Metagenome / Metatranscriptome Family F071604

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071604
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	49 residues
Representative Sequence	MRYRILLLAAVLASGLAGAETIAVDNGIAVKESDVATPARGMTMDQVATK
Number of Associated Samples	108
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.54 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	90.98 %
Associated GOLD sequencing projects	102
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (77.049 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil (20.492 % of family members)
Environment Ontology (ENVO)	Unclassified (31.148 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.115 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 32.05% β-sheet: 0.00% Coil/Unstructured: 67.95%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF12704	MacB_PCD	68.03
PF00005	ABC_tran	2.46
PF02687	FtsX	0.82
PF04966	OprB	0.82
PF01183	Glyco_hydro_25	0.82
PF03176	MMPL	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	0.82
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	0.82
COG3659	Carbohydrate-selective porin OprB	Cell wall/membrane/envelope biogenesis [M]	0.82
COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	Cell wall/membrane/envelope biogenesis [M]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.05 %
Unclassified	root	N/A	22.95 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.05 %
Unclassified	root	N/A	22.95 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.05 %
Unclassified	root	N/A	22.95 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	47.54 %
Unclassified	root	N/A	22.95 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	10.66 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	8.20 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.82 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.95 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	8.20 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1.64 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	1.64 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.82 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.82 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.95 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	8.20 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.64 %
Ectothiorhodospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	0.82 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	0.82 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.82 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.95 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	8.20 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.64 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	0.82 %
Ectothiorhodospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	0.82 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.82 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.95 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	8.20 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.64 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	0.82 %
Ectothiorhodospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	0.82 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.82 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000546\|LJNas_1026260	Not Available	623	Open in IMG/M
3300001166\|JGI12694J13545_1021900	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300001661\|JGI12053J15887_10550363	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300002245\|JGIcombinedJ26739_100871074	Not Available	782	Open in IMG/M
3300002245\|JGIcombinedJ26739_101264346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	628	Open in IMG/M
3300002245\|JGIcombinedJ26739_101361448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	602	Open in IMG/M
3300003219\|JGI26341J46601_10091917	All Organisms → cellular organisms → Bacteria → Proteobacteria	894	Open in IMG/M
3300003505\|JGIcombinedJ51221_10369336	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300004080\|Ga0062385_10691870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	656	Open in IMG/M
3300004091\|Ga0062387_100059046	All Organisms → cellular organisms → Bacteria → Proteobacteria	1882	Open in IMG/M
3300005541\|Ga0070733_10913900	All Organisms → cellular organisms → Bacteria → Proteobacteria	590	Open in IMG/M
3300005542\|Ga0070732_10306717	Not Available	953	Open in IMG/M
3300005602\|Ga0070762_11282756	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300005712\|Ga0070764_10443519	All Organisms → cellular organisms → Bacteria → Proteobacteria	773	Open in IMG/M
3300005921\|Ga0070766_10606368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	735	Open in IMG/M
3300005944\|Ga0066788_10179467	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300005950\|Ga0066787_10052960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	785	Open in IMG/M
3300006172\|Ga0075018_10491696	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	638	Open in IMG/M
3300007255\|Ga0099791_10221590	Not Available	894	Open in IMG/M
3300007788\|Ga0099795_10316691	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300009519\|Ga0116108_1046554	All Organisms → cellular organisms → Bacteria → Proteobacteria	1386	Open in IMG/M
3300009661\|Ga0105858_1125978	Not Available	707	Open in IMG/M
3300009662\|Ga0105856_1302160	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300009764\|Ga0116134_1020341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2712	Open in IMG/M
3300010159\|Ga0099796_10374640	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	619	Open in IMG/M
3300010343\|Ga0074044_10936957	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300011269\|Ga0137392_11106215	Not Available	649	Open in IMG/M
3300011271\|Ga0137393_10933071	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300012203\|Ga0137399_10645992	Not Available	890	Open in IMG/M
3300012205\|Ga0137362_10104455	All Organisms → cellular organisms → Bacteria → Proteobacteria	2389	Open in IMG/M
3300012361\|Ga0137360_10890001	All Organisms → cellular organisms → Bacteria → Proteobacteria	767	Open in IMG/M
3300012363\|Ga0137390_10808391	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300012923\|Ga0137359_10036884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4219	Open in IMG/M
3300012925\|Ga0137419_10430007	Not Available	1037	Open in IMG/M
3300012929\|Ga0137404_11402959	Not Available	645	Open in IMG/M
3300012930\|Ga0137407_10746138	All Organisms → cellular organisms → Bacteria → Proteobacteria	923	Open in IMG/M
3300014654\|Ga0181525_10564605	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300014654\|Ga0181525_10825406	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300015082\|Ga0167662_1046491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	542	Open in IMG/M
3300015199\|Ga0167647_1143461	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300015264\|Ga0137403_11135489	Not Available	627	Open in IMG/M
3300018034\|Ga0187863_10744708	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300019785\|Ga0182022_1334914	All Organisms → cellular organisms → Bacteria → Proteobacteria	1826	Open in IMG/M
3300020579\|Ga0210407_11457601	All Organisms → cellular organisms → Bacteria → Proteobacteria	506	Open in IMG/M
3300020582\|Ga0210395_10317391	All Organisms → cellular organisms → Bacteria → Proteobacteria	1172	Open in IMG/M
3300021171\|Ga0210405_10893777	Not Available	675	Open in IMG/M
3300021401\|Ga0210393_10060304	All Organisms → cellular organisms → Bacteria → Proteobacteria	2987	Open in IMG/M
3300021401\|Ga0210393_10155806	All Organisms → cellular organisms → Bacteria → Proteobacteria	1837	Open in IMG/M
3300021402\|Ga0210385_11392402	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300021406\|Ga0210386_10088647	All Organisms → cellular organisms → Bacteria → Proteobacteria	2518	Open in IMG/M
3300021407\|Ga0210383_10074940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	2830	Open in IMG/M
3300021420\|Ga0210394_11081275	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	692	Open in IMG/M
3300021420\|Ga0210394_11834551	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300021432\|Ga0210384_11899695	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300021432\|Ga0210384_11909387	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300022527\|Ga0242664_1151548	Not Available	512	Open in IMG/M
3300024331\|Ga0247668_1004280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3093	Open in IMG/M
3300025480\|Ga0208688_1039125	Not Available	1082	Open in IMG/M
3300025509\|Ga0208848_1079434	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	676	Open in IMG/M
3300026221\|Ga0209848_1071472	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300026304\|Ga0209240_1078486	All Organisms → cellular organisms → Bacteria → Proteobacteria	1220	Open in IMG/M
3300026319\|Ga0209647_1118149	All Organisms → cellular organisms → Bacteria → Proteobacteria	1222	Open in IMG/M
3300026374\|Ga0257146_1089097	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300026941\|Ga0207741_1030556	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300027109\|Ga0208603_1043011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	695	Open in IMG/M
3300027117\|Ga0209732_1091176	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300027165\|Ga0208608_105366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	800	Open in IMG/M
3300027370\|Ga0209010_1089870	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300027439\|Ga0209332_1012587	All Organisms → cellular organisms → Bacteria → Proteobacteria	1674	Open in IMG/M
3300027496\|Ga0208987_1013523	All Organisms → cellular organisms → Bacteria → Proteobacteria	1366	Open in IMG/M
3300027516\|Ga0207761_1032677	Not Available	1023	Open in IMG/M
3300027528\|Ga0208985_1013630	All Organisms → cellular organisms → Bacteria → Proteobacteria	1551	Open in IMG/M
3300027537\|Ga0209419_1072492	All Organisms → cellular organisms → Bacteria → Proteobacteria	679	Open in IMG/M
3300027545\|Ga0209008_1001987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	4969	Open in IMG/M
3300027562\|Ga0209735_1036341	Not Available	1040	Open in IMG/M
3300027562\|Ga0209735_1085601	All Organisms → cellular organisms → Bacteria → Proteobacteria	685	Open in IMG/M
3300027567\|Ga0209115_1028419	All Organisms → cellular organisms → Bacteria → Proteobacteria	1259	Open in IMG/M
3300027590\|Ga0209116_1092482	Not Available	663	Open in IMG/M
3300027629\|Ga0209422_1044015	Not Available	1081	Open in IMG/M
3300027652\|Ga0209007_1137693	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	609	Open in IMG/M
3300027671\|Ga0209588_1119953	Not Available	842	Open in IMG/M
3300027676\|Ga0209333_1034210	Not Available	1417	Open in IMG/M
3300027684\|Ga0209626_1193170	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300027767\|Ga0209655_10237228	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300027768\|Ga0209772_10131741	All Organisms → cellular organisms → Bacteria → Proteobacteria	780	Open in IMG/M
3300027795\|Ga0209139_10048069	Not Available	1499	Open in IMG/M
3300027795\|Ga0209139_10203472	Not Available	701	Open in IMG/M
3300027869\|Ga0209579_10386440	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300027879\|Ga0209169_10624583	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300027894\|Ga0209068_10598387	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300027895\|Ga0209624_10340572	All Organisms → cellular organisms → Bacteria → Proteobacteria	999	Open in IMG/M
3300027895\|Ga0209624_11073715	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	519	Open in IMG/M
3300027903\|Ga0209488_10903931	Not Available	619	Open in IMG/M
3300029883\|Ga0311327_10681504	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	610	Open in IMG/M
3300029915\|Ga0311358_10700131	Not Available	744	Open in IMG/M
3300029939\|Ga0311328_10482772	Not Available	874	Open in IMG/M
3300029939\|Ga0311328_10672121	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	704	Open in IMG/M
3300029955\|Ga0311342_10161968	All Organisms → cellular organisms → Bacteria → Proteobacteria	2231	Open in IMG/M
3300030007\|Ga0311338_10215831	All Organisms → cellular organisms → Bacteria	2193	Open in IMG/M
3300030020\|Ga0311344_10847649	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	736	Open in IMG/M
3300030020\|Ga0311344_11178455	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	580	Open in IMG/M
3300030503\|Ga0311370_12081061	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300030580\|Ga0311355_10275929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1705	Open in IMG/M
3300030617\|Ga0311356_10481482	All Organisms → cellular organisms → Bacteria → Proteobacteria	1215	Open in IMG/M
3300030617\|Ga0311356_10709107	All Organisms → cellular organisms → Bacteria → Proteobacteria	963	Open in IMG/M
3300030618\|Ga0311354_11471574	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300030677\|Ga0302317_10195369	All Organisms → cellular organisms → Bacteria → Proteobacteria	931	Open in IMG/M
3300030763\|Ga0265763_1014594	Not Available	771	Open in IMG/M
3300030872\|Ga0265723_1012254	Not Available	637	Open in IMG/M
3300030940\|Ga0265740_1043402	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300031057\|Ga0170834_106936266	All Organisms → cellular organisms → Bacteria → Proteobacteria	992	Open in IMG/M
3300031524\|Ga0302320_11007345	Not Available	883	Open in IMG/M
3300031525\|Ga0302326_10951859	All Organisms → cellular organisms → Bacteria → Proteobacteria	1213	Open in IMG/M
3300031718\|Ga0307474_10079086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	2445	Open in IMG/M
3300031718\|Ga0307474_10147453	All Organisms → cellular organisms → Bacteria → Proteobacteria	1775	Open in IMG/M
3300031718\|Ga0307474_10874458	Not Available	711	Open in IMG/M
3300031823\|Ga0307478_10540730	All Organisms → cellular organisms → Bacteria → Proteobacteria	973	Open in IMG/M
3300031890\|Ga0306925_12226568	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300031962\|Ga0307479_11403026	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300032261\|Ga0306920_102175896	All Organisms → cellular organisms → Bacteria → Proteobacteria	772	Open in IMG/M
3300033824\|Ga0334840_196827	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300034199\|Ga0370514_099279	All Organisms → cellular organisms → Bacteria → Proteobacteria	743	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.18%
Host-Associated	Host-Associated	0.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.89%
Aquatic	Environmental → Aquatic	12.30%
Plants	Host-Associated → Plants	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.95%
Peat	Environmental → Terrestrial → Peat	13.93%
Freshwater	Environmental → Aquatic → Freshwater	10.66%
Sediment	Environmental → Aquatic → Sediment	1.64%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.98%
Loam	Environmental → Terrestrial → Soil → Loam	25.41%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	13.93%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.66%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	25.41%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	13.93%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.20%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.92%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.64%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.64%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.64%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	20.49%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.30%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.56%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	6.56%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.10%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.28%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.46%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.46%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	2.46%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.64%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.64%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.64%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.64%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.64%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.64%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.82%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.82%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.82%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.82%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.82%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.82%
Quercus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000546	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN_Illumina_Assembled	Host-Associated	Open in IMG/M
3300001166	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental	Open in IMG/M
3300005950	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009661	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-062	Environmental	Open in IMG/M
3300009662	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-060	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300015082	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-11c, vegetated hydrological feature)	Environmental	Open in IMG/M
3300015199	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-2c, rock/snow interface)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300019785	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024331	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09	Environmental	Open in IMG/M
3300025480	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150 (SPAdes)	Environmental	Open in IMG/M
3300025509	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300026221	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-062 (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026941	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 39 (SPAdes)	Environmental	Open in IMG/M
3300027109	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)	Environmental	Open in IMG/M
3300027117	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027165	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF035 (SPAdes)	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027439	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027496	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027516	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34 (SPAdes)	Environmental	Open in IMG/M
3300027528	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027652	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029915	III_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029939	I_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029955	II_Bog_E2 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030677	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_3	Environmental	Open in IMG/M
3300030763	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030872	Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030940	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033824	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S2 5-9	Environmental	Open in IMG/M
3300034199	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
LJNas_10262602	3300000546	Quercus Rhizosphere	MRYRILLLATVLASGLAGAETIAVDNGIAVKQSDVPTPTRGMT
JGI12694J13545_10219002	3300001166	Forest Soil	MRYRILLLATVLASGLAGAETIAVDNGIAVKQSEVPTPTRGMTMDQVAGKFGAPATK
JGI12053J15887_105503631	3300001661	Forest Soil	MRYRILLLATVLASGLAGAETIAVDNGIAVKQSEVPTPTRGMTMDQVAGKFGAPATKVP
JGIcombinedJ26739_1008710742	3300002245	Forest Soil	MKYAMRYRNLLLAALFAGGLAGAATVAVDNGIAVKET
JGIcombinedJ26739_1012643461	3300002245	Forest Soil	MNYRVLLVSAVLASGLAGVATADMVAVDNGIAVKESEVNTPSRGMTMSQVASKFGEP
JGIcombinedJ26739_1013614482	3300002245	Forest Soil	MRYRYLLLAAVLAGGVAGAETIAVDSGIALKESDVATPTRGMTMDQVATKFGAPAAKVPAVG
JGI26341J46601_100919172	3300003219	Bog Forest Soil	MTKQTLLYAALIAVSLTGIVKAETIAVDNGIAVKQSDVATPTRGMT
JGIcombinedJ51221_103693362	3300003505	Forest Soil	MRYRILLLAAALASGLAGAETIAVDNGIAVKQTDVATPTRGMTMDQVASKFG
Ga0062385_106918701	3300004080	Bog Forest Soil	MRYRILLLAGVLASGLAGAETIAVDNGIAVKQPDVPAPTRGMTMDQVASKFGAPANKIP
Ga0062387_1000590461	3300004091	Bog Forest Soil	MRYRILLLAGVLASGLAGAETIAVDNGIAVKQPDVPAPTRG
Ga0070733_109139001	3300005541	Surface Soil	MRYRNLLLAAVLAGGVAGAETIAIDNGIAVKETDVATPTRGMTMD
Ga0070732_103067172	3300005542	Surface Soil	MRYRILLLATVLASGLAGAETIAVDNGIAVKQSDVPT
Ga0070762_112827561	3300005602	Soil	MKYAMRYRNLLLAALFAGGLAGAATVAVDNGIAVKE
Ga0070764_104435191	3300005712	Soil	MRYRILLLAAVFAGGLAGAATIAVDNGIAVKDSDVTTPTRGMTMEQV
Ga0070766_106063681	3300005921	Soil	MRYRNLLLAAVFASGLAGAATVAVDNGIAVKETDVAMPTRGMTMDQVATKFGAPVTK
Ga0066788_101794672	3300005944	Soil	MRYRSLLLAAMFAGSLAGAETIAVDSGIAVKESDVATPARGMTMDQVAT
Ga0066787_100529602	3300005950	Soil	MRYQILLLAAVLASGLARAETIAVDSGIAVKESDVATPARGMTMDQVATKFGAP
Ga0075018_104916961	3300006172	Watersheds	MRYRNLLLAAVLASGLAQAETIAIDNGIAVKESDIATPAR
Ga0099791_102215901	3300007255	Vadose Zone Soil	MRYRYLLLAAVLASSLAGAETIAVDSGIAVKESDVVTPTRGMTM
Ga0099795_103166911	3300007788	Vadose Zone Soil	MDYRNLMVAAVLATGLSGFWAQGPVRAETIAVENGIAVKESDVATPARGMTMDQVATKFG
Ga0116108_10465542	3300009519	Peatland	MGKQTLMLAAFIAVSLTGFCKAETIAVDNGIAVKESDIATPARGMTMEQVAAKFGAPVS
Ga0105858_11259782	3300009661	Permafrost Soil	MRYRILLLAAVLASGLAGAETIAVDNGIAVKQSDVSTPTRGMTMDEVAGKFGAPAAKVPDIG
Ga0105856_13021601	3300009662	Permafrost Soil	MRYRILLLATVLASGLAGAETIAIDNGIAVKQSEVPTPA
Ga0116134_10203411	3300009764	Peatland	MGKQTLMLAAFIAVSLTGFCKAETIAVDNGIAVKESDIATPARGMTM
Ga0099796_103746401	3300010159	Vadose Zone Soil	MRYAMRYRNLLLAAVLASGLAGAETIAVDDGIAVKE
Ga0074044_109369571	3300010343	Bog Forest Soil	MRYAMRYRILLLAAALASGLAGAETIAVDNGIAVKQ
Ga0137392_111062152	3300011269	Vadose Zone Soil	MRYRILLLATVLASGLAGAETIAIDNGIAVKQSDVA
Ga0137393_109330711	3300011271	Vadose Zone Soil	MDYRNLMVAAVLATGLSGFWAQGSARAETIAVENGIAVKESDVVTPARGMTMEQVSTKFGAPVSKTPAV
Ga0137399_106459922	3300012203	Vadose Zone Soil	MDYRNLMVAAVLATGLSGFWAQGSARAETIAVENGIAVKESDVATPARGMTMDQVSTKFG
Ga0137362_101044551	3300012205	Vadose Zone Soil	MRYRYLLLAAVLAGGLAAAETIAVDSGIAVKESDVVTPARGMSMDQVATKF
Ga0137360_108900012	3300012361	Vadose Zone Soil	MKYRYLLLAAVLAGGLAAAETIAVDSGIAVKESDVVTPARGMSMDQVAT
Ga0137390_108083911	3300012363	Vadose Zone Soil	MRYRNLLLAAVLASGLAGAETIAIDNGIAVKESDVATPARGMTMDQVA
Ga0137359_100368845	3300012923	Vadose Zone Soil	MKYRYLLLAAVLAGGLAAAETIAVDSGIAVKESDVVTPTRGMTMDQVATKFGAPVTKV
Ga0137419_104300071	3300012925	Vadose Zone Soil	MDYRNLMVATVLATGLSGFWGQVRAETIAVENGIAVKESDVATPPRGMTMGQVATKFGAP
Ga0137404_114029591	3300012929	Vadose Zone Soil	MRYRILLLATVLASGLAGAETIAIDNGIAVKQSEV
Ga0137407_107461382	3300012930	Vadose Zone Soil	MRYRILLLATVLASGLAGAETIAIDNGIAVKQSEVPTPARAMT
Ga0181525_105646052	3300014654	Bog	MVAGSSASAETVATENGIAVKQSDVATPARGMSMDEVAARFGAPVTKVPA
Ga0181525_108254062	3300014654	Bog	MRYAMGYRNLLLAAVLFSGLAGAETIAVDNGIAVKES
Ga0167662_10464912	3300015082	Glacier Forefield Soil	MRYRNLLLAAVLASGLSQAETIAVDNGIAVKESDVATPNRGMTMEQVATKFG
Ga0167647_11434611	3300015199	Glacier Forefield Soil	MRYRNLLLAAVLASGLAGAETIAVDNGIAVKESDVATPSRGMTMN
Ga0137403_111354891	3300015264	Vadose Zone Soil	MRYRNLLLAAVLASGLAGAETIAVDNGIAVKESDVATPARGMTMDQ
Ga0187863_107447082	3300018034	Peatland	MGKQTLMLAAFIAVSLTGFCKAETIAVDNGIAVKESDIATPA
Ga0182022_13349144	3300019785	Fen	MRYRNLLLAAVLAGGLAGAETISVDNGIAVKESDVATPTRGMTMEQVASKFGPPPRKCPPWASRRFRAGSIP
Ga0210407_114576011	3300020579	Soil	MRYRYLLLAAVLASGLAGAETIAVDNGIAVKESDVATPARGMTMDQVTTKFGAPVTKV
Ga0210395_103173911	3300020582	Soil	MKYAVRYRNLLLAAVFAGGIAGAATVAVDNGIAVKDSDVATPNRGMTMSQVAAKF
Ga0210405_108937772	3300021171	Soil	MRYRILLLAAALASGLAGAETIAVDNGIAVKQTDVATPTRGMT
Ga0210393_100603041	3300021401	Soil	MRYRILLLAAVLASGLAGAETIAVDNGIAVKQSDVPTPTRGMTMDQVAGK
Ga0210393_101558063	3300021401	Soil	MRYRILLLAAVLASGLAGAETIAVDNGIAVKQTDVATPTRGM
Ga0210385_113924022	3300021402	Soil	MRYRILLLAAALASGLAGAETIAVDNGIAVKQTDVATPTRGMTMDQVASKFGDPANKVPAVGNPPI
Ga0210386_100886471	3300021406	Soil	MRYRILLLATVLASGLAGAETIAVDNGIAVKQSDVPTPT
Ga0210383_100749401	3300021407	Soil	MRYRILLLATVLASGLAGAETIAIDNGIAVKQTDVATPTR
Ga0210394_110812752	3300021420	Soil	MRYRILLLAAVLASGLAGAETIAVDNGIAVKESDVATPARGMTMDQVATKFGA
Ga0210394_118345511	3300021420	Soil	MDHRTLLVAAFLATGVAGLVDSSRAETISTDTGDIAVKESDVATPSRGMTMDQVASKFGAPVTKVPAVGKPP
Ga0210384_118996951	3300021432	Soil	MRYRILLLAAALASGLAGAETIAVDNGIAVKQTDVATPTRGMTMDQVASKFGDPANKVPAVG
Ga0210384_119093871	3300021432	Soil	MRYRILLLATVLASGLAGAETIAVDNGIAVKQSDVP
Ga0242664_11515482	3300022527	Soil	VTAGQVVLAAVLAGGVAGAETIAVDNGIAVKESDVATPARGMTMDEVATKFGTPVTKVP
Ga0247668_10042804	3300024331	Soil	MRYQILLLAAVLASGLAGAETIAVDSGIAVKESDVATPARGMTMDQVATKFGAPTTK
Ga0208688_10391252	3300025480	Peatland	MGKQTLMLAAFIAVSLTGFCKAETIAVDNGIAVKESDIATPARGMTMEQVAA
Ga0208848_10794341	3300025509	Arctic Peat Soil	MRYRNLLLAAVLASGLAGAETIAVDNGIAVKESDVVTPARGMTMDQ
Ga0209848_10714721	3300026221	Permafrost Soil	MRYRILLLAAVLASGLAGAETIAVDNGIAVKQSDVSTPTRGMTMDEVAGK
Ga0209240_10784862	3300026304	Grasslands Soil	MRYRYLLLAAVLASSLAGAETIAVDSGIAVKESDVVTPARGMTMDQVAT
Ga0209647_11181491	3300026319	Grasslands Soil	MRYRNLLLAAVLASGLAGAETIAIDNGIAVKESDVATPARGMTMDQVATKFGAPVNK
Ga0257146_10890972	3300026374	Soil	MRYRILLLAAVLASGLAGAETIAIDNGIAVKPSDVATPSRGMTMDQVAGKFGAPASKVPAVGAPPIS
Ga0207741_10305561	3300026941	Tropical Forest Soil	MRYRILLLAAVLASGLAGAETIAIDNGIAVKQSDVPTPTRGMTMDQV
Ga0208603_10430111	3300027109	Forest Soil	MRYAMRYRILLLAAALASGLAGAETIAVDNGIAVKQTDVATPTRGMTMDQVASKFGDPANKVPAVGN
Ga0209732_10911761	3300027117	Forest Soil	MKYAVRYRNLLLAAVFAGGIAGAATVAVDNGIAVKDSDVATPNRGM
Ga0208608_1053662	3300027165	Forest Soil	MRYRNLLLAAVFASGLAGAATVAVDNGIAVKETDVAMPTRGMTMDQVATKF
Ga0209010_10898701	3300027370	Forest Soil	VDYRTLLVAAVLALGLGGLVEISRADMVAVDSGIAVKESDVTTPARGMTMDQVASKFGAPVTKVPAVGK
Ga0209332_10125871	3300027439	Forest Soil	MRYRNLLLAAVLAGSVAGAETIAIDNGIAVKESDVATPAR
Ga0208987_10135231	3300027496	Forest Soil	MRYRNLLLAAVLASGFAAAETIAVDDGIAVKESDVATPARGMS
Ga0207761_10326772	3300027516	Tropical Forest Soil	MRYRILLLAAVLASGLAGAETIAIDNGIAVKQSDVPTPTRGMTMDQVATKFGAPASKI
Ga0208985_10136301	3300027528	Forest Soil	MRYAMRYRILLLATVLASGLAGAETIAVDNGIALKQSDVPTPTRGMTMDQVAGKFGAPATKVPA
Ga0209419_10724923	3300027537	Forest Soil	MRYRNLLLAAVLAGGVAGAETIAIDNGIAVKESDVATP
Ga0209008_10019877	3300027545	Forest Soil	MRCAMGYKSLLLAAVFAGGFAGAATVAVENGSKGVQ
Ga0209735_10363412	3300027562	Forest Soil	MRYRILLLAALLASGFAGAETIAIDNGIAVKQTDVVTPTRGMTMDQVASKFGDPAS
Ga0209735_10856011	3300027562	Forest Soil	MRYRNLLLAAVLAGGVAGAETIAIDNGIAVKESDVTTP
Ga0209115_10284191	3300027567	Forest Soil	MRYRILLLATVLASGLAGAETIAVDNGIAVKQSEVPTPTRGMTMDQV
Ga0209116_10924822	3300027590	Forest Soil	MRYRILLLATVLASGLAGAETIAVDNGIAVKQSDVPTPTRGM
Ga0209422_10440152	3300027629	Forest Soil	MRYRNLLLAAVLAGGVAGAETIAIDNGIAVKESDVATPARGMTMDQVATKFGTPVTKVPAVGNPP
Ga0209007_11376931	3300027652	Forest Soil	MRYRILLLAAVLASGLAGAETIAVDNGIAVKESDVATPARGMTMDQVATK
Ga0209588_11199532	3300027671	Vadose Zone Soil	MRYRYLLLAAVLASSLAGAETIAVDSGIAVKESDVVTPARGMSMDQVATKFGAP
Ga0209333_10342101	3300027676	Forest Soil	MRYRILLLATVLASGLAGAETIAVDNGIAVKQSDVPTPTRG
Ga0209626_11931701	3300027684	Forest Soil	MRYRNLLLAAVLASGVAGAETIAIDNGIAVKESDVAT
Ga0209655_102372282	3300027767	Bog Forest Soil	MRYRILLLAAALASGLAGAETIAVDNGIAVKQTDVATPTRGMTMDQVAGKFGDPASKVP
Ga0209772_101317411	3300027768	Bog Forest Soil	MRYRVLLLAAVLAGGLAGAETVAVDNGIAVKQTDVATPARGMTMDEVASKF
Ga0209139_100480692	3300027795	Bog Forest Soil	MRYRNLLLIAVLAGGYAGAATVAVDNGITVKESDVA
Ga0209139_102034721	3300027795	Bog Forest Soil	MKCAMRYRNLLLTAVLAGGFAGAATVAVDNGIAVKES
Ga0209579_103864401	3300027869	Surface Soil	MRYRNLLLAAVLAGGVAGAETIAVDNGIAVKETDVATPTRGMT
Ga0209169_106245832	3300027879	Soil	MRYRNLLLAAVFASGLAGAATVAVDNGIAVKETDVAMPTRGMTMDQVAT
Ga0209068_105983872	3300027894	Watersheds	MRYRILLLAAVLASGLAGAETIAVDNGIAVKPSDI
Ga0209624_103405722	3300027895	Forest Soil	MKYAVRYRNLLLAAVFAGGIAGAATVAVDNGIAVKDSDVATPNRGMTMNQVAAKFGAPV
Ga0209624_110737151	3300027895	Forest Soil	MRYRNLLLAAAFASGLAAAATIAVDNGIAVKESDT
Ga0209488_109039311	3300027903	Vadose Zone Soil	VLASGFAGAETIAVDDGIAVKESDVATPARGMTMDQVATKFGAPANKVPAVGK
Ga0311327_106815041	3300029883	Bog	MRYRILLLAAVFASGLAGAATVAVDNGIAVKDSDVSTPTRGMTMEQVSTKFGTPVT
Ga0311358_107001311	3300029915	Bog	MNTKNLQVAAVLALGLTGMLGARCEAETIPTDNGIAVKESDVATPSRGMTMDQVAAKFGAPVTKVPAVGKP
Ga0311328_104827721	3300029939	Bog	MRYRILLLAAVFASGLAGAATVAVDNGIAVKDSDVSTPTRGMTMEQVSTKFGTPVTKVPAVGK
Ga0311328_106721211	3300029939	Bog	MKYPILVLAAVLAGGAACAETIAVDNGIAVKESDVATPTRGMSMEQVTSKF
Ga0311342_101619681	3300029955	Bog	MKYRILLLAAALACGTAGAETVAVDNGIAVKESDLATPARGMTMDQV
Ga0311338_102158311	3300030007	Palsa	MKYAMRYRNLLLAAVFASGIAGAATVAVDNGIAVKDSDVAT
Ga0311344_108476492	3300030020	Bog	MQYRSLLIAAVLAGGLANAATVAVDNGIAVKESDVAMPGRGMTMDQVTAKFGAPANKIAAVGKP
Ga0311344_111784551	3300030020	Bog	MRYRILLLAAVFASGLAGAATVAVDNGIAVKDSDVSTP
Ga0311370_120810612	3300030503	Palsa	MKYRILLLAAALACGTAGAETVAVDNGIAVKESDLATPARGMTM
Ga0311355_102759291	3300030580	Palsa	MRYRNLLLAAVLAGGLAGAATVAVDDGIAVKESDVATPARGMTMEQVATKFGT
Ga0311356_104814822	3300030617	Palsa	MRYRNLLLAAVLAGGLAGAATVAVDDGIAVKESDVAT
Ga0311356_107091072	3300030617	Palsa	MRYRILLLAAVLASGLAGAETVAVDNGIAVKESDVPTPTRGMTMD
Ga0311354_114715742	3300030618	Palsa	MRYRNLLLAAVLAGGLAGAATVAVDDGIAVKESDVATPARG
Ga0302317_101953692	3300030677	Palsa	MKYAMRYRNLLLAAVFASGIAGAATVAVDNGIAVKDSDVATPNRGMTMSQVAAKFGAPVSKLAAVGKP
Ga0265763_10145942	3300030763	Soil	MRYRILLLATVLASGLAGAETIAVDNGIAIKQSEVPTPTRGMTMDQVAGKFGAPATKVP
Ga0265723_10122542	3300030872	Soil	MRYQILLLATVLASGLAEAEVIAVDSGIAVKESEVATPARGMS
Ga0265740_10434021	3300030940	Soil	MRYRILLLATVLASGLAGAETIAVDNGIAVKQSEVPTPTR
Ga0170834_1069362661	3300031057	Forest Soil	MRYRILLLATVLASGLAGAETIAIDNGIAVKQSDVAT
Ga0302320_110073451	3300031524	Bog	MNTKNLQVAAVLALGLTGMLGARCEAETIPTDNGIAVKESDVATPSRGMTMDQVAAKFGAPV
Ga0302326_109518591	3300031525	Palsa	MRYRILLLATVLASGLAGAETSAVDNGIAVKQSDVPTPTR
Ga0307474_100790863	3300031718	Hardwood Forest Soil	MRYRYLLLAAVLASGLAGAETIAVDSGIAVKESDVVTPTRGMTMDQVATKFG
Ga0307474_101474533	3300031718	Hardwood Forest Soil	MRYRNLLLAAVLAGGVAGAETIAIDNGIAVKETDVATPTRGMTMDQVATKFGTPVTKVPA
Ga0307474_108744581	3300031718	Hardwood Forest Soil	MRYRILLLAAVLASGLAGAETIAVDNGIAVKQSDVP
Ga0307478_105407302	3300031823	Hardwood Forest Soil	MRYRILLLAAVLAGGVARAETIAVDNGIAVKPSDVSTPTRGMTMDQVADKFGAPASKVPAVG
Ga0306925_122265681	3300031890	Soil	MRYRILLLAAVLASGVAGAETIAVDNGIAVKQSDVA
Ga0307479_114030262	3300031962	Hardwood Forest Soil	MDYRNLMVAAVLATGLSALCGLQPVRAETIAVENGIAVKESDIATPARGMTMDQVSTKFGAPVS
Ga0306920_1021758961	3300032261	Soil	MRYRILLLAAVLASGVAGAETIAVDNGIAVRQSDVATPTRGMTMDQVATKFGAPASKIPAVGN
Ga0334840_196827_1_150	3300033824	Soil	MVAVSSAGAETVATENGIAVKQSDVATPARGMSMDEVAARFGAPVTKVPA
Ga0370514_099279_1_174	3300034199	Untreated Peat Soil	MKYKILLLAALLASGLAGAETIAVDSGIAVKESDVATPARGMTMDQVATKFGAPANKI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071604

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences