Metagenome / Metatranscriptome Family F071578

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F071578
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	73 residues
Representative Sequence	MRVIDQTIMNRLFEVTDEIPLDREAIQVPLVMEGEGKVARTKNGRIEITLPDTDDLGPFLAALPERLRELG
Number of Associated Samples	103
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	70.25 %
% of genes near scaffold ends (potentially truncated)	19.67 %
% of genes from short scaffolds (< 2000 bps)	69.67 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.74

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (96.721 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (9.016 % of family members)
Environment Ontology (ENVO)	Unclassified (31.148 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.902 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 29.29% β-sheet: 12.12% Coil/Unstructured: 58.59%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.74
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.74
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
d.92.1.0: automated matches	d5d7wa1	5d7w	0.63972
d.92.1.17: TTHA0227-like	d2ejqa1	2ejq	0.62129
d.92.1.15: Predicted metal-dependent hydrolase	d1oz9a_	1oz9	0.62063
d.92.1.5: Neurolysin-like	d6h5wa_	6h5w	0.61761
d.92.1.0: automated matches	d4iuwa_	4iuw	0.61439

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF00583	Acetyltransf_1	12.30
PF01636	APH	6.56
PF00005	ABC_tran	4.10
PF01551	Peptidase_M23	4.10
PF00437	T2SSE	4.10
PF13302	Acetyltransf_3	3.28
PF13432	TPR_16	2.46
PF12848	ABC_tran_Xtn	2.46
PF08448	PAS_4	1.64
PF00590	TP_methylase	1.64
PF04389	Peptidase_M28	1.64
PF00871	Acetate_kinase	0.82
PF13555	AAA_29	0.82
PF07648	Kazal_2	0.82
PF00158	Sigma54_activat	0.82
PF02321	OEP	0.82
PF00413	Peptidase_M10	0.82
PF11376	DUF3179	0.82
PF12704	MacB_PCD	0.82
PF00291	PALP	0.82
PF05157	T2SSE_N	0.82
PF13231	PMT_2	0.82
PF01047	MarR	0.82
PF01637	ATPase_2	0.82
PF03358	FMN_red	0.82
PF01336	tRNA_anti-codon	0.82
PF00144	Beta-lactamase	0.82
PF01850	PIN	0.82
PF03992	ABM	0.82
PF02224	Cytidylate_kin	0.82
PF02666	PS_Dcarbxylase	0.82
PF03475	3-alpha	0.82
PF13620	CarboxypepD_reg	0.82
PF01464	SLT	0.82
PF07681	DoxX	0.82
PF01019	G_glu_transpept	0.82
PF00353	HemolysinCabind	0.82
PF00873	ACR_tran	0.82
PF06094	GGACT	0.82
PF13458	Peripla_BP_6	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.64
COG0282	Acetate kinase	Energy production and conversion [C]	0.82
COG0283	Cytidylate kinase	Nucleotide transport and metabolism [F]	0.82
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	0.82
COG0688	Phosphatidylserine decarboxylase	Lipid transport and metabolism [I]	0.82
COG1373	Predicted ATPase, AAA+ superfamily	General function prediction only [R]	0.82
COG1672	Predicted ATPase, archaeal AAA+ ATPase superfamily	General function prediction only [R]	0.82
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.82
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.82
COG2258	N-hydroxylaminopurine reductase YiiM, contains MOSC domain	Defense mechanisms [V]	0.82
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.82
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.82
COG3426	Butyrate kinase	Energy production and conversion [C]	0.82
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.82
COG5549	Predicted Zn-dependent protease	Posttranslational modification, protein turnover, chaperones [O]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.72 %
Unclassified	root	N/A	3.28 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.72 %
Unclassified	root	N/A	3.28 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.72 %
Unclassified	root	N/A	3.28 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	42.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	12.30 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	4.10 %
Unclassified	root	N/A	3.28 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.82 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	36.89 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	4.10 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	4.10 %
Unclassified	root	N/A	3.28 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.64 %
Thermoanaerobaculia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia	0.82 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.82 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.82 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.89 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4.10 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	4.10 %
Unclassified	root	N/A	3.28 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.64 %
unclassified Thermoanaerobaculia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → unclassified Thermoanaerobaculia	0.82 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.82 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.82 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.89 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	4.10 %
Unclassified	root	N/A	3.28 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1.64 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.64 %
Thermoanaerobaculia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → unclassified Thermoanaerobaculia → Thermoanaerobaculia bacterium	0.82 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.82 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.82 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.89 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	4.10 %
Unclassified	root	N/A	3.28 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1.64 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.64 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.82 %
Thermoanaerobaculia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → unclassified Thermoanaerobaculia → Thermoanaerobaculia bacterium	0.82 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.82 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.89 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	4.10 %
Unclassified	root	N/A	3.28 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1.64 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.64 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	0.82 %
Thermoanaerobaculia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → unclassified Thermoanaerobaculia → Thermoanaerobaculia bacterium	0.82 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.82 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	36.89 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	4.10 %
Unclassified	root	N/A	3.28 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1.64 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.64 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.82 %
Thermoanaerobaculia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → unclassified Thermoanaerobaculia → Thermoanaerobaculia bacterium	0.82 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.82 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.82 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000532\|CNAas_1007089	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	727	Open in IMG/M
3300000956\|JGI10216J12902_101388637	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	1009	Open in IMG/M
3300000956\|JGI10216J12902_106380349	All Organisms → cellular organisms → Bacteria	1012	Open in IMG/M
3300001305\|C688J14111_10017277	All Organisms → cellular organisms → Bacteria	2106	Open in IMG/M
3300001686\|C688J18823_10012244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5649	Open in IMG/M
3300001686\|C688J18823_10039238	All Organisms → cellular organisms → Bacteria	3262	Open in IMG/M
3300002568\|C688J35102_118368711	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300002568\|C688J35102_120980056	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	4720	Open in IMG/M
3300003316\|rootH1_10071187	All Organisms → cellular organisms → Bacteria	2786	Open in IMG/M
3300003323\|rootH1_10039868	All Organisms → cellular organisms → Bacteria	2823	Open in IMG/M
3300004081\|Ga0063454_100768214	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	739	Open in IMG/M
3300004081\|Ga0063454_101202881	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	627	Open in IMG/M
3300004781\|Ga0062379_10000152	All Organisms → cellular organisms → Bacteria	12797	Open in IMG/M
3300004798\|Ga0058859_11482836	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300005327\|Ga0070658_10019443	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	5438	Open in IMG/M
3300005330\|Ga0070690_100893713	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300005331\|Ga0070670_100788952	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	857	Open in IMG/M
3300005332\|Ga0066388_105008910	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300005335\|Ga0070666_10011347	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5590	Open in IMG/M
3300005335\|Ga0070666_10146450	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1646	Open in IMG/M
3300005337\|Ga0070682_100392827	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1047	Open in IMG/M
3300005339\|Ga0070660_101127585	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300005347\|Ga0070668_101620406	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	593	Open in IMG/M
3300005347\|Ga0070668_101730339	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	574	Open in IMG/M
3300005353\|Ga0070669_100163325	All Organisms → cellular organisms → Bacteria	1732	Open in IMG/M
3300005354\|Ga0070675_101704514	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	581	Open in IMG/M
3300005366\|Ga0070659_101438714	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300005367\|Ga0070667_100023853	All Organisms → cellular organisms → Bacteria → Proteobacteria	5080	Open in IMG/M
3300005434\|Ga0070709_10038607	All Organisms → cellular organisms → Bacteria	2925	Open in IMG/M
3300005434\|Ga0070709_10867345	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	712	Open in IMG/M
3300005436\|Ga0070713_101166093	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	745	Open in IMG/M
3300005437\|Ga0070710_10321944	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300005534\|Ga0070735_10523651	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	705	Open in IMG/M
3300005547\|Ga0070693_100181819	All Organisms → cellular organisms → Bacteria	1354	Open in IMG/M
3300005548\|Ga0070665_100000243	All Organisms → cellular organisms → Bacteria	90522	Open in IMG/M
3300005564\|Ga0070664_102372343	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300005587\|Ga0066654_10013752	All Organisms → cellular organisms → Bacteria → Proteobacteria	3097	Open in IMG/M
3300005587\|Ga0066654_10018244	All Organisms → cellular organisms → Bacteria	2767	Open in IMG/M
3300005614\|Ga0068856_101012468	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	849	Open in IMG/M
3300005617\|Ga0068859_101765873	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	683	Open in IMG/M
3300005842\|Ga0068858_101754680	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	613	Open in IMG/M
3300006173\|Ga0070716_100103865	All Organisms → cellular organisms → Bacteria → Proteobacteria	1748	Open in IMG/M
3300006173\|Ga0070716_101310299	Not Available	586	Open in IMG/M
3300006794\|Ga0066658_10439299	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	710	Open in IMG/M
3300006871\|Ga0075434_100137675	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2461	Open in IMG/M
3300006903\|Ga0075426_10000810	All Organisms → cellular organisms → Bacteria	21997	Open in IMG/M
3300006904\|Ga0075424_101116285	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300007004\|Ga0079218_13667877	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	522	Open in IMG/M
3300009177\|Ga0105248_10669387	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1171	Open in IMG/M
3300009551\|Ga0105238_13045769	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300009789\|Ga0126307_10716288	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300009840\|Ga0126313_10312143	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1232	Open in IMG/M
3300010039\|Ga0126309_10000034	All Organisms → cellular organisms → Bacteria	44656	Open in IMG/M
3300010045\|Ga0126311_10053424	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2608	Open in IMG/M
3300010045\|Ga0126311_10287600	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1233	Open in IMG/M
3300010397\|Ga0134124_12228064	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300010400\|Ga0134122_11556278	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	683	Open in IMG/M
3300010401\|Ga0134121_10024630	All Organisms → cellular organisms → Bacteria	4839	Open in IMG/M
3300010401\|Ga0134121_11031514	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300010401\|Ga0134121_13023175	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300010403\|Ga0134123_10012984	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5731	Open in IMG/M
3300012212\|Ga0150985_102373909	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1038	Open in IMG/M
3300012212\|Ga0150985_109640862	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300012212\|Ga0150985_122433489	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	765	Open in IMG/M
3300012360\|Ga0137375_10000292	All Organisms → cellular organisms → Bacteria	51157	Open in IMG/M
3300012469\|Ga0150984_117161000	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	605	Open in IMG/M
3300012469\|Ga0150984_120602351	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300012929\|Ga0137404_10000735	All Organisms → cellular organisms → Bacteria	21643	Open in IMG/M
3300012958\|Ga0164299_11222899	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	570	Open in IMG/M
3300012977\|Ga0134087_10316600	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	736	Open in IMG/M
3300012986\|Ga0164304_10156494	All Organisms → cellular organisms → Bacteria	1442	Open in IMG/M
3300012989\|Ga0164305_10191993	All Organisms → cellular organisms → Bacteria → Proteobacteria	1428	Open in IMG/M
3300012989\|Ga0164305_10377468	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300014271\|Ga0075326_1013085	All Organisms → cellular organisms → Bacteria → Acidobacteria	1979	Open in IMG/M
3300014326\|Ga0157380_11051417	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	850	Open in IMG/M
3300015199\|Ga0167647_1002578	All Organisms → cellular organisms → Bacteria	6541	Open in IMG/M
3300015357\|Ga0134072_10065507	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1045	Open in IMG/M
3300018422\|Ga0190265_10000096	All Organisms → cellular organisms → Bacteria	94083	Open in IMG/M
3300018431\|Ga0066655_10038995	All Organisms → cellular organisms → Bacteria	2377	Open in IMG/M
3300018431\|Ga0066655_11410158	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300018432\|Ga0190275_10244860	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1726	Open in IMG/M
3300018432\|Ga0190275_10681467	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300018433\|Ga0066667_10365980	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1153	Open in IMG/M
3300018468\|Ga0066662_10714198	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	959	Open in IMG/M
3300018476\|Ga0190274_10000009	All Organisms → cellular organisms → Bacteria	514771	Open in IMG/M
3300018920\|Ga0190273_10197450	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1255	Open in IMG/M
3300019789\|Ga0137408_1168698	All Organisms → cellular organisms → Bacteria → Proteobacteria	4501	Open in IMG/M
3300020154\|Ga0196965_1001202	All Organisms → cellular organisms → Bacteria	10555	Open in IMG/M
3300021339\|Ga0193706_1000015	All Organisms → cellular organisms → Bacteria	282014	Open in IMG/M
3300022878\|Ga0247761_1013739	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1383	Open in IMG/M
3300023268\|Ga0247765_1003934	All Organisms → cellular organisms → Bacteria → Proteobacteria	4607	Open in IMG/M
3300025898\|Ga0207692_10273786	All Organisms → cellular organisms → Bacteria	1019	Open in IMG/M
3300025903\|Ga0207680_10856487	All Organisms → cellular organisms → Bacteria → Acidobacteria	652	Open in IMG/M
3300025906\|Ga0207699_10450933	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	923	Open in IMG/M
3300025909\|Ga0207705_10006622	All Organisms → cellular organisms → Bacteria	8573	Open in IMG/M
3300025926\|Ga0207659_11275097	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	631	Open in IMG/M
3300025936\|Ga0207670_10114549	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1949	Open in IMG/M
3300025939\|Ga0207665_11051022	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300025986\|Ga0207658_10461077	All Organisms → cellular organisms → Bacteria	1126	Open in IMG/M
3300026308\|Ga0209265_1025943	All Organisms → cellular organisms → Bacteria → Proteobacteria	1816	Open in IMG/M
3300026308\|Ga0209265_1212902	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300026557\|Ga0179587_10974175	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
3300027524\|Ga0208998_1012442	All Organisms → cellular organisms → Bacteria	1326	Open in IMG/M
3300027616\|Ga0209106_1096088	Not Available	665	Open in IMG/M
3300027716\|Ga0209682_10000043	All Organisms → cellular organisms → Bacteria → Acidobacteria	36168	Open in IMG/M
3300028379\|Ga0268266_10003982	All Organisms → cellular organisms → Bacteria	14327	Open in IMG/M
3300031231\|Ga0170824_127777726	All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → unclassified Thermoanaerobaculia → Thermoanaerobaculia bacterium	525	Open in IMG/M
3300031239\|Ga0265328_10352675	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300031366\|Ga0307506_10000044	All Organisms → cellular organisms → Bacteria	55080	Open in IMG/M
3300031548\|Ga0307408_101861248	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300031576\|Ga0247727_10484453	All Organisms → cellular organisms → Bacteria → Acidobacteria	967	Open in IMG/M
3300031616\|Ga0307508_10004608	All Organisms → cellular organisms → Bacteria	13399	Open in IMG/M
3300031820\|Ga0307473_10500561	All Organisms → cellular organisms → Bacteria → Acidobacteria	820	Open in IMG/M
3300031902\|Ga0302322_101193206	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300031938\|Ga0308175_100004867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	9468	Open in IMG/M
3300032002\|Ga0307416_101997316	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	683	Open in IMG/M
3300032174\|Ga0307470_11419989	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	574	Open in IMG/M
3300032180\|Ga0307471_101633976	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300034000\|Ga0334918_068851	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300034007\|Ga0334936_029002	Not Available	1156	Open in IMG/M
3300034194\|Ga0370499_0064644	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.21%
Host-Associated	Host-Associated	32.79%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.57%
Plants	Host-Associated → Plants	31.97%
Aquatic	Environmental → Aquatic	1.64%
Human	Host-Associated → Human	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.30%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.74%
Freshwater	Environmental → Aquatic → Freshwater	1.64%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.64%
Rhizome	Host-Associated → Plants → Rhizome	1.64%
Peat	Environmental → Terrestrial → Peat	0.82%
Cave	Environmental → Terrestrial → Cave	0.82%
Digestive System	Host-Associated → Human → Digestive System	0.82%
Roots	Host-Associated → Plants → Roots	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.34%
Loam	Environmental → Terrestrial → Soil → Loam	18.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	17.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.28%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.46%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.64%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.64%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	1.64%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.64%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	1.64%
Sand	Environmental → Terrestrial → Soil → Sand	0.82%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.82%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.82%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.82%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	17.21%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.66%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.02%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.56%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	5.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.10%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.28%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.46%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.64%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.64%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	1.64%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.64%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	1.64%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.82%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.82%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.82%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.82%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.82%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.82%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.02%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	9.02%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.74%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	5.74%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.92%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	4.10%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.10%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.28%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.28%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.46%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.46%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.46%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	1.64%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.64%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.64%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.64%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	1.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.64%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.64%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.82%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.82%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.82%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.82%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.82%
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	0.82%
Hypolithic Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust	0.82%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.82%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.82%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.82%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.82%
Quercus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere	0.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.82%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.82%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000532	Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNA_Illumina_Assembled	Host-Associated	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003316	Sugarcane root Sample L1	Host-Associated	Open in IMG/M
3300003323	Sugarcane root Sample H1	Host-Associated	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004781	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare2Fresh	Environmental	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014271	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D2	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015199	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-2c, rock/snow interface)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020154	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_20	Environmental	Open in IMG/M
3300021339	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c1	Environmental	Open in IMG/M
3300022878	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L111-311C-4	Environmental	Open in IMG/M
3300023268	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L106-311C-6	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027524	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027716	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare2Fresh (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031239	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG	Host-Associated	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031576	Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25	Environmental	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034000	Biocrust microbial communities from Mojave Desert, California, United States - 14HMC	Environmental	Open in IMG/M
3300034007	Biocrust microbial communities from Mojave Desert, California, United States - 32SMC	Environmental	Open in IMG/M
3300034194	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_17	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
CNAas_10070892	3300000532	Quercus Rhizosphere	MIPSMRVIDQTAMNRLFEVTDEIPVDRESIQVPLVMEGDGKVARLKNGRIEITLPDADDLGPFLASLPDRLRDIGAG*
JGI10216J12902_1013886372	3300000956	Soil	MRVIDQQIMNRLFEVTDEIPLDREAITVPLLMEGEGKVAKTSRGKIEITLPDTDNLGPFLAALPERIRILE*
JGI10216J12902_1063803492	3300000956	Soil	MRVIDQAVMNQLFEVTDEIPVDREAIQVPLVMEGEGKVVRLKNGRIEITLPDTEDLGPFLASLPDRLRDLGTA*
C688J14111_100172773	3300001305	Soil	MRVIDQKIMNRLFEVTDEVPLDRESIQVPLVMEGEGKVARTKNGRIEITLPDTDDLGPFLAALPERVRGLG*
C688J18823_100122446	3300001686	Soil	MNRLFEVTDEVPLDRESIQVPLVMEGEGKVARTKNGRIEITLPDTDDLGPFLAALPERVRGLG*
C688J18823_100392385	3300001686	Soil	MRVIDQKIMNRLFEVTDEVPLDRESIQVPLVMEGEGKVARTKNGRIEITLPDTDDLGPFLAALPERLRELG*
C688J35102_1183687111	3300002568	Soil	MRIINQNIMNQLFAVTDEIPLDREAVQVPLAMEGEGKVERNPKGRIEITLPDADDLGPFLAALPGRVRELG*
C688J35102_1209800561	3300002568	Soil	VTDEVPLDRESIQVPLVMEGEGKVARTKNGRIEITLPDTDDLGPFLAALPERVRGLG*
rootH1_100711873	3300003316	Sugarcane Root And Bulk Soil	MRVIDQQIMNRLFEVTDEIPLDREAVQVPLVMEGEGKVVRTKSGRIEITLPDTEDLGPFLAALPARLRELGS*
rootH1_100398684	3300003323	Sugarcane Root And Bulk Soil	MSQVFEVTDEMPLSREAIQVPLVMQGEGKVERLKNGRFEITLPDTDDLGPFLSGLAERLLAAGAVPEAEI*
Ga0063454_1007682142	3300004081	Soil	MRVIDQRVMNRLFEVTDEIPLDREAIQVPLVMAGEGKVARTKNGRIEITLPDADDLGPFLTALPVRLRELEAGGSPT*
Ga0063454_1012028811	3300004081	Soil	RLFEVTDEVPLDRESIQVPLVMEGEGKVARTKNGRIEITLPDTDDLGPFLAALPERVRGLG*
Ga0062379_1000015212	3300004781	Wetland Sediment	MRVIDQAVMNRLFEVTDEIPLDREALQVPLVMEGEGRLARLKNGRIEITLPDTGDLGPFLASLPERLRELGAG*
Ga0058859_114828362	3300004798	Host-Associated	MRVIDQTIMNLLFEVTDEIPLDREAIQVPLVMTGEGKVGRTRNGRIEIALPDTDDLGPFLAALPERLRALDAAEP*
Ga0070658_100194432	3300005327	Corn Rhizosphere	MRVIDQAIMNRLFEVTDEIPLDREALEVPLLMQGEGKVARTKKGKIEITLPDTDELGPFLAELPERVRGI*
Ga0070690_1008937131	3300005330	Switchgrass Rhizosphere	MRVLDQETMRRLFAVTDEVGLSREAITVPLAMEGEGRVARTGKGRIEITLPDADDLGPFLASLPERLREIGA*
Ga0070670_1007889522	3300005331	Switchgrass Rhizosphere	MRVIDQTIMNLLFEVTDEIPLDREAIQVPLVMTGEGKVGRTRNGRIEITLPDTDDLRPFLAALPERLRALDAAEP*
Ga0066388_1050089102	3300005332	Tropical Forest Soil	MRVIDPQIMNRVFEVTDEMPLSREAIQVPLILQGEGKVERLKNGRFEITLPDTDDLGPFLAGLANRLLEAGAVPE*
Ga0070666_100113475	3300005335	Switchgrass Rhizosphere	MRVIDQAIMNRLFEVTDEIPLDREALEVPLLMQGEGKVARTKKGKIEITLPDTDDLGPFLAELPERVRGV*
Ga0070666_101464503	3300005335	Switchgrass Rhizosphere	DQETMRRLFAVTDEVGLSREAITVPLAMEGEGRVARTGKGRIEITLPDADDLGPFLASLPERLREIGA*
Ga0070682_1003928271	3300005337	Corn Rhizosphere	MRVIDQTIMNLLFEVTDEIPLDREAIQVPLVMAGEGKVERTRNGRIEITLPDTDDLGPFLAALPERLRALESAEP*
Ga0070660_1011275851	3300005339	Corn Rhizosphere	FCLEEGEMRVIDQTIMNLLFEVTDEIPLDREAIQVPLVMTGEGKVGRTRNGRIEITLPDTDDLRPFLAALPERLRALDAAEP*
Ga0070668_1016204061	3300005347	Switchgrass Rhizosphere	MRVIDQTIMNLLFEVTDEIPLDREAIQVPLVMTGEGKVGRTRNGRIEITLPDTDDLGPFLAALPERLRALDAAEP*
Ga0070668_1017303392	3300005347	Switchgrass Rhizosphere	MRVIDQTVMNRLFEVTDEIPLDREALQVPLVMEGDGKVARLKSGRIEITLPDTDDLGPFLASLPDRLQNL*
Ga0070669_1001633253	3300005353	Switchgrass Rhizosphere	MRVIDQTVMNRLFEVTDEIPVDREAIQVPLVMEGDGKVVRLKNGRIDITLPDSDDLDPF
Ga0070675_1017045141	3300005354	Miscanthus Rhizosphere	MRVIDQQIMNRLFEVTDEIPLEREAIQVPLVMAGEGRIARTKNGRIEITLPDTDDLAPFLAALPGRLRELEA*
Ga0070659_1014387141	3300005366	Corn Rhizosphere	MRVIDQAIMNRLFEVTDEIPLDREALEVPLLMQGEGKVARTKKGKIEITLPDTEDLGPFLAELPERVRGI*
Ga0070667_1000238532	3300005367	Switchgrass Rhizosphere	MRVIDPQIMNRVFEVTDEMPLSREAIQVPLVLQGEGKVERLKNGRFEITLPDTDDLGPFLAGLAGRLLAAGAVPG*
Ga0070709_100386073	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LNVDSVPEVFLLDRLPYNPAMRVIDQGIMNRLFEVTDEIPLDREAIQVPLVMEGEGKVARAKNGRIEITLPDTDDLGPFLAALPERLRELG*
Ga0070709_108673451	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	IINQSIMNELFAVTDEIPLDREAVQVPLAMEGEGKVERTAKGRVEITLPDRQDLGPFLAALPARVRALG*
Ga0070713_1011660931	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LNVDSVPEVFLLDRLPYNPAMRVIDQGIMNRLFEVTDEIPLDREAIQVPLVMEGEGKVARAKNGRIEITLPDTGDLGPFLAALPERLRELG*
Ga0070710_103219442	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MRVLDQATMGRLFTVTDEMGLSREAITVPLAMQGEGRVVRSRTGRFEITLPDADDLGPFLAALPGRLRELGA*
Ga0070735_105236511	3300005534	Surface Soil	MRIINQSIMNQLFAVTDEIPLDREAVQVPLAMEGEGKVERTAKGRIEITLPDRQDLGPFLAALPARVRALG*
Ga0070693_1001818191	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MRVIDQKVMNRLFEVTDEIPLDREAIQVPLVMEGEGKVARTKNGRIEITLPDADDLGLFLAALPERLRELGA*
Ga0070665_10000024334	3300005548	Switchgrass Rhizosphere	MRVIDQTIMNLLFEITDEIPLDREAIQVPLVMTGEGKVGRTRNGRIEITLPDTDDLRPFLAALPERLRALDTAEP*
Ga0070664_1023723432	3300005564	Corn Rhizosphere	DPKIMNQVFEVTDEMPLSREAIQVPLVMQGEGNVERLKNGRFEITLPDTDDLRPFLSGLAERLLGVGAVPEAEP*
Ga0066654_100137522	3300005587	Soil	MRVIDPQIMSRVFAVTDEMPLSREAVQVPLVMQGEGKVERLKNGRFEITLPDTDDLGPFLAGLAERLRALGA*
Ga0066654_100182444	3300005587	Soil	VSRRRAVSLPEDEPAMRVIDQGIMNRLFEVTDEIPLDREAIQVPLVMEGEGKVARAKNGRIEITLPDTDDLGPFLAALPERLRELG*
Ga0068856_1010124681	3300005614	Corn Rhizosphere	AMRVIDQGIMNRLFEVTDEIPLDREAVQVPLVMEGEGKVARTKNGRIEITLPDTDDLGPFLAGLPERLRELGG*
Ga0068859_1017658731	3300005617	Switchgrass Rhizosphere	VIDQGIMNRLFEVTDEVPLSREAVEVPLVMEGEGKVEKNRRGRFEITLPDTDDLEALPAALPARLRELGAGEA*
Ga0068858_1017546802	3300005842	Switchgrass Rhizosphere	MRVLDQETMRRLFAVTDEVGVSREAITVPLAMEGEGRVARTGKGRIEITLPDADDLGPFLASLPERLREIGA*
Ga0070716_1001038653	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MRVIDQGTMNRLFEVTDEIPLDREAIQVPLVMEGEGKVARTKNGRIEITLPDADDLGPFLAALPE
Ga0070716_1013102992	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MRIVDQRIMNQLFSVTDEIPLDREALEVPLLMEGDGRVARTKKGKVEITLPDAEDLGPFLAALPERLRALAGD*
Ga0066658_104392992	3300006794	Soil	MRVIDQKIMNRLFEVTDEIPLDREAVQVPLVMEGEGKVARAKNGRIEITLPDTDDLGPFLAALPERLRELG*
Ga0075434_1001376752	3300006871	Populus Rhizosphere	MRIVDQRIMNQLFSVTDEIPVDREALQVPLLMEGDGKVARTKRGKIEITLPDTDDLGPFLASLPERLRALNGD*
Ga0075426_1000081012	3300006903	Populus Rhizosphere	MRVLDPQIMNRVFAVIDEIPLSREAIQVPLVLQGEGKVERLKNGRFEITLPDTDDLGPFLAGLAERLAALGAVPDPIPSDLADEEQ*
Ga0075424_1011162851	3300006904	Populus Rhizosphere	MRVLDPQIMNRVFEVTDEIPLSREAIQVPLVLQGEGKVERLKNGRFEITLPDTDDLSPFLAGLAERLRAAGAVPDPE*
Ga0079218_136678772	3300007004	Agricultural Soil	MRVLTPQIMNQLFEVTYALELSREAIQVPLVLEGEGKIQRLKSGKIEITLPDTDDLGPFLSSLPERLRTLE*
Ga0105248_106693872	3300009177	Switchgrass Rhizosphere	MRVIDPKIMNQVFEVTDEMPLSREAIQVPLVMQGEGKVERLKSGRFEITLPDTDDLGPFLSGLAKRLLEAGAVPEAEP*
Ga0105238_130457692	3300009551	Corn Rhizosphere	MRVIDPQIMNRVFEVTDEMPLSREAIQVPLVMQGEGKVERLKNGRFEITLPDTEDLGPYLAVLAGRLLAAGAVPG*
Ga0126307_107162882	3300009789	Serpentine Soil	TPQIMNQLFEVTDALEMSREAIQVPLVLEGEGKVQRLKSGKIEITLPDTDDLGPFLSSLPERLRTLE*
Ga0126313_103121433	3300009840	Serpentine Soil	MRVIDQTIMNLLFEVTDEIPLDREAIQVPLVMTGEGKVGRTRNGRIEITLPDTDDLRPFLAALPERLRALGAAEP*
Ga0126309_1000003427	3300010039	Serpentine Soil	MMPAMRVINQDVMNRLFEVTDEIPLDREALQVPLVMEGEGKVARLKNGRIEITLPDTDDLGPFLASLPNRLRELEAG*
Ga0126311_100534244	3300010045	Serpentine Soil	MMPAMRVINQDVMNRLFEVTDEIPLDREALQVPLVMEGEGKLARLKNGRIEITLPDTDDLGAFLESLPDRLRELAAG*
Ga0126311_102876001	3300010045	Serpentine Soil	MNQLFEVTDALELSREAIQVPLVLEGGGKLQRLKSGKIEITLPDTDDLGPFLSSLPERLRTLE*
Ga0134124_122280642	3300010397	Terrestrial Soil	MRVIDQGIMNRLFEVTDEIPLDREAIQVPLVMAGEGKVARTKNGRIEITLPDTDDLGPFLAALPERVRELG*
Ga0134122_115562782	3300010400	Terrestrial Soil	MRVIDQTAMNSLFAVTDEIPVDREAIQVPLVMEGEGKVARLKNGRIEITLPDSDDLGPFLASLPDRLRDLGAA*
Ga0134121_100246306	3300010401	Terrestrial Soil	MRVIDQTAMNRLFEVTDEIPLDREAIQVPLVMEGEGKIARLKNGRIEITLPDTDDLGPFLASLPDRLRAV*
Ga0134121_110315141	3300010401	Terrestrial Soil	MRIVDQQIMNQLFSVTDEIPVDREALQVPLAMEGEGRIAKTKKGKIEITLPDAEDLGPFLAALPERLRALDEG*
Ga0134121_130231752	3300010401	Terrestrial Soil	MRVIDPKIMNQVFEVTDEMPLSREAIQVPLVMQGEGKVERLKNGRFEITLPDTDDLGPFLSGLAKRLLEAGAVPEAEL*
Ga0134123_100129843	3300010403	Terrestrial Soil	MRVIDQTVMNQLFEVTDEIPLDREAVQVPLVMEGEGKVARLKNGRIEITLPDADDLGPFLAGLPDRLRDLGAA*
Ga0150985_1023739092	3300012212	Avena Fatua Rhizosphere	MRVIDQKIMNRLFEVTDEVPLDREAIQVPLVMEGEGKVARTKNGRIEITLPDTDDLGPFLAALPERLRELG*
Ga0150985_1096408622	3300012212	Avena Fatua Rhizosphere	MRVIDQAIMNLLFEVTDEIPLDREAIQVPLVMTGEGKVGRTRNGRIEITLPDTDDLGPFLAALPERLRALDAAEP*
Ga0150985_1224334891	3300012212	Avena Fatua Rhizosphere	MRVLEQATMNRLFEVTDEIPLDREAIQVPLVMEGEGKVARTRNGRIEITLPDADDLGPFLAALPERLRALG*
Ga0137375_1000029216	3300012360	Vadose Zone Soil	MRVIDQAAMNRLFEVTDEIPLDREAIQVPLVMEGEGKVARLKNGRIEITLPDADDLGPFLASLPDRLRAV*
Ga0150984_1171610002	3300012469	Avena Fatua Rhizosphere	MRVIDQKIMNRLFAVTDDVPLDREAIQVPLVMEGEGKVARTKSGRIEITLPDTDDLGPFLAALPERLRALPE*
Ga0150984_1206023511	3300012469	Avena Fatua Rhizosphere	EDEPAMRVIDQGIMNRLFEVTDEVPLDREAIQVPLVMEGEGKVARTKNGRIEITLPDTDDLGPFLAALPQRLREQG*
Ga0137404_100007357	3300012929	Vadose Zone Soil	MPGKEGRISYDPPMRVLDQTTMGRLFAVTDEMGLSREAVTVPLAMQGEGRVARTRTGRFEITLPDADDLEPFLAALPGRLRELGA*
Ga0164299_112228992	3300012958	Soil	VRILDQAAMHRVFDVTDALGLSREAVTVPLELAGEGAVRRLASGRYEITLPDTDDLGPFLAALPERLRALGC*
Ga0134087_103166002	3300012977	Grasslands Soil	MRVIDQKIMNRLFEVTDEVPLDREAVQVPLVMEGEGKVARAKNGRIEITLPDTDDLGPFLAALPERLRELG*
Ga0164304_101564942	3300012986	Soil	MRVIDQATMNLLFEVTDEIPLDREAIQVPLVMTGEGKVGRTRNGRIEITLPDTDDLGPFLAALPERLRALDAAEP*
Ga0164305_101919933	3300012989	Soil	MRIINQNIMNQLFAVTDEIPLDREAVQVPLAMEGEGKVERTPKGRIEITLPDAEDLGPFLAALPARVRELG*
Ga0164305_103774683	3300012989	Soil	MNRLFEVTDEIPLDREAIQVPLVMEGEGKVSRARNGRVEITLPDTDDLGPFLAALPARLRELPG*
Ga0075326_10130851	3300014271	Natural And Restored Wetlands	MRVIDQKIMNRLFEVTDEIPVEREAIQVPLAMEGDGKVQRTKAGRIEITLPDADDLGPFLASLPERLRALGPGG*
Ga0157380_110514171	3300014326	Switchgrass Rhizosphere	MRVIDQQIMSRLFEVTDEIPLDSEAVQVPLVMEGEGKVAWTKNGRIEITLPDTDDLGPFLAALPARLRELGS*
Ga0167647_100257813	3300015199	Glacier Forefield Soil	MRILDQATMGRLFAVTDELGLSRESLTVPLAMEGEGRVVRKQTGRIEITLPDADDLDPFL
Ga0134072_100655071	3300015357	Grasslands Soil	MRVIDQGIMNRLFEVTDEIPLDREAVQVPLVMEGEGKVARAKNGRIEITLPDTDDLGPFLAALPARLRELEG*
Ga0190265_1000009627	3300018422	Soil	MRVLTPDIMNRLFEVTDALEVSREAIQVPLVLEGEGQVRRLKNGRIEITLPDTDDLGPFLSALPERLRALD
Ga0066655_100389954	3300018431	Grasslands Soil	MRVIDQGIMNRLFEVTDEIPLDREAIQVPLVMEGEGKIARAKNGRIEITLPDTDDLGPFLAALPERLRELG
Ga0066655_114101582	3300018431	Grasslands Soil	MRVIDQGIMNRLFEVTDEIPLDREAVQVPLVMEGEGKVARAKNGRIEITLPDTDDLGPFLAALPARLRELEG
Ga0190275_102448602	3300018432	Soil	VRVLTPQIMNQLFEVTDALELSREAIQVPLVLDGEGKVRRLKSGKVEITLPDTDDLGPFLSSLPERLRTLE
Ga0190275_106814672	3300018432	Soil	MRVIDQKVMNRVFDVTDELEIDRESITVPLVQEGEGTVGRNARGRIEIVLPDVDDLGPFLASLPERLRELI
Ga0066667_103659803	3300018433	Grasslands Soil	MRVIDQTIMNRLFEVTDEIPLDREAIQVPLVMEGEGKVARTKNGRIEITLPDTDDLGPFLAALPERLRELG
Ga0066662_107141982	3300018468	Grasslands Soil	AVSLPEDEPAMRVIDQGIMNRLFEVTDEVPLDREAIQVPLVMAGEGKVARAKNGRIEITLPDTDDLGPFLAALPARLRELG
Ga0190274_10000009321	3300018476	Soil	MMPAMRVINQDVMNRLFAVTDEIPLDREALQVPLVMEGAGKVARLKSGRIEITLPDTEDLGPFLGSLPDRLRELAAG
Ga0190273_101974502	3300018920	Soil	MRVIDQTIMNLLFEVTDEIPLDREAIQVPLVMTGEGKVGRTRNGRIEITLPDTDDLRPFLAALPERLRALDAAEP
Ga0137408_11686983	3300019789	Vadose Zone Soil	MPGKEGRISYDPPMRVLDQTTMGRLFAVTDEMGLSREAVTVPLAMQGEGRVARTRTGRFEITLPDADDLEPFLAALPGRLRELGA
Ga0196965_10012025	3300020154	Soil	MRVIDQQIMNRLFEVTDDIPVSREALEVPLVMEGEGKVEKNRRGRFEITLPDTGDLEPFLAALPARLRALL
Ga0193706_1000015219	3300021339	Soil	MRVIDQTIMNLLFEVTDEIPLDREAIQVPLVMTGEGKVGRTRNGRIEITLPDTDDLGPFLAALPERLRALVAAEP
Ga0247761_10137392	3300022878	Plant Litter	MRVIDQTIMNLLFEVTDEIPLDREAIQVPLVMTGEGKVGRTRNGRIEITLPDTDDLGPFLAALPERLRALDAAEP
Ga0247765_10039345	3300023268	Plant Litter	MRVIDPKIMNQVFEVTDEMPLSREAIQVPLVMQGEGKVERLKNGRFEITLPDTEDLGPFLSLLAVRLLGAGAVPEEEP
Ga0207692_102737862	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MRVLDQATMGRLFTVTDEMGLSREAITVPLAMQGEGRVVRSRTGRFEITLPDADDLGPFLAALPGRLRELGA
Ga0207680_108564872	3300025903	Switchgrass Rhizosphere	KISPMRVLDQETMRRLFAVTDEVGLSREAITVPLAMEGEGRVARTGKGRIEITLPDADDLGPFLASLPERLREIGA
Ga0207699_104509332	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	LNVDSVPEVFLLDRLPYNPAMRVIDQGIMNRLFEVTDEIPLDREAIQVPLVMEGEGKVARAKNGRIEITLPDTDDLGPFLAALPERLRELG
Ga0207705_100066222	3300025909	Corn Rhizosphere	MRVIDQAIMNRLFEVTDEIPLDREALEVPLLMQGEGKVARTKKGKIEITLPDTDELGPFLAELPERVRGI
Ga0207659_112750971	3300025926	Miscanthus Rhizosphere	MRVIDQQIMNRLFEVTDEIPLEREAIQVPLVMAGEGRIARTKNGRIEITLPDTDDLAPFLAALPGRLRELEA
Ga0207670_101145492	3300025936	Switchgrass Rhizosphere	VRVIDQTIMNLLFEVTDEIPLDREAIQVPLVMTGEGKVGRTRNGRIEIALPDTDDLGPFLAALPERLRALDAAEP
Ga0207665_110510221	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MRVIDQGTMNRLFEVTDEIPLDREAIQVPLVMEGEGKVARTKNGRIEITLPDADDLGPFLAALPEKLREVEAA
Ga0207658_104610772	3300025986	Switchgrass Rhizosphere	MRVIDPQIMNRVFEVTDEMPLSREAIQVPLVLQGEGKVERLKNGRFEITLPDTDDLGPFLAGLAGRLLAAGAVPG
Ga0209265_10259432	3300026308	Soil	MSRVFAVTDEMPLSREAVQVPLVMQGEGKVERLKNGRFEITLPDTDDLGPFLAGLAERLRALGA
Ga0209265_12129022	3300026308	Soil	RLFEVTDEIPLDREAVQVPLVMEGEGKVARAKNGRIEITLPDTDDLGPFLAALPERLREL
Ga0179587_109741751	3300026557	Vadose Zone Soil	MRIVDQRIMNQLFSVTDEIPLDREAFQVPLLMEGDGRVTRTKKGRIEITLPDAEDLGPFLATLPERLRALDGG
Ga0208998_10124422	3300027524	Forest Soil	MRVIEQSTMNRLFEVTDEIPLDREAIQVPLVMEGDGRVVRTKNGRIEITLPDADDLAPFLAALPDRLRALG
Ga0209106_10960881	3300027616	Forest Soil	EEDFPAMRIVDQQIMNQLFSVTDEIPVDREALQVPLVMEGEGRIARSKRGKIEITLPDAEDLGPFLAALPERLRALDGG
Ga0209682_100000436	3300027716	Wetland Sediment	MRVIDQAVMNRLFEVTDEIPLDREALQVPLVMEGEGRLARLKNGRIEITLPDTGDLGPFLASLPERLRELGAG
Ga0268266_100039826	3300028379	Switchgrass Rhizosphere	MRVIDQTIMNLLFEITDEIPLDREAIQVPLVMTGEGKVGRTRNGRIEITLPDTDDLRPFLAALPERLRALDTAEP
Ga0170824_1277777262	3300031231	Forest Soil	MGRLFAVTDELGLSREALTVPLAMEGEGRVARTRTGRIEITLPDVADLSPFLAALPERLRELG
Ga0265328_103526751	3300031239	Rhizosphere	MRVIDPQIMNRVFEVTDEMPLSREAIQVPLVMQGEGKVERLKNGRFEITLPDTDDLGPFLSVLAGRLLAAG
Ga0307506_1000004431	3300031366	Soil	MRVIDPKIMHQVFAVTDEMPLSREAIQVPLVMQGEGKVERLKTGRFEITLPDTDDLGPFLSGLAERLLGAGAVPEAEP
Ga0307408_1018612481	3300031548	Rhizosphere	MRVIDQQIMNRLFEVTDEIPLDREALTVPLLMEGEGKVTKTSRGKIEITLPDTDDLGPFLAALPERIRELGS
Ga0247727_104844532	3300031576	Biofilm	VRTIDQSIMNRLFEVTDALDVSREAITVPLVMEGEGTVARDRRGRFEITLPDADDLEPFLAGLPDRLRT
Ga0307508_100046082	3300031616	Ectomycorrhiza	MRVIDPQIMNRVFEVTDEMPLSREAIQVPLVMQGEGKVERLKNGRFEITLPDTDDLGPFLSALAGRLLAAGAVPQ
Ga0307473_105005611	3300031820	Hardwood Forest Soil	MRLLDQRAMGQVFAVTDEMGLSREALSVPLAMEGEGQVTRLRTGRFEITLPDADDLGPFLAALPDRLRALGA
Ga0302322_1011932062	3300031902	Fen	MRVIDPQIMNRVFEVTDEMPLSREAIQVPLVLQGEGKVERLKNGRFEITLPDTDDLGPFLAGLAGRLLAAGAV
Ga0308175_1000048676	3300031938	Soil	MRVIDQGIMNRLFEVTDEIPLDREAVQVPLVMAGEGKVARAKNGRIEITLPDTDDLGPFLTALPARLRELEG
Ga0307416_1019973161	3300032002	Rhizosphere	LRVLTPQVMNQLFEVTDALELSREAIQVPLVLAGEGKIQRLKSGRIEITLPDTDDLGPFLSSLPERLR
Ga0307470_114199892	3300032174	Hardwood Forest Soil	MRVIDQTVMNQLFEVTDEIPVDREAVQVPLVMEGEGKVARLKNGRIEITLPDTDDLGPFLAGLPDRLRDLGAA
Ga0307471_1016339762	3300032180	Hardwood Forest Soil	MRVIDQGIMNRLFEVTAEIPLDREAIQVPLVMEGEGKVARLKNGRIEITLPDADDLGPFLAALPERVRELG
Ga0334918_068851_302_496	3300034000	Hypolithic Biocrust	MNRLFEVTDEIPLDREAIQVPLVMEGEGKVARAKNGRIEITLPDADDLGPFLAALPARLRELGS
Ga0334936_029002_425_637	3300034007	Biocrust	MRTIDQNVMNQLFEVTDEIPLDREGLQVPLVMEGEGKVARLKSGRIEITLPDTDDLGPFLASLPDRLRAL
Ga0370499_0064644_450_665	3300034194	Untreated Peat Soil	MRVIDQPIMNRLFEVTDEIPLSREALEVPLVMEGEGKVEKNRRGRIEITLPDTGDLEPFLAALPARLRALL
Ga0372943_0595461_3_176	3300034268	Soil	MRVIDQSVMNRLFEITDEIPLDREAIQVPLVMEGAGKIVKTKTGKIEITLPDADDLGP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071578

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences