Metagenome Family F071715

Basic Information
Family ID	F071715
Family Type	Metagenome
Number of Sequences	122
Average Sequence Length	50 residues
Representative Sequence	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGPGYGYY
Number of Associated Samples	110
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	97.17 %
% of genes near scaffold ends (potentially truncated)	86.07 %
% of genes from short scaffolds (< 2000 bps)	75.41 %
Associated GOLD sequencing projects	106
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (59.836 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (9.016 % of family members)
Environment Ontology (ENVO)	Unclassified (29.508 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.262 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 42.22% β-sheet: 11.11% Coil/Unstructured: 46.67%
Feature Viewer

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Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF04964	Flp_Fap	52.46
PF04392	ABC_sub_bind	3.28
PF02735	Ku	3.28
PF12071	DUF3551	1.64
PF09140	MipZ	1.64
PF03350	UPF0114	1.64
PF01575	MaoC_dehydratas	0.82
PF00089	Trypsin	0.82
PF12706	Lactamase_B_2	0.82
PF02518	HATPase_c	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	52.46
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	3.28
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	3.28
COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	Cell cycle control, cell division, chromosome partitioning [D]	1.64
COG2862	Uncharacterized membrane protein YqhA	Function unknown [S]	1.64

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
All Organisms	root	All Organisms	40.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
cellular organisms	root	All Organisms → cellular organisms	40.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	36.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	32.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	28.69 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	15.57 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.46 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	13.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.46 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.46 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.64 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.46 %
Bradyrhizobium sp. ORS 278	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ORS 278	0.82 %
Rhizobium favelukesii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium favelukesii	0.82 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2067725004\|GPKC_F5V46DG03GGVME	Not Available	506	Open in IMG/M
2170459010\|GIO7OMY02ISENI	Not Available	533	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10000326	All Organisms → cellular organisms → Bacteria	10276	Open in IMG/M
3300000891\|JGI10214J12806_10830610	Not Available	572	Open in IMG/M
3300004114\|Ga0062593_100519140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1110	Open in IMG/M
3300004480\|Ga0062592_100674825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	894	Open in IMG/M
3300005162\|Ga0066814_10007779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1236	Open in IMG/M
3300005173\|Ga0066822_1002114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	945	Open in IMG/M
3300005185\|Ga0066811_1008843	Not Available	710	Open in IMG/M
3300005332\|Ga0066388_100826427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1515	Open in IMG/M
3300005332\|Ga0066388_103460844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	806	Open in IMG/M
3300005343\|Ga0070687_101423912	Not Available	519	Open in IMG/M
3300005364\|Ga0070673_100367744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1280	Open in IMG/M
3300005364\|Ga0070673_100807839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	866	Open in IMG/M
3300005445\|Ga0070708_100882210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	840	Open in IMG/M
3300005545\|Ga0070695_100409661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1030	Open in IMG/M
3300005616\|Ga0068852_100321107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1504	Open in IMG/M
3300005713\|Ga0066905_100831112	Not Available	803	Open in IMG/M
3300005834\|Ga0068851_10962525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	537	Open in IMG/M
3300005842\|Ga0068858_100281872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1583	Open in IMG/M
3300006050\|Ga0075028_101033249	Not Available	513	Open in IMG/M
3300006163\|Ga0070715_10036413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2029	Open in IMG/M
3300006172\|Ga0075018_10180594	Not Available	991	Open in IMG/M
3300006852\|Ga0075433_11492417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	584	Open in IMG/M
3300006854\|Ga0075425_101066548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	921	Open in IMG/M
3300006914\|Ga0075436_100347845	Not Available	1068	Open in IMG/M
3300006914\|Ga0075436_101210155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium favelukesii	570	Open in IMG/M
3300006954\|Ga0079219_10905950	All Organisms → cellular organisms → Bacteria → Proteobacteria	714	Open in IMG/M
3300009093\|Ga0105240_10751352	Not Available	1060	Open in IMG/M
3300009098\|Ga0105245_11018875	Not Available	873	Open in IMG/M
3300009101\|Ga0105247_11124893	Not Available	621	Open in IMG/M
3300009147\|Ga0114129_10713572	Not Available	1287	Open in IMG/M
3300009162\|Ga0075423_10186389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2177	Open in IMG/M
3300010359\|Ga0126376_10686100	Not Available	983	Open in IMG/M
3300010360\|Ga0126372_10006773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5723	Open in IMG/M
3300010362\|Ga0126377_12784957	Not Available	563	Open in IMG/M
3300010366\|Ga0126379_10041165	All Organisms → cellular organisms → Bacteria	3721	Open in IMG/M
3300010371\|Ga0134125_12601036	Not Available	550	Open in IMG/M
3300010375\|Ga0105239_10434759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1488	Open in IMG/M
3300010375\|Ga0105239_11544179	Not Available	767	Open in IMG/M
3300010397\|Ga0134124_11959402	Not Available	622	Open in IMG/M
3300010401\|Ga0134121_10345822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1329	Open in IMG/M
3300011119\|Ga0105246_10278161	All Organisms → cellular organisms → Bacteria	1341	Open in IMG/M
3300012488\|Ga0157343_1028672	Not Available	549	Open in IMG/M
3300012507\|Ga0157342_1041551	Not Available	617	Open in IMG/M
3300012902\|Ga0157291_10009333	Not Available	1681	Open in IMG/M
3300012957\|Ga0164303_10099282	Not Available	1437	Open in IMG/M
3300012960\|Ga0164301_10208980	All Organisms → cellular organisms → Bacteria → Proteobacteria	1251	Open in IMG/M
3300012961\|Ga0164302_10102861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1583	Open in IMG/M
3300012971\|Ga0126369_12876206	Not Available	564	Open in IMG/M
3300012971\|Ga0126369_13511142	Not Available	514	Open in IMG/M
3300013307\|Ga0157372_10965090	Not Available	988	Open in IMG/M
3300014321\|Ga0075353_1049245	Not Available	871	Open in IMG/M
3300014326\|Ga0157380_10397773	Not Available	1306	Open in IMG/M
3300014969\|Ga0157376_12669008	Not Available	539	Open in IMG/M
3300016294\|Ga0182041_11930802	Not Available	549	Open in IMG/M
3300017944\|Ga0187786_10015941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1921	Open in IMG/M
3300017947\|Ga0187785_10043721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1660	Open in IMG/M
3300018064\|Ga0187773_10006733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4723	Open in IMG/M
3300018064\|Ga0187773_10401516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	794	Open in IMG/M
3300018064\|Ga0187773_10472136	Not Available	742	Open in IMG/M
3300021445\|Ga0182009_10478340	Not Available	654	Open in IMG/M
3300021953\|Ga0213880_10159160	Not Available	620	Open in IMG/M
3300022694\|Ga0222623_10353983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300022737\|Ga0247747_1004920	All Organisms → cellular organisms → Bacteria	1285	Open in IMG/M
3300022883\|Ga0247786_1007428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2019	Open in IMG/M
3300023064\|Ga0247801_1000544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4642	Open in IMG/M
3300025885\|Ga0207653_10051484	All Organisms → cellular organisms → Bacteria	1371	Open in IMG/M
3300025916\|Ga0207663_10668278	Not Available	821	Open in IMG/M
3300025917\|Ga0207660_10032550	All Organisms → cellular organisms → Bacteria → Proteobacteria	3599	Open in IMG/M
3300025923\|Ga0207681_10188100	All Organisms → cellular organisms → Bacteria → Proteobacteria	1578	Open in IMG/M
3300025924\|Ga0207694_11879963	Not Available	502	Open in IMG/M
3300025927\|Ga0207687_10754634	Not Available	828	Open in IMG/M
3300025930\|Ga0207701_10053003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ORS 278	3725	Open in IMG/M
3300025930\|Ga0207701_10069096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3209	Open in IMG/M
3300025931\|Ga0207644_10035711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3484	Open in IMG/M
3300025937\|Ga0207669_10437522	Not Available	1033	Open in IMG/M
3300025937\|Ga0207669_10689130	Not Available	839	Open in IMG/M
3300025942\|Ga0207689_11703945	Not Available	522	Open in IMG/M
3300025960\|Ga0207651_10258894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1427	Open in IMG/M
3300026035\|Ga0207703_10247073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1606	Open in IMG/M
3300026078\|Ga0207702_12179551	Not Available	543	Open in IMG/M
3300026118\|Ga0207675_100016357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6924	Open in IMG/M
3300026767\|Ga0207469_100463	Not Available	788	Open in IMG/M
3300026769\|Ga0207492_102090	Not Available	639	Open in IMG/M
3300026940\|Ga0207521_103551	Not Available	563	Open in IMG/M
3300027313\|Ga0207780_1050726	Not Available	710	Open in IMG/M
3300027479\|Ga0207636_1002624	Not Available	684	Open in IMG/M
3300027516\|Ga0207761_1028710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1100	Open in IMG/M
3300027876\|Ga0209974_10314573	Not Available	602	Open in IMG/M
3300027907\|Ga0207428_10123291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1985	Open in IMG/M
3300027907\|Ga0207428_11313601	Not Available	501	Open in IMG/M
3300028807\|Ga0307305_10246362	Not Available	817	Open in IMG/M
3300028819\|Ga0307296_10315112	Not Available	853	Open in IMG/M
3300028875\|Ga0307289_10254243	Not Available	723	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10225965	Not Available	527	Open in IMG/M
3300031892\|Ga0310893_10095831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1080	Open in IMG/M
3300031943\|Ga0310885_10404572	Not Available	727	Open in IMG/M
3300032001\|Ga0306922_10542908	Not Available	1236	Open in IMG/M
3300032013\|Ga0310906_10091231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1644	Open in IMG/M
3300032179\|Ga0310889_10013711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2692	Open in IMG/M
3300032205\|Ga0307472_101690222	Not Available	625	Open in IMG/M
3300032211\|Ga0310896_10342299	Not Available	784	Open in IMG/M
3300032828\|Ga0335080_10364699	Not Available	1556	Open in IMG/M
3300033004\|Ga0335084_11014884	Not Available	835	Open in IMG/M
3300034818\|Ga0373950_0093356	Not Available	641	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.03%
Host-Associated	Host-Associated	31.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.57%
Plants	Host-Associated → Plants	31.97%
Aquatic	Environmental → Aquatic	2.46%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.95%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.02%
Sediment	Environmental → Aquatic → Sediment	2.46%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.39%
Loam	Environmental → Terrestrial → Soil → Loam	14.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.20%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.56%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.46%
Sand	Environmental → Terrestrial → Soil → Sand	0.82%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.39%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.66%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.20%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.10%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.10%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.10%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.46%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.82%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.02%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	6.56%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.10%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.10%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.10%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.10%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.28%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.46%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.46%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.46%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.46%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.64%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.64%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.64%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.64%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.64%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.64%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.64%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.82%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.82%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.82%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.82%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.82%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.82%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725004	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
2170459012	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO1O1 lysis Rhizosphere grass	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005173	Soil and rhizosphere microbial communities from Laval, Canada - mgHMA	Environmental	Open in IMG/M
3300005185	Soil and rhizosphere microbial communities from Laval, Canada - mgHPB	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012488	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.yng.030610	Host-Associated	Open in IMG/M
3300012507	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610	Host-Associated	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014321	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D1	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021953	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022737	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S094-311B-5	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300023064	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S001-104B-6	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026752	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4w-11 (SPAdes)	Environmental	Open in IMG/M
3300026767	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A1-11 (SPAdes)	Environmental	Open in IMG/M
3300026769	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A1w-11 (SPAdes)	Environmental	Open in IMG/M
3300026940	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A1-12 (SPAdes)	Environmental	Open in IMG/M
3300027313	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 45 (SPAdes)	Environmental	Open in IMG/M
3300027479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A4w-11 (SPAdes)	Environmental	Open in IMG/M
3300027516	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34 (SPAdes)	Environmental	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
GPKC_08546760	2067725004	Soil	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGPGYYGGYYDGYDYGPRYR
F62_09367690	2170459010	Grass Soil	MKKLAIGLLAAAGIAMSVPANAQGVWVGAGPVGVGVGVGPSWGYYDRGYAPGYRSY
N56_03667080	2170459012	Grass Soil	MRKLAIGLLTATGLAATGLVALSVPASAQGVWVGAGPVGVGVGVGPGWVIVMVLWPGYRS
AF_2010_repII_A1DRAFT_100003261	3300000597	Forest Soil	MKKLAIGLLAAAGIAMSVPANAQGVWVGAGPVGVGVGVGPGWGYYDRGYYG
JGI10214J12806_108306102	3300000891	Soil	MRKLAIGILAAAGVALSMPASAQGVWIGAGPVGVGVGVGPGYG
Ga0062593_1005191403	3300004114	Soil	MRKLAIGILAAAGVALSMPASAQGVWIGAGPVGVGVGVGP
Ga0062595_1014160111	3300004479	Soil	MRKLVIGLLTATGLAATGLAATGVALSVPASAQGVFVGAGPVGVGVGVGPGWGYGPG
Ga0062592_1006748253	3300004480	Soil	MRKLAIGILAAAGVVLSMPASAQGVWIGAGPVGVGVGVGP
Ga0066814_100077793	3300005162	Soil	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGPSYGYYNGYYDYGP
Ga0066822_10021143	3300005173	Soil	MKKLAIGLLAAAGIAMSIPANAQGVWVGAGPVGVGVGVGPSYGYDRGYYGHGYGPGYRSYAY
Ga0066811_10088431	3300005185	Soil	MKKLAIGLLAAAGIAMSVPANAQGVWVGAGPVGVGVGVGPGYGYGYDRGY
Ga0070683_1009385511	3300005329	Corn Rhizosphere	MRKSVIGLLTATGLAATGLIATGVAPASAQGVYVGAGPVGVGVGVGPGWGYRDRYYGPG
Ga0066388_1008264273	3300005332	Tropical Forest Soil	MKKLAIGLLAAAGIAMSVPANAQGVWVGAGPVGVGVGVGPGWGYYDRGYY
Ga0066388_1034608442	3300005332	Tropical Forest Soil	MRKLAIGLLAAAGIALSLPANAQGVWVGAGPVGVGVGVGPGYGYHDGYYGPGYRSYAYDDGYYYGR
Ga0070687_1014239122	3300005343	Switchgrass Rhizosphere	MKKLAIGLLAAAGIAMSVPASAQGVWVGAGPVGVGVGVGPSYGYDRG
Ga0070673_1003677441	3300005364	Switchgrass Rhizosphere	MKKLAIGLLAAAGIAMSIPANAQGVWVGAGPVGVGVGVGPSYGYDRG
Ga0070673_1008078391	3300005364	Switchgrass Rhizosphere	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGPGYGYYDGYDYGPRYRSYA
Ga0070713_1002154051	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MRKSVIGLLTATGLAATGLIATGVAPASAQGVFVGAGPVGVGVGVGPGWGYRDRYYGPGY
Ga0070694_1006827531	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MRKLAIGLLTATGLAATGLAATGVALSVPASAQGVFVGAGPVGVG
Ga0070708_1008822101	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MEIPMRKLAIGLLAAAGIAMSVPASAQGVWVGAGPVGVGVGV
Ga0070697_1007235321	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MRKLAIGLLTATGLAATGLAATGVALSVPASAQGVFVGAGPVGVGVGVG
Ga0070695_1004096611	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MKKLAIGLLAAAGIAMSIPANAQGVWVGAGPVGVGVGVGPGYGYYDRGYSPGYR
Ga0068852_1003211071	3300005616	Corn Rhizosphere	MKKLAIGLLAAAGIAMSVPASAPGVWVGAGPVGVGVGVGP
Ga0066905_1008311124	3300005713	Tropical Forest Soil	MKKLAIVLLAAAGVALAVPASAQGVWVGAGPVGVGVGVGPGWGYY
Ga0068851_109625252	3300005834	Corn Rhizosphere	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGPGYGYYDGYDYGPRYRSYAYD
Ga0068858_1002818721	3300005842	Switchgrass Rhizosphere	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVG
Ga0070717_106159491	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRKSVIGLLTATGLAATGLIATGVAPASAQGVWVGAGPVGVGVGVG
Ga0075028_1010332491	3300006050	Watersheds	MRKLAIGLLAVAGIAMSVPASAQGVYVGAGPVGVGVGPGYGYRDGYYRDGYYGH
Ga0070715_100364135	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MKKLAIGLLAAAGIAMSIPANAQGVWVGAGPVGVGVGVGPSYGYDRGY
Ga0075018_101805941	3300006172	Watersheds	MKKLAIGILAAAGIAMSMPASAQGVYVGAGPVGVGVGVG
Ga0075433_114924171	3300006852	Populus Rhizosphere	MRKLAIGILAAAGVAMSVPASAQGVWIGAGPVGVGVGVGPGYGYYDGY
Ga0075425_1010665481	3300006854	Populus Rhizosphere	MRKLAIGILAAAGIAVSMPANAQGVWIGAGPVGVGVGVGPGYGYYDGYDYGPRYRSYAYDDGYTYRRHC
Ga0075436_1003478451	3300006914	Populus Rhizosphere	MKKLAIALLAAAGVALSVPASAQGVWVGAGLVGVGVGPGWGYYDGYYGPRYRSYAYDDGYSYRRHCRI
Ga0075436_1012101551	3300006914	Populus Rhizosphere	MRKPKWKLAIGILAAAGIAATLMAVPANAQGVWVGAGPVGVGVGVGPSWGYYDHDYYGPAYRSYAYD
Ga0079219_109059502	3300006954	Agricultural Soil	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGPGWGYYDGYYDYGPRYRSYAYDDG
Ga0105240_107513523	3300009093	Corn Rhizosphere	MRKPKRKLAIGILAAAGIAATLMAVPANAQGVWVGAGPVGVGVGVGPSWGYYDHDYYGPAYRSYAYDDDDYAYVG
Ga0105245_110188751	3300009098	Miscanthus Rhizosphere	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGVGPGYGYYDGYYDYGPRYR
Ga0105247_111248932	3300009101	Switchgrass Rhizosphere	MKKLAIGLLAAAGIAMSIPASAQGVWVGAGPVGVGVGVGP
Ga0114129_107135724	3300009147	Populus Rhizosphere	MKKLAIALLAAAGVALSVPASAQGVWVGAGPVGVGVGPGWGYYDGYYGPRYRSYAYDDG
Ga0075423_101863891	3300009162	Populus Rhizosphere	MKKLAIGLLAAAGIAMSIPANAQGVWVGAGPVGVGVGVGPGYGYDRGYYGHGY
Ga0126376_106861001	3300010359	Tropical Forest Soil	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGPGYGYYNGYDYGPRYRSYAYDNG
Ga0126372_100067731	3300010360	Tropical Forest Soil	MRFHQSGNKEDDMKKLAIGLLAAAGIAMSVPANAQGVWVGAGPVGVGVGVGPGWGYYDRGYYGPGY
Ga0126377_127849571	3300010362	Tropical Forest Soil	MRKLAIGLLAAAGVALSVPASAQGVWVGAGPVGVGVGVG
Ga0126379_100411651	3300010366	Tropical Forest Soil	MRKLAIGLLAAAGVALSVPASAQGVWVGAGPVGVGVGVGPGWGYYDRGYRS
Ga0134125_126010362	3300010371	Terrestrial Soil	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGPGYGYYDGYD
Ga0105239_104347596	3300010375	Corn Rhizosphere	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGPGYGYYDGYDYGPRYRSYAYDDGYAYRR
Ga0105239_108905231	3300010375	Corn Rhizosphere	MRKLAIGLLTATGLAATGLAATGVALSVPASAQGVF
Ga0105239_115441791	3300010375	Corn Rhizosphere	MKKLAIGLLAAAGIAMSVPANAQGVWVGAGPVGVGVGPGWGYYDRGYYGPGYRSYAYD
Ga0134124_119594021	3300010397	Terrestrial Soil	MKKLAIGLLAAAGIAMSIPANAQGVWVGAGPVGVGVGVGP
Ga0134121_103458223	3300010401	Terrestrial Soil	MKKLAIGLLAAAGIAMSVPANAQGVWVGAGPVGVGVGPGWGYYDR
Ga0105246_102781611	3300011119	Miscanthus Rhizosphere	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGPGYGYSDGYDYGPRYRSYA
Ga0157343_10286721	3300012488	Arabidopsis Rhizosphere	MKKLAIGLLAAAGIAMSIPANAQGVWVGAGPVGVGVGVGPGYGYYDRGYAPGYRSY
Ga0157342_10415511	3300012507	Arabidopsis Rhizosphere	MKKLAIGLLAAAGIAMSIPANAQGVWVGAGPVGVGVGVGPGYGYYDRGYGPGYRSYAYDN
Ga0157291_100093331	3300012902	Soil	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGPGYYGGGYYG
Ga0164298_103356302	3300012955	Soil	MRKLAIGLLTAIGLAATSLAATGVALSVPASAQGVFVGA
Ga0164303_100992821	3300012957	Soil	MRKLAIGLLAAAGVALSVSASVPASAQGVYVGAGPVGVGVGVG
Ga0164303_107139271	3300012957	Soil	LNKEGFMRKSVIGLLTATGLAATGLIATGVAPASAQGVYVGAGPVGVGVGV
Ga0164301_102089804	3300012960	Soil	MKKLAIGLLAAAGIAMSVPANAQGVWVGAGPVGVGVGVGPGWGYYDRGYYGPGYRS
Ga0164302_101028614	3300012961	Soil	MKKLAIGLLAAAGIAMSVPANAQGVWVGAGPVGVGVGVGPG
Ga0126369_128762061	3300012971	Tropical Forest Soil	MRFQGVHWKEEPMRKLAIGLLAAAGVALSIPANAQGVWVGAGPVG
Ga0126369_135111421	3300012971	Tropical Forest Soil	MRFQSVHWKEELMRKLAIGLLAAAGVALSIPANAQGVWVGAGPVGVG
Ga0164308_116973251	3300012985	Soil	MEGFMRKLVIGLLTATGLAATGLAATGVALSVPASAQGVFVGAGPVGV
Ga0164305_100911891	3300012989	Soil	MEGFMRKLVIGLLTATGLAATGLAATGVALSVPASAQGVFVGAGPVGVGVGVGPGWGYGP
Ga0157372_109650901	3300013307	Corn Rhizosphere	MKKLAIGLLAAAGIAMSVPASAQGVWVGAGPVGVGVG
Ga0075353_10492451	3300014321	Natural And Restored Wetlands	MRKLAIGILPAAGVALSVPANAQGVWVGAGPVGVGVGV
Ga0157380_103977731	3300014326	Switchgrass Rhizosphere	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGPGYGYYDGYY
Ga0157376_126690082	3300014969	Miscanthus Rhizosphere	MKKLAIGLLAAAGIAMSVPASAQGVWVGAGPVGVGVGVGPSYGYDRGHYGHGYG
Ga0132255_1032842441	3300015374	Arabidopsis Rhizosphere	MRKLAIGLLTATGLAATGLAATGVALSVPASAQGVFVGAGPVG
Ga0182041_119308021	3300016294	Soil	MRKLAIGLLAAAGIALSVPASAQGVWVGAGPVGVGVGVGPGWGYYDRGYYGPGYRSYAYD
Ga0187786_100159412	3300017944	Tropical Peatland	MRKLAIGILAAAGIALSAPANAQGVWVGAGPVGVGVGPAWGSYYDLSQLRLH
Ga0187785_100437211	3300017947	Tropical Peatland	MKKLAIGLLAAAGIAMSVPANAQGVWVGAGPVGVGVGPGWGGYYDRGYYGPGY
Ga0187773_100067338	3300018064	Tropical Peatland	MRKLAIGLLATAGIALSLPANAQGVWVGAGPVGVGVGVG
Ga0187773_104015162	3300018064	Tropical Peatland	MRKLAIGLLAAAGVALSVPASAQGVWVGAGPVGVGVGVGPGYGYYGPGYRS
Ga0187773_104721361	3300018064	Tropical Peatland	MRKLAIGILAAAGIALSAPANAQGVWVGAGPVGVGVGPAWGSYYDGYYGPGYHSYAYADDDFAYVG
Ga0182009_104783401	3300021445	Soil	MRTSATRKLAIGILAAAGIAAAAPATAQGVWVGAGPVGVGVGV
Ga0213880_101591602	3300021953	Exposed Rock	MRKIAFGMIAAAGLAFAAPASAQGVYVGAGPVGVGVGVAPYPYYDSYAYAPGP
Ga0222623_103539831	3300022694	Groundwater Sediment	MKKLAIGLLAAAGIAMSVPASAQGVWVGAGPVGVGVGVGPGWGYYDR
Ga0247747_10049204	3300022737	Soil	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVCPG
Ga0247786_10074281	3300022883	Soil	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVG
Ga0247801_10005448	3300023064	Soil	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGGG
Ga0207653_100514841	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGPGYGYY
Ga0207663_106682782	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VRTSATRKLAIGILAAAGIAMSVPASAQGVWVGAGPVGVGVGPTYGGYYDH
Ga0207660_100325506	3300025917	Corn Rhizosphere	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGVGPGYG
Ga0207681_101881001	3300025923	Switchgrass Rhizosphere	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGPGYGYYDGY
Ga0207694_118799631	3300025924	Corn Rhizosphere	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVG
Ga0207687_107546341	3300025927	Miscanthus Rhizosphere	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGPGYG
Ga0207700_114654321	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MRKSVIGLLTATGLAATGLIATGVAPASAQGVFVGAGPVGVGVGVGPGWG
Ga0207701_100530036	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGV
Ga0207701_100690968	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGPGYGYYDGYDYGPRYRSYAYDDGYTYR
Ga0207644_100357111	3300025931	Switchgrass Rhizosphere	MKKLAIGLLAAAGIAMSVPASAQGVWVGAGPVGVGVGVGPSYGYDR
Ga0207669_104375221	3300025937	Miscanthus Rhizosphere	MKKLAIGLLAAAGIAMSIPANAQGVWVGAGPVGVG
Ga0207669_106891301	3300025937	Miscanthus Rhizosphere	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGP
Ga0207689_117039451	3300025942	Miscanthus Rhizosphere	MKKLAIGLLAAAGIAMSIPANAQGVWVGAGPVGVGVGV
Ga0207651_102588941	3300025960	Switchgrass Rhizosphere	MKKLAIGLLAAAGIAMSIPANAQGVWVGAGPVGVGVGVGPSYGYDGGYYGH
Ga0207703_102470736	3300026035	Switchgrass Rhizosphere	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGPGYGYSDG
Ga0207702_121795511	3300026078	Corn Rhizosphere	MKKLAIGLLAAAGIAMSIPANAQGVWVGAGPVGVGVGPSYGYDRGYYGHGYGPG
Ga0207675_1000163571	3300026118	Switchgrass Rhizosphere	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGPG
Ga0207473_1021211	3300026752	Soil	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGVPVGRGATIGVDGA
Ga0207469_1004631	3300026767	Soil	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGPGYYG
Ga0207492_1020902	3300026769	Soil	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGTGYYGGYYDGYDYGPRYRSYA
Ga0207521_1035511	3300026940	Soil	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGPGYY
Ga0207780_10507261	3300027313	Tropical Forest Soil	MRKLAIGILAAAGVALSVPASAQGVWVGAGPFGVGVGVGPSYGYYEPDYYGPAYRTYAYDDD
Ga0207636_10026241	3300027479	Soil	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGPGYYGGGY
Ga0207761_10287101	3300027516	Tropical Forest Soil	MRKLAIGILAAAGVALSVPASAQGVWVGAGPFGVGVGVGPSYGYYEPDYYGPAYRTYAYDDDY
Ga0209974_103145731	3300027876	Arabidopsis Thaliana Rhizosphere	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGPGYGYYDGYYD
Ga0207428_101232916	3300027907	Populus Rhizosphere	MRKLAIGILAAAGVAMSVPASAQGVWIGAGPVGVGVGVGPGYGYYDGYYDHGPRYRSYAYDSDYGY
Ga0207428_113136011	3300027907	Populus Rhizosphere	MKKLAIGLLAAAGIAMSIPANAQGVWVGAGPVGVGVGVGPSYGYDRGYYGHGYGPGYRSYAYD
Ga0307305_102463622	3300028807	Soil	MKKLAIGLLAAAGIAMSVPANAQGVWVGAGPVGVGVGVGPSWSYYDR
Ga0307296_103151122	3300028819	Soil	MKKLAIGLLAAAGIAMSVPANAQGVWVGAGPVGVGVGVGPSWSYYDRGYA
Ga0307289_102542432	3300028875	Soil	MKKLAIGLLAAVGIAMSVPANAQGVWVGAGPVGVGVGVGPGWGYYDRGYGPGYRSYAYDD
(restricted) Ga0255310_102259651	3300031197	Sandy Soil	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGVGVGPGYGYYDGYYDYGPRYRSY
Ga0307468_1006603394	3300031740	Hardwood Forest Soil	MRKLAIGLLTATGLAATGLVALSAPASAQGVFVGAGPVGVGVGVGPGWG
Ga0310893_100958313	3300031892	Soil	MKKLAIGLLAAAGIAMSIPANAQGVWVGAGPVGVGVGVGVGPGY
Ga0310885_104045722	3300031943	Soil	MKKLAIGLLAAAGIAMSIPANAQGVWVGAGPVGVGVGVGPGYGYYDRGYSP
Ga0306922_105429083	3300032001	Soil	MRKLAIGLLAAAGIALSVPASAQGVWVGAGPVGVGPGWGYYDRGYYGPGYRSYAYDGAY
Ga0310906_100912313	3300032013	Soil	MRKLAIGVLAAAGVALSVPASAQGVWIGAGPVGVGVGV
Ga0310889_100137115	3300032179	Soil	MRKLAIGILAAAGVALSVPASAQGVWIGAGPVGVGVGVGPGYGYYDGYYDYGPRYRSYAYDDG
Ga0307472_1016902222	3300032205	Hardwood Forest Soil	MRKLAIGILAAAGIAVSMPANAQGVWIGAGPVGVGVGVGPGYGYYDGYYGPRYRS
Ga0310896_103422992	3300032211	Soil	MRKLAIGVLAAAGVALSVPASAQGVWIGAGPVGVGVGVGPSYGYYN
Ga0335080_103646991	3300032828	Soil	MRKLAIGLLAAAGVALSVPASAQGVWVGAGPVGVGVGVGPGYSYYGPGYRSYAYD
Ga0335084_110148842	3300033004	Soil	MRKLAIGLLAAAGVALSLPANAQGVWVGAGPVGVGVGVGPGYGYYDRDYYGPGYRS
Ga0373950_0093356_498_641	3300034818	Rhizosphere Soil	MKKLAIGLLAAAGIAMSIPANAQGVWVGAGPVGVGVGVGPGYGYYDRG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters