRTAS
Ga0318500_105303121	3300031724	Soil	LPAEVRLKAQAAREAAQHLVKESQQLRDTSDVLIREAEAALFERQRDLREAMSQRTAS
Ga0318501_105837781	3300031736	Soil	AMLPAEVRLKAKAAREAAQHLVKESQQLRDTSDVLIREAEAALFERQRDLREAMSQRTAS
Ga0307468_1000964911	3300031740	Hardwood Forest Soil	HLYGCAKLPSEVRLRAHAVREAAQPLVRQSQQLCDRSDRLLREAEAALFERQRALREAMSRRTAS
Ga0307468_1002883864	3300031740	Hardwood Forest Soil	MLCGCAMLPSEVRLKAQAVREAAQRLVKKSQQARDKSDVPMREAEAVLFKSQRALREAMSRRAAS
Ga0318537_101760032	3300031763	Soil	VYICAMLPAEVRLKAQAAREAAQHLVKESQQLRDTSDVLIREAEAALFERQRDLREAMSQRTAS
Ga0318550_105942501	3300031797	Soil	YSCAILPAEVRLKAQAVREAAQHLVKESQQLRDTSDVLIREAEAALFERQRDLREAMSQRTAS
Ga0307473_101460053	3300031820	Hardwood Forest Soil	AKEMREAAQHLVKESQQLRDRSDVLIREAETRLFERQRALRDAMSRRIAS
Ga0307473_104619832	3300031820	Hardwood Forest Soil	MLYGCAMLPSEVRLKAQAVREAAQRLVKKSQQARDKSDVPMREAEAVLFKSQRALREAMSRRAAS
Ga0306925_102512835	3300031890	Soil	PAEVRLKAQAAREAAQHLVKESQQLRDTSDVLIREAEAALFERQRDLREAMSQRTAS
Ga0306925_116542122	3300031890	Soil	RGHVYGCAMLPAEVRLKAQAVREAAQHLVKESQQLRDTSDVLVREAEAALFDRQRALREAMSRRMN
Ga0310910_103544752	3300031946	Soil	HLFGCAMLPADIRIRAQEVREAAQRLVKESHQLRDKADVLIREAETHLVERQRALRTAMAKQAAP
Ga0318563_104889331	3300032009	Soil	LFGCAMLPADIRIRAQEVREAAQRLVKESHQLRDKADVLIREAETHLVERQRALRTAMAKQAAP
Ga0318556_101991421	3300032043	Soil	LPADIRIRAQEVREAAQRLVKESHQLRDKADVLIREAETHLVERQRALRTAMAKQAAP
Ga0306924_100712631	3300032076	Soil	STNCHSTWPRAYICAMVPAEVRLKAQAVREAAQHLVKESQQLRDTSDVLIREAEALLFERLGSLREAMSQRTAF
Ga0318577_100160351	3300032091	Soil	MLPADIRIRAQEVREAAQRLVKESHQLRDKADVLIREAETHLVERQRALRTAMAKQAAP
Ga0318540_106301671	3300032094	Soil	SVRGHLFGCAMLPADIRIRAQEVREAAQRLVKESHQLRDKADVLIREAETHLVERQRALRTAMAKQAAP
Ga0307471_1000218004	3300032180	Hardwood Forest Soil	MLYGCAMLPSEVRLKAQAVREAAQRLVKKSQQARDKSDVPMREAEAVLFKSQRALREAMSRRAASQPTSPSS
Ga0307472_1017639633	3300032205	Hardwood Forest Soil	YGCAMLYGCAMLPSEVRLKAQAVREAAQRLVKKSQQARDKSDVPMREAEAVLFKSQRALREAMSRGAAS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F072069

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences