NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F071795

Metagenome / Metatranscriptome Family F071795

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F071795
Family Type Metagenome / Metatranscriptome
Number of Sequences 122
Average Sequence Length 59 residues
Representative Sequence MLVQPQQAATVCELDLVLHTIGSSKRAQTLDPNQRPENSHEPLNLTLDLEYAHVSS
Number of Associated Samples 106
Number of Associated Scaffolds 122

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 12.30 %
% of genes near scaffold ends (potentially truncated) 67.21 %
% of genes from short scaffolds (< 2000 bps) 95.08 %
Associated GOLD sequencing projects 99
AlphaFold2 3D model prediction Yes
3D model pTM-score0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (53.279 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(9.016 % of family members)
Environment Ontology (ENVO) Unclassified
(36.066 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(57.377 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.15
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 122 Family Scaffolds
PF02371Transposase_20 44.26
PF04138GtrA 2.46
PF02705K_trans 1.64
PF01527HTH_Tnp_1 1.64
PF13358DDE_3 1.64
PF07386DUF1499 0.82
PF13480Acetyltransf_6 0.82
PF03459TOBE 0.82
PF04392ABC_sub_bind 0.82
PF01734Patatin 0.82
PF08281Sigma70_r4_2 0.82
PF00211Guanylate_cyc 0.82
PF13683rve_3 0.82
PF14280DUF4365 0.82

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 122 Family Scaffolds
COG3547TransposaseMobilome: prophages, transposons [X] 44.26
COG3158K+ uptake protein KupInorganic ion transport and metabolism [P] 1.64
COG1752Predicted acylesterase/phospholipase RssA, containd patatin domainGeneral function prediction only [R] 0.82
COG2114Adenylate cyclase, class 3Signal transduction mechanisms [T] 0.82
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 0.82
COG3621Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotRGeneral function prediction only [R] 0.82
COG4446Uncharacterized conserved protein, DUF1499 familyFunction unknown [S] 0.82
COG4667Predicted phospholipase, patatin/cPLA2 familyLipid transport and metabolism [I] 0.82


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms53.28 %
UnclassifiedrootN/A46.72 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001305|C688J14111_10111140All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria836Open in IMG/M
3300001369|JGI12701J14581_1006367All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria773Open in IMG/M
3300001978|JGI24747J21853_1014663All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria817Open in IMG/M
3300001979|JGI24740J21852_10186705All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales514Open in IMG/M
3300001991|JGI24743J22301_10009186All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1748Open in IMG/M
3300002070|JGI24750J21931_1074377All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium giardinii558Open in IMG/M
3300002073|JGI24745J21846_1052257All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria520Open in IMG/M
3300002568|C688J35102_117921396Not Available515Open in IMG/M
3300002568|C688J35102_118470016Not Available562Open in IMG/M
3300002568|C688J35102_120459107All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. GJ211086Open in IMG/M
3300004081|Ga0063454_100578793Not Available814Open in IMG/M
3300004643|Ga0062591_100896770All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium tropiciagri831Open in IMG/M
3300005290|Ga0065712_10394523All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria699Open in IMG/M
3300005340|Ga0070689_100240240All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1492Open in IMG/M
3300005344|Ga0070661_100684309All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria835Open in IMG/M
3300005347|Ga0070668_102140938Not Available517Open in IMG/M
3300005355|Ga0070671_101219056All Organisms → cellular organisms → Bacteria → Proteobacteria662Open in IMG/M
3300005356|Ga0070674_100258609Not Available1371Open in IMG/M
3300005364|Ga0070673_100253596Not Available1534Open in IMG/M
3300005436|Ga0070713_100360512Not Available1351Open in IMG/M
3300005535|Ga0070684_100435805Not Available1210Open in IMG/M
3300005535|Ga0070684_101795906All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria578Open in IMG/M
3300005535|Ga0070684_101875899All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria566Open in IMG/M
3300005535|Ga0070684_102332320Not Available504Open in IMG/M
3300005539|Ga0068853_100708341Not Available961Open in IMG/M
3300005544|Ga0070686_101647247Not Available544Open in IMG/M
3300005548|Ga0070665_101314786All Organisms → cellular organisms → Bacteria → Proteobacteria733Open in IMG/M
3300005549|Ga0070704_102159722Not Available518Open in IMG/M
3300005564|Ga0070664_101079892Not Available755Open in IMG/M
3300005577|Ga0068857_102296826All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales530Open in IMG/M
3300005586|Ga0066691_10813773Not Available550Open in IMG/M
3300005591|Ga0070761_10261634All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1035Open in IMG/M
3300005614|Ga0068856_100846826All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria934Open in IMG/M
3300005618|Ga0068864_100900247All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria874Open in IMG/M
3300005618|Ga0068864_100982772All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria836Open in IMG/M
3300005718|Ga0068866_11086057All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium giardinii572Open in IMG/M
3300005841|Ga0068863_100211334Not Available1868Open in IMG/M
3300005841|Ga0068863_100474511All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Paracoccus → Paracoccus denitrificans1229Open in IMG/M
3300005841|Ga0068863_102411703All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria536Open in IMG/M
3300005842|Ga0068858_101421479All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Paracoccus → Paracoccus denitrificans683Open in IMG/M
3300005842|Ga0068858_101635955Not Available636Open in IMG/M
3300006050|Ga0075028_100608300All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria650Open in IMG/M
3300006854|Ga0075425_101020260All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria944Open in IMG/M
3300006903|Ga0075426_10456418Not Available947Open in IMG/M
3300009094|Ga0111539_12331052Not Available621Open in IMG/M
3300009098|Ga0105245_11009505All Organisms → cellular organisms → Bacteria877Open in IMG/M
3300009101|Ga0105247_11313276Not Available581Open in IMG/M
3300009156|Ga0111538_12122698All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria706Open in IMG/M
3300009174|Ga0105241_11421376All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria665Open in IMG/M
3300009545|Ga0105237_10376786All Organisms → cellular organisms → Bacteria → Proteobacteria1424Open in IMG/M
3300009551|Ga0105238_10338134All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1493Open in IMG/M
3300009792|Ga0126374_11705588Not Available524Open in IMG/M
3300010048|Ga0126373_10269851Not Available1683Open in IMG/M
3300010048|Ga0126373_11633508Not Available709Open in IMG/M
3300010375|Ga0105239_11163161Not Available889Open in IMG/M
3300010397|Ga0134124_11688087Not Available665Open in IMG/M
3300010398|Ga0126383_12697752Not Available580Open in IMG/M
3300010401|Ga0134121_12088337All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria601Open in IMG/M
3300010403|Ga0134123_11950455Not Available644Open in IMG/M
3300011332|Ga0126317_10570819All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium qingshengii1252Open in IMG/M
3300012212|Ga0150985_106042331All Organisms → cellular organisms → Bacteria → Proteobacteria1641Open in IMG/M
3300012212|Ga0150985_117390062All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria646Open in IMG/M
3300012898|Ga0157293_10299340Not Available531Open in IMG/M
3300012903|Ga0157289_10371403Not Available529Open in IMG/M
3300012906|Ga0157295_10183310All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria654Open in IMG/M
3300012913|Ga0157298_10092425All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa palsarum802Open in IMG/M
3300012951|Ga0164300_10418043All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales742Open in IMG/M
3300012957|Ga0164303_11315963Not Available535Open in IMG/M
3300012984|Ga0164309_10942624All Organisms → cellular organisms → Bacteria707Open in IMG/M
3300012986|Ga0164304_10870246Not Available702Open in IMG/M
3300012989|Ga0164305_10125238Not Available1700Open in IMG/M
3300013297|Ga0157378_12034854All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales624Open in IMG/M
3300013308|Ga0157375_10805758Not Available1088Open in IMG/M
3300014325|Ga0163163_10981857All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria908Open in IMG/M
3300014968|Ga0157379_12668183Not Available501Open in IMG/M
3300015371|Ga0132258_10194118All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria4920Open in IMG/M
3300015371|Ga0132258_11089335All Organisms → cellular organisms → Bacteria → Proteobacteria2020Open in IMG/M
3300015372|Ga0132256_101494439All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria786Open in IMG/M
3300015372|Ga0132256_103140816Not Available555Open in IMG/M
3300016270|Ga0182036_11212764All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria628Open in IMG/M
3300017792|Ga0163161_11225871All Organisms → cellular organisms → Bacteria650Open in IMG/M
3300017792|Ga0163161_11965531Not Available520Open in IMG/M
3300017792|Ga0163161_12086007Not Available504Open in IMG/M
3300017955|Ga0187817_11086525Not Available513Open in IMG/M
3300017975|Ga0187782_10910028All Organisms → cellular organisms → Bacteria → Proteobacteria682Open in IMG/M
3300018481|Ga0190271_11958484All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria696Open in IMG/M
3300020582|Ga0210395_10091344All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2247Open in IMG/M
3300020583|Ga0210401_10158807All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2111Open in IMG/M
3300021171|Ga0210405_10309872All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1247Open in IMG/M
3300021180|Ga0210396_11447812Not Available566Open in IMG/M
3300021184|Ga0196959_10009809Not Available1571Open in IMG/M
3300021401|Ga0210393_10205816All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1591Open in IMG/M
3300021433|Ga0210391_10200274All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1570Open in IMG/M
3300021560|Ga0126371_10143730Not Available2440Open in IMG/M
3300022898|Ga0247745_1006570Not Available1516Open in IMG/M
3300023077|Ga0247802_1021034Not Available919Open in IMG/M
3300024179|Ga0247695_1018692Not Available973Open in IMG/M
3300024317|Ga0247660_1088806Not Available530Open in IMG/M
3300025321|Ga0207656_10018708All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2730Open in IMG/M
3300025735|Ga0207713_1066328Not Available1351Open in IMG/M
3300025900|Ga0207710_10262572Not Available866Open in IMG/M
3300025931|Ga0207644_10571235Not Available937Open in IMG/M
3300025932|Ga0207690_11157841All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria645Open in IMG/M
3300025934|Ga0207686_10314997All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1167Open in IMG/M
3300025935|Ga0207709_11425227All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium giardinii574Open in IMG/M
3300025936|Ga0207670_11678717Not Available540Open in IMG/M
3300025944|Ga0207661_10756422Not Available894Open in IMG/M
3300025945|Ga0207679_10283280Not Available1422Open in IMG/M
3300026035|Ga0207703_11708243All Organisms → cellular organisms → Bacteria → Proteobacteria605Open in IMG/M
3300026035|Ga0207703_11977573All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium giardinii559Open in IMG/M
3300026075|Ga0207708_11353932All Organisms → cellular organisms → Bacteria → Proteobacteria624Open in IMG/M
3300026088|Ga0207641_10236625All Organisms → cellular organisms → Bacteria1700Open in IMG/M
3300028744|Ga0307318_10377722Not Available501Open in IMG/M
3300031681|Ga0318572_10965128Not Available506Open in IMG/M
3300031744|Ga0306918_10504964Not Available947Open in IMG/M
3300031854|Ga0310904_10072467Not Available1803Open in IMG/M
3300031858|Ga0310892_11331762Not Available515Open in IMG/M
3300031954|Ga0306926_11552340Not Available762Open in IMG/M
3300032076|Ga0306924_10667323All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1170Open in IMG/M
3300032205|Ga0307472_102083269Not Available570Open in IMG/M
3300032261|Ga0306920_101576353All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria935Open in IMG/M
3300034819|Ga0373958_0122393All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium giardinii630Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil9.02%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere8.20%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil7.38%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.10%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.10%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil4.10%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere4.10%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere4.10%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere4.10%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere3.28%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere3.28%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere3.28%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere3.28%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.46%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.46%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere2.46%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.46%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.46%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.46%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.64%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.64%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.64%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere1.64%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.64%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere1.64%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.82%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil0.82%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.82%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.82%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.82%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.82%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.82%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.82%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.82%
SoilEnvironmental → Terrestrial → Soil → Sand → Desert → Soil0.82%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.82%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.82%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.82%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.82%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.82%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.82%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001305Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300001369Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1EnvironmentalOpen in IMG/M
3300001978Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6Host-AssociatedOpen in IMG/M
3300001979Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6Host-AssociatedOpen in IMG/M
3300001991Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2Host-AssociatedOpen in IMG/M
3300002070Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4Host-AssociatedOpen in IMG/M
3300002073Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4Host-AssociatedOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005290Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1Host-AssociatedOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005344Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaGHost-AssociatedOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005539Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2Host-AssociatedOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005718Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011332Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012898Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1EnvironmentalOpen in IMG/M
3300012903Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1EnvironmentalOpen in IMG/M
3300012906Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1EnvironmentalOpen in IMG/M
3300012913Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021184Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20EnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022898Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5EnvironmentalOpen in IMG/M
3300023077Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S076-202R-6EnvironmentalOpen in IMG/M
3300024179Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK36EnvironmentalOpen in IMG/M
3300024317Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK01EnvironmentalOpen in IMG/M
3300025321Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025735Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025900Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028744Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367EnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031854Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300034819Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1Host-AssociatedOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
C688J14111_1011114013300001305SoilMLVQPQQAATVCELDLVLHTIGSSKRAQTLDPNQRPENSHEPLNLTLDLEYAHVSS
JGI12701J14581_100636713300001369Forest SoilMLVQPQQAATVCELDLVQRAIRSCKRAQASDPKQRPENCSEPLNLTLDFKHAHVSGH
JGI24747J21853_101466313300001978Corn, Switchgrass And Miscanthus RhizosphereMLVQPQQAATVCEFDLVQHTIRSSKRAQTLDPNPQPGSSHEPLDLTLDLEYAHVSD
JGI24740J21852_1018670523300001979Corn RhizosphereMLVQPQQAATVCEFDLVQHTIRSSKRAQTLDPNPQPGSSHEPLDLTLDLEYAHVNDRSRSPAAGAW*
JGI24743J22301_1000918613300001991Corn, Switchgrass And Miscanthus RhizosphereMLVQPQQAATVCEFDLVQHTIRSSKRAQTLDPNPQPGSSHEPLDLTLDLEYAHVSDHRGV
JGI24750J21931_107437713300002070Corn, Switchgrass And Miscanthus RhizosphereMLVQPQQAATVCEFDLVQHTIRSSKRAQTLDPNPQPGSSHEPLDLTLDLEYAHVS
JGI24745J21846_105225713300002073Corn, Switchgrass And Miscanthus RhizosphereMLVQPQQAATVCEFDLVQHTIRSSKRAQTLDPNPQPGSSHEPLDLTLDLEYAHVNDRFDPLLQVLGD
C688J35102_11792139613300002568SoilMLVQPQQAATVCELDLVQHVIRSRERAQTLDPELTAGELAHEPLNLTLDLEDAHVN*
C688J35102_11847001623300002568SoilGMLVQPQQAATVCEFDPVPHTIGSLERAQILDPNPRPENSHEPLDLTLDLEHAHVSDRSRSPAAGVW*
C688J35102_12045910723300002568SoilMLVQPQQAATVCELDLVQHAIIMERAQTLDPNQPPENSHAPNLTLDLEHADVSGRSRSSS
Ga0063454_10057879313300004081SoilGMLVQPQQAATVCELDLVQHAIIMERAQTLDPNQPPENSHEPLLTLDLEHADVSGRSRSSS*
Ga0062591_10089677013300004643SoilQPQQAATVCELDLVQHVIRSRERAQTLDPELTAGELAHEPLNLTLDLEDAHVN*
Ga0065712_1039452313300005290Miscanthus RhizosphereMLVQPQQAATVCEFDLVQHTIRSSKRAQTLDPNPQPGSSHEPLKLTLDLEHAHVMVALDPLLQVLGDVMQ
Ga0070689_10024024033300005340Switchgrass RhizosphereMLVQPQQAATVCELDLVQHVIRSRERAQTLDPKLTAGELAHEPLNLTLDLEDAHVN*
Ga0070661_10068430923300005344Corn RhizosphereMLVQPQQAATVCELDLVQHVIRSRERAQTLDPELTAGELAHEPLNLTLDLE
Ga0070668_10214093823300005347Switchgrass RhizosphereMLVQPQQAATVCELDLVPHTIGSSKRAQTLDPNQPPENSHEPLNLTLD
Ga0070671_10121905613300005355Switchgrass RhizosphereQQAATVCELDLVQHVIRSRERAQTLDPELTAGELAHEPLNLTLDLEDAHVN*
Ga0070674_10025860913300005356Miscanthus RhizosphereMLVQPQQAATVCEFDPVQHVIGSLERAQTLDPNPRPESSHEPLNLTLDLEHAM*
Ga0070673_10025359613300005364Switchgrass RhizosphereMLVQPQQAATVCEFDPVPHVIGSLERAQTLDPNPRPESSHEPLNLTLDLEHAHVMVALDPLLQVLGDVMQRFSR*
Ga0070713_10036051213300005436Corn, Switchgrass And Miscanthus RhizosphereMLVQPQQAATVCEFDPVPHTIGSLERAQTLDPNPRPENSHGPLNLTLDLKHAHVKIALDPLLQVLGDVMER
Ga0070684_10043580523300005535Corn RhizosphereMLVQPQQAATVCELDLVPHTIGSSKRAQTLDPNQPPENSHEPLNLTLDLEYAHVSGRSRNAPRGSILSPKLH*
Ga0070684_10179590623300005535Corn RhizosphereMLVQPQQAATVCEFDLVPHTIGSLERAQTLDPNPQPGSSHEPLDLTLDLEYAHVSDRSQCPAAGAW*
Ga0070684_10187589923300005535Corn RhizosphereMLVQPQQAATVCELDLVQHVIRSRERAQTLDPELTAGELAHEPLNLTL
Ga0070684_10233232013300005535Corn RhizosphereMLVQPQQAATVCELDPVQHTIGSSKRAQTLDPNQPPENSHEPLNLTLDL
Ga0068853_10070834123300005539Corn RhizosphereMLVQPQQAATVCELDPVQHTIGSSERAQTLDPNQRPENSHEPLNLTLDLEYAHVSGHSDWS*
Ga0070686_10164724713300005544Switchgrass RhizosphereMLVQPQQAATVSELDLVQHVIRSRERAQTLDPELTAGELAHEPLNLTLDLEDAHVN*
Ga0070665_10131478623300005548Switchgrass RhizosphereMLVQPQQAATVCELDLVPHTIGSSKRAQTLDPNQPPENSHEPLKLTLDLEYAHVSGHPIDTGK*
Ga0070704_10215972213300005549Corn, Switchgrass And Miscanthus RhizosphereMLVQPQQAATVCELDLVQHAIRSWKRAQTLDSKQRPETAYEPLNLTLDLEYAHVSGLSLSMIRRRRLLSQ
Ga0070664_10107989223300005564Corn RhizosphereMLVQPQQAATVCELDLVQHVIRSRERAQTLDPELTAGELAHEPLNLTLDLEHAHVN*
Ga0068857_10229682623300005577Corn RhizosphereMLVQPQQAATVCELDLVPHTIGSSKRAQTLDPNQPPENSHEPLKLTLDLEYAHVSGHQLRENRAAAALTIL*
Ga0066691_1081377313300005586SoilMLVQPQQAATVCELDLVQHAIGSRKRAQTLDPKQRPENCHEPLNLTLDCGHAYVRGHSLLQTLAFARA*
Ga0070761_1026163413300005591SoilMLVQPQQAATVCELDLVAHDIGSSKRAQTLDPNQPPETAHEPLNLTLDLEHAHVSSHSSVCDQIASWTT*
Ga0068856_10084682623300005614Corn RhizosphereMLVQPQQAATVCELDPVQHTIGSSKRAQTLDPNQPPENSHEPLNLTPDLEHAHVGRHSVGVARQYCGQLGK
Ga0068864_10090024733300005618Switchgrass RhizosphereCGMLVQPQQAATVCELDLVQHVIRSRERAQTLDPELTAGELAHEPLNLTLDLEDAHVN*
Ga0068864_10098277223300005618Switchgrass RhizosphereMLVQPQQAATVCELDPVQHTIGSLERAQTLDPNPQPGSSHEPLDLTLDLEY
Ga0068866_1108605723300005718Miscanthus RhizosphereMLVQPQQAATVCEFDPVQHVIGSLERAQTLDPNPRPESSHEPLNLTLDLEHAHV
Ga0068863_10021133423300005841Switchgrass RhizosphereMLVQPQQAATVCELDLVQHVIRSRERAQTLDPKLTAGELAHEPLNLTLDLEHAHVN*
Ga0068863_10047451133300005841Switchgrass RhizosphereMLVQPQQAATVCELDPVQHTIGSSKRAQTLDPNQPPENSHEPLNLTP*
Ga0068863_10241170313300005841Switchgrass RhizosphereMLVQPQQAATVCELDLVLHTIGSSKRAQTLDPNQRPENSHEPLNLTLDPEYAHVSSHS*
Ga0068858_10142147923300005842Switchgrass RhizosphereMLVQPQQAATVCEFDLVQHTIRSSKRAQTLDPNPQPGSSHEPLDLTLDLEYAHV
Ga0068858_10163595513300005842Switchgrass RhizosphereMLVQPQQAATVCEFDLVQHVIRSRERAQTLDPKLTAGELAHEPLNLTLDLEHAHVN*
Ga0075028_10060830023300006050WatershedsMLVQPQQTATVCELDLVQHDIGSWKRAQTLDPNQRPEDCHEPLNLTLDYGHAHVNGHSLTLP*
Ga0075425_10102026023300006854Populus RhizosphereMLVQPQQAATVCEFDLVQHTIRSSKRAQTLDPNPQPGSSHEPLDLTLDLEYAHVN
Ga0075426_1045641813300006903Populus RhizosphereMLVQPQQAATVCEFDPVPHTIGSLERAQTLDPNPRPESSHEPLDLTLDLEQPM*
Ga0111539_1233105213300009094Populus RhizosphereTVCELVPVQHVIGSLERAHTLDSNQPPENSHEPLNLTIDLEYAHVSGHFIE*
Ga0105245_1100950523300009098Miscanthus RhizosphereMLVRPQQAATVCELDLVQHTIVSSKRAQTLDPNQPPENSHEPLNLTLDLEYAPVNGRSRRDCRTAEVKP*
Ga0105247_1131327613300009101Switchgrass RhizosphereMLVQPQQAATVCEFDPVQHTIGSLERAQTLDPNPRPGSSHEPLNLTLDLEHAHVNGRS
Ga0111538_1212269813300009156Populus RhizosphereMLVQPQQAATVCEFDPVRHVIGSLERAQTLDPNPRPESSHEPLNLTLDLEHAHVNGR
Ga0105241_1142137623300009174Corn RhizosphereMLVQPQPAVTVCEFDLVPHTIRSSKRPQTLDPNPPAGSSHEPLDLTLDRKHAVRAAGWVVSAAWL
Ga0105237_1037678633300009545Corn RhizosphereMLVQPQQAATVSELDLVQHVIRSRERAQTLDPELTAGELAHEPLNLTLDLEHAHVN*
Ga0105238_1033813423300009551Corn RhizosphereMLVQPQQAATVCEFDLVQHTIRSSKRAQTLDPNPQPGSSHEPLDLTLDLEYAHVSDR*
Ga0126374_1170558813300009792Tropical Forest SoilMLVQPQQAATVCELDLMQHVIRSRERAQTLNPVLTAGELAHEPLNLTLDLEH
Ga0126373_1026985113300010048Tropical Forest SoilMLVQPQQQAATVCELDLMQHVIRSRERAQTLDPELTAGELAHEPLNLTLDLEHAHVN*
Ga0126373_1163350813300010048Tropical Forest SoilMLVQPQQAATVCELDMVQRVIRSRKRAQTLDPEFTAGELAHEPLNLTLDLEHAHVN*
Ga0105239_1116316123300010375Corn RhizosphereMLVQPQQAVTVCEFDLVQHVIRSRERAQTLDPELTAGELAHEPLNLTLDLEDAHVN*
Ga0134124_1168808713300010397Terrestrial SoilAPPAERGMLVQPQQAATVCELDLVQHVIRSRERAQTLDPELTAGELAHEPLNLTLDLEDAHVN*
Ga0126383_1269775213300010398Tropical Forest SoilAATVCELDLVQHAIRSWKRAQTLDPNQRPENCHDPVNLTLDFEHAHVSRHSSKSQAAS*
Ga0134121_1208833713300010401Terrestrial SoilPPAECGMLVQPQQAATVCELDLVPHTIGSSKRAQTLDPNQPPENSHEPLNLTP*
Ga0134123_1195045513300010403Terrestrial SoilMLVQPQQAATVCEFDPVPHVIGSLERAQTLDPNPRPESSHEPLNLTLDLEHAHVNDRSRSLAAGA*
Ga0126317_1057081913300011332SoilMLVQPQQASTVCELDPVQHTIGSSKRAQTLDSNQPPENSYDPLNLTLDL
Ga0150985_10604233113300012212Avena Fatua RhizosphereECGMLVQPQPAATVCEFDLVPHTIGSLKRAQTLDPNPQPGSSHEPLDLTLDLEHAHVSDRSRSPVVGTC*
Ga0150985_11739006223300012212Avena Fatua RhizosphereMLVQPLQAATVCELDLVQHAIRSWKRAQTLDPRQPPDNCHEPLNRTLDGEHAHVS
Ga0157293_1029934013300012898SoilMLVQPQQAATVCEFDLVQHTIRSSKRAQTLDPNPQPGSSHEPLDLTL
Ga0157289_1037140323300012903SoilMLVQPQQAATVCELDLVPHTIGSSKRAQTLDPNQPPENSHEPLNLTLDLEYAHVSGALPPLTRRV*
Ga0157295_1018331013300012906SoilMLVQPQQAATVCELDLVLHTIGSSKRAQTLDPNQPPENSHEPLNLTLDLKHAHVSG
Ga0157298_1009242513300012913SoilMLVQPQQAATVCELDPVPHTIGSSKRAQTLDPNQPPENSHEPLNLTLDLEYAHVSGALPPLTRRV*
Ga0164300_1041804323300012951SoilMLVQPQQAATVCELDPVPHTIGSLERAQTLDPNQPPENSHETLNQTLDLEYAHVSRYLSRNGTGLDARRR*
Ga0164303_1131596313300012957SoilMLVQPQQAATVCEFDPVPHTIGSLERAQSLDPNQPPENSHETLNQTLDLEYAHVSRHSRYGTG
Ga0164309_1094262413300012984SoilMLVQPQQAATVCELDMVPHAIGSSKRAQSLDPNQPPENSHEPLNLTLDLEYAHVSGRSQRDCRTAEVKP*
Ga0164304_1087024613300012986SoilMLVQPQQAATVCEFDPVRHVIGSLERAQTLDPNPQPGSSHEPLDLTLALEHAHVNDRSRSSVAGAW*
Ga0164305_1012523823300012989SoilMLVQPQQAATVCEFDLVQHTIRSSKRAQTLDPNPQPGSSHEPLDLTLDLE
Ga0157378_1203485423300013297Miscanthus RhizosphereMLVQPQQAATVCEFDPVQHVIGSLERAQTLDPNPRPESSHEPLNLTLDLEHAHVSDR*
Ga0157375_1080575813300013308Miscanthus RhizosphereMLVQPQQAATESELDLVQHVIRSRVRPQTLDPELTAGELAHEPLNLTLDLEDAHVN*
Ga0163163_1098185723300014325Switchgrass RhizosphereMLVQPQQAATVCEFDLVQDVIGSSERAQTLDPNPQPGSSHEPLNLTLDLEYAPVNGRSRRDCRTAEVKP*
Ga0157379_1266818313300014968Switchgrass RhizospherePQQAATVCELDLVLHTIGLSKRAQTLDPNQPPENSHEPLNLTLDLEYAPVNGRSRRDCRTAEVKP*
Ga0132258_1019411873300015371Arabidopsis RhizosphereVCELDLVQHVIRSRERAQTLDPELTAGELAHEPLNLTLDLEDAHVN*
Ga0132258_1108933553300015371Arabidopsis RhizosphereVCELDLVQHVIRSRERAQTLDPELTAGELAHEPLNLTLDLEHAHVN*
Ga0132256_10149443913300015372Arabidopsis RhizosphereMLVQPQQAATVCEFDLVQHTIRSSQRAQTLDPNPQPGSSHEPLDLTLDLEYA
Ga0132256_10314081613300015372Arabidopsis RhizosphereMLVQPQQAATVCELDLVQHAIGSSERAQTLDPNQRPENSHEPLNLTLDLEHAHVSSHLQKRGIFVFTL
Ga0182036_1121276413300016270SoilMLVQPQQAATVCELDLVQHVIGSWKRAQTLDPNQRRENCPSTLNLTLDLEHAHVSR
Ga0163161_1122587123300017792Switchgrass RhizosphereDPVQHVIGSLERAQTLDPNPRPESSHEPLNLTLDLEYAPVNGRSRRDCRTAEVKP
Ga0163161_1196553113300017792Switchgrass RhizosphereMLVQPQQAATVCELDPVPHTIGSSKRAQTLDPNQPPENSHEPLNLTLDLEYAPVNGRSRRDCRTAEVK
Ga0163161_1208600713300017792Switchgrass RhizosphereMLVQPQQAATVCEVDPVQHVIGSLERAQTLDPNPRPESSHEPLERFSHQF
Ga0187817_1108652513300017955Freshwater SedimentMLVQPQQAATVCELDLVQHAIGSTKPAQTLDPMPITETAHESLNPALDFKHAHVSCHTRADVVTMRPGRIG
Ga0187782_1091002823300017975Tropical PeatlandGMLVQPQQAATVCELDLVQHGIGSGQRAHTLDPTSTEAAHEPLNPALDFKYAHVSGPSYLGKLDFKLENW
Ga0190271_1195848423300018481SoilMLVQPQQAATVCELDLVQHTIGSSKRAQTLDPNQAPEKSHEPLNLTLDLEYAHVSGHCAR
Ga0210395_1009134413300020582SoilMLVQPQQTATVCELDLVQHDIGSWKRAQTLDPNQRPEDCHEPLNLTLDYGHAHVNGHSYLLS
Ga0210401_1015880723300020583SoilMLVQPQQTATVCELDLVQHDIGSWKRAQTLDPNQRPEDCHEPLNLTLDYGHAHVNGHSLTLP
Ga0210405_1030987213300021171SoilMLVQPQQTATVCELDLVQHDIGSWKRAQTLDPNQRPEDCHEPLNLTLDYGHAHVSGHSL
Ga0210396_1144781213300021180SoilMLVQPQQTATVCELDLVQHDIGSWKRAQTLDPNQRPEDCHEPLNLTLDYGHAHVNGHSLT
Ga0196959_1000980923300021184SoilMLVQPQQAATVCEFDLVPHTIGSLERAQTLDPNPQPGSSHEPLDLTLTSN
Ga0210393_1020581613300021401SoilMLVQPQQTATVCELDLVQHDIGSWKRAQTLDPNQRPEDCHEPLNLTLDYGHAHVNGHSL
Ga0210391_1020027423300021433SoilMLVQPQQTATVCELDLVQHDIGSWKRAQTLDPNQRPEDCHEPLNLTLDYGHAHVNSHSLLWS
Ga0126371_1014373013300021560Tropical Forest SoilMLVQPQQQAATVCELDLMQHVIRSRERAQTLDPELTAGELAHEPLNLTLDLEHAHVN
Ga0247745_100657023300022898SoilMLVQPQQAATVCEFDLVQHTIRSSKRAQTLDPNPQPGSSHEPLDLTLDLEYAHVSDRS
Ga0247802_102103423300023077SoilMLVQPQQAATVCEFDLVQHTIRSSKRAQTLDPNPQPGSSHEPLDLTLDLEYAHVSGHY
Ga0247695_101869223300024179SoilMLVQPQQAATVSELDLVQHVIRSRERAQTLDPELTAGELAHEPLNLTLDLEDAHVN
Ga0247660_108880613300024317SoilMLVQPQQAATVSELDLVQHVIRSRERAQTLDPELTAGELAHEPLNLTLD
Ga0207656_1001870813300025321Corn RhizosphereMLVQPQQAATVCEFDLVQHTIRSSKRAQTLDPNPQPGSSHEPLDLTLDLEYAHVRRFSEL
Ga0207713_106632813300025735Switchgrass RhizosphereMLVQPQQAATVCEFDLVQHTIRSSKRAQTLDPNPQPGSSHEPLDLTLDLEYAHVNDRSR
Ga0207710_1026257213300025900Switchgrass RhizosphereMLVQPQQAATVCEFDLVQHVIRSRERAQTLDPKLTAGELAHEPLNLTLDLEHAHVN
Ga0207644_1057123513300025931Switchgrass RhizosphereMLVQPQQAATVCELDLVPHTIGSSKRAQSLDPNQPPENSHEPLNLTLDLEYAPVNGRSRRDCRTAEVMVWTT
Ga0207690_1115784123300025932Corn RhizosphereLVQPQQAATVCELDLVPHTIGSSKRAQTLDPNQPPENSHEPLYLTLDLKHAHVSGFPISLETSNRNG
Ga0207686_1031499713300025934Miscanthus RhizosphereMLVQPQQAATVCEFDLVQHTIRSSKRAQTLDPNPQPGSSHEPLDLTLDLEYAHVRRSLSP
Ga0207709_1142522723300025935Miscanthus RhizosphereMLVQPQQAATVCEFDLVQHTIRSSKRAQTLDPNPQPGSSHEPLDLTLDLEYAHVSWPGC
Ga0207670_1167871713300025936Switchgrass RhizosphereMLVQPQQAATVCEFDPVQHVIGSLERAQTLDPNPRPESSHEPLNLTLDLEHAHVNDR
Ga0207661_1075642213300025944Corn RhizosphereMLVQPQQAATVCELDLVPHTIGSSKRAQTLDPNQPPENSHEPLYLTLD
Ga0207679_1028328023300025945Corn RhizosphereMLVQPQQAATVCEFDPVQHVIGSLERAQTLDPNPRPESSHEPLNLTLDLEHAM
Ga0207703_1170824313300026035Switchgrass RhizosphereMLVQPQQAATVCELDLVQHVIRSRERAQTLDPELTAGELAHEPLNLTLDLED
Ga0207703_1197757313300026035Switchgrass RhizosphereMLVQPQQAATVCEFDLVQHTIRSSKRAQTLDPNPQPGSSHEPLDLTLDLEYAHVSGFRLN
Ga0207708_1135393213300026075Corn, Switchgrass And Miscanthus RhizosphereMLVQPQQAATVCEFDPVQHVIGSLERAQTLDPNPRPESSHEPLNLTLDLEHAHVND
Ga0207641_1023662523300026088Switchgrass RhizosphereMLVQPQQAATVCELDLVQHVIRSRERAQTLDPELTAGELAHEPLNLTLDLEHAHVN
Ga0307318_1037772223300028744SoilMLVQPQQAATVCEFDLVPHTIRSSKRAQTLDPNPPAGSSHEPLDLTLDLEYAHVNDRS
Ga0318572_1096512813300031681SoilMLVQPQQAATVCGLDLVQHTIRSWKRAQTRIRTNRRSTAHEPVNLTLDFEHAHVSCHPAE
Ga0306918_1050496423300031744SoilQQAATVCELDLVQHAIRSSKRAQTLDPNQRPENCHEPVNLTLDFEHAHVSGHSD
Ga0310904_1007246713300031854SoilMLVQPQQAATVCEFDPVQHTIGSLERAQTLDPNPRPESSHGPLNLTLDLEY
Ga0310892_1133176223300031858SoilMLVQPQQAATVCELDLVPHTIGSSKRAQTLDPNQPPENSHEPLKLTLDLEYAHV
Ga0306926_1155234013300031954SoilLVQPQQAATVCELDLVQHAIRSSKRAQTLDPNQRPENCHEPVNLTLDFEHAHVSGHSD
Ga0306924_1066732313300032076SoilMLVQPQQAATVCELDLVQHAIRSWKRAQTRIRTNRRSTAHEPVNLTLDFEHAHVSCHPAE
Ga0307472_10208326913300032205Hardwood Forest SoilMLVQPQQAATVCELDLVQHVIRSRERAQTLDPELTAGELAHEPLNLTLDL
Ga0306920_10157635313300032261SoilMLVQPQQAATVCELDLVQHAIRSSKRAQTLDPNQRPENCHEPVNLTLDFEHAHVSGHSD
Ga0373958_0122393_3_1943300034819Rhizosphere SoilMLVQPQQAATVCEFDLVQHTIRSSKRAQTLDPNPQPGSSHEPLDLTLDLEYAHVNDRSRSSAAG


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.