Metagenome Family F071540

Basic Information
Family ID	F071540
Family Type	Metagenome
Number of Sequences	122
Average Sequence Length	69 residues
Representative Sequence	LENLLNEREQLLQARDKLIQNLMTELKDKKTQLARQEIEVWQKIERREAWKHRLSKFGIRLKD
Number of Associated Samples	115
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.82 %
% of genes from short scaffolds (< 2000 bps)	0.82 %
Associated GOLD sequencing projects	108
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (99.180 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.295 % of family members)
Environment Ontology (ENVO)	Unclassified (43.443 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (41.803 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 88.89% β-sheet: 0.00% Coil/Unstructured: 11.11%
Feature Viewer

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Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF02775	TPP_enzyme_C	30.33
PF13379	NMT1_2	11.48
PF03401	TctC	3.28
PF02776	TPP_enzyme_N	2.46
PF13229	Beta_helix	1.64
PF07690	MFS_1	0.82
PF07331	TctB	0.82
PF08309	LVIVD	0.82
PF05977	MFS_3	0.82
PF00437	T2SSE	0.82
PF00289	Biotin_carb_N	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	3.28
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.82
COG5276	Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain	Function unknown [S]	0.82

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.18 %
All Organisms	root	All Organisms	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.18 %
cellular organisms	root	All Organisms → cellular organisms	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.18 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.18 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.18 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.18 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.18 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.82 %

Scaffold	Taxonomy	Length	IMG/M Link
3300010403\|Ga0134123_11561829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	706	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.05%
Host-Associated	Host-Associated	22.95%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.46%
Aquatic	Environmental → Aquatic	24.59%
Plants	Host-Associated → Plants	22.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	52.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.57%
Sediment	Environmental → Aquatic → Sediment	11.48%
Freshwater	Environmental → Aquatic → Freshwater	7.38%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.38%
Marine	Environmental → Aquatic → Marine	5.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	11.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.84%
Loam	Environmental → Terrestrial → Soil → Loam	9.02%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.56%
Wetlands	Environmental → Aquatic → Marine → Wetlands	5.74%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.74%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.10%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.46%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.82%
Sand	Environmental → Terrestrial → Soil → Sand	0.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.23%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	11.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.84%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.56%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	5.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.74%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.92%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.10%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.46%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.46%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.64%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.82%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.82%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.30%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	9.84%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.38%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	5.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.10%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.10%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.10%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	3.28%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.28%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.28%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.46%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.46%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.46%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.46%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.64%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.64%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.64%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.64%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.64%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.82%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.82%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.82%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.82%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.82%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.82%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.82%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.82%

Visualization

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000041	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphere	Host-Associated	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000574	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300003992	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D1	Environmental	Open in IMG/M
3300003994	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2	Environmental	Open in IMG/M
3300004012	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqC_D2	Environmental	Open in IMG/M
3300004050	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLA_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300004808	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh	Environmental	Open in IMG/M
3300005204	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D2	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005904	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_404	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009597	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299	Environmental	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011400	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT133_2	Environmental	Open in IMG/M
3300011427	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT418_2	Environmental	Open in IMG/M
3300011429	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2	Environmental	Open in IMG/M
3300012041	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT754_2	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012226	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT400_2	Environmental	Open in IMG/M
3300012228	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT700_2	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012484	Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.old.190510	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014268	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D1	Environmental	Open in IMG/M
3300014304	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqA_D1	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014870	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT560_16_10D	Environmental	Open in IMG/M
3300014880	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_16_10D	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015257	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231_16_10D	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300025551	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027614	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027818	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033434	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300034155	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
ARcpr5oldR_0096801	3300000041	Arabidopsis Rhizosphere	EREQLLQARDKLIQNLMTELREKKTQLARQEIEVWQKIERREAWKHRLSKIGIRIKD*
F14TC_1013352451	3300000559	Soil	REQLLKTRDKLIQDWMTELKEKKTQLARQEIEVWQKIERREAWKHRLSKFGIRIKD*
JGI1357J11328_100950792	3300000574	Groundwater	ALDAEGGEADGLDSIRNEREQLLKARDKLINDLMSELKEKKTQLAKHEIEVWQGIERRGVWKHRLSKIGIRLKD*
JGI11643J12802_123150733	3300000890	Soil	DGRGVDTLLSEREELLKARDKLIQNLMTELKDKKTQLARQEIEVWKGIERREAWKHRLSKFGIRLKD*
Ga0055470_100952252	3300003992	Natural And Restored Wetlands	NGETSSDGNGRGLDTLLSEREELLKKRDNLIQNLMTELKEKKTQLARQEIQVWKDIERREAWKHRLAKIGIRLRD*
Ga0055470_101299561	3300003992	Natural And Restored Wetlands	VNGDGRGVDTLLSEREELLKARDKLIQNLMTELKDKKTQLARQEIEVWKGIERREAWKHRLSKFGIRLKD*
Ga0055435_100916471	3300003994	Natural And Restored Wetlands	LGEGDAADGDSETDGLDNIRTEREELVKARDKLINDLMSELKEKKSQLAKHEIEVWQGIERRGVWKHRLSKIGIRLKD*
Ga0055464_101652871	3300004012	Natural And Restored Wetlands	AVVPSDDDEDAAANGATNGMDTLLNEREALLKARDDLIQNLMAELKEKKTQLARHEIEVWQGIERRGAWKQRLSKVGIRLKD*
Ga0055491_102118261	3300004050	Natural And Restored Wetlands	LINEREELLKARDNLIQNLMAELKEKKTQLARHEIEVWQGIERRGVWKQRLSKVGIRLKD
Ga0062593_1001716001	3300004114	Soil	GSDDDGNERVNGDGRGVDTLLSEREELLKARDKLIQNLMTELKDKKTQLARQEIEVWKGIERREAWKHRLSKFGIRLKD*
Ga0062593_1009178032	3300004114	Soil	ASGEDEEATANGDTNGLDTLLNEREELLKARDNLIQNLMAELKEKKTQLARHEIEVWQGIERRGVWKQRLSKVGIRLKD*
Ga0062595_1010975571	3300004479	Soil	REESQIEDGRNGDAGLENLLNEREQLLQARDKLIQNLMTELKDKKTQLARQEIEVWQKIERREGWKRRLSKFGIRLKD*
Ga0062591_1010817241	3300004643	Soil	DDEDASAGDDTNGLDTLLNEREELLKARDNLIQNLMAELKEKKTQLARHEIEVWQGIERRGVWKQRLSKVGIRLKD*
Ga0062591_1014726552	3300004643	Soil	LDTLLNEREELLKARDNLIQNLMAELKEKKTQLARHEIEVWQGIERRGVWKQRLSKVGIRLKD*
Ga0062383_105981062	3300004778	Wetland Sediment	GGGASFLNGDNSGLDTLLGEREELLKARDHLIQNLMTELKEKKTQLARHEIEVWQGIERRDVWKHRLSKVGIRLKD*
Ga0062383_106168952	3300004778	Wetland Sediment	GANGNGDSGGLDTLLSEREELLKERDNLIQNLMTELKEKKTQLARHEIEVWQGIERRGVWKHRLSKVGIRLKD*
Ga0062381_101181851	3300004808	Wetland Sediment	AGGLDTLLSEREELLKARDNLIQNLMTELKEKKTQLARHEIEVWQGIERRGVWKNRLSKVGIRLKD*
Ga0068997_100326051	3300005204	Natural And Restored Wetlands	AAAEDGEADGLENIRTEREELLKARDKLINDLMGELKEKKSQLAKHEIEVWQGIERRGVWKHRLSKIGIRLKD*
Ga0065707_106635792	3300005295	Switchgrass Rhizosphere	DEGVGEGANGHSNGLESLISERDELVKARDKLINNLMTELKEKKTQLARHEIEVWQGIERRGVWKNRLSKIGIRLKD*
Ga0070690_1003338613	3300005330	Switchgrass Rhizosphere	ETLLGEREQLLQARDKLIQNLMTELKDKKTQLARQEIEVWQKIERREAWKHRLSKFGIRLKD*
Ga0070680_1000629461	3300005336	Corn Rhizosphere	HGLETLLGEREQLLRARDKLIQNLMTELKEKKTQLARQEIEVWQKIERREAWKHRLSKIGIRIRN*
Ga0070668_1000314261	3300005347	Switchgrass Rhizosphere	KTLMVMETAESHGEVNGEAHGLETLLSEREQLLQARDKLIQNLMTELREKKTQLARQEIEVWQKIERREAWKHRLSKIGIRIKD*
Ga0070674_1004448681	3300005356	Miscanthus Rhizosphere	ETAESHGEVNGEAHGLETLLSEREQLLQARDKLIQNLMTELREKKTQLARQEIEVWQKIERREAWKHRLSKIGIRIKD*
Ga0070694_1005555812	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	ANGHSNGLESLISERDELVKARDKLISNLMTELKEKKTQLARHEIEVWQGIERRGVWKNRLSKIGIRLKD*
Ga0070698_1016626371	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	REELLKARDKLIQNLMTELKEKKTQLARQEIEVWKGIERREAWKHRLSKFGIRLKD*
Ga0066697_104782372	3300005540	Soil	LNGEAHDLDTLVSEREQLLKARDKLIQDLMTELKEKKTQLARQEIDVWQKIERREAWKHRLSKIGIRIKD*
Ga0070695_1011137831	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	EESQTEDGRNGDGEGLENLLNEREQLLQARDKLIQNLMTELKDKKTQLARQEIEVWQKIERREAWKHRLSKFGIRLKD*
Ga0070665_1024884792	3300005548	Switchgrass Rhizosphere	MGTQDEGVGEGANGHSNGLESLISERDELVKARDKLINNLMTELKEKKTQLARHEIEVWQGIERRGVWKNRLSKIGIRLKD*
Ga0066704_104366141	3300005557	Soil	IIPISEKDSDEGLNGGARGLETLLNEREQLLQARDKLIDNLMVELKEKKTQLARQEIEVWQKIERREAWKHRLSKIGIRMKD*
Ga0068857_1008077511	3300005577	Corn Rhizosphere	LNEREQLLQARDKLIQNLMTELKDKKTQLARQEIEVWQKIERREAWKHRLSKFGIRLKD*
Ga0066905_1015026662	3300005713	Tropical Forest Soil	DNIRNEREELIKARDKLIGDLMSELKEKKSQLAKHEIEVWQGIERRGVWKHRLSKIGIRLKD*
Ga0068860_1013653522	3300005843	Switchgrass Rhizosphere	ARDKLIQELMVELKEKKSQLAKHEIEVWQGIERRDVWKHRLSKFGIRLKN*
Ga0068862_1019096592	3300005844	Switchgrass Rhizosphere	ELLKARDNLIQNLMAELKEKKTQLARHEIEVWQGIERRGVWKQRLSKVGIRLKD*
Ga0075280_100400493	3300005904	Rice Paddy Soil	LKKRDNLIQNLMSELKEKKTQLAQQEIQVWKDIERREAWKHRLAKIGIRLKD*
Ga0070716_1014990611	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	REQLLQARDKLIDNLMVELKEKKTQLARQEIEVWQKIERREAWKHRLSKIGIRMKD*
Ga0079037_1005128181	3300006224	Freshwater Wetlands	ARDHLIQNLMTELKEKKTQLARHEIEVWQGIERRGVWKQRLSKVGIRLKD*
Ga0075428_1024499081	3300006844	Populus Rhizosphere	SKADKALTIIPISEKDSDEGLNGGARGLETLLNEREQLLQARDKLIDNLMVELKEKKTQLARQEIEVWQKIERREAWKHRLSKIGIRMKD*
Ga0075434_1003135601	3300006871	Populus Rhizosphere	NKTLMVMETAESHDEKVNGEAQGLETLLGEREQLLQARDKLIQNLMTELREKKTQLARQEIEVWQKIERREAWKHRLSKIGIRIKD*
Ga0075429_1011940182	3300006880	Populus Rhizosphere	LENLLNEREQLLQARDKLIQNLMTELKDKKTQLARQEIEVWQKIERREAWKHRLSKFGIRLKD*
Ga0105107_107517951	3300009087	Freshwater Sediment	GPQLPAVVPTNDEDYAANGDAGGLDTLLSEREELLKARDNLIQNLMTELKEKKTQLARHEIEVWQGIERRGVWKHRLSKVGIRLKD*
Ga0105250_104083681	3300009092	Switchgrass Rhizosphere	MKERDQLLKSRDKLIQELMVELKEKKSQLAKHEIEVWQGIERRDVWKHRLSKFGIRLKN*
Ga0114129_119119041	3300009147	Populus Rhizosphere	HDLDTLVSEREQLLKARDKLIQDLMTELKEKKTQLARQEIEVWQKIERREAWKHRLSKIGIRIKD*
Ga0105243_106965452	3300009148	Miscanthus Rhizosphere	ETLLSEREQLLQARDKLIQNLMTELREKKTQLARQEIEVWQKIERREAWKHRLSKIGIRIKD*
Ga0075423_109068961	3300009162	Populus Rhizosphere	DTLVSEREQLLKARDKLIQDLMTELKEKKTQLARQEIEVWQKIERREAWKHRLSKIGIRIKD*
Ga0105242_101474091	3300009176	Miscanthus Rhizosphere	NEREQLLQARDKLIQNLMTELKDKKTQLARQEIAVWQKIERREAWKHRL*
Ga0105259_11380421	3300009597	Soil	PHLPAVVAFSDDEAAVNGDTNGLDTLLNEREELLKARDHLIQNLMTELKEKKTQLARHEIEVWQGIERRGVWKQRLSMVGIRLKD*
Ga0105259_11582071	3300009597	Soil	DELVKARDKLITNLMTELKEKKTQLARHEIEVWQGIERRGVWKNRLSKIGIRLKD*
Ga0105347_11771621	3300009609	Soil	KARDKLINDLMGELKEKKSQLAKHEIEVWQGIERRGVWKHRLSKIGIRLKD*
Ga0126377_101195884	3300010362	Tropical Forest Soil	LLKARDKLITDLMTELKEKKTQLAKQEIEEWKGIERREAWKHRLSKIGIRIKT*
Ga0105239_107842341	3300010375	Corn Rhizosphere	ARDKLIQNLMTELKDKKTQLARQEIEVWQKIERREAWKHRLSKFGIRLKD*
Ga0134124_127795352	3300010397	Terrestrial Soil	EQEESTEERLNGDAEGLENLLNEREQLLQARDKLIQNLMTELKDKKTQLARQEIEVWQKIERREAWKHRLSKFGIRLKD*
Ga0134122_129112641	3300010400	Terrestrial Soil	ELLKARDNLIQNLMVELKEKKTQLARHEIEVWQGIERRGAWKRRLSKVGIRLKD*
Ga0134123_115618291	3300010403	Terrestrial Soil	SDRALAVVEQEESTEERLNGDAEGLENLLNEREQLLQARDKLIQNLMTELKDKKTQLARQEIEVWQKIERREAWKHRLSKFGIRLKD*
Ga0137312_10465722	3300011400	Soil	GEDANGHSNGLESLISERDELVKARDKLITNLMTELKEKKTQLARHEIEVWQGIERRGVWKNRLSKIGIRLKD*
Ga0137448_12049852	3300011427	Soil	RQPAVLGDGAEAAENGESDGLESIRSEREALLKARDKLINDLMGELKEKKSQLAKHEIEVWQGIERRGVWKHRLSKIGIRLKD*
Ga0137455_11516562	3300011429	Soil	TDDEDYAANGDAGGLDTLLSEREELLKARDNLIQNLMTELKDKKTQLARHEIEVWQGIERRGVWKHRLSKVGIRLKD*
Ga0137430_12135752	3300012041	Soil	LLNEREELLKARDHLIQNLMAELKEKKTQLARHEIEVWQGIERRGVWKQRLSKVGIRLKD
Ga0137399_103837332	3300012203	Vadose Zone Soil	DEGLNGGARGLETLLNEREQLLQARDKLIDNLMVELKEKKTQLARQEIEVWQKIERREAWKHRLSKIGIRMKD*
Ga0137381_102217191	3300012207	Vadose Zone Soil	DKALTIIPISEKDSDEGLNGGARGLETLLNEREQLLQARDKLIDNLMVELKEKKTQLARQEIEVWQKIERREAWKHRLSKIGIRMKD*
Ga0137447_10212432	3300012226	Soil	EELLKTRDKLITDLMTELKDKKTQLARHEIEVWQGIERRGVWKHRLSKIGIRLKD*
Ga0137459_10278133	3300012228	Soil	DKLITNLMTELKEKKTQLARHEIEVWQGIERRGVWKNRLSKIGIRLKD*
Ga0137367_111363471	3300012353	Vadose Zone Soil	GEAHDLDTLVSEREQLLKARDKLIQDLMTELKEKKTQLARQEIDVWQKIERREAWKHRLSKIGIRIKD*
Ga0137366_101110761	3300012354	Vadose Zone Soil	QLLKARDKLIQDLMTELKEKKTQLARQEIDVWQKIERREAWKHRLSKIGIRIKD*
Ga0157333_10025981	3300012484	Soil	METAESHGEVNGEAHGLETLLSEREQLLQARDKLIQNLMTELREKKTQLARQEIEVWQKIERREAWKHRLSKIGIRIKD*
Ga0137373_109428662	3300012532	Vadose Zone Soil	NGEAHDLDTLVSEREQLLKARDKLIQDLMTELKEKKTQLARQEIDVWQKIERREAWKHRLSKIGIRIKD*
Ga0157308_103248361	3300012910	Soil	REELLKARDSLIQNLMAELKEKKTQLARHEIEVWQGIERRGVWKHRLSKVGIRLKD*
Ga0137407_106581112	3300012930	Vadose Zone Soil	TDKALTIIPISEKDSDEGLNGGARGLETLLNEREQLLQARDKLIDNLMVELKEKKTQLARQEIEVWQKIERREAWKHRLSKIGIRMKD*
Ga0137410_103533561	3300012944	Vadose Zone Soil	KTDKALTIIPISEKDSDEGLNGGARGLETLLNEREQLLQARDKLIDNLMVELKEKKTQLARQEIEVWQKIERREAWKHRLSKIGIRMKD*
Ga0164300_101216321	3300012951	Soil	DERLNGDADGLENLLNEREQLLQARDKLIQNLMTELKDKKTQLARQEIEVWQKIERREAWKHRLSKFGIRLKD*
Ga0164303_100997571	3300012957	Soil	REQLLQARDKLIQNLMTELKDKKTQLARQEIEVWQKIERREAWKHRLSKFGIRLKD*
Ga0157378_106310331	3300013297	Miscanthus Rhizosphere	HPVTRRELTGEANALDDLMKERDQLLKARDKLIQELMVELKEKKSQLAKHEIEVWQGIERRDVWKHRLSKFGIRLKN*
Ga0134081_102269612	3300014150	Grasslands Soil	GLNGEAHDLDTLVSEREQLLKARDKLIQDLMTELKEKKTQLARQEIDVWQKIERREAWKHRLSKIGIRIKD*
Ga0075309_11163801	3300014268	Natural And Restored Wetlands	KALIAMSAFEAQASERVNGEANGLETLLSEREQLLQARDKLIQNLMTELKEKKTQLARQEIEVWKNIERREAWKHRLSKFGIRLKD*
Ga0075340_10307972	3300014304	Natural And Restored Wetlands	VVIASGDEEEANANGDGNGLDTLINEREELLKARDNLIQNLMAELKEKKTQLARHEIEVWQGIERRGVWKQRLSKVGIRLKD*
Ga0157380_134687881	3300014326	Switchgrass Rhizosphere	MEERDQLLMARDKLIQELMVELKEKKSQLAKHEIEVWQGIERR
Ga0180080_10774281	3300014870	Soil	DGLDSIRTEREELLKARDKLINDLMSELKEKKSQLAKHEIEVWQGIERRGVWKHRLSKIGIRLKD*
Ga0180082_11192742	3300014880	Soil	DTLLNEREELLKARDHLIQNLMTELKEKKTQLARHEIEVWQGIERRGVWKQRLSKVGIRLKD*
Ga0137420_11281302	3300015054	Vadose Zone Soil	RGLETLLNEREQLLQARDKLIDNLMVELKEKKTQLARQEIEVWQKIERREAWKHRLSKIGIRMKD*
Ga0173483_107189951	3300015077	Soil	IPSDDDEDGVANGDTNGLDTLLNEREELLKARDNLIQNLMAELKEKKTQLARHEIEVWQGIERRGVWKHRLSKVGIRLKD*
Ga0137412_102752302	3300015242	Vadose Zone Soil	VMKTAESHSEKVNGEAPDLETLLGEREQLLQARDKLIQNLMTELREKKTQLARQEIEVWQKIERREAWKHRLSKIGIRIKD*
Ga0180067_10317221	3300015257	Soil	LSEREELLKARDNLIQNLMTELKDKKTQLARHEIEVWQGIERRGVWKHRLSKVGIRLKD*
Ga0134085_103484242	3300015359	Grasslands Soil	DQALVSAAGLNGEAHDLDTLVSEREQLLKARDKLIQDLMTELKEKKTQLARQEIDVWQKIERREAWKHRLSKIGIRIKD*
Ga0134083_102956821	3300017659	Grasslands Soil	DQALVSAAGLNGEAHDLDTLVSEREQLLKARDKLIQDLMTELKEKKTQLARQEIDVWQKIERREAWKHRLSKIGIRIKD
Ga0163161_106049632	3300017792	Switchgrass Rhizosphere	GDAEGLENLLNEREQLLQARDKLIHNLMTELKDKKTQLARQEIEVWQKIERREAWKHRLSKFGIRLKD
Ga0184639_102954441	3300018082	Groundwater Sediment	DGAAAAENGESDGLDNIRSEREALLKARDKLINDLMGELKENKTQLAKHEIEVWQGIERRGVWKHRLSKIGIRLKD
Ga0184639_104775531	3300018082	Groundwater Sediment	DGAAAAENGESDGLDNIRSEREALLKARDKLINDLMGELKEKKSQLAKHEIEVWQGIERRGVWKHRLSKIGIRLKD
Ga0190265_131946232	3300018422	Soil	VMPSSDQDGEPRVNGEGRGMDTLLSEREELLKARDKLINNLMTELKEKKTQLARQEIEVWKGIERREAWKHRLAKVGIRLKG
Ga0190272_127497302	3300018429	Soil	IDSLLSEREELLKARDHLINNLMTELKEKKTQLARHEIEVWQGIERRGLWKHRLSKIGIRLKD
Ga0190268_111846371	3300018466	Soil	EERGMDTLLSEREELLKARDKLINNLMTELKEKKTQLAHQEIEVWKGIERREAWKHRLAKVGIRLKD
Ga0173479_103871701	3300019362	Soil	SDKALMVMERKESLGDDANGHSNGLETLISERDELVKARDKLINNLMTELKEKKTQLARHEIEVWQGIERRGVWKNRLSKIGIRLKD
Ga0193755_12247951	3300020004	Soil	TAESHDEKVNGEAPGLETLLGEREQLLQARDKLIQNLMTELREKKTQLARQEIEVWQKIERREAWKHRLSKIGIRIKD
Ga0210380_101654883	3300021082	Groundwater Sediment	GANGHSNGLESLISERDELVKARDKLINNLMTELKEKKTQLARHEIEVWQGIERRGVWKNRLSKIGIRLKD
Ga0210131_10749801	3300025551	Natural And Restored Wetlands	ELVKARDKLINDLMSELKEKKSQLAKHEIEVWQGIERRGVWKHRLSKIGIRLKD
Ga0207707_102692084	3300025912	Corn Rhizosphere	LQEECSKNVGKDLMVVGADGDGHGLETLLGEREQLLQARDKLIQNLMTELKEKKTQLARQEIEVWQKIERREAWKHRLSKIGIRIRN
Ga0207693_102965683	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	SLNGDAEGLENLLNEREQLLQARDKLIQNLMTELKDKKTQLARQEIEVWQKIERREAWKHRLSKFGIRLKD
Ga0207652_101734961	3300025921	Corn Rhizosphere	LLNEREKLLQARDKLIQNLMTELKDKKTQLARQEIEVWQKIERREAWKHRLSKFGIRLKD
Ga0207686_117410702	3300025934	Miscanthus Rhizosphere	LISERDELVKARDKLINNLMTELKEKKTQLARHEIEVWQGIERRGVWKNRLSKIGIRLKD
Ga0207669_114524462	3300025937	Miscanthus Rhizosphere	ARDKLINNLMTELKEKKTQLARHEIEVWQGIERRGVWKNRLSKIGIRLKD
Ga0207651_102621331	3300025960	Switchgrass Rhizosphere	REQLLQARDKLIQNLMTELKDKKTQLARQEIEVWQKIERREAWKHRLSKFGIRLKD
Ga0207668_107444522	3300025972	Switchgrass Rhizosphere	KNNKTLMVMETAESHGEVNGEAHGLETLLSEREQLLQARDKLIQNLMTELREKKTQLARQEIEVWQKIERREAWKHRLSKIGIRIKD
Ga0207703_112107002	3300026035	Switchgrass Rhizosphere	ENLLNEREQLLQARDKLIQNLMTELKDKKTQLARQEIEVWQKIERREAWKHRLSKFGIRLKD
Ga0207678_100203718	3300026067	Corn Rhizosphere	REESQTEDGRNGDGEGLENLLNEREQLLQARDKLIQNLMTELKDKKTQLARQEIEVWQKIERREAWKHRLSKFGIRLKD
Ga0209970_10693241	3300027614	Arabidopsis Thaliana Rhizosphere	SDETVNGDGRGVDTLLSEREELLKARDKLIQNLMTELKDKKTQLARQEIEVWKGIERREAWKHRLSKFGIRLKD
Ga0209971_10007721	3300027682	Arabidopsis Thaliana Rhizosphere	NGDGRGVDTLLSEREELLKARDKLIQNLMTELKDKKTQLARQEIEVWKGIERREAWKHRLSKFGIRLKD
Ga0209464_100877362	3300027778	Wetland Sediment	IASADDDDEARASGDAGGLDTLLHEREELLKARDNLIQNLMTELKEKKTQLARHEIEVWQGIERRGVWKNRLSKVGIRLKD
Ga0209074_104160542	3300027787	Agricultural Soil	EREQLLQARDKLIQNLMTELKDKKTQLARQEIEVWQKIERREAWKHRLSKFGIRLKD
Ga0209706_104827192	3300027818	Freshwater Sediment	RDNLIQNLMTELKEKKTQLARHEIEVWQGIERRGVWKHRLSKVGIRLKD
Ga0268264_120470412	3300028381	Switchgrass Rhizosphere	DLMKERDQLLKARDKLIQELMVELKEKKSQLAKHEIEVWQGIERRDVWKHRLSKFGIRLK
Ga0307281_101807632	3300028803	Soil	PAVLGDGAEAAENGESDGLDNIRSEREALLKARDKLINDLMGELKEKKSQLAKHEIEVWQGIERRGVWKHRLSKIGIRLKD
Ga0307302_102899472	3300028814	Soil	GMNGESHGLDTLLNERETLLKARDKLIQDLMSELKEKKTQLARQEIDVWQKIERRDAWKHRLSKIGIRIKN
Ga0302046_100451781	3300030620	Soil	ALIAMGAFEPKASERVNGEANGLETLLSEREQLLQARDKLIQNLMTELKEKKTQLARQEIEVWKNIERREAWKHRLSKFGIRLKD
(restricted) Ga0255312_10686623	3300031248	Sandy Soil	TLLSEREELLKARDALIQNLMTELKEKKTQLARQEIEVWKGIERREAWKHRLQKIGIRLK
Ga0310886_105691791	3300031562	Soil	NEREELLKARDNLIQNLMAELKEKKTQLARHEIEVWQGIERRGVWKHRLSKVGIRLKD
Ga0310886_107241742	3300031562	Soil	ETLLSEREQLLQARDKLIQNLMTELREKKTQLARQEIEVWQKIERREAWKHRLSKIGIRIKD
Ga0310813_105509781	3300031716	Soil	LNEREQLLQARDKLIQNLMTELKDKKTQLARQEIEVWQKIERREAWKHRLSKFGIRLKD
Ga0310893_102161741	3300031892	Soil	GPHLPVVIPSDDDEDGVASGDTNGLDTLLNEREELLKARDNLIQNLMAELKEKKTQLARHEIEVWQGIERRGVWKHRLSKVGIRLKD
Ga0306926_102882264	3300031954	Soil	GVNGNADGLESLLNEREQLLQARDKLIQNLMTELKEKKTQLARQEIEVWQKVERREAWKHRLSKFGIRLKD
Ga0306920_1005070911	3300032261	Soil	QEEDQADDGLNGNADGLESLLNEREQLLQARDKLIQNLMTELKEKKTQLARQEIEVWQKVERREAWKHRLSKFGIRLKD
Ga0316603_107805381	3300033413	Soil	SDDEAAVNGDTNGLDTLLNEREELLKARDHLIQNLMTELKEKKTQLARHEIEVWQGIERRGVWKQRLSKVGIRLKD
Ga0316613_105084132	3300033434	Soil	LSSGDDEDAVATGDTNGLDMLLSEREELLKARDNLIQNLMAELKEKKTQLARHEIEVWQGIERRGVWKNRLSKVGIRLKD
Ga0310811_104775271	3300033475	Soil	LLGEREQLLQARDKLIQNLMTELKDKKTQLARQEIEVWQKIERREAWKHRLSKIGIRLRD
Ga0370498_177849_363_521	3300034155	Untreated Peat Soil	LKVRDKLIQELMVELKEKKSQLARHEIEVWQGIERRGVWKHRLSKFGIRLKD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F071540

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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