Metagenome / Metatranscriptome Family F071769

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071769
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	70 residues
Representative Sequence	MPGAPYYAEAFSPLPGRCFRLVAHPGEAGPTHCPEPVAWRGSWRAPNGRRYRVEACEGHRPPPV
Number of Associated Samples	75
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	24.58 %
% of genes near scaffold ends (potentially truncated)	42.62 %
% of genes from short scaffolds (< 2000 bps)	84.43 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.377 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (24.590 % of family members)
Environment Ontology (ENVO)	Unclassified (36.066 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.164 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.26% β-sheet: 15.22% Coil/Unstructured: 81.52%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF12680	SnoaL_2	5.74
PF02796	HTH_7	4.10
PF07702	UTRA	4.10
PF13783	DUF4177	2.46
PF12587	DUF3761	2.46
PF01545	Cation_efflux	2.46
PF13023	HD_3	1.64
PF12728	HTH_17	1.64
PF13602	ADH_zinc_N_2	1.64
PF08281	Sigma70_r4_2	1.64
PF14088	DUF4268	0.82
PF13676	TIR_2	0.82
PF01972	SDH_sah	0.82
PF00465	Fe-ADH	0.82
PF01872	RibD_C	0.82
PF13683	rve_3	0.82
PF13358	DDE_3	0.82
PF12681	Glyoxalase_2	0.82
PF01022	HTH_5	0.82
PF02417	Chromate_transp	0.82
PF07505	DUF5131	0.82
PF00589	Phage_integrase	0.82
PF14338	Mrr_N	0.82
PF03459	TOBE	0.82
PF00535	Glycos_transf_2	0.82
PF02945	Endonuclease_7	0.82
PF13489	Methyltransf_23	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	2.46
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	2.46
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	2.46
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.64
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.82
COG0337	3-dehydroquinate synthetase	Amino acid transport and metabolism [E]	0.82
COG0371	Glycerol dehydrogenase or related enzyme, iron-containing ADH family	Energy production and conversion [C]	0.82
COG1454	Alcohol dehydrogenase, class IV	Energy production and conversion [C]	0.82
COG1979	Alcohol dehydrogenase YqhD, Fe-dependent ADH family	Energy production and conversion [C]	0.82
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.82
COG2059	Chromate transport protein ChrA	Inorganic ion transport and metabolism [P]	0.82
COG4422	Bacteriophage protein gp37	Mobilome: prophages, transposons [X]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.38 %
All Organisms	root	All Organisms	42.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.38 %
cellular organisms	root	All Organisms → cellular organisms	41.80 %
Viruses	superkingdom	All Organisms → Viruses	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.38 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	41.80 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.38 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	27.05 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.38 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	26.23 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.38 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	16.39 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	2.46 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.38 %
Actinobacteria bacterium QS_5_72_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium QS_5_72_10	2.46 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.64 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.64 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.82 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.82 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.82 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.82 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.38 %
Actinobacteria bacterium QS_5_72_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium QS_5_72_10	2.46 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.64 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.64 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	0.82 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.82 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.82 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.82 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.38 %
Actinobacteria bacterium QS_5_72_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium QS_5_72_10	2.46 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.64 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.82 %
Couchioplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Couchioplanes	0.82 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.82 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.82 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.82 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.38 %
Actinobacteria bacterium QS_5_72_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium QS_5_72_10	2.46 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.64 %
Couchioplanes caeruleus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Couchioplanes → Couchioplanes caeruleus	0.82 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.82 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.82 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.82 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.82 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_10964522	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300000559\|F14TC_100976778	Not Available	1326	Open in IMG/M
3300000559\|F14TC_101801877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	699	Open in IMG/M
3300000956\|JGI10216J12902_104786237	Not Available	553	Open in IMG/M
3300000956\|JGI10216J12902_112355288	Not Available	982	Open in IMG/M
3300000956\|JGI10216J12902_113613418	Not Available	657	Open in IMG/M
3300001431\|F14TB_100854863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2019	Open in IMG/M
3300004463\|Ga0063356_104469728	Not Available	601	Open in IMG/M
3300005562\|Ga0058697_10173195	Not Available	959	Open in IMG/M
3300005981\|Ga0081538_10016055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5761	Open in IMG/M
3300006049\|Ga0075417_10440667	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300006049\|Ga0075417_10618958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	552	Open in IMG/M
3300006844\|Ga0075428_100061584	Not Available	4110	Open in IMG/M
3300006845\|Ga0075421_101020932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	935	Open in IMG/M
3300006845\|Ga0075421_101235765	Not Available	831	Open in IMG/M
3300006847\|Ga0075431_100331452	Not Available	1533	Open in IMG/M
3300006852\|Ga0075433_10230133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1646	Open in IMG/M
3300006854\|Ga0075425_100643807	Not Available	1218	Open in IMG/M
3300006871\|Ga0075434_100204721	Not Available	1994	Open in IMG/M
3300006880\|Ga0075429_100315671	Not Available	1368	Open in IMG/M
3300006969\|Ga0075419_10290419	Not Available	1100	Open in IMG/M
3300006969\|Ga0075419_11515542	Not Available	503	Open in IMG/M
3300009094\|Ga0111539_12939376	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300009094\|Ga0111539_13144346	Not Available	533	Open in IMG/M
3300009100\|Ga0075418_11207737	Not Available	820	Open in IMG/M
3300009147\|Ga0114129_10149234	Not Available	3200	Open in IMG/M
3300009147\|Ga0114129_12317752	Not Available	644	Open in IMG/M
3300009162\|Ga0075423_10042150	All Organisms → cellular organisms → Bacteria	4675	Open in IMG/M
3300009162\|Ga0075423_11259621	Not Available	790	Open in IMG/M
3300009789\|Ga0126307_10024368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4606	Open in IMG/M
3300009789\|Ga0126307_10518467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	962	Open in IMG/M
3300009789\|Ga0126307_11564571	Not Available	535	Open in IMG/M
3300009840\|Ga0126313_10511237	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300009840\|Ga0126313_10972095	Not Available	695	Open in IMG/M
3300010037\|Ga0126304_10152434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1496	Open in IMG/M
3300010038\|Ga0126315_10196144	Not Available	1214	Open in IMG/M
3300010038\|Ga0126315_10422401	Not Available	841	Open in IMG/M
3300010038\|Ga0126315_10627591	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300010041\|Ga0126312_10185298	All Organisms → cellular organisms → Bacteria	1452	Open in IMG/M
3300010041\|Ga0126312_10588225	Not Available	800	Open in IMG/M
3300010042\|Ga0126314_10037244	Not Available	3088	Open in IMG/M
3300010042\|Ga0126314_11258879	Not Available	554	Open in IMG/M
3300010045\|Ga0126311_11872997	Not Available	509	Open in IMG/M
3300012349\|Ga0137387_10348718	Not Available	1072	Open in IMG/M
3300012938\|Ga0162651_100056143	Not Available	628	Open in IMG/M
3300014487\|Ga0182000_10127589	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300014487\|Ga0182000_10665539	Not Available	510	Open in IMG/M
3300015372\|Ga0132256_102953683	Not Available	572	Open in IMG/M
3300018072\|Ga0184635_10349466	Not Available	568	Open in IMG/M
3300018073\|Ga0184624_10445520	Not Available	569	Open in IMG/M
3300018081\|Ga0184625_10011791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4034	Open in IMG/M
3300018081\|Ga0184625_10476320	Not Available	635	Open in IMG/M
3300018466\|Ga0190268_10615021	Not Available	774	Open in IMG/M
3300019269\|Ga0184644_1246297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	761	Open in IMG/M
3300019767\|Ga0190267_11118753	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300019869\|Ga0193705_1089391	Not Available	580	Open in IMG/M
3300021078\|Ga0210381_10048545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1264	Open in IMG/M
3300022694\|Ga0222623_10369957	Not Available	546	Open in IMG/M
3300022756\|Ga0222622_10089182	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1866	Open in IMG/M
3300022756\|Ga0222622_10525108	Not Available	848	Open in IMG/M
3300022756\|Ga0222622_10888342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium QS_5_72_10	653	Open in IMG/M
3300027577\|Ga0209874_1153734	Not Available	516	Open in IMG/M
3300027880\|Ga0209481_10130462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1231	Open in IMG/M
3300027907\|Ga0207428_11052892	Not Available	570	Open in IMG/M
3300027909\|Ga0209382_10374690	Not Available	1590	Open in IMG/M
3300028712\|Ga0307285_10009278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	2084	Open in IMG/M
3300028719\|Ga0307301_10030713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1609	Open in IMG/M
3300028719\|Ga0307301_10215097	Not Available	625	Open in IMG/M
3300028719\|Ga0307301_10254612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium QS_5_72_10	573	Open in IMG/M
3300028720\|Ga0307317_10009583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2878	Open in IMG/M
3300028722\|Ga0307319_10004638	All Organisms → cellular organisms → Bacteria	4188	Open in IMG/M
3300028722\|Ga0307319_10029301	Not Available	1701	Open in IMG/M
3300028744\|Ga0307318_10075587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1127	Open in IMG/M
3300028744\|Ga0307318_10316119	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300028771\|Ga0307320_10011460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3173	Open in IMG/M
3300028778\|Ga0307288_10247524	Not Available	698	Open in IMG/M
3300028796\|Ga0307287_10018922	All Organisms → cellular organisms → Bacteria	2382	Open in IMG/M
3300028811\|Ga0307292_10106643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1106	Open in IMG/M
3300028828\|Ga0307312_11197530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium QS_5_72_10	502	Open in IMG/M
3300028828\|Ga0307312_11198151	Not Available	502	Open in IMG/M
3300028876\|Ga0307286_10023340	All Organisms → cellular organisms → Bacteria	2005	Open in IMG/M
3300028876\|Ga0307286_10023803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1987	Open in IMG/M
3300028876\|Ga0307286_10206604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	713	Open in IMG/M
3300028876\|Ga0307286_10211421	Not Available	705	Open in IMG/M
3300028878\|Ga0307278_10001284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12521	Open in IMG/M
3300028880\|Ga0307300_10031836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1438	Open in IMG/M
3300028880\|Ga0307300_10068909	Not Available	1028	Open in IMG/M
3300028880\|Ga0307300_10128294	Not Available	784	Open in IMG/M
3300028881\|Ga0307277_10223086	Not Available	829	Open in IMG/M
3300028885\|Ga0307304_10613050	Not Available	505	Open in IMG/M
3300030336\|Ga0247826_10790653	Not Available	742	Open in IMG/M
3300030510\|Ga0268243_1064087	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300030902\|Ga0308202_1062783	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300031548\|Ga0307408_100170578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1737	Open in IMG/M
3300031731\|Ga0307405_10118808	Not Available	1805	Open in IMG/M
3300031731\|Ga0307405_11419630	Not Available	607	Open in IMG/M
3300031731\|Ga0307405_11433115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	605	Open in IMG/M
3300031731\|Ga0307405_11846859	Not Available	538	Open in IMG/M
3300031731\|Ga0307405_12087448	Not Available	508	Open in IMG/M
3300031824\|Ga0307413_10703249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	840	Open in IMG/M
3300031852\|Ga0307410_10469232	Not Available	1030	Open in IMG/M
3300031852\|Ga0307410_10752419	Not Available	825	Open in IMG/M
3300031901\|Ga0307406_10156907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1631	Open in IMG/M
3300031901\|Ga0307406_10167154	All Organisms → cellular organisms → Bacteria	1588	Open in IMG/M
3300031901\|Ga0307406_11934212	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300031903\|Ga0307407_10994967	Not Available	648	Open in IMG/M
3300031995\|Ga0307409_100682680	All Organisms → Viruses → Predicted Viral	1024	Open in IMG/M
3300031995\|Ga0307409_100873751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Couchioplanes → Couchioplanes caeruleus	911	Open in IMG/M
3300031995\|Ga0307409_101801855	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300031995\|Ga0307409_102076515	Not Available	598	Open in IMG/M
3300032004\|Ga0307414_11230533	Not Available	694	Open in IMG/M
3300032004\|Ga0307414_12102112	Not Available	527	Open in IMG/M
3300032005\|Ga0307411_11828503	Not Available	564	Open in IMG/M
3300032126\|Ga0307415_101360590	Not Available	674	Open in IMG/M
3300032126\|Ga0307415_101626931	Not Available	621	Open in IMG/M
3300032126\|Ga0307415_102161637	Not Available	544	Open in IMG/M
3300032159\|Ga0268251_10427995	Not Available	579	Open in IMG/M
3300034172\|Ga0334913_025034	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1313	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	58.20%
Host-Associated	Host-Associated	41.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.00%
Plants	Host-Associated → Plants	41.80%
Aquatic	Environmental → Aquatic	8.20%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	49.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	38.52%
Sediment	Environmental → Aquatic → Sediment	6.56%
Freshwater	Environmental → Aquatic → Freshwater	1.64%
Phylloplane	Host-Associated → Plants → Phylloplane	1.64%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.82%
Roots	Host-Associated → Plants → Roots	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	37.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.56%
Loam	Environmental → Terrestrial → Soil → Loam	3.28%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.64%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	1.64%
Sand	Environmental → Terrestrial → Soil → Sand	0.82%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.82%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	37.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.56%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.28%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.46%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.64%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	1.64%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.82%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.82%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.82%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	24.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	19.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	18.03%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	13.11%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.28%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.28%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.46%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.64%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	1.64%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.82%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.82%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.82%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.82%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.82%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_109645222	3300000550	Soil	AGALALPGRCFRLVSGGEGGGSTHCPDPPVWRGPFRAPNGRRXRVEACEGHRPR*
F14TC_1009767783	3300000559	Soil	MVDYRVMTHSPTPYYAEVFAPMPGRCFRMVSRGSEGGGPTHCPEPPVWRGSFRARNGRRYTVEACEGHRPPAGSGREGTGG*
F14TC_1018018773	3300000559	Soil	YAEAFSPLPGRCFRLVSRHGDAGPTHCPEPVAWRGSWRAPNGRRYRIEACDGHRPAPDEGQGPHRREARQNRVAYG*
JGI10216J12902_1047862372	3300000956	Soil	MSGTGPAPYHAEAFFPVPGRCLRVISHGGGATHCPEPPLWRGTFRASNGRRYRVEACEGHRPPAETDR*
JGI10216J12902_1123552883	3300000956	Soil	MTAPYYAEAFAILPGRCFRLVERAGEAGPMHCPDPARWRGTFRARSGRRYAVQACDGHRGPLQDGRPLRDV*
JGI10216J12902_1136134182	3300000956	Soil	MPGAPYYAEAFSPLPGRCFRLVAHHGEAGPTPCPEPVAWRGSWRAPNGRHCRVEACEGHWPALVEDSRPGA*
F14TB_1008548633	3300001431	Soil	MTHSPTPYYAEVFAPMPGRCFRMVSRGSEGGGPTHCPEPPVWRGSFRARNGRRYTVEACEGHRPPAEAGG*
Ga0063356_1044697282	3300004463	Arabidopsis Thaliana Rhizosphere	MTHLPTPYYAQAFAAMPGRCFRFVSGGEGGGPTHCPEPPVWHGSWRAPNGRRYRVEACAGHRPPSETDR*
Ga0058697_101731952	3300005562	Agave	MPGAPYYAEAFSPLPGRCFRLVARHGEAGPTHCPEPVAWRGSWRAPNGRRYRIEACEGHRPTPDEGSGAA*
Ga0081538_100160557	3300005981	Tabebuia Heterophylla Rhizosphere	MPGAPYYAEAFSPLPGRCFRLVAHHGEAGPTHCPEPVAWRGSWRAPNGCRYRVEACEGHRPAPVEGSGSNA*
Ga0075417_104406672	3300006049	Populus Rhizosphere	MSGTAPYYTQAFSPLPDRCFRLVASQSEAGPAYCPEPVAWRGSWRAPNGRRYRVEACEGHRPPPAQGSGPPA*
Ga0075417_106189582	3300006049	Populus Rhizosphere	MTYSPTPYYAEVFALMPGRCFRMVSRGREGGGPTHCPEPPAWRGIFRAPNGRRYRVEAC
Ga0075428_1000615849	3300006844	Populus Rhizosphere	MASWWIIGVMTYSPTPYYAEVFAPMPGRCFRMVSRGSEGGGPTHCPEPPTWRGTFRAPNGRRYRVEACEGHQPPAETDR*
Ga0075421_1010209322	3300006845	Populus Rhizosphere	MTYSPTPYYAEVFALMPGRCFRMVSRGREGGGPTHCPEPPTWRGTFRAPKGHRYRVEACAGHRPPAETDR*
Ga0075421_1012357651	3300006845	Populus Rhizosphere	MASRWIIGVMTYSPTPYYAEVFAPMPGRCFRMVSRGSEGGGPTHCPEPPTWRGTFRAPNGRRYRVEACEGHQPPAETDR*
Ga0075431_1003314524	3300006847	Populus Rhizosphere	LTTEAHPPAPHYAEAFSPMPGRCFRFISHGGEGGGPTHCPEPPVWRGSFRAPNGRRYTVEACEGHRPPAEAGR*
Ga0075433_102301331	3300006852	Populus Rhizosphere	GSYSPTPYYAEVFAPMPGRCFRMVSRGSEGGGPTHCPEPPIWRGTFRAPNGRRYRVEACEGHQPPAETDR*
Ga0075425_1006438071	3300006854	Populus Rhizosphere	SPTPYYAEVFAPMPGRCFRMVSRGSEGGGPTHCPEPPIWRGTFRAPNGRRYRVEACEGHQPPAETDR*
Ga0075434_1002047214	3300006871	Populus Rhizosphere	MASWWIIGVMTYSPTPYYAEVFAPMPGRCFRMVSRGSEGGGPTHCPEPPIWRGTFRAPNGRRYRVEACEGHQPPAETDR*
Ga0075429_1003156713	3300006880	Populus Rhizosphere	MASWWIIGVMTYSPTPYYAEVFAPMPGRCFRMVSRGSEGGGPTHCPEPPTWRGTFRAPNGRRYRVEACEGRQPPAETDR*
Ga0075419_102904194	3300006969	Populus Rhizosphere	MTHSPTPYYAEVFAPMTGRCFRMVSRGSEGGGPTHCPEPPAWRGIFRAPNGRRYRVEACEGRQPPAETDR*
Ga0075419_115155422	3300006969	Populus Rhizosphere	MASRWIIGVMTYSPTPYYAEVFAPMPGRCFRMVSRGSEGDGPTHCPEPPTWRGTFRAPNGRRYRVEACEGRQP
Ga0111539_129393761	3300009094	Populus Rhizosphere	MSGTAPFYTQALSPLPGRYFLLVASQGEAGPTHCPEPVAWRAPNGRHYRVEACEGRFPQPRRLAIAGCRSAPRALRS*
Ga0111539_131443462	3300009094	Populus Rhizosphere	APMPGRCFRMVSRGSEGGGPTHCPEPPVWRGSFPARNGRRYTVEACEGHRPPEETGR*
Ga0075418_112077372	3300009100	Populus Rhizosphere	MVEPVSGTSPYYAEAFSPLPGRCFRLVARHGEGGPTHCPEPPTWRGSWRAPNGRRYRVEACEGHRPPAVG*
Ga0114129_1014923410	3300009147	Populus Rhizosphere	MASRWIIGVMTYSPTPYYAEVFAPMPGRCFRMVSRGSEGGGPTHCPEPPTWRGTFRAPNGRRYRVEACEGRQPPAETDR*
Ga0114129_123177521	3300009147	Populus Rhizosphere	MASWWIIGVMTYSPTSYYAEVFAPMPGRCFRMVSRGSEGGGPTHCPEPPIWRSTFRAPNGRRYRVEACEGHQPPAETDR*
Ga0075423_100421509	3300009162	Populus Rhizosphere	MTHSPTPCYAEVFAPMPGRCFRMVSRGSEGGGPTHCPEPPVWRGSFPARNGRRYTVEACEGHRPPEETGR*
Ga0075423_112596211	3300009162	Populus Rhizosphere	MPGAPYYAEVFSPLPGRCFRLVAHHGEAGPTHCPEPVTWRGSWRAPNGRRYRVEACEGHRPASVEGSGGA*
Ga0126307_100243683	3300009789	Serpentine Soil	MTTAGTAPHYAEAFYPMPGRCFRLVSGGEGGGPTHCPEPPVWHGSWRAPNGRRYRVQACEGHRPSNP*
Ga0126307_105184672	3300009789	Serpentine Soil	MVEPVSGTAPYYAEAFSPLPGRCFRLVARHGEGGPTHCPEPPTWRGTWRAPNGRRYRVEACEGHRPP
Ga0126307_115645711	3300009789	Serpentine Soil	GAPYYAEAFSRLPGRCFRMVARHGEGGPMHCSEPVAWSGSWRAPNGRHYRVEACEGHRPAPAEGSDTAA*
Ga0126313_104140452	3300009840	Serpentine Soil	MPGRCFRMVAHDSEGGPAHCLEPPTWRGTFRAPNGRRYTVEACEGHRPPADQGGEAGRPR
Ga0126313_105112372	3300009840	Serpentine Soil	MSGTAPYSTQAFSPLPGRCFRLISGREGGGPTHCPEPPVWRGPFHTPNGRRYRVEACEGHRPR*
Ga0126313_109720952	3300009840	Serpentine Soil	MPGAPYYAEAFSPLPGRCFRLVARLGEAGPTHCPEPVAWRGSWRAPNGRRYRIEACEGHRPSPDEGSGSTG*
Ga0126304_101524342	3300010037	Serpentine Soil	VTTGTAPYYAEAFFPMPGRCFRLIARAGEGGPTHCPEPPTWHGSWRAPNGRRYRVEACGGHRPPADHGGGAAWAR*
Ga0126315_101961441	3300010038	Serpentine Soil	MSGTVPYCTQVFSPLPDRCFRLVSGGEGGGTTHCPEPPVWRRLFRARNGRRYRVEACEGHRPR*
Ga0126315_104224012	3300010038	Serpentine Soil	MPAAPYYAEAFSPLPGRCFRLVAHPGEAGPTHCLEPVAWRGSWRAPNGRRYRIEACEGHRPPPEEGVGPTT*
Ga0126315_106275913	3300010038	Serpentine Soil	MSGTAPYYTQAFWPLPGRCFRLVSGGEDGGPTHCPEPPVWRGPFRIPNGRRYRVEACEGHRPR*
Ga0126312_101269663	3300010041	Serpentine Soil	MPGRCFRLIARAGEGGPAHCPEPPIWRGSWRAPNGRRYRVEACDRHRPPADQGGG
Ga0126312_101852981	3300010041	Serpentine Soil	ASTASNEGTSGAAPYYAEAFYPMPGRCFRLIARASEGGPAHCPAPPMWRGSWRAPNGRRYRVEACEGHRPPADQGEGAAWAR*
Ga0126312_105882251	3300010041	Serpentine Soil	MPEAPYYAEAFSLLPGRCFRMVTHHGEAGPTHCPTPVTWRGSWRAPNGRRYWVDACQGHRPTLVEGSGRAT*
Ga0126314_100372441	3300010042	Serpentine Soil	MPGAPYYAEAFALLPGRCFRMVAHHGEAGPTHCPEPVVWRGSWRAPNGRRYRVEACEGHRPPPVEGSDSTT*
Ga0126314_112588792	3300010042	Serpentine Soil	MPGAPYYAEAFSPLPGRCFRMVTRHGGGAGPTHCPEPVVWRGSWRAANGRRYWIEACEGHRPP
Ga0126311_118729971	3300010045	Serpentine Soil	APYYAEAFSPLPGRCFRMVANPGEAGPTHCAEAVAWRGSWQAPNGRRYRIEACEGHRPAAVEGNDSPT*
Ga0137387_103487183	3300012349	Vadose Zone Soil	MPAPYYAEAFAPMPGRCFRMITEQAGGGPTHCSDPVVWRGTWRAPNGRRYQVEACDGHQPMPASD
Ga0162651_1000561432	3300012938	Soil	GVMTHSPTPYYAEVFAPMPGRCFRMVSRGSEGGGPTHCPEPPTWRGTFRARDGRRYTVEACEGHRPPAGSRREGTGG*
Ga0182000_101275892	3300014487	Soil	MSGTAPYYAEGFFPVPGRYFRLISHGRQGGGPTHCPEPPVRRGTFQAPNGRRYRVEACEGHRPPAGDR*
Ga0182000_106655391	3300014487	Soil	MPGAPYYAEAFSPLPGRCFRLVASASEAGPTHCPEPVAWRGSWRAPNGRRYRIEACEGHRPPPIEGSKPGA*
Ga0132256_1029536831	3300015372	Arabidopsis Rhizosphere	MIGVMTHSPTPNYAEEFAPMPGRCFRFVSGGEGGGPTHCPEPPAWRGMFRARNGRRYTVEACEGHRPPAETDR*
Ga0184635_103494662	3300018072	Groundwater Sediment	MVEPVSGTSPYYAEAFSPLPGRCFRLVARHGEGGPTHCPEPPTWRGSWRAPNGRRYRVEACEGHRPPAVG
Ga0184624_104455201	3300018073	Groundwater Sediment	APYYAEAFSPLPGRFFRMVAHHGEAGPTHCPEPVAWCGSWRAPNGRRYRIEACEGHRPLPIEEGGAAV
Ga0184625_100117917	3300018081	Groundwater Sediment	MTTAGGAPYYAEAFTLAPGRCFRLIGRGGQGPAPCPEPPVWRGSWRAPNGIRYRVEACEGHRPHTASTAMPDDEG
Ga0184625_104763203	3300018081	Groundwater Sediment	LVPRRWFRILLSCQEPYYAEAFSPLPGRCFRLVAHPGEAGPSHCPEPVTWRGSWQAPSGRRYRIEACEGHQPAPAEGSGPTA
Ga0190268_106150211	3300018466	Soil	MPGAPYYAEAFSPLPGRCFRLVAHHGEAGLTHCFEPVAWRGSWRAPNDRRYRIEACEGHRPPDVSRRPPPR
Ga0184644_12462971	3300019269	Groundwater Sediment	YAEAFSPLPGRCFRMVAHHGEAGPAHCPEPVTWRGSWRAPSGRRYRVEACEGHKPPLVEDGGSAA
Ga0190267_111187531	3300019767	Soil	MNGTAPYYTQAFSTLPDRGCRLVSGGEGGGPSHCPEPSVWRGPFRAPNGRRYQVEACEGH
Ga0193705_10893912	3300019869	Soil	MAAQSYYAEAFSPMPGRCFRMIAHHGEAGPKHCPEPVAWRGSWRAPNGRRYRVEACEGHGPPPVEGNDTAV
Ga0210381_100485453	3300021078	Groundwater Sediment	MPEAPYYAEAFSPLPGRCFRMVAHHGEAGPAHCPEPVTWRGSWRAPSGRRYRIEACEGHRPAPDEG
Ga0222623_103699571	3300022694	Groundwater Sediment	PQLVPYPVAMPGAPYYAEAFSSLPDRCFRMVAHHGEAGPTHCPEPVAWRGSWRPPNGRRYRIEACEGHRPLPIEEGGAAV
Ga0222622_100891823	3300022756	Groundwater Sediment	MPGAPYYAEAFSPLPGRCFRLVAHPGEAGPTHCPEPVAWRGSWRAPNGRRYRVEACEGHRPPPV
Ga0222622_105251082	3300022756	Groundwater Sediment	MTTAGGAPYYAEAFTLAPGRCFRLIARDGEGGPTHCPEPPAWRGSWRAPNGIRYRVEACEGHRPHTASTAMPDDEG
Ga0222622_108883422	3300022756	Groundwater Sediment	MPGAPYYAEAFSSLPDRCFRMVAHHGEAGPTHCPEPVAWRGSWRPPNGRRYRIEACEGHRPLPIEEGGAAV
Ga0209874_11537341	3300027577	Groundwater Sand	MAPMLHHGTMTAPYYAEAFAPLPDRCFRLVARQGGQAGPVHCPEPPVWRGTWRARNGRRYRVEACEGHR
Ga0209481_101304623	3300027880	Populus Rhizosphere	MSGTAPYYTQAFSPLPDRCFRLVASQSEAGPAYCPEPVAWRGSWRAPNGRRYRVEACEGHRPPPAQGSGPPA
Ga0207428_110528923	3300027907	Populus Rhizosphere	AEVFAPMPGRCFRMVSRGSEGGGPTHCPEPPIWRGTFRAPNGRRYRVEACEGHQPPAETD
Ga0209382_103746903	3300027909	Populus Rhizosphere	MASRWIIGVMTYSPTPYYAEVFAPMPGRCFRMVSRGSEGGGPTHCPEPPTWRGTFRAPNGRRYRVEACEGRQPPAETDR
Ga0307285_100092781	3300028712	Soil	MPGAPYYAEAFSPLPGRCFRMVTRHAGGTGPTHCPEPVVWRGSWRPPKGRRYRIEACDGHRPAPNEGRALTAAGF
Ga0307301_100307132	3300028719	Soil	MVEPVSGTAPYYAEAFSPLPGRCFRLVARHGEGGPTHCSEPPTWRGTWRAPNGRRYRVEACEGHRPPADLGGGAGRPR
Ga0307301_102150971	3300028719	Soil	RASPLYPAVMPGAPYYAEAFSPLPGRCFRMVAHYGEAGPTHCPEPVAWRGSWRAPNGHRYRIEACEGHRPPPDESSGPTA
Ga0307301_102546122	3300028719	Soil	MPGAPYYAEAFSSLPDRCFRMVAHHGEAGPTHCPEPVAWRGSWRPPNGRRYRIEACEGHR
Ga0307317_100095834	3300028720	Soil	MPGAPYYAQAFSPLPGRCFRMVAHHGEAGPAHCSEPVTWRGSWRAPSGRRYRIEACEGHKPPLVEDGG
Ga0307319_100046383	3300028722	Soil	MPGAPYYAEAFSPLPGRCFRMVAHYGEAGPTHCPEPVAWRGSWRAPNGHRYRIEACEGHRPPPDESSGPTA
Ga0307319_100293012	3300028722	Soil	MVEPVSGTSPYYAEAFSPLPGRCFRLVARHGEGGPTHCPEPPTWRGSWRAPNGCRYRVEACEGHRPPAVG
Ga0307318_100755871	3300028744	Soil	PYYAEAFSPLPGRCFRLVARHGEGGPTHCPEPPTWRGTWRAPNGRRYRVEACEGHRPPADLGGGAGRPR
Ga0307318_103161191	3300028744	Soil	MSGTAPYYMQAFSPLPDRCYCLVSGGEGGGPTHCPKPPVWRGPFRAQNGRRYRVGACEGHRPR
Ga0307320_100114604	3300028771	Soil	MPGAPYYAEAFSSLPDRCFRMVAHHGEAGPTHCPEPVAWRGSWRPPNGRRYRIEACDHRPLPIEEGGAAV
Ga0307288_102475242	3300028778	Soil	MVEPVSGTSPYYAEAFSPLPGRCFRLVARGGQGPAHCPEPPVWRGSWRAPSGRRYRVEACEGH
Ga0307287_100189225	3300028796	Soil	EAFSPLPGRCFRLVARHGEGGPTHCSEPPTWRGTWRAPNGRRYRVEACEGHRPPADLGGGAGRPR
Ga0307292_101066431	3300028811	Soil	MSGTEPYYMQAFSPLPDRCYCLVSGGEGGGPTHCPEPPVWRGPFRTPNGRRYRVEACEGHRPR
Ga0307312_111975301	3300028828	Soil	MPGAPYYAQAFSPLPGRCFRMVAHHGEAGPAHCSEPVTWRGSWRAPSGRRYRIEACEGHKPPLVE
Ga0307312_111981511	3300028828	Soil	MPGAPYYAEAFSPLPGRCFRMVAHHGEAGPMHCPEPVAWRGSWRAPSGRRYRVEACEG
Ga0307286_100169141	3300028876	Soil	RLVARHGEGGPTHCPEPPTWRGTWRAPNGRRYRVEACEGHRPPADLGGGAGRPR
Ga0307286_100233401	3300028876	Soil	MPGAPYYAEAFSPLPGRCFRMVAHPGEAGSTHCPEPVAWRGSWRAPNGNRYRIEACEGHRSPPDESSGPTA
Ga0307286_100238034	3300028876	Soil	MPEAPYYAEAFSPLPGRCFRMVAHHGEAGPAHCPEPVTWRGSWRAPSGRRYRIEACEGHRPAPDEGSGPAT
Ga0307286_102066042	3300028876	Soil	MPGAPYYAEAFSPLPGRCFWMVAHSGQAGPTHCSDPVAWRGSWRAPNGRRYRAEACEGHRLPPGKGSGPT
Ga0307286_102114213	3300028876	Soil	MPGAPYYAEAFSPLPGRCFRMVTRHGGGAGPTHCPEPVVWRGSWRPPKGRRYRIEACDGHRPAPN
Ga0307278_100012842	3300028878	Soil	VPEAPYYTEAFSPLLGRCFRMVTRQGGGAGPTHCPEPVAWRGSWRAPNGRRYRIEACEGHRPTPDEGSRPIG
Ga0307300_100318361	3300028880	Soil	MPGAPYYAEAFSPLPGRCFRLVAHPGEAGPTHCPEPVAWRGSWRAPNGRRYRVVACEGHRPPQ
Ga0307300_100689091	3300028880	Soil	MVEPVSGTAPYYAEAFSPLPGRCFRLVARHGEGGPTHCPEPPTWRGTWRAPNGRRYRVEACEGHRPPADLGGGAGRPR
Ga0307300_101282941	3300028880	Soil	MAAQSYYAEAFSPMPGRCFRMIAHHGEAGPKHCPEPVAWRGSWRAPNGRRYRVEACEGHGPPPVEG
Ga0307277_102230862	3300028881	Soil	MPGAPYYAEAFSPLPGRCFRLVAHHGEAGLSHCPELVVWRGSWRAPNGRRYRIEACEGHRPSPDEGSAAA
Ga0307304_106130501	3300028885	Soil	MPGAPYYAEAFSPLPGRCFRMVTRHGGGAGPTHCPEPVAWRGSWRAPNGRRYRVEACEGHQLAPAE
Ga0247826_107906531	3300030336	Soil	MPGAPYYAEAFSPLPGRCFRMVAHPGEAGPTHCPEPVAWRGSWRAPNANRYRIEACEGHRPPPDESSGPIA
Ga0268243_10640872	3300030510	Soil	MSGTAPYYAEGFFPVPGRYFRLISHGRQGGGPTHCPEPPVRRGTFQAPNGRRYRVEACEGHRPPAGDR
Ga0308202_10627833	3300030902	Soil	MSDTAPYYPQAFSPLPRRCFRLVSGGEGGGPTHCPEPAVWQSPFRTPNGRCY
Ga0307408_1001705782	3300031548	Rhizosphere	MPGAPYYAEAFSPLPGRCFRLVANASEAGPTHCPEPVAWRGSWRAPNGRRYRIEACEGHRPPPIEGSKPGA
Ga0307405_101188082	3300031731	Rhizosphere	MPGAPYYAEAFALLPGRCFRMVAHHGEAGPTHCPEPVVWRGSWRAPNGRRYRVEACEGHRPPPVEGSDSTT
Ga0307405_114196302	3300031731	Rhizosphere	MPGAPYYAEAFSPLPGRCFRMVAHPGGAGPTHCPEPVAWSGSWRAPNGRRYRIEACEGHRLPPNEGSGPTAT
Ga0307405_114331152	3300031731	Rhizosphere	MPGAPYYAEALSPLPGRCFRMVAHHGEAGPTHCPEPVTWRGSWRAPNGRRYSIEACEGHRPPSIEGSGRAA
Ga0307405_118468591	3300031731	Rhizosphere	MPGAPYYAEAFSPLPGRCFRLVAHHGAAGPTHCPQPVAWRGSWRAPNGRRYRVEACEGHRPAPDEGSGPTA
Ga0307405_120874481	3300031731	Rhizosphere	RGMSGTASHDTQAFSALPGRGFRLVSGGEGGGPTHCPEPVAWRGSWRAPNGRRYRIDACEGHRPDPVEGSGPAA
Ga0307413_107032492	3300031824	Rhizosphere	MSGTAPYYTQAFSPLPDRCFRLVAGGEGGGPTHCPEPPVWRPFRTPNGRRYRVEAYEGHRPR
Ga0307410_101639433	3300031852	Rhizosphere	RLIARAGEGGPTHCPEPPTWRGSWRAPNGRRYRVEACEGHRPPADHGGGAAWAR
Ga0307410_104692322	3300031852	Rhizosphere	MPAAPYYAEAFSPLPGRCFRLVASQGEAGPTHCPEPVVWRGSWRAPNGRRYRIEACEGHRPAPDEGSGPAA
Ga0307410_107524191	3300031852	Rhizosphere	PTIFYPAAMPGAPYYAEAFSPLPGRCFRLVANASEAGPTHCPEPVAWRGSWRAPNGRRYRIEACEGHRPPPIEGSKPGA
Ga0307406_101569072	3300031901	Rhizosphere	MPEAPYYAEAFSLLPGRCFRMVTHHGEAGPTHCPTPVTWRGSWRAPNGRRYWVDACQGHRPTLVEGSGRAT
Ga0307406_101671543	3300031901	Rhizosphere	VTTTGTAPYYTEAFFPMPGRCFRLIARAGEGGPTHCPEPPTWRGSWRAPNGRRYRVEACEGHRPPADHGGGAAWAR
Ga0307406_119342122	3300031901	Rhizosphere	MSGTAPYYAEGFFPVPGRYFRLISHGRQGGGPTHCPEPPVRRGTFQASNGRRYRVEACEGHRPPAGDRR
Ga0307407_109949671	3300031903	Rhizosphere	DPCRVSYPAVMPRVPYYAQAFSPLPGRCFRLVSHHGEAGPTHCPEPVAWRGSWRAPNGRRYRIEACEGHRPAPDERGGPAA
Ga0307409_1006826802	3300031995	Rhizosphere	MPGAPYYAEAFSPLPGRCFRMVTRHGGGAGPTHCPEPVVWRGSWRAANGRRYWIEACEGHRPPPHEGSDPTT
Ga0307409_1008737512	3300031995	Rhizosphere	MIGAAPYTQAFSPLPGGCFRLVAYHGEAGPTHCPEPVAWRGSWRPPNGRRFRIEACERHRPRSDEGRGPTAA
Ga0307409_1018018552	3300031995	Rhizosphere	MPAAPYYAEAFSPLPGRCFRLVASQGEAGPTHCPEPVVWRGSWRAPNGRRYRIEACEG
Ga0307409_1020765151	3300031995	Rhizosphere	MPGAPYYAEAFSPLPGRCFRLVTRDGEGDPMHCPQPLVWRGTFRARDGRRYPIEACEGHRPPAV
Ga0307414_112305331	3300032004	Rhizosphere	CAPAARLGAPYYAEAFSLLPGRCFRMVARHGGAGPTHCSEPVAWCGPWRAPNGRRYRVDACEGHRPATVEGSSKAL
Ga0307414_121021121	3300032004	Rhizosphere	EPERRVTTTGTAPYYTEAFFPMPGRCFRLIARAGEGGPTHCPEPPTWRGSWRAPNGRRYRVEACEGHRPPADHGGGAAWAR
Ga0307411_118285031	3300032005	Rhizosphere	AVGPGSTSRRSFIASWWIIRVMTHSPTPYYAEVFAPMAGRCFGMVSGGSEGGGPTHCPEPPTWRGTFRARNGRRYTVEACEGHRPPAGSGREGTGG
Ga0307415_1013605901	3300032126	Rhizosphere	MPRVPYYAQAFSPLPGRCFRLVSHHGEAGPTHCPEPVAWRGSWRAPNGRRYRIEACEGHRPPPEEGVGPTT
Ga0307415_1016269312	3300032126	Rhizosphere	SWWIIRVMTHSPTPYYAEVFAPMAGRCFGMVSGGSEGGGPTHCPEPPTWRGTFRARNGRRYTVEACEGHRPPAGSGREGTGG
Ga0307415_1021616372	3300032126	Rhizosphere	YAEAFSPLPGRCFRLVAHPGEAGPTHCLEPVAWRGSWRAPNGRRYRIEACEGHRPPPEEGVGPTT
Ga0268251_104279951	3300032159	Agave	MPGAPYYAEAFSPLPGRCFRMVAHPGEAGPTYCPEPVVWRGSWRAPSGRRYRIEACEGHRPPPGRGSGPTA
Ga0334913_025034_3_236	3300034172	Sub-Biocrust Soil	MSYPAVVPAAPYYAEAFSPLPGRCFRLVAHAGEAGPTHCLEPVTWRGSWRAPNGRRYRIEACEGHRPLEEGARCLDAI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071769

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences