Metagenome Family F072006

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072006
Family Type	Metagenome
Number of Sequences	121
Average Sequence Length	63 residues
Representative Sequence	MPRYPNVFVQVSDGKPISEIIERAETAMKRAGISSAERREFRACVPRQYALAIDYIREFCETD
Number of Associated Samples	74
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	77.69 %
% of genes near scaffold ends (potentially truncated)	24.79 %
% of genes from short scaffolds (< 2000 bps)	76.03 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (71.901 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (57.025 % of family members)
Environment Ontology (ENVO)	Unclassified (52.066 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (57.025 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.86% β-sheet: 0.00% Coil/Unstructured: 57.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF03401	TctC	1.65
PF13406	SLT_2	0.83
PF12833	HTH_18	0.83
PF00126	HTH_1	0.83
PF08447	PAS_3	0.83
PF16694	Cytochrome_P460	0.83
PF13505	OMP_b-brl	0.83
PF03453	MoeA_N	0.83
PF06689	zf-C4_ClpX	0.83
PF00082	Peptidase_S8	0.83
PF04555	XhoI	0.83
PF00589	Phage_integrase	0.83
PF03150	CCP_MauG	0.83
PF13701	DDE_Tnp_1_4	0.83
PF06707	DUF1194	0.83
PF13474	SnoaL_3	0.83
PF00873	ACR_tran	0.83
PF01124	MAPEG	0.83
PF00072	Response_reg	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.65
COG0303	Molybdopterin Mo-transferase (molybdopterin biosynthesis)	Coenzyme transport and metabolism [H]	0.83
COG1858	Cytochrome c peroxidase	Posttranslational modification, protein turnover, chaperones [O]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.90 %
All Organisms	root	All Organisms	28.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.90 %
cellular organisms	root	All Organisms → cellular organisms	28.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.90 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	28.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	16.53 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.48 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	14.88 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.48 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.90 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.79 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.83 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.83 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.83 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.83 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.90 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.96 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.83 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.83 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.83 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.83 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.48 %
Skermanella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	0.83 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.83 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.83 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	0.83 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.48 %
Sphingobium scionense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium scionense	0.83 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.83 %
Planctomyces	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces	0.83 %
Skermanella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	0.83 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.48 %
Planctomyces bekefii	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → Planctomyces bekefii	0.83 %
Sphingobium scionense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium scionense	0.83 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.83 %
Skermanella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	0.83 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10015455	Not Available	2096	Open in IMG/M
3300002914\|JGI25617J43924_10027694	All Organisms → cellular organisms → Bacteria → Proteobacteria	1999	Open in IMG/M
3300002917\|JGI25616J43925_10071915	Not Available	1460	Open in IMG/M
3300002917\|JGI25616J43925_10391723	Not Available	511	Open in IMG/M
3300005332\|Ga0066388_100621784	Not Available	1699	Open in IMG/M
3300005332\|Ga0066388_101813623	Not Available	1085	Open in IMG/M
3300005332\|Ga0066388_107490662	Not Available	548	Open in IMG/M
3300005555\|Ga0066692_10826247	Not Available	569	Open in IMG/M
3300005764\|Ga0066903_100063277	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	4648	Open in IMG/M
3300005764\|Ga0066903_100294903	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomyces → Planctomyces bekefii	2559	Open in IMG/M
3300005764\|Ga0066903_101266291	Not Available	1375	Open in IMG/M
3300007255\|Ga0099791_10004282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	5846	Open in IMG/M
3300007258\|Ga0099793_10283005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	804	Open in IMG/M
3300007788\|Ga0099795_10002959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4121	Open in IMG/M
3300009038\|Ga0099829_10140334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1920	Open in IMG/M
3300009038\|Ga0099829_10713508	Not Available	833	Open in IMG/M
3300009089\|Ga0099828_11681228	Not Available	558	Open in IMG/M
3300009090\|Ga0099827_10400411	Not Available	1173	Open in IMG/M
3300009090\|Ga0099827_10596686	Not Available	952	Open in IMG/M
3300009143\|Ga0099792_10289469	Not Available	968	Open in IMG/M
3300009143\|Ga0099792_10391400	Not Available	848	Open in IMG/M
3300009143\|Ga0099792_10763184	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300009792\|Ga0126374_10031010	Not Available	2505	Open in IMG/M
3300009792\|Ga0126374_10799316	Not Available	720	Open in IMG/M
3300009792\|Ga0126374_11270348	Not Available	593	Open in IMG/M
3300010043\|Ga0126380_10007639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4690	Open in IMG/M
3300010046\|Ga0126384_10203968	All Organisms → cellular organisms → Bacteria	1567	Open in IMG/M
3300010048\|Ga0126373_13057718	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300010159\|Ga0099796_10187623	Not Available	833	Open in IMG/M
3300010159\|Ga0099796_10361424	Not Available	628	Open in IMG/M
3300010358\|Ga0126370_10488892	Not Available	1037	Open in IMG/M
3300010359\|Ga0126376_10096252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium scionense	2244	Open in IMG/M
3300010359\|Ga0126376_10344857	Not Available	1317	Open in IMG/M
3300010359\|Ga0126376_12041289	Not Available	616	Open in IMG/M
3300010360\|Ga0126372_10564595	Not Available	1084	Open in IMG/M
3300010360\|Ga0126372_12162042	Not Available	605	Open in IMG/M
3300010360\|Ga0126372_12689901	Not Available	549	Open in IMG/M
3300010362\|Ga0126377_10176249	All Organisms → cellular organisms → Bacteria → Proteobacteria	2030	Open in IMG/M
3300010362\|Ga0126377_12565654	Not Available	585	Open in IMG/M
3300010362\|Ga0126377_12699800	Not Available	572	Open in IMG/M
3300010398\|Ga0126383_13377642	Not Available	521	Open in IMG/M
3300011269\|Ga0137392_10005694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7901	Open in IMG/M
3300011269\|Ga0137392_10449288	Not Available	1070	Open in IMG/M
3300011270\|Ga0137391_10320781	Not Available	1334	Open in IMG/M
3300011271\|Ga0137393_11523643	Not Available	558	Open in IMG/M
3300012096\|Ga0137389_11625436	Not Available	542	Open in IMG/M
3300012199\|Ga0137383_10945528	Not Available	629	Open in IMG/M
3300012200\|Ga0137382_11188658	Not Available	542	Open in IMG/M
3300012202\|Ga0137363_10109054	Not Available	2117	Open in IMG/M
3300012203\|Ga0137399_10243115	Not Available	1474	Open in IMG/M
3300012203\|Ga0137399_10694406	Not Available	856	Open in IMG/M
3300012205\|Ga0137362_10072832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2847	Open in IMG/M
3300012205\|Ga0137362_10146217	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2018	Open in IMG/M
3300012205\|Ga0137362_10222234	Not Available	1629	Open in IMG/M
3300012208\|Ga0137376_10727656	Not Available	855	Open in IMG/M
3300012211\|Ga0137377_10085339	Not Available	2977	Open in IMG/M
3300012211\|Ga0137377_10124875	Not Available	2456	Open in IMG/M
3300012362\|Ga0137361_10061027	All Organisms → cellular organisms → Bacteria	3154	Open in IMG/M
3300012362\|Ga0137361_10221863	All Organisms → cellular organisms → Bacteria	1715	Open in IMG/M
3300012362\|Ga0137361_10336106	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1385	Open in IMG/M
3300012362\|Ga0137361_11161904	Not Available	694	Open in IMG/M
3300012582\|Ga0137358_10136581	Not Available	1668	Open in IMG/M
3300012683\|Ga0137398_10033431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2934	Open in IMG/M
3300012917\|Ga0137395_10222411	Not Available	1320	Open in IMG/M
3300012917\|Ga0137395_11105946	Not Available	561	Open in IMG/M
3300012923\|Ga0137359_10088217	All Organisms → cellular organisms → Bacteria	2731	Open in IMG/M
3300012924\|Ga0137413_10439364	Not Available	947	Open in IMG/M
3300012924\|Ga0137413_10781081	Not Available	732	Open in IMG/M
3300012925\|Ga0137419_10798532	Not Available	772	Open in IMG/M
3300012927\|Ga0137416_10508435	Not Available	1038	Open in IMG/M
3300012927\|Ga0137416_11334472	Not Available	648	Open in IMG/M
3300012930\|Ga0137407_10212287	Not Available	1741	Open in IMG/M
3300012930\|Ga0137407_11038028	Not Available	777	Open in IMG/M
3300012944\|Ga0137410_10984663	Not Available	717	Open in IMG/M
3300012971\|Ga0126369_10331981	Not Available	1535	Open in IMG/M
3300012971\|Ga0126369_11698927	Not Available	721	Open in IMG/M
3300015054\|Ga0137420_1386053	Not Available	628	Open in IMG/M
3300015241\|Ga0137418_10051599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3778	Open in IMG/M
3300015241\|Ga0137418_11165739	Not Available	544	Open in IMG/M
3300015245\|Ga0137409_11175550	Not Available	607	Open in IMG/M
3300018468\|Ga0066662_11332819	Not Available	738	Open in IMG/M
3300020199\|Ga0179592_10015480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3351	Open in IMG/M
3300020199\|Ga0179592_10198032	Not Available	911	Open in IMG/M
3300020199\|Ga0179592_10257487	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300020199\|Ga0179592_10350011	Not Available	651	Open in IMG/M
3300020582\|Ga0210395_11033115	Not Available	608	Open in IMG/M
3300021086\|Ga0179596_10071741	Not Available	1504	Open in IMG/M
3300021086\|Ga0179596_10077639	Not Available	1458	Open in IMG/M
3300021086\|Ga0179596_10632991	Not Available	542	Open in IMG/M
3300024347\|Ga0179591_1201852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2479	Open in IMG/M
3300026285\|Ga0209438_1068195	All Organisms → cellular organisms → Bacteria	1164	Open in IMG/M
3300026304\|Ga0209240_1114835	Not Available	933	Open in IMG/M
3300026304\|Ga0209240_1226045	Not Available	568	Open in IMG/M
3300026340\|Ga0257162_1035414	Not Available	619	Open in IMG/M
3300026340\|Ga0257162_1036550	Not Available	611	Open in IMG/M
3300026355\|Ga0257149_1000693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2861	Open in IMG/M
3300026358\|Ga0257166_1049416	Not Available	598	Open in IMG/M
3300026359\|Ga0257163_1024932	Not Available	935	Open in IMG/M
3300026376\|Ga0257167_1075627	Not Available	530	Open in IMG/M
3300026490\|Ga0257153_1120750	Not Available	514	Open in IMG/M
3300026494\|Ga0257159_1079634	Not Available	567	Open in IMG/M
3300026508\|Ga0257161_1101666	Not Available	599	Open in IMG/M
3300026508\|Ga0257161_1112589	Not Available	569	Open in IMG/M
3300026551\|Ga0209648_10032809	All Organisms → cellular organisms → Bacteria	4525	Open in IMG/M
3300026551\|Ga0209648_10570410	Not Available	628	Open in IMG/M
3300026551\|Ga0209648_10624178	Not Available	591	Open in IMG/M
3300026555\|Ga0179593_1134646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2707	Open in IMG/M
3300026555\|Ga0179593_1181504	Not Available	3150	Open in IMG/M
3300026557\|Ga0179587_10194937	Not Available	1281	Open in IMG/M
3300026557\|Ga0179587_10951534	Not Available	566	Open in IMG/M
3300027512\|Ga0209179_1002042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2638	Open in IMG/M
3300027862\|Ga0209701_10088684	All Organisms → cellular organisms → Bacteria	1943	Open in IMG/M
3300027874\|Ga0209465_10085917	Not Available	1535	Open in IMG/M
3300027903\|Ga0209488_10010900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6662	Open in IMG/M
3300027903\|Ga0209488_10014429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5760	Open in IMG/M
3300028536\|Ga0137415_10100760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2741	Open in IMG/M
3300028536\|Ga0137415_10223371	Not Available	1697	Open in IMG/M
3300028536\|Ga0137415_10456159	Not Available	1084	Open in IMG/M
3300031715\|Ga0307476_10839211	Not Available	679	Open in IMG/M
3300031833\|Ga0310917_11102304	Not Available	530	Open in IMG/M
3300032261\|Ga0306920_101080319	Not Available	1165	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	94.21%
Loam	Environmental → Terrestrial → Soil → Loam	5.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	72.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.40%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.79%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	57.02%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	15.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	8.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026376	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100154552	3300000597	Forest Soil	MSPRYPEVFVRVADGVPLSTILDRVDAAMRNAKISTAIRHEFKTCIPEQYALAVNYIREWVETD*
JGI25617J43924_100276945	3300002914	Grasslands Soil	VPRYPNVFVRVSDGRPISEIIERAETAMKRAGISSAERREFRACVPHQYALAIDYIREFCETD*
JGI25616J43925_100719153	3300002917	Grasslands Soil	MPRYPNVFVEVSDGKPISEIIERAETAMKRAGISSAERREFRACVPRQYALAIDYIREFCETD*
JGI25616J43925_103917232	3300002917	Grasslands Soil	VFVSVSDGKPITEIIERAETAMKRAGISSAERREFRACVPDQYAFAIDYIREWCETD*
Ga0066388_1006217843	3300005332	Tropical Forest Soil	MPRYPHVFVSVSDGKPIAEIIERAETAMKRARVCSAERREFRACVPAQYALAVDYIREWCETD*
Ga0066388_1018136234	3300005332	Tropical Forest Soil	MPRYANIFVPASDGKPLTEIIERVDRAMKRAGINSAKRCEFREGVPEQYALAINFIREWVETD*
Ga0066388_1074906621	3300005332	Tropical Forest Soil	MPRFPHVFVSVSDGKPISKIIERAETAMKRAGISSTERREFRACVPAQYALAIEYIREWCETD*
Ga0066692_108262471	3300005555	Soil	MPRYPNVFVLVSDGRPISDIIERAERAMKRAGISSAKRCEFRAGIPRQYALAVDYIREFCETD*
Ga0066903_1000632771	3300005764	Tropical Forest Soil	MPRYPNVFVPVSDGKPIGEIIERADKAMKRAGVSSAKRCDFRAGVPRQYALAVDYIREFCETD*
Ga0066903_1002949036	3300005764	Tropical Forest Soil	MSRYPNVFVPVSDGKPIDEIIERADKAMKRAGVSAAKRCDFRAGMPRQYALAVDYIREFCETD*
Ga0066903_1012662914	3300005764	Tropical Forest Soil	MPRYPNVFVQVSDGKPISEVIERAETAMKRAGIGSTERREFRACVPHQYALAVEYIREFCETD*
Ga0099791_100042821	3300007255	Vadose Zone Soil	MPRYPNVFVPVSDGRPIGEIIERADNAMKCAGINSAKRREFRAGMPGQYALAVDYIREFCETD*
Ga0099793_102830052	3300007258	Vadose Zone Soil	MPRYPNVFVPVSDGKPISEIIVRADRAMKRAGISSAERREFRACVPRQYALAIDYIREWCETD*
Ga0099795_100029599	3300007788	Vadose Zone Soil	MPRYPHVFVSVSDGKPITEIIERAETAMKRAGISSPERREFRACVPDQYAFAIDYIREWCETD*
Ga0099829_101403341	3300009038	Vadose Zone Soil	MPRYPNIFVQVSDGKPISEIIERAETAMKRAGITSAKRCEFRAGIPGQYALAVDYIREFFETD*
Ga0099829_107135081	3300009038	Vadose Zone Soil	MPRYPNVFVQVSDGKPISEIIERAETAMKRAGISSAERREFRACVPHQYALAIDFIREFCETD*
Ga0099828_116812281	3300009089	Vadose Zone Soil	MPRYPNVFVQVSDGKPISEIIERAEPAMKRAGISSAERREFLACVPRQYALAIDYIREFCETD*
Ga0099827_104004112	3300009090	Vadose Zone Soil	MPRYPNVFVPVSDGKPISEIIERAERAMKRAGINSAKRCEFRAGIPEQYALAVDYIREFFETD*
Ga0099827_105966861	3300009090	Vadose Zone Soil	MPRYPNVFVPVSDGKPINEIIERAETAMKRAGISSAERREFLACVPRQYALAIDYIREFCETD*
Ga0099792_102894691	3300009143	Vadose Zone Soil	MPRYPHVFVPVSDGKPIDEIIERVETAMKRAGISSAKRSEFRAGIPHEYALAVDYIREFCETD*
Ga0099792_103914001	3300009143	Vadose Zone Soil	MPRYPNVFVPVSDGKPIREIIERADKAMKLAGISSAKRCEFRAGIPRQYALAVDYIRDFCETE*
Ga0099792_107631843	3300009143	Vadose Zone Soil	FVPVSDGKPISEIIERADRAMKRAGISSAERREFRACVPRQYALAIDYIREWCETD*
Ga0126374_100310101	3300009792	Tropical Forest Soil	MPRYPHVFVSVSDGKPITEIIERAETAMKRAGVSSAERREFRACVPGQYALAIDYIREWCETD*
Ga0126374_107993163	3300009792	Tropical Forest Soil	LVSDGKPITEIIERAETAMKRAGISSAERREFRACLPNQYALAIDYIREWCETD*
Ga0126374_112703481	3300009792	Tropical Forest Soil	MPRYPEVFVRVADGAPLTQILERVDAAMRRAGISSAQRGEFKACVPRQYAFAIDYIREWCETD*
Ga0126380_1000763912	3300010043	Tropical Forest Soil	MPRHPDVFVSVSDGKPITEIIERAEKAMKRAGISSAERREFRACVPGQYALAVDYIREWCETD*
Ga0126384_102039681	3300010046	Tropical Forest Soil	MPRYPNVFVPVSDGKPIGEIIERADKAMKRAGVSSAKRCDFRAGVPKQYALAVDYIREFCETD*
Ga0126373_130577182	3300010048	Tropical Forest Soil	AECIRGFVRDVKGRPMPRYSHVFVSVCDGKPITEIIERAETAMKRAGISSAERREFRACVPGQYALAVDYIREWCETD*
Ga0099796_101876233	3300010159	Vadose Zone Soil	MPRYPNVFVPVSDGKPISEIIERADRAMKRAGISSAERREFRACVPRQYALAIDYIREWCETD*
Ga0099796_103614241	3300010159	Vadose Zone Soil	MPRYPNVFVPVSDGKPIDEIIERVETAMKRAGISSAKRSEFRAGIPREYALAVDYIR
Ga0126370_104888924	3300010358	Tropical Forest Soil	VSDGKPIGEIIERADKAMKRAGVSSAKRCDFRAGVPRQYALAVDYIREFCETD*
Ga0126376_100962526	3300010359	Tropical Forest Soil	MPRYPNVFVPVSDGKPIGEIIERADKAMKRAGVSSAKRCDFRAGVPRQYALAVDYIREFCEPD*
Ga0126376_103448571	3300010359	Tropical Forest Soil	MPRYPHVFVSVSDGKRITEIIERAVTSMKRAGVSSAERREFRACVPGQYALAIDYIR
Ga0126376_120412891	3300010359	Tropical Forest Soil	MPRYPHVFVSVSDGKPIAEIIERAETAMKRGGLSSAERREFRTCVPSQYAFAIAYIREWCETD*
Ga0126372_105645952	3300010360	Tropical Forest Soil	MPRYPHVFVSVSDGKPIAEIIERAETAMKRGGLSSAERREFRTCVPSQYALAIAYIREWCETD*
Ga0126372_121620422	3300010360	Tropical Forest Soil	MPRYPHVFVSVSDGKPITEIIERVETAMRHVGISSAERREFSACVPGQYALAIDYIR
Ga0126372_126899012	3300010360	Tropical Forest Soil	VPSYAVERAAEDGLMPRYPNVFVPVSDGKPIGEIIERADKALKRAGVSSAKRCDFRAGVPRQYALAVDYIREFCETD*
Ga0126377_101762495	3300010362	Tropical Forest Soil	DPIGSGRLMPRYPHVFVPVSDGKPIGEIIERADKAMKRAGVSSAKRCDFRAGVPKQYALAVDYIREFCETD*
Ga0126377_125656542	3300010362	Tropical Forest Soil	VRSYALERAAREGRASAEDGLMPRYPNVFVPVSDGKPIGEIIERADKAMKRAGVSSAKRCDFRAGVPRQYALAVDYIREFCETD*
Ga0126377_126998002	3300010362	Tropical Forest Soil	MPRYAHVFVSVSDGKPITEIIERAETAMKRAGVSSAERREFRACVPGQYALAIDYIREWCETD*
Ga0126383_133776421	3300010398	Tropical Forest Soil	VRSYAVERAAREGRASAEDGLMPRYPNVFVPVSDGKPIGEIIERADKAMKRAGVSSAKRCDFRAGVPRQYALAVDYIREFCETD*
Ga0137392_100056946	3300011269	Vadose Zone Soil	MPRYPNVFVSVSDGKPISEIIERAETAMERAGISSAKRCEFRAGIPGQYALAVDYIREFCETD*
Ga0137392_104492882	3300011269	Vadose Zone Soil	MPRYPNVFVPVSDGKPIDEIIERVETAMKRAGISSAKRSEFRAGIPREYALAVDYIREFCETD*
Ga0137391_103207811	3300011270	Vadose Zone Soil	ETGLMPRYPNVFVPVSDGKPINEIIERAETAMKRAGISSAERREFLACVPRQYALAIDYIREFCETD*
Ga0137393_115236431	3300011271	Vadose Zone Soil	NIFVQVSDGKPISEIIERAETAMERAGISSAKRREFRDGIPGQYALAVDYIREFCETD*
Ga0137389_116254361	3300012096	Vadose Zone Soil	VSDGKPISEIIERAETAMKRAGISSAERREFLACVPRQYALAIDYIREFCETD*
Ga0137383_109455281	3300012199	Vadose Zone Soil	MPRYPECFVRVTDGAPLVTILERTDRAMRNAGISSARRGEFKACLPHTYALAVDYIREWCETD*
Ga0137382_111886581	3300012200	Vadose Zone Soil	MPGYPECFVRVTDGAPLVTILERTDRAMRNAGISSARRGEFKACLPHTYALAVDYIREWCETD*
Ga0137363_101090544	3300012202	Vadose Zone Soil	MPRYPNVFVQVSDGKPIREIIERADKAMKRAGISSTKRCEFRAGIPREYAFAVDYIREFCETD*
Ga0137399_102431153	3300012203	Vadose Zone Soil	MSRYPNVFVPVSDGKPISKIIERADKAMKRAGVSSAKRSDFRAGIPRQYALAVDYIREFCETD*
Ga0137399_106944062	3300012203	Vadose Zone Soil	VPRYPNVFVAVSDGKPINEIIERADKAMKRAGISPAKRCEFRAGIPEQYALAVNYIREFCETD*
Ga0137362_100728324	3300012205	Vadose Zone Soil	MPRYPNVFVPVSDGKPINEIIERAERAMKRAGISSTKRCEFRAGIPREYAFAVDYIREFCETD*
Ga0137362_101462172	3300012205	Vadose Zone Soil	MPRYPNVFVQVSDGKPISEIIERAETAMKRAGISSAERREFHACVPDQYALAVDYIREFFETD*
Ga0137362_102222343	3300012205	Vadose Zone Soil	MPRYPNVFVPVSDGKPINEIIERAETAMKRAGVSSAERREFLACVPRQYALAIDYIREFCETD*
Ga0137376_107276562	3300012208	Vadose Zone Soil	PVSDGKPISEIIERADRAMKRAGISSAERREFRADVPEQYALAIDYIREWCETD*
Ga0137377_100853393	3300012211	Vadose Zone Soil	MPRYPNIFVPVSDGKPISEIIERADIAMKRAGISFAKRCEFRAGVPRHYALAVDYIRQFCETD*
Ga0137377_101248752	3300012211	Vadose Zone Soil	MPRYPNVFVQVSDGKPISEIIERADRAMKRAGISSAERREFRADVPEQYALAIDYIREWCETD*
Ga0137361_100610273	3300012362	Vadose Zone Soil	MPRYPHVFVSVSDGKPITEIIERAETAMKRAGISSAKRCEFRAGIPEHYALAVDYIREFFETD*
Ga0137361_102218631	3300012362	Vadose Zone Soil	MPRYPNVFVPVSDGKPISEIIERAEKAMKRAGVSSAKRCDFREGAPRQYALAVDY
Ga0137361_103361061	3300012362	Vadose Zone Soil	MPRYPNVFVEVSDGKPIGEIIERAETAMKRAGISSAERREFRACVPHQYALAVDYIREFCETD*
Ga0137361_111619041	3300012362	Vadose Zone Soil	RYPNVFVPVSDGKPINEIIERAETAMKRAGVSSAERREFLACVPRQYALAIDYIREFCETD*
Ga0137358_101365811	3300012582	Vadose Zone Soil	MPRYPNVFVPVSDGKPINEIIERAERAMKRAGISSPKRCEFREGEPREYALAVDYIREFCETD*
Ga0137398_100334319	3300012683	Vadose Zone Soil	MPRYPHVFVSVSDGKPITEIIERAETAMKRAGISSAERREFRACVPRQYALAIDYIREWCET
Ga0137395_102224112	3300012917	Vadose Zone Soil	MPRYPNVFVEVSDGKPIGEIIERAETAMKRAGISSAERREFRACVPHQYALVVDYIREFCETD*
Ga0137395_111059461	3300012917	Vadose Zone Soil	MPRYPNVFVPVSDGKPINEIIERAERAMKRAGISSAKRCEFREGVPREYALAVDYIREFCETD*
Ga0137359_100882172	3300012923	Vadose Zone Soil	MPRYPNVFVPVSDGKPISEIIERAEKAMKRAGVSSAKRCDFREGAPRQYALAVDYIREFCETD*
Ga0137413_104393641	3300012924	Vadose Zone Soil	MPRYPNVFVPVSDGKPISEIIERAERAMKRAGINSAKRCEFRAGIPGQYALAVDYIREFCETD*
Ga0137413_107810812	3300012924	Vadose Zone Soil	MPRYPNVFVPVSDGKPISEIIERADRAMKRAGISSAERREFRACVPRQYALAIDCIREWCETD*
Ga0137419_107985321	3300012925	Vadose Zone Soil	YPNVFVPVSDGKPINEIIERAGTAMKRAGISSVERREFLACVPRQYALAIDYIREFCETD
Ga0137416_105084353	3300012927	Vadose Zone Soil	MPRYPHVFVSDSDGKPITEIIERAETAMKRAGISSPERREFRACVPDQYAFAIDYIREWCETD*
Ga0137416_113344722	3300012927	Vadose Zone Soil	MPRYPNVFVPVSDGKPIGEIIERVETAMKRAGISSAKRSEFRAGIPREYALAVDYIREFCETD*
Ga0137407_102122874	3300012930	Vadose Zone Soil	ECFVRVTDGAPLVTILERTDRAMRNAGISSARRGEFKACLPHTYALAVDYIREWCETD*
Ga0137407_110380281	3300012930	Vadose Zone Soil	VQVSDGKPISEIIERAEMAMKRAGIRSSERREFRACVPRQYALAIDFIREWVETD*
Ga0137410_109846632	3300012944	Vadose Zone Soil	MPRYPNVFVPVSDGKPINEIIERAETAMKRAGISSVERREFLACVPRQYALAIDYIREFCETD*
Ga0126369_103319814	3300012971	Tropical Forest Soil	MRSYAVRRTRGRASGEDGLMPRYPNVFVPVSDGKPIGEIIERADKAMKRAGVSSAKRCDFRAGVPRQYALAVDYIREFCETD*
Ga0126369_116989271	3300012971	Tropical Forest Soil	MPRYPHVFVSVSDGKPIAEIIERAETAMKRARIGSAERCEFRAGIPQQYALAVDYIREFCETD*
Ga0137420_13860531	3300015054	Vadose Zone Soil	MPRYPHVFVSVSDDGKPITEIIERAETAMKRAGISSPERREFRACVPDQYAFAIDYIREWCETD*
Ga0137418_100515994	3300015241	Vadose Zone Soil	MSRYPNVFVPVSDGKPICEIIERADKAMKCAGVSSAKRRDFHAGVPRQYALAVDYIREFCETD*
Ga0137418_111657391	3300015241	Vadose Zone Soil	MPRYPNVFVPVSDGKPISEIIERADRAMKQAGISSAERREFRACVPRQYALAIDYIREWCET
Ga0137409_111755502	3300015245	Vadose Zone Soil	YPNVFVEVSDGKPIGEIIERAETAMKRAGISSAERREFRACVPHQYALAIDFIREFCETD
Ga0066662_113328191	3300018468	Grasslands Soil	MPRYPECFVRVTDGAPLVTILERTDRAMRNAGISSARRGEFKACLPHTYALAVDYIREWCETD
Ga0179592_100154802	3300020199	Vadose Zone Soil	MSRYPNVFVPVSDGKPISKIIERADKAMKRAGVSSAKRSDFRAGIPRQYALAVDYIREFCETD
Ga0179592_101980323	3300020199	Vadose Zone Soil	RRDRLMPRYPNVFVPVSDGRPIGEIIERADNAMKCAGINSAKRREFRAGMPGQYALAVDYIREFCETD
Ga0179592_102574872	3300020199	Vadose Zone Soil	MPRYPNVFVPVSDGKPISEIIERADRAMKRAGISSAERREFRACVPRQYALAIDFIREWVETD
Ga0179592_103500111	3300020199	Vadose Zone Soil	MPRYPHVFVSVSDGKPITEIIERAETAMKRAGISSPERREFRACVPDQYAFAIDYIREWCETD
Ga0210395_110331151	3300020582	Soil	MPRYPNVFVSVSDGKPISEIIQRAETAMKRAGISSAERREFRACVPGQYALAIDYIREWCETD
Ga0179596_100717413	3300021086	Vadose Zone Soil	MPRYPNIFVQVSDGKPISEIIERAETAMKRAGITSAKRCEFRAGIPGQYALAVDYIREFFETD
Ga0179596_100776392	3300021086	Vadose Zone Soil	MPRYPNVFVPVSDGKPINEIIERAETAMKRAGISSAERREFLACVPRQYALAIDYIREFCETD
Ga0179596_106329911	3300021086	Vadose Zone Soil	MPRYPNVFVSVSDGKPISEIIERAETAMERAGISSAKRCEFRAGIPGQYALAVDYIREFCETD
Ga0179591_12018524	3300024347	Vadose Zone Soil	MPRYPNVFVPVSDGKPLTEIIERTDKAMKRAGISSAKRCEFRAGVPGHYALAVDFIREWVETD
Ga0209438_10681953	3300026285	Grasslands Soil	MPRYPNVFVPVSDGKPISEIIERADRAMKRAGISSAERREFRACVPRQYALAIDYIREWCETD
Ga0209240_11148351	3300026304	Grasslands Soil	VSDGRPISEIIERAETAMKRAGISSAERREFRACVPHQYALAIDYIREFCETD
Ga0209240_12260452	3300026304	Grasslands Soil	MPRYPNVFVQVSDGKPISEIIERAETAMKRAGISSAERREFRACVPRQYALAIDYIREFCETD
Ga0257162_10354141	3300026340	Soil	VFVSVSDGKPITEIIERAETAMKRAGISSPERREFRACVPDQYAFAIDYIREWCETD
Ga0257162_10365501	3300026340	Soil	MPRYPNVFVQVSDGKPISEIIERAETAMKRAGISSAERREFRACVPRQCALAIDYIREFCETD
Ga0257149_10006931	3300026355	Soil	MPRYPHVFVPVSDGKPIDEIIERVETAMKRAGISSAKRSEFRAGIPHEYALAVDYIREFCETD
Ga0257166_10494161	3300026358	Soil	MPRYPNVFVPVSDGKPISEIIERADRAMKRAGISSAERREFRACVPRQYALAIDCIREWCETD
Ga0257163_10249323	3300026359	Soil	MPRYPNVFVQVSDGKPIREIIERADKAMKRAGISSAKRCEFRAGVPREYAFAVDYIREFCETD
Ga0257167_10756272	3300026376	Soil	MPRYPHVFVSVSDGKPITEIIERAETAMKRAGISSAERREFRACVPRQYALAIDYIREWCETD
Ga0257153_11207502	3300026490	Soil	NVFVPVSDGKPLTEIIERADKAMKRAGISSAKRCEFRAGVPEQYALAIDFIREWVETD
Ga0257159_10796341	3300026494	Soil	TERIQGSVTRRWDGLMPRYPHVFVSVSDGKPITEIIERAETAMKRAGISSAERREFRACVPDQYAFAIDYIREWCETD
Ga0257161_11016661	3300026508	Soil	FVPVSDGKPLTEIIERTDKAMKRAGISSAKRCEFRAGVPGHYALAVDFIREWVETD
Ga0257161_11125891	3300026508	Soil	VAQGETGLMPRYPNVFVPVSDGKPINEIIERAETAMKRAGISSAERREFRACVPRQCALAIDYIREFCETD
Ga0209648_100328094	3300026551	Grasslands Soil	VPRYPNVFVRVSDGRPISEIIERAETAMKRAGISSAERREFRACVPHQYALAIDYIREFCETD
Ga0209648_105704102	3300026551	Grasslands Soil	LMSRYPNVFVPVSDGKPIGEIIERADKAMKRAGVSSAKRCDFRAGMPRQYALAVDYIREFCETD
Ga0209648_106241782	3300026551	Grasslands Soil	MPRYPHVFVSVSDGKPITEIIERAETAMKRAGISSAERREFRACVPDQYAFAIDYIREWCETD
Ga0179593_11346461	3300026555	Vadose Zone Soil	MPRYPNVFVPVSDGKPISEIIERAERAMKRAGINSAKRCEFRAGIPEQYALAVDYIREFFETD
Ga0179593_11815045	3300026555	Vadose Zone Soil	VPRYPNVFVAVSDGKPINEIIERADKAMKRAGISPAKRCEFRAGIPEQYALAVNYIREFCETD
Ga0179587_101949373	3300026557	Vadose Zone Soil	MPRYPNVFVPVSDGRPIGEIIERADNAMKCAGINSAKRREFRAGMPGQYALAVDYIREFCETD
Ga0179587_109515343	3300026557	Vadose Zone Soil	PRYPNVFVPVSDGKPISEIIERADRAMKRAGISSAERREFRACVPRQYALAIDYIREWCETD
Ga0209179_10020429	3300027512	Vadose Zone Soil	MPRYPHVFVSVSDGKPITEIIERAETAMKRAGISSPERREFRACVPRQYALAIDYIREWCETD
Ga0209701_100886843	3300027862	Vadose Zone Soil	MPRYPNIFVQVSDGKPISEIIERAETAMKRAGITSAKRCEFRAGIPGQYALAVDYIREFCETD
Ga0209465_100859173	3300027874	Tropical Forest Soil	MSRYPNVFVPVSDGKPIGEIIERADKAMKRAGVSSAKRCDFRAGVPRQYALAVDYIREFCETD
Ga0209488_100109001	3300027903	Vadose Zone Soil	MPRYPNVFVPVSDGKPIREIIERADKAMKLAGISSAKRCEFRAGIPRQYALAVDYIRDFCETE
Ga0209488_100144293	3300027903	Vadose Zone Soil	MPRYPNVFVPVSDGKPISEIIERADRAMKRAGISSARRCEFRAGIPRQYSLAVDYIREFCETD
Ga0137415_101007605	3300028536	Vadose Zone Soil	YPHVFVSDSDGKPITEIIERAETAMKRAGISSPERREFRACVPDQYAFAIDYIREWCETD
Ga0137415_102233713	3300028536	Vadose Zone Soil	MPRYPNVFVQVSDGKPISEIIERAETAMERAGISSAKRREFRDGIPGQYALAVDYIREFCETD
Ga0137415_104561593	3300028536	Vadose Zone Soil	MSRYPNVFVPVSDGKPISEIIERAEKAMKRAGVSSAKRCDFRAGIPRQYALAVDYIREFCETD
Ga0307476_108392111	3300031715	Hardwood Forest Soil	YPRARDAKVDGVMPRYPNVFVSVSDGKPISEIIDRAETAMKRAGISSAERREFRARVPDQYALAIDYIREWCETD
Ga0310917_111023042	3300031833	Soil	PYAVERAAEDGLMPRYPNVFVPVSDGKPIGEIIERADKALKRAGVSSAKRCDFRAGVPRQYALAVDYIREFCETD
Ga0306920_1010803192	3300032261	Soil	MPRYPNVFVPVSDGKPIDEIIERADKAMKRAGVSSAKRCDFRAGVPRQYALAVDYIREFCETD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F072006

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences