Metagenome / Metatranscriptome Family F071983

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071983
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	61 residues
Representative Sequence	ARNENRLWALYIYLKSGGLAMTWTHTVIDIVRGRKEAYAYERELVKLFEPELNDQYL
Number of Associated Samples	101
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	1.65 %
% of genes near scaffold ends (potentially truncated)	96.69 %
% of genes from short scaffolds (< 2000 bps)	84.30 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (49.587 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (26.446 % of family members)
Environment Ontology (ENVO)	Unclassified (62.810 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (78.512 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.47% β-sheet: 0.00% Coil/Unstructured: 63.53%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF08722	Tn7_TnsA-like_N	0.83
PF16363	GDP_Man_Dehyd	0.83
PF00004	AAA	0.83
PF04434	SWIM	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG4279	Uncharacterized protein, contains SWIM-type Zn finger domain	Function unknown [S]	0.83
COG4715	Uncharacterized protein, contains SWIM-type Zn finger domain	Function unknown [S]	0.83
COG5431	Predicted nucleic acid-binding protein, contains SWIM-type Zn-finger domain	General function prediction only [R]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.41 %
Unclassified	root	N/A	49.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.59 %
Viruses	superkingdom	All Organisms → Viruses	44.63 %
cellular organisms	root	All Organisms → cellular organisms	5.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	27.27 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	17.36 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	5.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	27.27 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	17.36 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.31 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	2.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	27.27 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	17.36 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.31 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	2.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	27.27 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	17.36 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.31 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	27.27 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	16.53 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.31 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	2.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	27.27 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	16.53 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.31 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	27.27 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	16.53 %
unclassified Flavobacteriales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales	2.48 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.48 %
Bradyrhizobium septentrionale	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium septentrionale	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.59 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	27.27 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	16.53 %
Flavobacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2.48 %
Bradyrhizobium sp. CCGB20	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGB20	2.48 %
Bradyrhizobium septentrionale	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium septentrionale	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000756\|JGI12421J11937_10139370	Not Available	611	Open in IMG/M
3300000756\|JGI12421J11937_10145052	Not Available	593	Open in IMG/M
3300002835\|B570J40625_100729267	Not Available	882	Open in IMG/M
3300003277\|JGI25908J49247_10101012	Not Available	695	Open in IMG/M
3300003277\|JGI25908J49247_10136330	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	576	Open in IMG/M
3300003394\|JGI25907J50239_1065796	Not Available	722	Open in IMG/M
3300003411\|JGI25911J50253_10104985	Not Available	857	Open in IMG/M
3300003411\|JGI25911J50253_10190090	Not Available	571	Open in IMG/M
3300003429\|JGI25914J50564_10004619	All Organisms → Viruses → Predicted Viral	4613	Open in IMG/M
3300003488\|JGI25919J51413_1003384	All Organisms → Viruses → Predicted Viral	1272	Open in IMG/M
3300003491\|JGI25924J51412_1050114	Not Available	656	Open in IMG/M
3300004054\|Ga0063232_10248451	Not Available	537	Open in IMG/M
3300004112\|Ga0065166_10219137	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	755	Open in IMG/M
3300004124\|Ga0066178_10012095	All Organisms → Viruses → Predicted Viral	1849	Open in IMG/M
3300005527\|Ga0068876_10039090	All Organisms → Viruses → Predicted Viral	2931	Open in IMG/M
3300005527\|Ga0068876_10263517	Not Available	986	Open in IMG/M
3300005662\|Ga0078894_10902087	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	766	Open in IMG/M
3300005662\|Ga0078894_11499910	Not Available	560	Open in IMG/M
3300005662\|Ga0078894_11548408	Not Available	549	Open in IMG/M
3300007545\|Ga0102873_1077431	Not Available	1009	Open in IMG/M
3300007549\|Ga0102879_1194171	Not Available	614	Open in IMG/M
3300007561\|Ga0102914_1269317	Not Available	521	Open in IMG/M
3300007617\|Ga0102897_1220093	Not Available	565	Open in IMG/M
3300008055\|Ga0108970_10698055	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	503	Open in IMG/M
3300008107\|Ga0114340_1145301	Not Available	882	Open in IMG/M
3300008108\|Ga0114341_10016573	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6102	Open in IMG/M
3300008113\|Ga0114346_1219850	Not Available	962	Open in IMG/M
3300008116\|Ga0114350_1054227	All Organisms → Viruses → Predicted Viral	1439	Open in IMG/M
3300008119\|Ga0114354_1000247	Not Available	49806	Open in IMG/M
3300008448\|Ga0114876_1057042	All Organisms → Viruses → Predicted Viral	1728	Open in IMG/M
3300009068\|Ga0114973_10268891	Not Available	915	Open in IMG/M
3300009151\|Ga0114962_10399203	Not Available	744	Open in IMG/M
3300009164\|Ga0114975_10097268	All Organisms → Viruses → Predicted Viral	1704	Open in IMG/M
3300009164\|Ga0114975_10263600	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	961	Open in IMG/M
3300009180\|Ga0114979_10230501	All Organisms → Viruses → Predicted Viral	1114	Open in IMG/M
3300009181\|Ga0114969_10419009	Not Available	763	Open in IMG/M
3300009183\|Ga0114974_10201246	All Organisms → Viruses → Predicted Viral	1216	Open in IMG/M
3300009183\|Ga0114974_10224386	All Organisms → Viruses → Predicted Viral	1136	Open in IMG/M
3300009183\|Ga0114974_10732786	Not Available	535	Open in IMG/M
3300010160\|Ga0114967_10064020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGB20	2252	Open in IMG/M
3300010334\|Ga0136644_10770224	Not Available	519	Open in IMG/M
3300010354\|Ga0129333_10919277	Not Available	739	Open in IMG/M
3300010354\|Ga0129333_11385701	Not Available	579	Open in IMG/M
3300010370\|Ga0129336_10369177	Not Available	787	Open in IMG/M
3300010374\|Ga0114986_1102639	Not Available	518	Open in IMG/M
3300010885\|Ga0133913_13087069	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1106	Open in IMG/M
3300012758\|Ga0138285_1105871	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	572	Open in IMG/M
3300013004\|Ga0164293_10501874	Not Available	801	Open in IMG/M
3300017774\|Ga0181358_1218068	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	615	Open in IMG/M
3300017778\|Ga0181349_1041379	All Organisms → Viruses → Predicted Viral	1826	Open in IMG/M
3300017778\|Ga0181349_1271457	Not Available	559	Open in IMG/M
3300019784\|Ga0181359_1035361	All Organisms → Viruses → Predicted Viral	1934	Open in IMG/M
3300020048\|Ga0207193_1368888	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	972	Open in IMG/M
3300020084\|Ga0194110_10286636	All Organisms → Viruses → Predicted Viral	1173	Open in IMG/M
3300020141\|Ga0211732_1187839	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	899	Open in IMG/M
3300020141\|Ga0211732_1236062	All Organisms → Viruses → Predicted Viral	2161	Open in IMG/M
3300020160\|Ga0211733_10491267	Not Available	922	Open in IMG/M
3300020179\|Ga0194134_10205155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium septentrionale	843	Open in IMG/M
3300020179\|Ga0194134_10318158	Not Available	606	Open in IMG/M
3300020190\|Ga0194118_10141434	All Organisms → Viruses → Predicted Viral	1426	Open in IMG/M
3300020196\|Ga0194124_10449476	Not Available	576	Open in IMG/M
3300020205\|Ga0211731_11684981	Not Available	584	Open in IMG/M
3300020221\|Ga0194127_10695020	Not Available	638	Open in IMG/M
3300020222\|Ga0194125_10142621	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1845	Open in IMG/M
3300020560\|Ga0208852_1032474	Not Available	933	Open in IMG/M
3300021093\|Ga0194123_10455252	Not Available	575	Open in IMG/M
3300021141\|Ga0214163_1036797	All Organisms → Viruses → Predicted Viral	1350	Open in IMG/M
3300021336\|Ga0210307_1247794	Not Available	958	Open in IMG/M
3300021424\|Ga0194117_10368210	Not Available	664	Open in IMG/M
3300021424\|Ga0194117_10403323	Not Available	626	Open in IMG/M
3300021961\|Ga0222714_10246994	All Organisms → Viruses → Predicted Viral	1003	Open in IMG/M
3300024306\|Ga0255148_1038174	Not Available	875	Open in IMG/M
3300024343\|Ga0244777_10716991	Not Available	597	Open in IMG/M
3300024354\|Ga0255171_1000438	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	11565	Open in IMG/M
3300024861\|Ga0256312_1028970	All Organisms → Viruses → Predicted Viral	1159	Open in IMG/M
3300024867\|Ga0255267_1144789	Not Available	547	Open in IMG/M
3300027144\|Ga0255102_1058771	Not Available	614	Open in IMG/M
3300027147\|Ga0255113_1028929	All Organisms → Viruses → Predicted Viral	1144	Open in IMG/M
3300027150\|Ga0255112_1007224	All Organisms → Viruses → Predicted Viral	2885	Open in IMG/M
3300027154\|Ga0255111_1011294	All Organisms → Viruses → Predicted Viral	2034	Open in IMG/M
3300027154\|Ga0255111_1071013	Not Available	658	Open in IMG/M
3300027229\|Ga0208442_1049068	Not Available	731	Open in IMG/M
3300027231\|Ga0208172_1060113	Not Available	658	Open in IMG/M
3300027241\|Ga0208805_1080097	Not Available	543	Open in IMG/M
3300027260\|Ga0208027_1053232	Not Available	811	Open in IMG/M
3300027299\|Ga0255124_1001772	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5616	Open in IMG/M
3300027300\|Ga0255140_1006816	All Organisms → Viruses → Predicted Viral	2719	Open in IMG/M
3300027396\|Ga0255146_1113010	Not Available	555	Open in IMG/M
3300027534\|Ga0255125_1070358	Not Available	725	Open in IMG/M
3300027586\|Ga0208966_1042554	All Organisms → Viruses → Predicted Viral	1309	Open in IMG/M
3300027600\|Ga0255117_1092577	Not Available	576	Open in IMG/M
3300027608\|Ga0208974_1019945	All Organisms → Viruses → Predicted Viral	2091	Open in IMG/M
3300027608\|Ga0208974_1113650	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	712	Open in IMG/M
3300027644\|Ga0209356_1000110	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	28408	Open in IMG/M
3300027644\|Ga0209356_1077281	Not Available	996	Open in IMG/M
3300027679\|Ga0209769_1255175	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	532	Open in IMG/M
3300027688\|Ga0209553_1197361	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	656	Open in IMG/M
3300027689\|Ga0209551_1113639	Not Available	868	Open in IMG/M
3300027689\|Ga0209551_1275348	Not Available	500	Open in IMG/M
3300027708\|Ga0209188_1035777	All Organisms → Viruses → Predicted Viral	2328	Open in IMG/M
3300027720\|Ga0209617_10304342	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	596	Open in IMG/M
3300027732\|Ga0209442_1010622	All Organisms → Viruses → Predicted Viral	4487	Open in IMG/M
3300027732\|Ga0209442_1158703	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	866	Open in IMG/M
3300027769\|Ga0209770_10181903	Not Available	837	Open in IMG/M
3300027772\|Ga0209768_10042652	All Organisms → Viruses → Predicted Viral	2425	Open in IMG/M
3300027782\|Ga0209500_10380407	Not Available	574	Open in IMG/M
3300027797\|Ga0209107_10467294	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	565	Open in IMG/M
3300027808\|Ga0209354_10001105	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	11987	Open in IMG/M
3300027892\|Ga0209550_10166156	All Organisms → Viruses → Predicted Viral	1550	Open in IMG/M
3300027969\|Ga0209191_1056967	All Organisms → Viruses → Predicted Viral	1766	Open in IMG/M
3300028112\|Ga0256335_1015883	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1913	Open in IMG/M
3300028394\|Ga0304730_1152656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGB20	926	Open in IMG/M
3300031963\|Ga0315901_10407439	All Organisms → Viruses → Predicted Viral	1088	Open in IMG/M
3300031963\|Ga0315901_11170251	Not Available	523	Open in IMG/M
3300032050\|Ga0315906_10024180	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6693	Open in IMG/M
3300032116\|Ga0315903_10450251	All Organisms → Viruses → Predicted Viral	1032	Open in IMG/M
3300034082\|Ga0335020_0539837	Not Available	550	Open in IMG/M
3300034093\|Ga0335012_0051865	All Organisms → Viruses → Predicted Viral	2369	Open in IMG/M
3300034117\|Ga0335033_0210131	All Organisms → Viruses → Predicted Viral	1044	Open in IMG/M
3300034121\|Ga0335058_0107473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGB20	1632	Open in IMG/M
3300034356\|Ga0335048_0360271	Not Available	733	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.17%
Host-Associated	Host-Associated	0.83%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.35%
Terrestrial	Environmental → Terrestrial	0.83%
Plants	Host-Associated → Plants	0.83%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	86.78%
Marine	Environmental → Aquatic → Marine	11.57%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.83%
Leaf	Host-Associated → Plants → Leaf	0.83%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	36.36%
Lentic	Environmental → Aquatic → Freshwater → Lentic	34.71%
River	Environmental → Aquatic → Freshwater → River	12.40%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	8.26%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	3.31%
Coastal	Environmental → Aquatic → Marine → Coastal	2.48%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Leaf → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	35.54%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	28.93%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	12.40%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	8.26%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	3.31%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	3.31%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	2.48%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	2.48%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.83%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Leaf → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	26.45%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	14.05%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	12.40%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	9.09%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	8.26%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.96%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	4.13%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	3.31%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	3.31%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	2.48%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	2.48%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	2.48%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	2.48%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment	0.83%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.83%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.83%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.83%
Estuary	Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003394	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN	Environmental	Open in IMG/M
3300003411	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD	Environmental	Open in IMG/M
3300003429	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN	Environmental	Open in IMG/M
3300003488	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DN	Environmental	Open in IMG/M
3300003491	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD	Environmental	Open in IMG/M
3300004054	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (v2)	Environmental	Open in IMG/M
3300004112	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)	Environmental	Open in IMG/M
3300004124	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (version 2)	Environmental	Open in IMG/M
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental	Open in IMG/M
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental	Open in IMG/M
3300007545	Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3	Environmental	Open in IMG/M
3300007549	Estuarine microbial communities from the Columbia River estuary - metaG 1548B-02	Environmental	Open in IMG/M
3300007561	Estuarine microbial communities from the Columbia River estuary - metaG 1561A-3	Environmental	Open in IMG/M
3300007617	Estuarine microbial communities from the Columbia River estuary - metaG 1554B-02	Environmental	Open in IMG/M
3300008055	Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393	Host-Associated	Open in IMG/M
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental	Open in IMG/M
3300008108	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NA	Environmental	Open in IMG/M
3300008113	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA	Environmental	Open in IMG/M
3300008116	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA	Environmental	Open in IMG/M
3300008119	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA	Environmental	Open in IMG/M
3300008448	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs	Environmental	Open in IMG/M
3300009068	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG	Environmental	Open in IMG/M
3300009151	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG	Environmental	Open in IMG/M
3300009164	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG	Environmental	Open in IMG/M
3300009180	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG	Environmental	Open in IMG/M
3300009181	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG	Environmental	Open in IMG/M
3300009183	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG	Environmental	Open in IMG/M
3300010160	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG	Environmental	Open in IMG/M
3300010334	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)	Environmental	Open in IMG/M
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental	Open in IMG/M
3300010370	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNA	Environmental	Open in IMG/M
3300010374	Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S-1-Day17	Environmental	Open in IMG/M
3300010885	northern Canada Lakes Co-assembly	Environmental	Open in IMG/M
3300012758	Freshwater microbial communities from Lake Simoncouche, Canada - S_130626_E_mt (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental	Open in IMG/M
3300017774	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017778	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D	Environmental	Open in IMG/M
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental	Open in IMG/M
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental	Open in IMG/M
3300020084	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200m	Environmental	Open in IMG/M
3300020141	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1	Environmental	Open in IMG/M
3300020160	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1	Environmental	Open in IMG/M
3300020179	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m	Environmental	Open in IMG/M
3300020190	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015013 Mahale N5 surface	Environmental	Open in IMG/M
3300020196	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015031 Kigoma Deep Cast 0m	Environmental	Open in IMG/M
3300020205	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1	Environmental	Open in IMG/M
3300020221	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015036 Kigoma Deep Cast 100m	Environmental	Open in IMG/M
3300020222	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015034 Kigoma Deep Cast 250m	Environmental	Open in IMG/M
3300020560	Freshwater microbial communities from Lake Mendota, WI - 18JUN2009 deep hole epilimnion ns (SPAdes)	Environmental	Open in IMG/M
3300021093	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015023 Mahale A surface	Environmental	Open in IMG/M
3300021141	Freshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion	Environmental	Open in IMG/M
3300021336	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1073 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021424	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015009 Mahale N1 surface	Environmental	Open in IMG/M
3300021961	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D	Environmental	Open in IMG/M
3300024306	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8h	Environmental	Open in IMG/M
3300024343	Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction	Environmental	Open in IMG/M
3300024354	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepB_8d	Environmental	Open in IMG/M
3300024861	Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024867	Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepA_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300027144	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_0h	Environmental	Open in IMG/M
3300027147	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepC_8h	Environmental	Open in IMG/M
3300027150	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepB_8h	Environmental	Open in IMG/M
3300027154	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepA_8h	Environmental	Open in IMG/M
3300027229	Estuarine microbial communities from the Columbia River estuary - metaG 1549B-3 (SPAdes)	Environmental	Open in IMG/M
3300027231	Estuarine microbial communities from the Columbia River estuary - metaG 1552A-02 (SPAdes)	Environmental	Open in IMG/M
3300027241	Estuarine microbial communities from the Columbia River estuary - metaG 1553A-02 (SPAdes)	Environmental	Open in IMG/M
3300027260	Estuarine microbial communities from the Columbia River estuary - metaG 1563A-02 (SPAdes)	Environmental	Open in IMG/M
3300027299	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepB_8d	Environmental	Open in IMG/M
3300027300	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Colum_RepC_8d	Environmental	Open in IMG/M
3300027396	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_8h	Environmental	Open in IMG/M
3300027534	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepC_8d	Environmental	Open in IMG/M
3300027586	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)	Environmental	Open in IMG/M
3300027600	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepA_8h	Environmental	Open in IMG/M
3300027608	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)	Environmental	Open in IMG/M
3300027644	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN (SPAdes)	Environmental	Open in IMG/M
3300027679	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (SPAdes)	Environmental	Open in IMG/M
3300027688	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.DN (SPAdes)	Environmental	Open in IMG/M
3300027689	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (SPAdes)	Environmental	Open in IMG/M
3300027708	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027720	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011 (SPAdes)	Environmental	Open in IMG/M
3300027732	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)	Environmental	Open in IMG/M
3300027769	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)	Environmental	Open in IMG/M
3300027772	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)	Environmental	Open in IMG/M
3300027782	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027797	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)	Environmental	Open in IMG/M
3300027808	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)	Environmental	Open in IMG/M
3300027892	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)	Environmental	Open in IMG/M
3300027969	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300028112	Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300028394	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)	Environmental	Open in IMG/M
3300031963	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116	Environmental	Open in IMG/M
3300032050	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122	Environmental	Open in IMG/M
3300032116	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119	Environmental	Open in IMG/M
3300034082	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088	Environmental	Open in IMG/M
3300034093	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072	Environmental	Open in IMG/M
3300034117	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jun2014-rr0124	Environmental	Open in IMG/M
3300034121	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174	Environmental	Open in IMG/M
3300034356	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12421J11937_101393702	3300000756	Freshwater And Sediment	NRLWALYVYLKTGGLDMTWEHKVIAVVRGRAEAYDFERGLVKQLQPTLNDQYM*
JGI12421J11937_101450521	3300000756	Freshwater And Sediment	VNENRLWALYIYLKSGGLAMNWTHEIIAVVRGRKEAYAYERELVKLFEPELNDQYL*
B570J40625_1007292673	3300002835	Freshwater	NENRLWALYIYLKSGGLAMTWRHEVIAVIRGRKEAYAYERELVKLFEPELNDQYL*
JGI25908J49247_101010121	3300003277	Freshwater Lake	RKHISRARNENRAWVLYEYLKMGAMDWAWEHRVLAIIRGRKEAYAYERALVKEQVPSLNDQYL*
JGI25908J49247_101363303	3300003277	Freshwater Lake	ALYVYLKTGGLDLGWTHNILAIVRGRAEAYAYERELVKMAEPTLNDQYL*
JGI25907J50239_10657961	3300003394	Freshwater Lake	RKGSVTVAKAVKERWRKHXSXARNENRLWAXYVYLKTGGLDMTWEHRVIAIVRGRAEAYDFERGLVKELQPTLNDQYM*
JGI25911J50253_101049853	3300003411	Freshwater Lake	WRKHKSRARNENRTWALYVYLKTGGLDLGWTHNIIAIVRGRAEAYAYERELVKRAEPTLNDQYL*
JGI25911J50253_101900901	3300003411	Freshwater Lake	AKNENRLWALYIYLKSGGLAMNWTHEIIAIVRGRKEAYAYERELVKLFEPELNDQYL*
JGI25914J50564_100046191	3300003429	Freshwater Lake	LYIYLKSGGLAMNWTHEIIAVVRGRKEAYAYERELVKLFEPELNDQYL*
JGI25919J51413_10033841	3300003488	Freshwater Lake	HISRARNENRAWVLYEYLKMGAMDWAWEHRVLAIIRGRKEAYAYERALVKEQVPSLNDQYL*
JGI25924J51412_10501142	3300003491	Freshwater Lake	YVYLKTGGLDMTWEHRVIAIVRGRAEAYDFERGLVKELQPTLNDQYM*
Ga0063232_102484512	3300004054	Freshwater Lake	VLERWRKHKSRARNENRKWALYVYLKTGGLDLGWTHNILAIVRGRAEAYAYERELVKMAEPTLNDQYL*
Ga0065166_102191371	3300004112	Freshwater Lake	NENRMWALYVYLKTGGLDMTWTHTVLDVIRGRKEAYAYERELVKMIEPELNDQYL*
Ga0066178_100120951	3300004124	Freshwater Lake	NEDRKWALYVYLKTGGLDLGWTHKIITIIRGRAEAYAYERELVKQVVPELNDQYL*
Ga0068876_100390909	3300005527	Freshwater Lake	ERWRKHKSRAVNENRLWALYIYLKSGGLAMTWKHEIIAIVRGRKEAYAYERELVKLFEPELNDQYL*
Ga0068876_102635174	3300005527	Freshwater Lake	PTKAVRERWRKHISRAKNENRTWALYVYLKTGGLTMTWSHRILEIVRGRAEAYARERELVKTVRPELNDQYL*
Ga0078894_109020873	3300005662	Freshwater Lake	NENRMWALYVYLKTGGLDMTWTHTVLDVIRGRKEAYAYERELVKMMEPELNDQYL*
Ga0078894_114999102	3300005662	Freshwater Lake	WALYIYLKSGGLAMNWTHEIIAIVRGRKEAYAYERELVKLFEPELNDQYL*
Ga0078894_115484081	3300005662	Freshwater Lake	LYIYLKSGGLAMTWTHEIIAIVRGRKEAYAYERELVKLFEPELNDQYL*
Ga0102873_10774311	3300007545	Estuarine	VTRAVAERWRKHVSRAKNENRLWALYVYLKSGGLDMTWTHTVIDVIRGRAEAYATERIIVKAVEPELNDQYL*
Ga0102879_11941711	3300007549	Estuarine	RWRKHKSRARNENRLWALYIYLKSGGLDLAWHHRVIAVIRGRKEAFEYERHLVK*
Ga0102914_12693172	3300007561	Estuarine	LERWRKHKSRARNENRTWALYVYLKTGGLDLGWTHTILAIVRGRAEAYAYERSLVKELGPTLNDQYTG*
Ga0102897_12200931	3300007617	Estuarine	NENRLWALYVYLKTGGMDMGWEHRVIAVIRGRAEAYDFERGLVKALEPTLNDQYL*
Ga0108970_106980551	3300008055	Estuary	NRLWALYIYLKSGGLAMTWRHEVIAVIRGRKEAYAYERELVKLFEPELNDQYL*
Ga0114340_11453011	3300008107	Freshwater, Plankton	VLYQYLKAGALDFHWEHRVLEIVRGRKAAYAREREIVKIQKPTLNDQYL*
Ga0114341_100165733	3300008108	Freshwater, Plankton	MTKHKSRAKNENRLWALYIYLKSGGLAMNWTHEIIAIVRGRKEAYAYERELVKLFEPELNDQYL*
Ga0114346_12198502	3300008113	Freshwater, Plankton	SRARNENRLWALYIYLKTGGLDLAWTHRVITVIRGRAEAYAWEREYVKKHKPTLNDQYL*
Ga0114350_10542271	3300008116	Freshwater, Plankton	PNVDKVVAERWRKHKRRARNEHRLWALYIYLKTGGLDLAWTHRVITVIRGRAEAYAWEREYVKKHKPTLNDQYL*
Ga0114354_100024784	3300008119	Freshwater, Plankton	VTPVKAVLERWRKHKSRARNEDRKWALYVYLKTGGLDLGWTHKIITIIRGRAEAYAYERELVKQVVPELNDQYL*
Ga0114876_10570421	3300008448	Freshwater Lake	ADKVVAERWRKHRSRAVNENRLWALYIYLKSGGLDMTWRHEVIAVIRGRKEAYAYERELVKLFEPELNDQYL*
Ga0114973_102688912	3300009068	Freshwater Lake	GLTRKGSVTVAKAVKERWRKHISRARNENRLWALYVYLKTGGLDMTWEHRVIAIVRGRAEAYDFERGLVKELQPTLNDQYM*
Ga0114962_103992032	3300009151	Freshwater Lake	VTVAKAVKERWRKHISRARNENRLWALYVYLKTGGLDMTWEHRVIAIVRGRAEAYDFERGLVKELQPTLNDQYIG*
Ga0114975_100972681	3300009164	Freshwater Lake	SRARNENRLWALYIYLKSGGLDMMWEHRVITVIRGRAEAYAYERSLVKELGPSLNDQYTG
Ga0114975_102636003	3300009164	Freshwater Lake	RARNEDRKWALYVYLKSGGLDLGWTHTILAIVRGRAEAYAYERELVKSARPQLNDQYL*
Ga0114979_102305011	3300009180	Freshwater Lake	KSRARNENRMWALYVYLKTGGLDMTWTHTVLDVIRGRKEAYAYERELVKMIEPELNDQYL
Ga0114969_104190093	3300009181	Freshwater Lake	ARNENRLWALYIYLKSGGLDMTWEHTVIDIIRGRKEAYATERIIVKAVEPELNDQYL*
Ga0114974_102012461	3300009183	Freshwater Lake	KAVKERWRKHISRARNENRLWALYIYLKSGGLDMAWEHRVITVIRGRAEAYAYERSLVKELGPTLNDQYQ*
Ga0114974_102243864	3300009183	Freshwater Lake	SRARNENRLWALYIYLKSGGLDLAWHHRVIAVIRGRKEAYEYERHLVKEFQPTLNDQYL*
Ga0114974_107327861	3300009183	Freshwater Lake	ERWRKHKSRAVNENRLWALYICLKSGGLAMNWTHEIIAVIRGRKEAYAYERELVKLIKPELNDQYL*
Ga0114967_100640206	3300010160	Freshwater Lake	YVYLKTGGLDMTWEHRVIAIVRGRAEAYDFERGLVKELKPTLNDQYIG*
Ga0136644_107702242	3300010334	Freshwater Lake	KHLSRARNENRLWALYIYLKSGGLDMAWEHRVITVIRGRAEAYAYERSLVKELGPSLNDQYQ*
Ga0129333_109192772	3300010354	Freshwater To Marine Saline Gradient	NENRLWALYVYLKSGGLDLSWTHRVITVIRGRAEAYAWEREYVKAHQPALNDQYL*
Ga0129333_113857013	3300010354	Freshwater To Marine Saline Gradient	YVYLKTGGLEQTWEHRVLEIVRGRKAAYAREREIVKELAPSLNDQYL*
Ga0129336_103691773	3300010370	Freshwater To Marine Saline Gradient	LSRARNEHRAWRLYEYMRAGGLEQTWEHRVLAIIRGRAEAYAWERAVVKEQQPTLNDQYL
Ga0114986_11026392	3300010374	Deep Subsurface	YQYLKDRLDGTWTHRVLAVVRGRADAYAYERALVKKMEPTLNDQYM*
Ga0133913_130870691	3300010885	Freshwater Lake	ALYIYLKSGGLDLAWHHRVIAVIRGRKEAYEYERHLVKEFRPTLNDQYL*
Ga0138285_11058711	3300012758	Freshwater Lake	KSRARNEDRAWPLYQYLRDRLDGDWSHRVITIIRGRAEAYDYERSLVKTLQPTLNDQYIG
Ga0164293_105018742	3300013004	Freshwater	YIYLKSGGLAMTWTHEVIAVIRGRKEAYAYERELVKLFEPELNDQYL*
Ga0181358_12180681	3300017774	Freshwater Lake	RKHKSRARNEDRKWALYVYLNTGGLTMSWTHRIIEIVRGRAEAYAREREIVKTVRPQLNDQYL
Ga0181349_10413791	3300017778	Freshwater Lake	KSRARNENRKWALYVYLKTGGLDLGWTHNILAIVRGRAEAYAYERELVKMAEPTLNDQYL
Ga0181349_12714571	3300017778	Freshwater Lake	LERWRKHKSRARNEDRKWALYVYLKTGGLDLGWTHNILAIVRGRAEAYAYERELVKRAEPTLNDQYL
Ga0181359_10353616	3300019784	Freshwater Lake	NVYLKTGGLDMTWEHRVIAIVRGRAEAYDFERGLVKELQPTLNDQYM
Ga0207193_13688881	3300020048	Freshwater Lake Sediment	KWALYVYLKTGGLDLGWTHKIITIIRGRAEAYAYERELVKQAEPILNDQYL
Ga0194110_102866361	3300020084	Freshwater Lake	RLWALYVYLKTGGLELNWTHRVIAVIRGRAEAYAWEREYVKQHRPSLNDQYL
Ga0211732_11878393	3300020141	Freshwater	ADKVVAERWRKHKSRAKNENRLWALYIYLKSGGLDMTWTHTVIDIVRGRKEAYAYERELVKLFEPELNDQYL
Ga0211732_12360621	3300020141	Freshwater	KVVAERWRKHKSRAVNENRLWALYIYLKSGGLAMNWTHEIIAVIRGRKEAYAYERELVKLFEPELNDQYR
Ga0211733_104912671	3300020160	Freshwater	KGSVTVEKAVLERWRKHKSRARNENRMWALYVYLKTGGLDMTWTHTVLDVIRGRKEAYAYERELVKMIEPELNDQYL
Ga0194134_102051553	3300020179	Freshwater Lake	ENKVVAERWRKHKSRARNENRLWALYVYLKTGGLELNWTHRIIAVIRGRAEAYAWEREYVKKHQPTLNDQYL
Ga0194134_103181581	3300020179	Freshwater Lake	WALYVYLKTGGLELNWTHRVIAVIRGRAEAYAWERQYVKQHRPSLNDQYL
Ga0194118_101414346	3300020190	Freshwater Lake	ERWRKHKSRARCENRLWALYVYLKTGGLELNWTHRVIAVIRGRAEAYAWEREYVKQHRPSLNDQYL
Ga0194124_104494763	3300020196	Freshwater Lake	LERWRKHRSRARCEHRLWALYVYLKTGGLELNWTHRVIAVIRGRAEAYAWEREYVKQHRPSLNDQYL
Ga0211731_116849811	3300020205	Freshwater	TETKAVLERWRKHKSRARNENRMWALYIYLKSGGLDMAWTHTVIDVIRGRKEAYAYERELVKIMEPELNDQYL
Ga0194127_106950203	3300020221	Freshwater Lake	RKHRSRARCEHRLWALYVYLKTGGLELNWTHRVIAVIRGRRAAYAWEREYVKQHQPTLNDQYL
Ga0194125_101426218	3300020222	Freshwater Lake	RARCEHRLWALYVYLKTGGLELNWTHRVIAVIRGRAEAYAWEREYVKQHRPSLNDQYL
Ga0208852_10324741	3300020560	Freshwater	WALYVYLKTGGLDMTWTHTVIDVIRGRKEAYAYERELVKMIEPELNDQYL
Ga0194123_104552523	3300021093	Freshwater Lake	SRARCEHRLWALYVYLKTGGLELNWTHRVIAVIRGRAEAYAWEREYVKQHRPSLNDQYL
Ga0214163_10367975	3300021141	Freshwater	LKTGGLDMTWTHTVIDVIRGRKEAYAYERELVKMIEPELNDQYM
Ga0210307_12477943	3300021336	Estuarine	VAKAVKERWRKHISRARNENRLWALYIYLKSGGLDMTWTHTVIDVIRGRAEAYATERIIVKAVEPELNDQYL
Ga0194117_103682101	3300021424	Freshwater Lake	KKHKSRARCEHRLWALYVYLKTGGLDLAWTHRIIAVIRGRRAAYAWEREYVKQHQPTLNDQYL
Ga0194117_104033233	3300021424	Freshwater Lake	ARCENRLWALYVYLKTGGLELNWTHRVIAVIRGRAEAYAWEREYVKQHRPSLNDQYL
Ga0222714_102469945	3300021961	Estuarine Water	KSRAVNENRLWALYIYLKSGGLAMNWTHEIIAIVRGRKEAYAYERELVKLFEPELNDQYL
Ga0255148_10381741	3300024306	Freshwater	STVNKSVLERWRKHKSRARNENRLWALYVYLKTGGLDLAWEHRVLEIVRGRREAYAREREIVKALAPSLNDQYL
Ga0244777_107169911	3300024343	Estuarine	IYLKSGGLDMTWEHKVITVIRGRAEAYAYERSLVKELGPSLNDQYTG
Ga0255171_10004381	3300024354	Freshwater	ENRLWALYVYLKTGGLDMTWEHKIIAVIRGRAEAYDFERGLVKELRPSLNDQYL
Ga0256312_10289704	3300024861	Freshwater	NRLWALYIYLKSGGLAMTWKHEIIAIVRGRKEAYAYERELVKLFEPELNDQYL
Ga0255267_11447891	3300024867	Freshwater	ENYIGLTRKGSTTVNRAVKERWRKHLSRARNENRLWALYVYLKTGGLDMTWEHKIIAVIRGRAEAYDFERGLVKELRPSLNDQYL
Ga0255102_10587713	3300027144	Freshwater	LYVYLKTGGLDLGWTHNIIAIVRGRAEAYAYERELVKMAEPTLNDQYL
Ga0255113_10289295	3300027147	Freshwater	LWALYIYLKSGGLAMNWTHEIIAVVRGRKEAYAYERELVKLFEPELNDQYL
Ga0255112_100722410	3300027150	Freshwater	LYIYLKSGGLAMNWTHEIIAVVRGRKEAYAYERELVKLFEPELNDQYL
Ga0255111_10112946	3300027154	Freshwater	DKVVAERWRKHKSRAVNENRLWALYIYLKSGGLAMTWKHEIIAIVRGRKEAYAYERELVKLFEPELNDQYL
Ga0255111_10710131	3300027154	Freshwater	KAVLERWRKHKSRARNEDRKWALYVYLKTGGLELGWTHKIITIIRGRAEAYAYERELVKQVVPELNDQYL
Ga0208442_10490681	3300027229	Estuarine	RAVAERWRKHVSRAKNENRLWALYVYLKSGGLDMTWTHTVIDVIRGRAEAYATERIIVKAVEPELNDQYL
Ga0208172_10601132	3300027231	Estuarine	KGDVTVAKAVKERWRKHISRARNENRLWALYIYLKSGGLDMTWTHTVIDVIRGRAEAYATERIIVKAVEPELNDQYL
Ga0208805_10800972	3300027241	Estuarine	VSRAKNENRLWALYVYLKSGGLDMTWTHTVIDVIRGRAEAYATERIIVKAVEPELNDQYL
Ga0208027_10532321	3300027260	Estuarine	QWALYVYLKSGGLDMTWTHTVIDVIRGRAEAYATERIIVKAVEPELNDQYL
Ga0255124_100177217	3300027299	Freshwater	LYIYLKSGGLAMTWKHEIIAIVRGRKEAYAYERELVKLFEPELNDQYL
Ga0255140_100681610	3300027300	Freshwater	LYIYLKSGGLDMTWRHEVIAVIRGRKEAYAYERELVKLFEPELNDQYL
Ga0255146_11130102	3300027396	Freshwater	YVYLKTGGLDLAWEHRVLEIVRGRREAYAREREIVKALAPSLNDQYL
Ga0255125_10703581	3300027534	Freshwater	RKHRSRAVNENRLWALYIYLKSGGLDMTWRHEVIAVIRGRKEAYAYERELVKLFEPELNDQYL
Ga0208966_10425543	3300027586	Freshwater Lentic	TVAKAVKERWRKHISRARNENRLWALYVYLKTGGLDMTWEHKVIAVVRGRAEAYDFERGLVKELQPTLNDQYM
Ga0255117_10925771	3300027600	Freshwater	HKSRAKNENRLWALYIYLKSGGLAMNWTHEIIAIVRGRKEAYAYERELVKLFEPELNDQY
Ga0208974_10199457	3300027608	Freshwater Lentic	VVKERWRKHISRARNENRAWVLYEYLKMGAMDWAWEHRVLAIIRGRKEAYAYERALVKEQVPSLNDQYL
Ga0208974_11136501	3300027608	Freshwater Lentic	ERWRKHRSRAVNENRLWALYIYLKSGGLAMTWQHEVIAVIRGRKEAYAYERELVKLFEPELNDQYL
Ga0209356_10001101	3300027644	Freshwater Lake	ERWRKHRSRAVNENRLWALYIYLKSGGLAMTWRHEVIAVIRGRAEAYALERELVKLFEPELNDQYL
Ga0209356_10772813	3300027644	Freshwater Lake	VLERWRKHKSRARNENRKWALYVYLKTGGLDLGWTHNILAIVRGRAEAYAYERELVKRAEPTLNDQYL
Ga0209769_12551751	3300027679	Freshwater Lake	WALYIYLKSGGLAMTWSHEVIAVIRGRKEAYAYERELVKLFEPELNDQYR
Ga0209553_11973611	3300027688	Freshwater Lake	YVYLKTGGLDLGWTHNILAIVRGRAEAYAYERELVKMAEPTLNDQYL
Ga0209551_11136391	3300027689	Freshwater Lake	NRLWALYIYLKSGGLAMTWRHEVIAVIRGRKEAYAYERELVKLFEPELNDQYL
Ga0209551_12753481	3300027689	Freshwater Lake	ARNENRLWALYIYLKSGGLAMTWTHTVIDIVRGRKEAYAYERELVKLFEPELNDQYL
Ga0209188_10357776	3300027708	Freshwater Lake	SRARNEQREWVLYEYLRALGLALAWEHKIICIIRGRKEAYAYERELVKARQPTLNDQYCG
Ga0209617_103043422	3300027720	Freshwater And Sediment	VTPVKAVLERWRKHKSRARNENRKWALYVYLNTGGLTMSWTHRIIEIVRGRAEAYAREREIVKAARPQLNDQYL
Ga0209442_10106221	3300027732	Freshwater Lake	VLERWRKHKSRARNEDRKWALYVYLKTGGLDLGWTHKIITVIRGRAEAYAYERELVKQVVPELNDQYL
Ga0209442_11587031	3300027732	Freshwater Lake	WRKHKSRARNENRLWALYIYLKSGGLAMTWTHTVIDIVRGRKEAYAYERELVKLFEPELNDQYL
Ga0209770_101819031	3300027769	Freshwater Lake	VAERWRKHKSRAVNENRMWNLYVYLKSGGLAMNWTHEIIAIVRGRAEAYAYERELVKLFEPELNDQYL
Ga0209768_100426521	3300027772	Freshwater Lake	TRKGSVTVAKAVKERWRKHISRARNENRLWALYVYLKTGGLDMTWEHRVIAIVRGRAEAYDFERGLVKELQPTLNDQYM
Ga0209500_103804072	3300027782	Freshwater Lake	WALYIYLKSGGLDMMWEHKVITVIRGRAEAYAYERSLVKELGPTLNDQYQ
Ga0209107_104672941	3300027797	Freshwater And Sediment	VNENRLWALYIYLKSGGLAMTWQHEVIAVIRGRKEAYAYERELVKLFEPELNDQYL
Ga0209354_1000110538	3300027808	Freshwater Lake	KAVLERWRKHKSRARNEDRKWALYVYLKTGGLDLGWTHKIITVIRGRAEAYAYERELVKQVVPELNDQYL
Ga0209550_101661561	3300027892	Freshwater Lake	KGSVTVNKAVLERWRKHKSRARNENRMWALYVYLKTGGLDMTWTHTVIDVIRGRKEAYAYERELVKMIEPELNDQYL
Ga0209191_10569675	3300027969	Freshwater Lake	RWRKHVSRARNENRLWALYIYLKSGGLDMMWEHRVITVIRGRAEAYAYERSLVKELGPSLNDQYTG
Ga0256335_10158835	3300028112	Freshwater	AVKERWRKHLSRARNENRLWALYVYLKTGGLDMTWEHKIIAVIRGRAEAYDFERGLVKELRPSLNDQYL
Ga0304730_11526562	3300028394	Freshwater Lake	NENRLWALYVYLKTGGLDMTWEHRVIAIVRGRAEAYDFERGLVKELKPTLNDQYIG
Ga0315901_104074394	3300031963	Freshwater	PAKAVRERWRKHISRAKNENRTWALYVYLKTGGLTMTWTHRILEIVRGRAEAYARERELVKTVRPELNDQYL
Ga0315901_111702513	3300031963	Freshwater	RWALYVYLKTGGLTMQWSHRILEVVRGRAEAYARERELVKAVQPQLNDQYL
Ga0315906_1002418018	3300032050	Freshwater	KGTVTPVKAVLERWRKHKSRARNEDRKWALYVYLKTGGLDLGWTHKIITIIRGRAEAYAYERELVKQVVPELNDQYL
Ga0315903_104502514	3300032116	Freshwater	NRTWALYVYLKTGGLTMTWTHRILEIVRGRAEAYARERELVKTVRPELNDQYL
Ga0335020_0539837_333_548	3300034082	Freshwater	DKVVAERWRKHKSRAKNENRLWALYIYLKSGGLDMTWTHTVIDIVRGRKEAYAYERELVKLFEPELNDQYL
Ga0335012_0051865_2195_2368	3300034093	Freshwater	ARNENRLWALYIYLKSGGLDLAWHHRVIAVIRGRKEAYEYERHLVKEFRPTLNDQYL
Ga0335033_0210131_805_1023	3300034117	Freshwater	VTKVVAERWRKHKSRARNENRLWALYIYLKTGGLELAWEHRVLAIIRGRKEAYEYERSLVKELAPTLNDQYL
Ga0335058_0107473_1458_1631	3300034121	Freshwater	ARNENRLWALYIYLKTGGLELAWEHRVLAIIRGRKEAYEYERSLVKELAPTLNDQYL
Ga0335048_0360271_511_666	3300034356	Freshwater	MWALYVYLKTGGLDMTWTHTVLDVIRGRKEAYAYERELVKMIEPELNDQYL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071983

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences