Metagenome / Metatranscriptome Family F071681

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F071681
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	43 residues
Representative Sequence	AAHEDGRLVLTVTGADPGRVRDAVAGFALTVRSGPSPAAQTTNK
Number of Associated Samples	102
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	92.62 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (99.180 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (22.131 % of family members)
Environment Ontology (ENVO)	Unclassified (20.492 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.082 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.50% β-sheet: 8.33% Coil/Unstructured: 79.17%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF01494	FAD_binding_3	94.26
PF13564	DoxX_2	3.28
PF07992	Pyr_redox_2	0.82
PF13368	Toprim_C_rpt	0.82
PF07167	PhaC_N	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	188.52
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	94.26
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	94.26
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	94.26
COG3243	Poly-beta-hydroxybutyrate synthase	Lipid transport and metabolism [I]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.18 %
Unclassified	root	N/A	0.82 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.18 %
Unclassified	root	N/A	0.82 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.18 %
Unclassified	root	N/A	0.82 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	99.18 %
Unclassified	root	N/A	0.82 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	14.75 %
Unclassified	root	N/A	0.82 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	10.66 %
Unclassified	root	N/A	0.82 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	3.28 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.82 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.82 %
Unclassified	root	N/A	0.82 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.28 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.82 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.82 %
Unclassified	root	N/A	0.82 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.28 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.82 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.82 %
Unclassified	root	N/A	0.82 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.28 %
Streptomyces afghaniensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces afghaniensis	0.82 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.82 %
Unclassified	root	N/A	0.82 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.28 %
Streptomyces afghaniensis 772	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces afghaniensis → Streptomyces afghaniensis 772	0.82 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.82 %
Unclassified	root	N/A	0.82 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459005\|F1BAP7Q02JNL2U	All Organisms → cellular organisms → Bacteria → Terrabacteria group	555	Open in IMG/M
3300001356\|JGI12269J14319_10188726	All Organisms → cellular organisms → Bacteria → Terrabacteria group	825	Open in IMG/M
3300003218\|JGI26339J46600_10067950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	918	Open in IMG/M
3300003218\|JGI26339J46600_10115692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	646	Open in IMG/M
3300003659\|JGI25404J52841_10031065	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1142	Open in IMG/M
3300004643\|Ga0062591_101610282	All Organisms → cellular organisms → Bacteria → Terrabacteria group	654	Open in IMG/M
3300004977\|Ga0072329_1371008	All Organisms → cellular organisms → Bacteria → Terrabacteria group	992	Open in IMG/M
3300005164\|Ga0066815_10012071	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1086	Open in IMG/M
3300005327\|Ga0070658_10695344	All Organisms → cellular organisms → Bacteria → Terrabacteria group	882	Open in IMG/M
3300005366\|Ga0070659_100837069	All Organisms → cellular organisms → Bacteria → Terrabacteria group	801	Open in IMG/M
3300005435\|Ga0070714_101260852	All Organisms → cellular organisms → Bacteria → Terrabacteria group	721	Open in IMG/M
3300005435\|Ga0070714_102038119	All Organisms → cellular organisms → Bacteria → Terrabacteria group	559	Open in IMG/M
3300005436\|Ga0070713_101561727	All Organisms → cellular organisms → Bacteria → Terrabacteria group	640	Open in IMG/M
3300005459\|Ga0068867_101132205	All Organisms → cellular organisms → Bacteria → Terrabacteria group	716	Open in IMG/M
3300005541\|Ga0070733_10626250	All Organisms → cellular organisms → Bacteria → Terrabacteria group	722	Open in IMG/M
3300005545\|Ga0070695_100246341	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1299	Open in IMG/M
3300005614\|Ga0068856_101685131	All Organisms → cellular organisms → Bacteria → Terrabacteria group	646	Open in IMG/M
3300005614\|Ga0068856_101946590	All Organisms → cellular organisms → Bacteria → Terrabacteria group	598	Open in IMG/M
3300005834\|Ga0068851_10660728	All Organisms → cellular organisms → Bacteria → Terrabacteria group	640	Open in IMG/M
3300006028\|Ga0070717_10133762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2134	Open in IMG/M
3300006028\|Ga0070717_10493982	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1106	Open in IMG/M
3300006028\|Ga0070717_11138461	All Organisms → cellular organisms → Bacteria → Terrabacteria group	710	Open in IMG/M
3300006086\|Ga0075019_11048457	All Organisms → cellular organisms → Bacteria → Terrabacteria group	528	Open in IMG/M
3300006102\|Ga0075015_100559009	All Organisms → cellular organisms → Bacteria → Terrabacteria group	665	Open in IMG/M
3300006102\|Ga0075015_100934362	All Organisms → cellular organisms → Bacteria → Terrabacteria group	528	Open in IMG/M
3300006163\|Ga0070715_10661451	All Organisms → cellular organisms → Bacteria → Terrabacteria group	619	Open in IMG/M
3300006173\|Ga0070716_100813395	All Organisms → cellular organisms → Bacteria → Terrabacteria group	724	Open in IMG/M
3300006173\|Ga0070716_100833958	All Organisms → cellular organisms → Bacteria → Terrabacteria group	716	Open in IMG/M
3300006237\|Ga0097621_100345741	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1321	Open in IMG/M
3300006354\|Ga0075021_10788287	All Organisms → cellular organisms → Bacteria → Terrabacteria group	613	Open in IMG/M
3300006755\|Ga0079222_10764204	All Organisms → cellular organisms → Bacteria → Terrabacteria group	780	Open in IMG/M
3300006755\|Ga0079222_12506560	All Organisms → cellular organisms → Bacteria → Terrabacteria group	518	Open in IMG/M
3300006804\|Ga0079221_10709405	All Organisms → cellular organisms → Bacteria → Terrabacteria group	702	Open in IMG/M
3300006893\|Ga0073928_10105704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2351	Open in IMG/M
3300009523\|Ga0116221_1089406	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1371	Open in IMG/M
3300009525\|Ga0116220_10073577	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1435	Open in IMG/M
3300009551\|Ga0105238_13037744	All Organisms → cellular organisms → Bacteria → Terrabacteria group	504	Open in IMG/M
3300009624\|Ga0116105_1053487	All Organisms → cellular organisms → Bacteria → Terrabacteria group	933	Open in IMG/M
3300009683\|Ga0116224_10179263	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1017	Open in IMG/M
3300009683\|Ga0116224_10433539	All Organisms → cellular organisms → Bacteria → Terrabacteria group	626	Open in IMG/M
3300009683\|Ga0116224_10519833	All Organisms → cellular organisms → Bacteria → Terrabacteria group	568	Open in IMG/M
3300009698\|Ga0116216_10037614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3000	Open in IMG/M
3300009698\|Ga0116216_10233174	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1126	Open in IMG/M
3300009698\|Ga0116216_10656576	All Organisms → cellular organisms → Bacteria → Terrabacteria group	631	Open in IMG/M
3300009700\|Ga0116217_10272478	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1094	Open in IMG/M
3300009824\|Ga0116219_10466744	All Organisms → cellular organisms → Bacteria → Terrabacteria group	700	Open in IMG/M
3300009839\|Ga0116223_10285218	All Organisms → cellular organisms → Bacteria → Terrabacteria group	989	Open in IMG/M
3300010048\|Ga0126373_10530557	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1223	Open in IMG/M
3300010341\|Ga0074045_10442812	All Organisms → cellular organisms → Bacteria → Terrabacteria group	839	Open in IMG/M
3300010379\|Ga0136449_101988399	All Organisms → cellular organisms → Bacteria → Terrabacteria group	859	Open in IMG/M
3300010379\|Ga0136449_102360411	All Organisms → cellular organisms → Bacteria → Terrabacteria group	769	Open in IMG/M
3300010379\|Ga0136449_102739880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	698	Open in IMG/M
3300010876\|Ga0126361_10582875	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1100	Open in IMG/M
3300011084\|Ga0138562_1183359	All Organisms → cellular organisms → Bacteria → Terrabacteria group	538	Open in IMG/M
3300012285\|Ga0137370_11038672	All Organisms → cellular organisms → Bacteria → Terrabacteria group	504	Open in IMG/M
3300013306\|Ga0163162_11886590	All Organisms → cellular organisms → Bacteria → Terrabacteria group	684	Open in IMG/M
3300014199\|Ga0181535_10384787	All Organisms → cellular organisms → Bacteria → Terrabacteria group	824	Open in IMG/M
3300015374\|Ga0132255_105741527	All Organisms → cellular organisms → Bacteria → Terrabacteria group	525	Open in IMG/M
3300016387\|Ga0182040_10648868	All Organisms → cellular organisms → Bacteria → Terrabacteria group	859	Open in IMG/M
3300017823\|Ga0187818_10027332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2442	Open in IMG/M
3300017926\|Ga0187807_1079609	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1024	Open in IMG/M
3300017928\|Ga0187806_1372535	All Organisms → cellular organisms → Bacteria → Terrabacteria group	513	Open in IMG/M
3300017946\|Ga0187879_10651006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	586	Open in IMG/M
3300017955\|Ga0187817_10924442	All Organisms → cellular organisms → Bacteria → Terrabacteria group	558	Open in IMG/M
3300018001\|Ga0187815_10491683	All Organisms → cellular organisms → Bacteria → Terrabacteria group	525	Open in IMG/M
3300018043\|Ga0187887_10166984	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1315	Open in IMG/M
3300020002\|Ga0193730_1073391	All Organisms → cellular organisms → Bacteria → Terrabacteria group	972	Open in IMG/M
3300020580\|Ga0210403_10999696	All Organisms → cellular organisms → Bacteria → Terrabacteria group	654	Open in IMG/M
3300021374\|Ga0213881_10011574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3621	Open in IMG/M
3300021377\|Ga0213874_10153951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces afghaniensis → Streptomyces afghaniensis 772	804	Open in IMG/M
3300021475\|Ga0210392_10352788	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1065	Open in IMG/M
3300021560\|Ga0126371_11661204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	763	Open in IMG/M
3300025910\|Ga0207684_10410034	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1165	Open in IMG/M
3300025927\|Ga0207687_10286678	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1322	Open in IMG/M
3300025939\|Ga0207665_11191009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	608	Open in IMG/M
3300025986\|Ga0207658_10395489	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1214	Open in IMG/M
3300026142\|Ga0207698_10190095	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1828	Open in IMG/M
3300027003\|Ga0207722_1024844	All Organisms → cellular organisms → Bacteria → Terrabacteria group	655	Open in IMG/M
3300027035\|Ga0207776_1028291	All Organisms → cellular organisms → Bacteria → Terrabacteria group	720	Open in IMG/M
3300027039\|Ga0207855_1023414	All Organisms → cellular organisms → Bacteria → Terrabacteria group	839	Open in IMG/M
3300027497\|Ga0208199_1012372	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1971	Open in IMG/M
3300027604\|Ga0208324_1003059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6129	Open in IMG/M
3300027725\|Ga0209178_1176480	All Organisms → cellular organisms → Bacteria → Terrabacteria group	748	Open in IMG/M
3300027727\|Ga0209328_10129905	Not Available	768	Open in IMG/M
3300027853\|Ga0209274_10458893	All Organisms → cellular organisms → Bacteria → Terrabacteria group	659	Open in IMG/M
3300027854\|Ga0209517_10019543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6396	Open in IMG/M
3300027854\|Ga0209517_10386017	All Organisms → cellular organisms → Bacteria → Terrabacteria group	791	Open in IMG/M
3300027867\|Ga0209167_10481218	All Organisms → cellular organisms → Bacteria → Terrabacteria group	679	Open in IMG/M
3300028380\|Ga0268265_12121573	All Organisms → cellular organisms → Bacteria → Terrabacteria group	569	Open in IMG/M
3300028381\|Ga0268264_10881701	All Organisms → cellular organisms → Bacteria → Terrabacteria group	897	Open in IMG/M
3300028768\|Ga0307280_10022619	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1821	Open in IMG/M
3300030494\|Ga0310037_10204894	All Organisms → cellular organisms → Bacteria → Terrabacteria group	872	Open in IMG/M
3300030494\|Ga0310037_10324942	All Organisms → cellular organisms → Bacteria → Terrabacteria group	650	Open in IMG/M
3300030707\|Ga0310038_10223675	All Organisms → cellular organisms → Bacteria → Terrabacteria group	885	Open in IMG/M
3300031524\|Ga0302320_10412249	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1695	Open in IMG/M
3300031564\|Ga0318573_10292151	All Organisms → cellular organisms → Bacteria → Terrabacteria group	872	Open in IMG/M
3300031564\|Ga0318573_10784992	All Organisms → cellular organisms → Bacteria → Terrabacteria group	512	Open in IMG/M
3300031573\|Ga0310915_10123495	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1769	Open in IMG/M
3300031668\|Ga0318542_10699177	All Organisms → cellular organisms → Bacteria → Terrabacteria group	530	Open in IMG/M
3300031708\|Ga0310686_104357027	All Organisms → cellular organisms → Bacteria → Terrabacteria group	515	Open in IMG/M
3300031716\|Ga0310813_10548990	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1016	Open in IMG/M
3300031736\|Ga0318501_10202343	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1039	Open in IMG/M
3300031765\|Ga0318554_10253471	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1002	Open in IMG/M
3300031769\|Ga0318526_10348674	All Organisms → cellular organisms → Bacteria → Terrabacteria group	605	Open in IMG/M
3300031832\|Ga0318499_10435938	All Organisms → cellular organisms → Bacteria → Terrabacteria group	500	Open in IMG/M
3300031896\|Ga0318551_10312467	All Organisms → cellular organisms → Bacteria → Terrabacteria group	885	Open in IMG/M
3300031897\|Ga0318520_10392009	All Organisms → cellular organisms → Bacteria → Terrabacteria group	848	Open in IMG/M
3300031918\|Ga0311367_11261105	All Organisms → cellular organisms → Bacteria → Terrabacteria group	732	Open in IMG/M
3300031954\|Ga0306926_11643929	All Organisms → cellular organisms → Bacteria → Terrabacteria group	735	Open in IMG/M
3300032008\|Ga0318562_10364274	All Organisms → cellular organisms → Bacteria → Terrabacteria group	840	Open in IMG/M
3300032076\|Ga0306924_12180890	All Organisms → cellular organisms → Bacteria → Terrabacteria group	565	Open in IMG/M
3300032160\|Ga0311301_10041292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	11108	Open in IMG/M
3300032160\|Ga0311301_10314846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2489	Open in IMG/M
3300032160\|Ga0311301_12477218	All Organisms → cellular organisms → Bacteria → Terrabacteria group	581	Open in IMG/M
3300032770\|Ga0335085_10351255	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1728	Open in IMG/M
3300032805\|Ga0335078_12422676	All Organisms → cellular organisms → Bacteria → Terrabacteria group	545	Open in IMG/M
3300032828\|Ga0335080_10363656	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1559	Open in IMG/M
3300032828\|Ga0335080_11081621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	812	Open in IMG/M
3300032892\|Ga0335081_10494991	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1540	Open in IMG/M
3300032954\|Ga0335083_10765984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	777	Open in IMG/M
3300033158\|Ga0335077_11982849	All Organisms → cellular organisms → Bacteria → Terrabacteria group	541	Open in IMG/M
3300033289\|Ga0310914_10633729	All Organisms → cellular organisms → Bacteria → Terrabacteria group	962	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.07%
Host-Associated	Host-Associated	13.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.95%
Plants	Host-Associated → Plants	13.93%
Aquatic	Environmental → Aquatic	13.11%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.49%
Freshwater	Environmental → Aquatic → Freshwater	9.02%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.20%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.10%
Sediment	Environmental → Aquatic → Sediment	3.28%
Peat	Environmental → Terrestrial → Peat	1.64%
Roots	Host-Associated → Plants → Roots	1.64%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.82%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Loam	Environmental → Terrestrial → Soil → Loam	13.93%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.02%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.38%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.28%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.46%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.64%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.82%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.82%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.82%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.15%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.38%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.56%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.10%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.10%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.10%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.10%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.46%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.64%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.82%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.82%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.82%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.82%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	22.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.20%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.74%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.10%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.28%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.28%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.46%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.64%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.64%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.64%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.64%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.64%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.82%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.82%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.82%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.82%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.82%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.82%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.82%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.82%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.82%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.82%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.82%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.82%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300003659	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004977	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 67 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011084	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 47 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027003	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 26 (SPAdes)	Environmental	Open in IMG/M
3300027035	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 30 (SPAdes)	Environmental	Open in IMG/M
3300027039	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14 (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031918	III_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E41_06639360	2170459005	Grass Soil	RVTAAHEDGRLVLTVTGADPDRVRDAVTGFALTIRSGPSPAEQTTNK
JGI12269J14319_101887262	3300001356	Peatlands Soil	TVTGADPGRVRDAVAGFAVTVRCGPSPAEQTTSK*
JGI26339J46600_100679502	3300003218	Bog Forest Soil	ETDARVTAAHEDGRLVVTVTGADPGRVRDAIAGFALTVRSGPPPATQTTKE*
JGI26339J46600_101156922	3300003218	Bog Forest Soil	AHEDGRLVVTVTGADPGRVRDAVAGFALTVRCGPPPAPQTTSK*
JGI25404J52841_100310652	3300003659	Tabebuia Heterophylla Rhizosphere	YEDGRLVLTVTGAEPGQVRDAIAGYALTVRPGPSPAPRPA*
Ga0062591_1016102822	3300004643	Soil	AAAHEDGRLVLTVTGADPGRVREAVAGFALTVRCGPATAPQTAVNDPQKGPRP*
Ga0072329_13710081	3300004977	Peatlands Soil	EDGRLVLTVTGADPDRVQDAVAGFALTVRSGPSPTPQSTSK*
Ga0066815_100120712	3300005164	Soil	DGRLVLTVTGADPDPVRDAVAGFALTIRCGPSPAAQTTAN*
Ga0070658_106953442	3300005327	Corn Rhizosphere	GRLVLTVTGADPGRVRDAVAGFALTIRSGPSPAAQTTAN*
Ga0070659_1008370691	3300005366	Corn Rhizosphere	TAAHEDGRLVLIVTGADPGRIREAVAGFAVTVRSGPSPAAQTTAN*
Ga0070714_1012608521	3300005435	Agricultural Soil	TAAHENGRLVLTVTGADPDRVRDAVAGFALTVRCGPATAPQISVNDPQKGPRP*
Ga0070714_1020381191	3300005435	Agricultural Soil	QVTAAHEDGRLVLTVTGADPDRVRDAVAGFALTIRCGPATAPQTAVK*
Ga0070713_1015617272	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	AAHEDGRMVLTVTGADPGRVRDAVAGFALTVRSGPPSAAQTTANWPAEKGTRP*
Ga0068867_1011322051	3300005459	Miscanthus Rhizosphere	ADARVTAAHEDGRMVLTVTGADPGRVRDAVAGFALTIRSGPSPAAQTTAN*
Ga0070733_106262502	3300005541	Surface Soil	DAGTSAAHEDGRLIVTVTGADPGRVRDAVAGFALTIRVETPTHQTAEH*
Ga0070695_1002463411	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	GRLVLTVTGADPDRVRDAVAGFALTVRCGPATAPQIAVK*
Ga0068856_1016851312	3300005614	Corn Rhizosphere	GRLVLTVTGADPDRVRDAVAGFALTIRCGPATAPQTAVK*
Ga0068856_1019465902	3300005614	Corn Rhizosphere	HEDGRLVVTVTGAGPGRVRNAVAGFALTVRCGPSPAEQTTTN*
Ga0068851_106607282	3300005834	Corn Rhizosphere	AAHEDGRMVLTVTGADPGRVRDAVAGFALTVRSGPPSAAQTTAN*
Ga0070717_101337623	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	GRLIVTVTGADPGRVRDAVAGFALTVRSGPPPAAQTTAN*
Ga0070717_104939822	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	DGRLVVTVTGADPDRVQDAVAGFALTVRSGPSPIPQTTE*
Ga0070717_111384612	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	DGRLVLTVTGADPDRVRDAVAGFALTVRCGPATAPRSP*
Ga0075019_110484572	3300006086	Watersheds	DARVTAAHEDGRLVVTVTGADPDRVQDAVAGFALTVRSGPSPTPQSTSK*
Ga0075015_1005590092	3300006102	Watersheds	AAHEDGRLVLTVTGADPGRVRDAVAGFALTVRSGPSPAAQTTNK*
Ga0075015_1009343621	3300006102	Watersheds	HGRLVVTVTGADPGRVRDAVAGFALTVRSGPSPAPAN*
Ga0070715_106614512	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	TVTGADPGRVRDAVAGFALTVRSGPSPAAQTAAN*
Ga0070716_1008133952	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VTAAHEDGRLVLTVTGADPDRVRDAVAGFALTIRSGPSPAEQTTNK*
Ga0070716_1008339581	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	EDGRLVLTVTGADPDRVRDAVAGFALTVRCGPATAPQIAVK*
Ga0097621_1003457411	3300006237	Miscanthus Rhizosphere	VLTVTGADPGRVRDAVAGFALTIRSGPSPAAQTTAN*
Ga0075021_107882871	3300006354	Watersheds	AHEDGRLVLTVTGADPDRVRDAVAGFALTVRAGPSPATQTT*
Ga0079222_107642041	3300006755	Agricultural Soil	QVTAAHDDGRLVLTVNGADPDRVHDAVAGVALTVPCGPATAPQTAVK*
Ga0079222_125065602	3300006755	Agricultural Soil	AHRDGRLVVTVAGADPGQVRDAITGFALAVTTVPWPDPAGEA*
Ga0079221_107094052	3300006804	Agricultural Soil	TAAHEDGRLVLTVTGADPDRVRDAVAGFALTVRCGPATAPRSP*
Ga0073928_101057041	3300006893	Iron-Sulfur Acid Spring	LTVTGADPDRVRDAVAGFALTVRCRPATAPQTTVT*
Ga0116221_10894062	3300009523	Peatlands Soil	AAYEDGRLVVTVTGADPGRVRDAVAGFALTVRSGPSPAAQTTSK*
Ga0116220_100735771	3300009525	Peatlands Soil	TVTGADPGRVRDAVAGFALTVRSGPSPAAQTTSK*
Ga0105238_130377441	3300009551	Corn Rhizosphere	LTVTGADPGRVRDAVAGFALTVRSGPPSAAQTTAN*
Ga0116105_10534872	3300009624	Peatland	TVTGADPGRVRDAVAGFALTVRSGPSPAAQTTPN*
Ga0116224_101792631	3300009683	Peatlands Soil	VVTVTGADPGRVRDAVAGFALTVRSGPSPAPATAAN*
Ga0116224_104335391	3300009683	Peatlands Soil	TAAHEHGRLVVTVTGADPGRVRDAVAGFALTVRSGPSPAAQTTNK*
Ga0116224_105198331	3300009683	Peatlands Soil	TAAHEDGRLVVTVTGTDPGRVREAVAGFALTIRTGPSPAAQTAAN*
Ga0116216_100376144	3300009698	Peatlands Soil	ARATAAHEHGRLVVTVTGADPGRVRDAVAGFALTVRSGPSPAPQSAVN*
Ga0116216_102331742	3300009698	Peatlands Soil	GRLVVTVTGADPGRVRDAVAGFALTVRSGPSPTAQTTSK*
Ga0116216_106565761	3300009698	Peatlands Soil	AYEDGRLVVTVTGADPGRVRDAVAGFALTVRSGPSPAPQITNK*
Ga0116217_102724781	3300009700	Peatlands Soil	HEDGRLVLTVTGADPGRVRDAVAGFALTVRSGPSPAEQTTNK*
Ga0116219_104667441	3300009824	Peatlands Soil	AYEDGRLVLTVTGADSSQVRAALAGFALAVRCGPATAPRSP*
Ga0116223_102852182	3300009839	Peatlands Soil	VTVTGADPGRVRDAVAGFALTIRTGPSPAAQTAAN*
Ga0126373_105305571	3300010048	Tropical Forest Soil	HEDGRLVVTVTGADPGLVRDAVAGFALTVRCGPSPAPQTAAQ*
Ga0074045_104428122	3300010341	Bog Forest Soil	VTAAHEDGRLVVTVTGADPDRVQDAVAGFALTVRSAPPPAPQSTKK*
Ga0136449_1019883991	3300010379	Peatlands Soil	EHGRLVVTVTGADPGRVRDAVAGFALTVRCGPSPAAQTTSK*
Ga0136449_1023604112	3300010379	Peatlands Soil	VTAAHEDGRLVVTVTGADPGRVRDAVAGFALTVRTGPSPAPQSAVN*
Ga0136449_1027398802	3300010379	Peatlands Soil	GLPAARAAATHEDGRLVLTVTGADPGRVRDAVAGFALTVRCGPSPCPQTSPK*
Ga0126361_105828751	3300010876	Boreal Forest Soil	RLVLTVTGADPDRVRDAVAGFALTVRSGPSPAAQTTAN*
Ga0138562_11833591	3300011084	Peatlands Soil	EDGRLVVTVTGADPGRVREAVAGFALTVRCGPSPAAQTTSK*
Ga0137370_110386721	3300012285	Vadose Zone Soil	QVTAAHENGRLVLTVTVADPGRVRDAVAGFALTVRSGPSPAAQTTAN*
Ga0163162_118865902	3300013306	Switchgrass Rhizosphere	VLTVPGADPGRVRDAVAGFALTVLSWPSTAAQTTAN*
Ga0181535_103847871	3300014199	Bog	TVTGADPGRVRDAVAGFTLTVRSGPSPAAQTTNK*
Ga0132255_1057415271	3300015374	Arabidopsis Rhizosphere	TVTGADPGRIRDAVAGFALTVRSGPPPVPRTTNK*
Ga0182040_106488682	3300016387	Soil	AGAAAANEDGRLVLTVTGADPGHVRDAVAGYALTVRPGPSPAPRPA
Ga0187818_100273321	3300017823	Freshwater Sediment	VVTVTGADPGRVRDTVAGFALTIRCGPSPAPEDHREVTRRK
Ga0187807_10796091	3300017926	Freshwater Sediment	LPDAQATAAHEDGRLVVTVTGTDPGRVREAVAGFALTIRTGPSPAAQTAAN
Ga0187806_13725351	3300017928	Freshwater Sediment	AIAAHEDGRLVVTVTGADPGQVRDALAGFALIVRSAPPPAGRTAAD
Ga0187879_106510061	3300017946	Peatland	ITVTGADPGRVRDAVAGFTLTVRSGPSPAAQTTNK
Ga0187817_109244422	3300017955	Freshwater Sediment	LVLTVTGADPGRVRDAVAGFALTVRCGPAPAPENAVK
Ga0187815_104916832	3300018001	Freshwater Sediment	VTVTGADPGQVRDALAGFALIVRSAPPPAGRTAAD
Ga0187887_101669842	3300018043	Peatland	ATAAHESGRLVITVTGADPDRVQDAVAGFALTVRSGPSPAEQTTNK
Ga0193730_10733911	3300020002	Soil	GRLVVTVTGADPGQVRDSVAGFALTVRSGPSPAEQTTNK
Ga0210403_109996962	3300020580	Soil	ATAAHEDGRLVLTVTGADPGRARDAVAGFALTIRSGPSPVAQTTAN
Ga0213881_100115741	3300021374	Exposed Rock	DARVTAAHEDGRLAVTVTGADPGRVRNAVAGFALTVRCGPSPAPQTIVK
Ga0213874_101539511	3300021377	Plant Roots	VVTVTGADPGRVRDAAAGFALTVRAEPAPAAQTAAT
Ga0210392_103527882	3300021475	Soil	ATAAHEDGRLVVTVTGADPSRVRDAVAGFALTVRCGPSSAAQTAAN
Ga0126371_116612042	3300021560	Tropical Forest Soil	ARAAAAYEDGRLVLTVTGADPDRVRDAVAGYALTVRPGPSPAPRPA
Ga0207684_104100342	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	RLVVTVTGADPDRVRDAVAGFALTVRCGPSPSPQTAAK
Ga0207687_102866781	3300025927	Miscanthus Rhizosphere	GTQVTAAHEDGRLVLTVTGADPDRVRDAVAGFALTVRCGPATAPQIAVK
Ga0207665_111910093	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	AGTVTADQEDGRLVVTVTGMDPELVREAVAGFALAVRVAP
Ga0207658_103954892	3300025986	Switchgrass Rhizosphere	EDGRMVLTVTGADPGRVRDAVAGFALTVRSGPPSAAQTTAN
Ga0207698_101900952	3300026142	Corn Rhizosphere	RVTAAHEDGRMVLTVTGADPGRVRDAVAGFALTVRSGPPSAAQTTANWPAEKGTRP
Ga0207722_10248442	3300027003	Tropical Forest Soil	ARAAAAHEDGRLVVTVTGADPGQARDAVAGFALTIRTGPSPAPQTTAT
Ga0207776_10282911	3300027035	Tropical Forest Soil	AHEDGRLVVTVTGADPGQAREAVAGFALTIRTGPSPASQTTAT
Ga0207855_10234141	3300027039	Tropical Forest Soil	RATAAHEDGRLVVTVTGADPGQARDALAGFAITVRSEPSSAPQTAAN
Ga0208199_10123722	3300027497	Peatlands Soil	GVADARVTAAYEDGRLVVTVTGADPGRVRDAVAGFALTVRSGPSPAAQTTSK
Ga0208324_10030596	3300027604	Peatlands Soil	EHGRLVVTVTGADPGRVRDAVAGFALTVRSGPSPAPQSAVN
Ga0209178_11764802	3300027725	Agricultural Soil	ALTVTGADPGRVRDAVAGFALTVRSEPSPAAQTTAN
Ga0209328_101299052	3300027727	Forest Soil	TAAHEDGRLVVTVTGTDHGRVRDAVAGFALTVRSGPPPAPQTTPK
Ga0209274_104588932	3300027853	Soil	VADARVTAAHEDGRLVLTVTGADPGRVRDAVAGFALTVRSGPSPAEQTTNK
Ga0209517_100195438	3300027854	Peatlands Soil	AYEDGRLVVTVTGADPGRVRDAVAGFALTVRSGPSPAAQTTNK
Ga0209517_103860172	3300027854	Peatlands Soil	LVVTVTGADPGRVRDAVAGFALTVRSGPSPAAQTTNK
Ga0209167_104812182	3300027867	Surface Soil	EDGRLIVTVTGADPGRVRDAVAGFALTIRVETPTHQTAEH
Ga0268265_121215731	3300028380	Switchgrass Rhizosphere	DGRLVLTVTGADPGRVRDAVAGFALTVRSGPSPAAQTTAN
Ga0268264_108817012	3300028381	Switchgrass Rhizosphere	QVTAAHEDGRLVLTVTGADPDRVRDAVAGFALTVRCGPATAPQIAVK
Ga0307280_100226191	3300028768	Soil	ENGRLVLTVTGADPGRVRDAVAGFALTVRSGPSPAAQTTNK
Ga0310037_102048941	3300030494	Peatlands Soil	GLPDARADAAYEHGRLVVTVTGADPGRVRDAVAGFALTVRSRPSPAPAN
Ga0310037_103249421	3300030494	Peatlands Soil	RATAAHEHGRLVVTVTGADPGRVRDAVAGFALTVRSGPSPAPQSAVN
Ga0310038_102236752	3300030707	Peatlands Soil	EHGRLVVTVTGADPGRVRDAVAGFALTVRSGPSPAAQTTAK
Ga0302320_104122491	3300031524	Bog	AHEHGRLVITVTGADPDRVQDAVAGFALTVRSGPSPAEQTTNK
Ga0318573_102921511	3300031564	Soil	LVRGGAGAAAAYEDGRLVLTVTGADPGHVRDAVAGYALTVRPGPSPAPRPA
Ga0318573_107849921	3300031564	Soil	PAAAHQDGRLIVTVTGADPGRVREAVAGFALTIRTGPSPAAQTAAN
Ga0310915_101234952	3300031573	Soil	ARATAAHEDGRLVVTVTGADPDRVRDAVAGFALSVRCGTSPASQTAAQ
Ga0318542_106991771	3300031668	Soil	AAHEDGRLVVTVTGADPGRVREAVAGFALTIRTGPSPAQTTAN
Ga0310686_1043570272	3300031708	Soil	SAAHEDGRLIVTVTGADPGRVRDAVAGFALTIRTGPSPAAPAAAN
Ga0310813_105489902	3300031716	Soil	RLVLTVTGADPGRVRDAVAGFALTVRSGPSPATQTTAN
Ga0318501_102023432	3300031736	Soil	RATAAHEDGRLVVTVTGADPDRVRDAVAGFALSVRCGTSPASQTAAQ
Ga0318554_102534712	3300031765	Soil	AAHEDGRLVVTVTGADPGRVRDAVAGFAVTVRCGPSPAPHTTAK
Ga0318526_103486741	3300031769	Soil	VVTVTGADPDRVRDAVAGFALSVRCGTSPASQTAAQ
Ga0318499_104359382	3300031832	Soil	AVTAAHEDGRLVVTVTGADLDRVQDAVNGFALTVRCGPLPAPQTAAN
Ga0318551_103124672	3300031896	Soil	ATAAHEDGRLVVTVTGADPGRVRDAVAGFAVTVRCGPSPAPQTTAK
Ga0318520_103920091	3300031897	Soil	GLTDAQATAAHEDGRLVVTVTGADPGRVREAVAGFALTIRTGPSPAQTTAN
Ga0311367_112611051	3300031918	Fen	QVIAAHEDGRLVLTVTGADLGRVRDAVAGFALTVRCGPATAPGSP
Ga0306926_116439291	3300031954	Soil	ARATAAHEDGRLVVTVTGADPGRVRDAVAGFAVTVRCGPSPAPHTTAK
Ga0318562_103642742	3300032008	Soil	DGRLVVTVTGADPGRVRDAVAGFAVTVRCGPSPAPHTTAK
Ga0306924_121808901	3300032076	Soil	TAAHEDGRLVVTVTGADPGRVRDAVAGFALAIRIGPSPAPQTTAT
Ga0311301_100412929	3300032160	Peatlands Soil	ARATAAHEHGRLVVTVTGADPGRVRDAVAGFALTVRSGPSPAPQSAVN
Ga0311301_103148461	3300032160	Peatlands Soil	IAAYEDGRLVLTVTGADSSQVRAALAGFALAVRCGPATAPRSP
Ga0311301_124772182	3300032160	Peatlands Soil	AAHEHGRLVVTVTGADPGRVRDAVAGFALTVRSGPSPAAQTTSK
Ga0335085_103512552	3300032770	Soil	TAEHEDGQLVVTVAGADPARIRDAVTGFALTVRCGPSPAPQTAAQ
Ga0335078_124226762	3300032805	Soil	GLADARVTAAYEDGRLVVTVTGADPGRVQDAVAGFALTVRSGPPPAVQTTSN
Ga0335080_103636561	3300032828	Soil	EDGRLVVTVTGADPGRVRDAVAGFTLFTLTVRSGALPAAQTTSK
Ga0335080_110816212	3300032828	Soil	PDARATAAHENGQLVITVTGADPGRVRDAVAGFTLTVRCGPPPAEQTTNK
Ga0335081_104949912	3300032892	Soil	DGRLVLTVTGADPDRVRDALAGFALTVRCGPATAPENAVR
Ga0335083_107659841	3300032954	Soil	LADPQVTAAHEDGRLVVAVTGADPGRVRDAVAGFALTVRCGPATAPENAVK
Ga0335077_119828492	3300033158	Soil	LVLTVTGADPGRARDAVAGFALTIRSGSSPAAQTTAN
Ga0310914_106337291	3300033289	Soil	GLPDARATAAHEDGRLVVTVTGADPDRVRDAVAGFALSVRCGTSPASQTAAQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071681

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences