NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F071628

Metagenome Family F071628

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F071628
Family Type Metagenome
Number of Sequences 122
Average Sequence Length 38 residues
Representative Sequence MEKVTKEAKRIWNLAIGNKKATAVVIVAIIIVVHLVTN
Number of Associated Samples 66
Number of Associated Scaffolds 122

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 57.38 %
% of genes near scaffold ends (potentially truncated) 18.03 %
% of genes from short scaffolds (< 2000 bps) 71.31 %
Associated GOLD sequencing projects 54
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (61.475 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(86.066 % of family members)
Environment Ontology (ENVO) Unclassified
(91.803 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(99.180 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 53.03%    β-sheet: 0.00%    Coil/Unstructured: 46.97%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.41
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 122 Family Scaffolds
PF00476DNA_pol_A 50.82
PF01612DNA_pol_A_exo1 11.48
PF11753DUF3310 3.28
PF13538UvrD_C_2 1.64
PF02867Ribonuc_red_lgC 1.64
PF03592Terminase_2 0.82
PF13361UvrD_C 0.82

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 122 Family Scaffolds
COG0749DNA polymerase I, 3'-5' exonuclease and polymerase domainsReplication, recombination and repair [L] 50.82
COG0209Ribonucleotide reductase alpha subunitNucleotide transport and metabolism [F] 1.64
COG3728Phage terminase, small subunitMobilome: prophages, transposons [X] 0.82


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A61.48 %
All OrganismsrootAll Organisms37.70 %
unclassified Hyphomonasno rankunclassified Hyphomonas0.82 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002518|JGI25134J35505_10029209Not Available1573Open in IMG/M
3300005430|Ga0066849_10014610All Organisms → Viruses3194Open in IMG/M
3300005514|Ga0066866_10026601Not Available2261Open in IMG/M
3300005514|Ga0066866_10041783Not Available1755Open in IMG/M
3300005514|Ga0066866_10045066Not Available1682Open in IMG/M
3300005514|Ga0066866_10259913Not Available599Open in IMG/M
3300005520|Ga0066864_10005486All Organisms → Viruses4306Open in IMG/M
3300005521|Ga0066862_10007853Not Available4154Open in IMG/M
3300005521|Ga0066862_10018411Not Available2600Open in IMG/M
3300005521|Ga0066862_10096928Not Available1009Open in IMG/M
3300005521|Ga0066862_10104142Not Available968Open in IMG/M
3300005521|Ga0066862_10239810Not Available594Open in IMG/M
3300005592|Ga0066838_10026140Not Available1674Open in IMG/M
3300005603|Ga0066853_10007059All Organisms → Viruses → Predicted Viral4068Open in IMG/M
3300005604|Ga0066852_10035201Not Available1905Open in IMG/M
3300005605|Ga0066850_10193998Not Available736Open in IMG/M
3300005838|Ga0008649_10162911Not Available883Open in IMG/M
3300006090|Ga0082015_1008357All Organisms → Viruses → environmental samples → uncultured virus1801Open in IMG/M
3300006166|Ga0066836_10821188Not Available562Open in IMG/M
3300006166|Ga0066836_10972676All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales511Open in IMG/M
3300006736|Ga0098033_1015949Not Available2369Open in IMG/M
3300006736|Ga0098033_1185240Not Available578Open in IMG/M
3300006738|Ga0098035_1024424All Organisms → Viruses → environmental samples → uncultured virus2330Open in IMG/M
3300006738|Ga0098035_1050961All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1514Open in IMG/M
3300006738|Ga0098035_1164541Not Available750Open in IMG/M
3300006738|Ga0098035_1171660All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales731Open in IMG/M
3300006738|Ga0098035_1291260Not Available533Open in IMG/M
3300006751|Ga0098040_1013045All Organisms → Viruses → environmental samples → uncultured virus2812Open in IMG/M
3300006751|Ga0098040_1052843Not Available1261Open in IMG/M
3300006751|Ga0098040_1110283Not Available825Open in IMG/M
3300006751|Ga0098040_1130001Not Available750Open in IMG/M
3300006752|Ga0098048_1075895All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1031Open in IMG/M
3300006752|Ga0098048_1100218All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales877Open in IMG/M
3300006752|Ga0098048_1153366Not Available686Open in IMG/M
3300006753|Ga0098039_1073558Not Available1184Open in IMG/M
3300006754|Ga0098044_1078408All Organisms → Viruses → environmental samples → uncultured virus1372Open in IMG/M
3300006754|Ga0098044_1127422All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1030Open in IMG/M
3300006754|Ga0098044_1147129All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales945Open in IMG/M
3300006754|Ga0098044_1334519Not Available576Open in IMG/M
3300006789|Ga0098054_1095235All Organisms → Viruses → environmental samples → uncultured virus1116Open in IMG/M
3300006793|Ga0098055_1064818Not Available1452Open in IMG/M
3300006793|Ga0098055_1161750Not Available859Open in IMG/M
3300006793|Ga0098055_1338338Not Available560Open in IMG/M
3300006923|Ga0098053_1021961All Organisms → Viruses → environmental samples → uncultured virus1384Open in IMG/M
3300006923|Ga0098053_1026595All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1238Open in IMG/M
3300006925|Ga0098050_1021388All Organisms → Viruses → environmental samples → uncultured virus1797Open in IMG/M
3300006928|Ga0098041_1082676All Organisms → Viruses → environmental samples → uncultured virus1036Open in IMG/M
3300006928|Ga0098041_1188441Not Available661Open in IMG/M
3300007504|Ga0104999_1033297Not Available2628Open in IMG/M
3300007508|Ga0105011_1004993Not Available10624Open in IMG/M
3300007513|Ga0105019_1001224Not Available41481Open in IMG/M
3300007513|Ga0105019_1092474All Organisms → Viruses → environmental samples → uncultured virus1665Open in IMG/M
3300007513|Ga0105019_1213488Not Available936Open in IMG/M
3300007963|Ga0110931_1150500Not Available699Open in IMG/M
3300008050|Ga0098052_1006057All Organisms → cellular organisms → Bacteria → Proteobacteria6684Open in IMG/M
3300008050|Ga0098052_1017807unclassified Hyphomonas → Hyphomonas sp.3454Open in IMG/M
3300008050|Ga0098052_1026782Not Available2666Open in IMG/M
3300008050|Ga0098052_1037525All Organisms → Viruses2159Open in IMG/M
3300008050|Ga0098052_1076422All Organisms → Viruses → environmental samples → uncultured virus1394Open in IMG/M
3300008050|Ga0098052_1401529Not Available509Open in IMG/M
3300008217|Ga0114899_1225186Not Available586Open in IMG/M
3300008740|Ga0115663_1076962Not Available1002Open in IMG/M
3300009593|Ga0115011_10045165Not Available3000Open in IMG/M
3300009593|Ga0115011_10759636Not Available799Open in IMG/M
3300009593|Ga0115011_10831641Not Available767Open in IMG/M
3300009604|Ga0114901_1152386Not Available693Open in IMG/M
3300009790|Ga0115012_12053800Not Available508Open in IMG/M
3300010150|Ga0098056_1020440All Organisms → Viruses2362Open in IMG/M
3300010150|Ga0098056_1055337Not Available1370Open in IMG/M
3300010150|Ga0098056_1331953All Organisms → Viruses → environmental samples → uncultured virus500Open in IMG/M
3300010151|Ga0098061_1226227All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Fussvirus657Open in IMG/M
3300010151|Ga0098061_1275525Not Available582Open in IMG/M
3300010153|Ga0098059_1059168Not Available1534Open in IMG/M
3300010153|Ga0098059_1072003Not Available1381Open in IMG/M
3300010155|Ga0098047_10245350Not Available681Open in IMG/M
3300017702|Ga0181374_1023458Not Available1093Open in IMG/M
3300017704|Ga0181371_1045586Not Available715Open in IMG/M
3300017705|Ga0181372_1038090All Organisms → Viruses → environmental samples → uncultured virus812Open in IMG/M
3300017718|Ga0181375_1005692All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2239Open in IMG/M
3300020327|Ga0211573_1096165All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria688Open in IMG/M
3300020327|Ga0211573_1147516All Organisms → Viruses → environmental samples → uncultured virus516Open in IMG/M
3300020344|Ga0211570_1078465Not Available752Open in IMG/M
3300020395|Ga0211705_10393839All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria513Open in IMG/M
3300022225|Ga0187833_10068917All Organisms → Viruses2366Open in IMG/M
3300022227|Ga0187827_10033657Not Available4386Open in IMG/M
3300022227|Ga0187827_10038936All Organisms → Viruses3982Open in IMG/M
(restricted) 3300022902|Ga0233429_1026060All Organisms → Viruses3183Open in IMG/M
3300025066|Ga0208012_1001898All Organisms → Viruses5291Open in IMG/M
3300025066|Ga0208012_1005636All Organisms → Viruses2492Open in IMG/M
3300025066|Ga0208012_1038789Not Available718Open in IMG/M
3300025066|Ga0208012_1040294Not Available700Open in IMG/M
3300025066|Ga0208012_1046666Not Available639Open in IMG/M
3300025066|Ga0208012_1060754Not Available539Open in IMG/M
3300025070|Ga0208667_1040392All Organisms → Viruses → environmental samples → uncultured virus790Open in IMG/M
3300025072|Ga0208920_1009333Not Available2224Open in IMG/M
3300025072|Ga0208920_1017667Not Available1556Open in IMG/M
3300025084|Ga0208298_1093589Not Available549Open in IMG/M
3300025085|Ga0208792_1010787All Organisms → Viruses → environmental samples → uncultured virus2073Open in IMG/M
3300025085|Ga0208792_1010902All Organisms → Viruses2061Open in IMG/M
3300025085|Ga0208792_1093993Not Available525Open in IMG/M
3300025096|Ga0208011_1002138Not Available6664Open in IMG/M
3300025096|Ga0208011_1066726All Organisms → Viruses806Open in IMG/M
3300025096|Ga0208011_1124635Not Available530Open in IMG/M
3300025097|Ga0208010_1122718Not Available521Open in IMG/M
3300025098|Ga0208434_1042809Not Available1018Open in IMG/M
3300025098|Ga0208434_1085777Not Available635Open in IMG/M
3300025103|Ga0208013_1009877Not Available3097Open in IMG/M
3300025103|Ga0208013_1010595All Organisms → Viruses2960Open in IMG/M
3300025110|Ga0208158_1091626Not Available718Open in IMG/M
3300025110|Ga0208158_1136635Not Available562Open in IMG/M
3300025112|Ga0209349_1004826All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria5911Open in IMG/M
3300025118|Ga0208790_1126613Not Available723Open in IMG/M
3300025128|Ga0208919_1140313Not Available754Open in IMG/M
3300025133|Ga0208299_1034478Not Available2068Open in IMG/M
3300025133|Ga0208299_1039619Not Available1880Open in IMG/M
3300025133|Ga0208299_1061844Not Available1381Open in IMG/M
3300025133|Ga0208299_1218495Not Available554Open in IMG/M
3300026209|Ga0207989_1018540All Organisms → Viruses2291Open in IMG/M
3300026254|Ga0208522_1151350All Organisms → Viruses584Open in IMG/M
3300026263|Ga0207992_1029000Not Available1697Open in IMG/M
3300026268|Ga0208641_1014894All Organisms → Viruses2796Open in IMG/M
3300027906|Ga0209404_10081212All Organisms → Viruses1887Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine86.07%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine4.10%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.28%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater2.46%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean1.64%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.82%
Water ColumnEnvironmental → Aquatic → Marine → Coastal → Unclassified → Water Column0.82%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.82%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002518Marine viral communities from the Pacific Ocean - ETNP_6_100EnvironmentalOpen in IMG/M
3300005430Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69EnvironmentalOpen in IMG/M
3300005514Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV263EnvironmentalOpen in IMG/M
3300005520Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV251EnvironmentalOpen in IMG/M
3300005521Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV255EnvironmentalOpen in IMG/M
3300005592Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV89EnvironmentalOpen in IMG/M
3300005603Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV61EnvironmentalOpen in IMG/M
3300005604Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV63EnvironmentalOpen in IMG/M
3300005605Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV67EnvironmentalOpen in IMG/M
3300005838Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_130m_DNAEnvironmentalOpen in IMG/M
3300006090Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP124EnvironmentalOpen in IMG/M
3300006166Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV91EnvironmentalOpen in IMG/M
3300006736Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaGEnvironmentalOpen in IMG/M
3300006738Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaGEnvironmentalOpen in IMG/M
3300006751Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaGEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006753Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaGEnvironmentalOpen in IMG/M
3300006754Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006923Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaGEnvironmentalOpen in IMG/M
3300006925Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaGEnvironmentalOpen in IMG/M
3300006928Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaGEnvironmentalOpen in IMG/M
3300007504Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 267m, 2.7-0.2um, replicate aEnvironmentalOpen in IMG/M
3300007508Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um, replicate aEnvironmentalOpen in IMG/M
3300007513Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate bEnvironmentalOpen in IMG/M
3300007963Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)EnvironmentalOpen in IMG/M
3300008050Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaGEnvironmentalOpen in IMG/M
3300008217Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215EnvironmentalOpen in IMG/M
3300008740Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um, replicate aEnvironmentalOpen in IMG/M
3300009593Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 MetagenomeEnvironmentalOpen in IMG/M
3300009604Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16EnvironmentalOpen in IMG/M
3300009790Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 MetagenomeEnvironmentalOpen in IMG/M
3300010150Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaGEnvironmentalOpen in IMG/M
3300010151Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaGEnvironmentalOpen in IMG/M
3300010153Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaGEnvironmentalOpen in IMG/M
3300010155Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaGEnvironmentalOpen in IMG/M
3300017702Marine viral communities from the Subarctic Pacific Ocean - Lowphox_10 viral metaGEnvironmentalOpen in IMG/M
3300017704Marine viral communities from the Subarctic Pacific Ocean - Lowphox_07 viral metaGEnvironmentalOpen in IMG/M
3300017705Marine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaGEnvironmentalOpen in IMG/M
3300017718Marine viral communities from the Subarctic Pacific Ocean - Lowphox_11 viral metaGEnvironmentalOpen in IMG/M
3300020327Marine microbial communities from Tara Oceans - TARA_B100001964 (ERX556115-ERR599070)EnvironmentalOpen in IMG/M
3300020344Marine microbial communities from Tara Oceans - TARA_B100001964 (ERX556104-ERR598987)EnvironmentalOpen in IMG/M
3300020395Marine microbial communities from Tara Oceans - TARA_B100000427 (ERX555987-ERR599133)EnvironmentalOpen in IMG/M
3300022225Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_400_PacBio MetaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300022227Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300022902 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_135_MGEnvironmentalOpen in IMG/M
3300025066Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025072Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025084Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025085Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025096Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025097Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025098Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025103Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025110Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025112Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)EnvironmentalOpen in IMG/M
3300025118Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025128Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025133Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026209Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65 (SPAdes)EnvironmentalOpen in IMG/M
3300026254Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV86 (SPAdes)EnvironmentalOpen in IMG/M
3300026263Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV255 (SPAdes)EnvironmentalOpen in IMG/M
3300026268Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV253 (SPAdes)EnvironmentalOpen in IMG/M
3300027906Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI25134J35505_1002920913300002518MarineEEKTMEKVKQEAKRIWNLAINNKKATIIVIVAVIIIYELITK*
Ga0066849_1001461023300005430MarineMEGTMEKVTKEAKRIWNLAIGNKKATAVVIVAIIIIVHLVTN*
Ga0066866_1002660133300005514MarineMEKVIHNAKRIWNLAIGNKKATAVVVVAVIIVVHLITN*
Ga0066866_1004178363300005514MarineKEEKTMEKVKQEAKRIWNLAINNKKATIIVIVAVIIIYELVTK*
Ga0066866_1004506623300005514MarineMEKVKQEVKRIWNLAINNKKTTVIVIVAIIILYELATK*
Ga0066866_1025991323300005514MarineMENVKQYAKKIWNLAIGNKKATAVVIVAIIIVVHLI
Ga0066864_1000548673300005520MarineMEKVKQEAKRIWNLAINNKKATIIVIVAVIIIYELITK*
Ga0066862_1000785323300005521MarineMEKVTKEAKRIWNLAIGNKKATAVVIVAIIIIVHLVTN*
Ga0066862_1001841123300005521MarineMEKVTQHAKRIWNLAIGNKKATAVVIVAVIIVVHLITN*
Ga0066862_1009692823300005521MarineMEKVISEAKRIWNLAVGNKKATAVVIVAIIIVVHLITN*
Ga0066862_1010414223300005521MarineMEKVKQEAKRIWNLAINNKKATIIVIVAVIIIYELVTK*
Ga0066862_1023981023300005521MarineMEKVKQEVKRIWNLAINNKKTTIVVIVAIIILYELATK*
Ga0066838_1002614043300005592MarineKVKQEAKRIWNLAINNKKATIIVIVAVIIIYELVTK*
Ga0066853_1000705943300005603MarineMEKVKQEVKRIWNLAINNKRTTVIVIVAIIILYELATK*
Ga0066852_1003520143300005604MarineMENVKQYAKKIWNLAIGNKKATAVVIVAIIIIVHLATK*
Ga0066850_1019399823300005605MarineMEKVKQEVKRIWNLAINNKKTTVIVIVAIIILYEL
Ga0008649_1016291113300005838MarineMEKVIQNAKRIWNLAISNKKATAVVVVAVIIVVHLITN*
Ga0082015_100835723300006090MarineMEKVKQEVKRIWNLAINNKKATIVVIVAIIILYELATK*
Ga0066836_1082118813300006166MarineMEKVISEAKRIWNLAIGNKKATVVAIVAVIIVVHLITN*
Ga0066836_1097267623300006166MarineMEKVKQEAKRIWNLAIGNKKATAVVIVVVIIIINLVT*
Ga0098033_101594943300006736MarineMEKVIQEAKRIWNLAINNKKATVVVIVAIIIIYELVTK*
Ga0098033_118524013300006736MarineMEKVTKEAKRIWNLAIGNKKATIVIIIAIVVVVHLVTN*
Ga0098035_102442423300006738MarineMEKVIQNAKRIWNLAIGNKKATAVVIVAVIIVVHLATN*
Ga0098035_105096123300006738MarineMEKVIHEAKRIWKLAIGNKKATAVAIIAVIIVVHLITN*
Ga0098035_116454113300006738MarineMEKVTKEAKRIWNLAIGNKKATAVVIVAVIIVVHLVTN*
Ga0098035_117166023300006738MarineMEKVTQHAKRIWNLAIGNKKATAVAIVAIIIVVHLITN*
Ga0098035_129126013300006738MarineMEKVIHNAKRIWNLAISNKKATAVVVVAVIIVVHLITN*
Ga0098040_101304543300006751MarineMEKVTKEAKRIWNLAIGNKKATAVVIVAIIIVVHLVTN*
Ga0098040_105284333300006751MarineMEKVKQHAKRIWNLAISNKKATIVAIVAVIIVVHLITN*
Ga0098040_111028313300006751MarineMEKVTKEAKRIWDLAISNKKATAVVIIAIVIIVHLITN*
Ga0098040_113000123300006751MarineMEKVIQEAKRIWNLAINNKKATIIVIVAVIIIYELITK
Ga0098048_107589523300006752MarineMEKVISEAKRIWNLAIGNKKATVVVIVAVIIVVHLITN*
Ga0098048_110021823300006752MarineMEKVIHEAKRIWNLAIANKRATAVAVVAIIIVVHLVTN*
Ga0098048_115336623300006752MarineMEGTMEKVTKEAKRIWNLAIGNKKATIIIIIAIVVIVHLVTN*
Ga0098039_107355813300006753MarineMEKVTKEAKRIWNLAIGNKKATIIIIIAIVVVVHLVTN*
Ga0098044_107840823300006754MarineMEKVIQHAKRIWNLAIGNKKATVVAIVAVIVVVHLITN*
Ga0098044_112742223300006754MarineMEKVIQHAKRIWNLAIGNKKATAVVIVAVIIVVHLATN*
Ga0098044_114712923300006754MarineMEKVTKEAKRIWKLAIGNKKATAVVIVAIIIIVHLVTN*
Ga0098044_133451923300006754MarineMEKVTKEAKRIWNLAVSNKKATIVVIVAIVIIVHLVTN*
Ga0098054_109523523300006789MarineMEKVIQNAKRIWNLAMGNKKATAVVIVAVIIVVHLVTN*
Ga0098055_106481823300006793MarineMEKVIQHAKRIWNLAIGNKKATIVVVVAVIIIVHLVTN*
Ga0098055_116175023300006793MarineMEKVIKNAKRIWNLAIGNKKATAVVIVAVIIVVHLVTN*
Ga0098055_133833813300006793MarineMEKVTKEAKCIWNLAVSNRKATIVVIVAIVIIVHLVTN*
Ga0098053_102196123300006923MarineMEKVIQNAKRIWNLAIGNKKATAVVIVAVIIVVHLITN*
Ga0098053_102659523300006923MarineMEKVISEAKRIWNLAVSNKKATAVVIVAIIIVVHLITN*
Ga0098050_102138823300006925MarineMEKVIKNAKRIWNLAIGNKKATAVVIVAVIIVVNLVTN*
Ga0098041_108267623300006928MarineMEKVTKEAKRIWNLAIGNKKATAVVIVAIIIIVHL
Ga0098041_118844123300006928MarineMEKVIHHAKRIWNLAISNKKATAVVVVAVIIVVHLITN*
Ga0104999_103329733300007504Water ColumnMEKVKQHAKRIWGLAKANKKATIVVVVAIIIIYELATK*
Ga0105011_1004993123300007508MarineMEKVKQHAKRIWGLAKANKKATIIVVVAIIIIYELATK*
Ga0105019_1001224293300007513MarineMEKVTKEAKRIWNLAISNKKATAVVIIAIVIIVHLVTN*
Ga0105019_109247423300007513MarineMEKVTQHAKRIWNLAIGNKKATIVVIVAVIIVVHLVTN*
Ga0105019_121348823300007513MarineMEKVKQEAKRIYNLAMGNKKATAVVIAAIIIIIILI*
Ga0110931_115050013300007963MarineEEYIMEKVIHNAKRIWNLAISNKKATAVVVVAVIIVVHLITN*
Ga0098052_100605723300008050MarineMEGTMEKVTKEAKRIWKLAIGNKKATAVVIVAIIIIVHLVTN*
Ga0098052_101780713300008050MarineMEGTMEKVTKEAKRIWDLAVSNKKATIVVIVAIVIIVHLVTN*
Ga0098052_102678213300008050MarineMEKVKQEVKRIWNLAINNKKATIIVIVAVIIIYELITK*
Ga0098052_103752523300008050MarineMEKVKQHAKRIWNLAIGNKKATAVVIIAIIIIVHLATK*
Ga0098052_107642223300008050MarineMEGTMEKVTKEAKRIWNLAVSNKKATIVVIVAIVI
Ga0098052_140152923300008050MarineMEGTMEKVTKEAKRIWNLAIGNKKATAVIIIAIIIIVHLVTN*
Ga0114899_122518623300008217Deep OceanMEKVIQNAKKIWNLAIGNKKATIVVIIAILIVVHLVTN*
Ga0115663_107696233300008740MarineMEGTMEKVTKEAKRIWDLAASNKKATIVVIVAIVIIVHLITN*
Ga0115011_1004516533300009593MarineMEKVIKNAKRIWNLAIGNKKATAVVIVAIIIVVHLVTN*
Ga0115011_1075963613300009593MarineMEGTMEKVTKEAKRIWDLAVSNKKATAVVIIAIVIIVHLVTN*
Ga0115011_1083164123300009593MarineMEKVKQNAKRIWNLAISNKKATAVVIVAIIIIVHLITK*
Ga0114901_115238623300009604Deep OceanMEKVKQHAKRIWNLAIGNKKATVVVVIAIIIIVHLATK*
Ga0115012_1205380023300009790MarineMEGTMEKVTKEAKRIWDLAIGNKKATAVVIVAIIIVVHLVTN*
Ga0098056_102044013300010150MarineMEKVIQHAKRIWNLAIGNKKATAVVIVAVIIIVHLVTN*
Ga0098056_105533733300010150MarineMEGTMEKVTKEAKRLWDLAVSNKKATIVVIVAIVIIVHLVTN*
Ga0098056_133195323300010150MarineMEKVKQEAKRIWNLAISNKKATAVVVAIVVFIIISI*
Ga0098061_122622723300010151MarineMEKVKQEVKRIWNLAINNKKATIVVIVAIIIIYELATK*
Ga0098061_127552513300010151MarineKQEVKRIWNLAINNKKTTVIVIVAIIILYELATK*
Ga0098059_105916823300010153MarineMEKVTQQAKRIWNLAISNKKATAVVVVAVIIVVHLITN*
Ga0098059_107200313300010153MarineMEKVTQHAKRIWNLAIGNKKATAVAIVAIIIVVHLIT
Ga0098047_1024535023300010155MarineMEGTMEKVTKEAKRIWNLAIGNKKATIIIIIAIVVVVHLVTN*
Ga0181374_102345813300017702MarineTMEKVKQEAKRIWNLAINNKKATIIVIVAVIIIYELITK
Ga0181371_104558613300017704MarineKMEGTMEKVTKEAKRLWDLAVSNKKATIVVIVAIVIIVHLVTN
Ga0181372_103809023300017705MarineMEKVKQEAKRIWNLAINNKKATIIVIVAVIIIYEL
Ga0181375_100569233300017718MarineMEKVKQEAKRIWNLAINNKKATIVVIVAIIIIYELAT
Ga0211573_109616523300020327MarineMEKIIHEAKRLWTLAITNKKATAVVIVAVIIIYHLATK
Ga0211573_114751613300020327MarineMEKVKQEAKRIWNLAINNKKATIIVIVAVIIIYELVTK
Ga0211570_107846523300020344MarineMEKVKQEVKRIWNLAINNKKATIVVIVAIIILYELATK
Ga0211705_1039383923300020395MarineMEKVTKAVKEIWNLAISNKKATIVAIVAIIVVVHLVTN
Ga0187833_1006891723300022225SeawaterMEKVKQEAKRIWNLAINNKKATIIVIVAVIIIYELITK
Ga0187827_1003365743300022227SeawaterMEKVKQEVKRIWNLAINNKKTTVIVIVAIIILYELATK
Ga0187827_1003893623300022227SeawaterMENVKQYAKKIWNLAIGNKKATAVVIVAIIIIVHLATK
(restricted) Ga0233429_102606023300022902SeawaterMEKVIQNAKRIWNLAISNKKATAVVVVAVIIVVHLITN
Ga0208012_100189863300025066MarineMEKVIQHAKRIWNLAIGNKKATAVVIVAVIIVVHLATN
Ga0208012_100563623300025066MarineMEKVISEAKRIWNLAVSNKKATAVVIVAIIIVVHLITN
Ga0208012_103878923300025066MarineMEKVIQHAKRIWNLAIGNKKATIVVVVAVIIIVHLVTN
Ga0208012_104029423300025066MarineMEKVIHNAKRIWNLAISNKKATAVVVVAVIIVVHLITN
Ga0208012_104666613300025066MarineMEKVTKEAKRLWDLAVSNKKATIVVIVAIVIIVHLVTN
Ga0208012_106075423300025066MarineMEKVTKEAKRIWKLAIGNKKATAVVIVAIIIIVHLVTN
Ga0208667_104039223300025070MarineMEKVTKEAKRIWNLAIGNKKATAVVIVAIIIIVHLVTN
Ga0208920_100933323300025072MarineMEKVIQEAKRIWNLAINNKKATVVVIVAIIIIYELVTK
Ga0208920_101766763300025072MarineMEKVKQEVKRIWNLAINNKKATIVVIVAIIIIYELATK
Ga0208298_109358913300025084MarineGETMEKVTQHAKRIWNLAIGNKKATAVAIVAIIIVVHLITN
Ga0208792_101078723300025085MarineMEKVTQHAKRIWNLAIGNKKATAVVIVAVIIVVHLITN
Ga0208792_101090223300025085MarineMEKVISEAKRIWNLAIGNKKATVVAIVAVIIVVHLITN
Ga0208792_109399323300025085MarineMEKVTKEAKRIWDLAISNKKATAVVIIAIVIIVHLITN
Ga0208011_100213883300025096MarineMEKVIHEAKRIWKLAIGNKKATAVAIIAVIIVVHLITN
Ga0208011_106672623300025096MarineMEKVKQHAKRIWNLAISNKKATIVAIVAVIIVVHLITN
Ga0208011_112463523300025096MarineMEKVIQNAKRIWNLAIGNKKATAVVIVAVIIVVHLATN
Ga0208010_112271823300025097MarineMEKVIQHAKRIWNLAIGNKKATAVVIVAVIIIVHLVTN
Ga0208434_104280923300025098MarineMEKVTQHAKRIWNLAIGNKKATAVAIVAIIIVVHLITN
Ga0208434_108577723300025098MarineMEKVKQEVKRIWNLAINNKRTTVIVIVAIIILYELATK
Ga0208013_100987723300025103MarineMEKVIQNAKRIWNLAIGNKKATAVVIVAVIIVVHLITN
Ga0208013_101059523300025103MarineMEKVIQNAKRIWNLAMGNKKATAVVIVAVIIVVHLATN
Ga0208158_109162623300025110MarineKVISEAKRIWNLAIGNKKATVVAIVAVIIVVHLITN
Ga0208158_113663523300025110MarineMEKVISEAKRIWNLAVGNKKATAVVIVAIIIVVHLITN
Ga0209349_100482613300025112MarineMEKVKQEVKRIWNLAINNKKTTVIVIVAIIILYELAT
Ga0208790_112661323300025118MarineMEKVKQEAKRIWNLAISNKKATAVVIVAIIIVINLAT
Ga0208919_114031323300025128MarineEKVKQHAKRIWNLAISNKKATIVAIVAVIIVVHLITN
Ga0208299_103447833300025133MarineMEKVTQHAKRIWNLAIGNKKATIVVIVAVIIVVHLITN
Ga0208299_103961923300025133MarineMEKVIKNAKRIWNLAIGNKKATAVVIVAVIIVVHLVTN
Ga0208299_106184423300025133MarineMEKVIHHAKRIWNLAISNKKATAIVVVAVIIVVHLITN
Ga0208299_121849523300025133MarineMEGTMEKVTKEAKRIWNLAIGNKKATIIVIIAVVVIVHLVTN
Ga0207989_101854023300026209MarineMEKVKQEAKRIWNLAINNKKATIIAIVAVIIIYELITK
Ga0208522_115135023300026254MarineMEKVKQEAKRIWNLAINNKKATIIVIVAVIVIYHLATK
Ga0207992_102900023300026263MarineMEKVIHNAKRIWNLAIGNKKATAVVVVAVIIVVHLITN
Ga0208641_101489443300026268MarineMENVKQYAKKIWNLAVGNKKATAVVIVAIIIIVHLATK
Ga0209404_1008121243300027906MarineMEKVTQHAKRIWNLAIGNKKATAVVIVAIIIVVHLITN


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.