Metagenome / Metatranscriptome Family F071447

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071447
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	38 residues
Representative Sequence	EADLKRRREKFFRIGRIERGDTGKARLVYSGALNL
Number of Associated Samples	111
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	96.72 %
% of genes from short scaffolds (< 2000 bps)	91.80 %
Associated GOLD sequencing projects	105
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (91.803 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (23.770 % of family members)
Environment Ontology (ENVO)	Unclassified (27.869 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.639 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.46% β-sheet: 12.70% Coil/Unstructured: 69.84%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.24
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.24
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF11731	Cdd1	13.93
PF01784	NIF3	7.38
PF00551	Formyl_trans_N	7.38
PF03551	PadR	5.74
PF13302	Acetyltransf_3	5.74
PF14602	Hexapep_2	4.10
PF00579	tRNA-synt_1b	2.46
PF01145	Band_7	2.46
PF00586	AIRS	1.64
PF11949	DUF3466	0.82
PF02769	AIRS_C	0.82
PF01266	DAO	0.82
PF07282	OrfB_Zn_ribbon	0.82
PF02574	S-methyl_trans	0.82
PF12681	Glyoxalase_2	0.82
PF14534	DUF4440	0.82
PF02517	Rce1-like	0.82
PF12706	Lactamase_B_2	0.82
PF00230	MIP	0.82
PF07238	PilZ	0.82
PF04199	Cyclase	0.82
PF00106	adh_short	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG0327	Putative GTP cyclohydrolase 1 type 2, NIF3 family	Coenzyme transport and metabolism [H]	7.38
COG3323	PII-like insert in the uncharacterized protein YqfO, YbgI/NIF3 family	Function unknown [S]	7.38
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	5.74
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	5.74
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	5.74
COG0162	Tyrosyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.46
COG0180	Tryptophanyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.46
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	0.82
COG0646	Methionine synthase I (cobalamin-dependent), methyltransferase domain	Amino acid transport and metabolism [E]	0.82
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.82
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	0.82
COG2040	Homocysteine/selenocysteine methylase (S-methylmethionine-dependent)	Amino acid transport and metabolism [E]	0.82
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.80 %
Unclassified	root	N/A	8.20 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.80 %
Unclassified	root	N/A	8.20 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.80 %
Unclassified	root	N/A	8.20 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	53.28 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	13.11 %
Unclassified	root	N/A	8.20 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	9.84 %
Unclassified	root	N/A	8.20 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	7.38 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.92 %

Name	Rank	Taxonomy	Distribution
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	9.84 %
Unclassified	root	N/A	8.20 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.38 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	3.28 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.64 %

Name	Rank	Taxonomy	Distribution
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	9.84 %
Unclassified	root	N/A	8.20 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.38 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	3.28 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.64 %

Name	Rank	Taxonomy	Distribution
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	9.84 %
Unclassified	root	N/A	8.20 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.38 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	3.28 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	1.64 %

Name	Rank	Taxonomy	Distribution
unclassified Pseudomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas	9.84 %
Unclassified	root	N/A	8.20 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.38 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	3.28 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1.64 %

Name	Rank	Taxonomy	Distribution
Pseudomonas sp. GW460-12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. GW460-12	9.84 %
Unclassified	root	N/A	8.20 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.38 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	3.28 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1.64 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_11521582	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
3300001089\|JGI12683J13190_1023077	Not Available	544	Open in IMG/M
3300001545\|JGI12630J15595_10045588	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300004479\|Ga0062595_102035042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. GW460-12	556	Open in IMG/M
3300004635\|Ga0062388_101716038	All Organisms → cellular organisms → Bacteria → Acidobacteria	642	Open in IMG/M
3300005553\|Ga0066695_10387286	All Organisms → cellular organisms → Bacteria → Acidobacteria	870	Open in IMG/M
3300005586\|Ga0066691_10397215	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300005598\|Ga0066706_11133285	All Organisms → cellular organisms → Bacteria → Acidobacteria	596	Open in IMG/M
3300005764\|Ga0066903_102524134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. GW460-12	995	Open in IMG/M
3300006052\|Ga0075029_101013829	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300006059\|Ga0075017_100286355	All Organisms → cellular organisms → Bacteria	1214	Open in IMG/M
3300006176\|Ga0070765_100281526	All Organisms → cellular organisms → Bacteria → Acidobacteria	1533	Open in IMG/M
3300006755\|Ga0079222_10451645	All Organisms → cellular organisms → Bacteria	919	Open in IMG/M
3300006794\|Ga0066658_10908822	All Organisms → cellular organisms → Bacteria → Acidobacteria	507	Open in IMG/M
3300006804\|Ga0079221_11499125	All Organisms → cellular organisms → Bacteria → Acidobacteria	541	Open in IMG/M
3300006854\|Ga0075425_100841196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. GW460-12	1051	Open in IMG/M
3300006872\|Ga0101947_1104350	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300006954\|Ga0079219_10645466	All Organisms → cellular organisms → Bacteria → Acidobacteria	788	Open in IMG/M
3300007258\|Ga0099793_10051952	All Organisms → cellular organisms → Bacteria	1810	Open in IMG/M
3300009012\|Ga0066710_102704596	All Organisms → cellular organisms → Bacteria → Acidobacteria	707	Open in IMG/M
3300009038\|Ga0099829_11164729	All Organisms → cellular organisms → Bacteria → Acidobacteria	639	Open in IMG/M
3300009088\|Ga0099830_11243664	All Organisms → cellular organisms → Bacteria → Acidobacteria	618	Open in IMG/M
3300009089\|Ga0099828_10491256	All Organisms → cellular organisms → Bacteria	1107	Open in IMG/M
3300009162\|Ga0075423_11668654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. GW460-12	686	Open in IMG/M
3300009521\|Ga0116222_1149070	All Organisms → cellular organisms → Bacteria → Acidobacteria	1007	Open in IMG/M
3300010043\|Ga0126380_10148547	All Organisms → cellular organisms → Bacteria → Acidobacteria	1497	Open in IMG/M
3300010321\|Ga0134067_10001611	All Organisms → cellular organisms → Bacteria → Acidobacteria	5252	Open in IMG/M
3300010321\|Ga0134067_10066353	All Organisms → cellular organisms → Bacteria → Acidobacteria	1187	Open in IMG/M
3300010339\|Ga0074046_10817187	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300010358\|Ga0126370_10180383	All Organisms → cellular organisms → Bacteria	1574	Open in IMG/M
3300010360\|Ga0126372_10281230	All Organisms → cellular organisms → Bacteria → Acidobacteria	1449	Open in IMG/M
3300010361\|Ga0126378_11933823	All Organisms → cellular organisms → Bacteria → Acidobacteria	672	Open in IMG/M
3300010366\|Ga0126379_12616560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. GW460-12	602	Open in IMG/M
3300010861\|Ga0126349_1193951	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300011270\|Ga0137391_11193366	All Organisms → cellular organisms → Bacteria → Acidobacteria	609	Open in IMG/M
3300011271\|Ga0137393_10258389	All Organisms → cellular organisms → Bacteria → Acidobacteria	1479	Open in IMG/M
3300012096\|Ga0137389_11105469	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300012189\|Ga0137388_10550602	All Organisms → cellular organisms → Bacteria → Proteobacteria	1072	Open in IMG/M
3300012198\|Ga0137364_11249773	All Organisms → cellular organisms → Bacteria → Acidobacteria	555	Open in IMG/M
3300012203\|Ga0137399_10337025	All Organisms → cellular organisms → Bacteria → Acidobacteria	1251	Open in IMG/M
3300012203\|Ga0137399_10847014	All Organisms → cellular organisms → Bacteria → Acidobacteria	770	Open in IMG/M
3300012207\|Ga0137381_11431686	All Organisms → cellular organisms → Bacteria → Acidobacteria	583	Open in IMG/M
3300012361\|Ga0137360_10132238	All Organisms → cellular organisms → Bacteria	1955	Open in IMG/M
3300012361\|Ga0137360_10515392	All Organisms → cellular organisms → Bacteria → Acidobacteria	1019	Open in IMG/M
3300012363\|Ga0137390_10991300	All Organisms → cellular organisms → Bacteria → Acidobacteria	792	Open in IMG/M
3300012683\|Ga0137398_10716880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. GW460-12	696	Open in IMG/M
3300012685\|Ga0137397_10759698	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	719	Open in IMG/M
3300012918\|Ga0137396_10619004	All Organisms → cellular organisms → Bacteria → Acidobacteria	801	Open in IMG/M
3300012918\|Ga0137396_10656782	All Organisms → cellular organisms → Bacteria → Acidobacteria	774	Open in IMG/M
3300012925\|Ga0137419_11764532	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300012925\|Ga0137419_11891045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. GW460-12	512	Open in IMG/M
3300012930\|Ga0137407_12349777	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300012957\|Ga0164303_10701101	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300013296\|Ga0157374_10115528	Not Available	2585	Open in IMG/M
3300014152\|Ga0181533_1027296	All Organisms → cellular organisms → Bacteria → Acidobacteria	3418	Open in IMG/M
3300015054\|Ga0137420_1430133	Not Available	2399	Open in IMG/M
3300015264\|Ga0137403_10263806	All Organisms → cellular organisms → Bacteria → Acidobacteria	1629	Open in IMG/M
3300017823\|Ga0187818_10504069	All Organisms → cellular organisms → Bacteria → Acidobacteria	543	Open in IMG/M
3300017943\|Ga0187819_10802149	All Organisms → cellular organisms → Bacteria → Acidobacteria	529	Open in IMG/M
3300017947\|Ga0187785_10541916	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	587	Open in IMG/M
3300017973\|Ga0187780_10223467	Not Available	1316	Open in IMG/M
3300017975\|Ga0187782_11248002	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300017995\|Ga0187816_10082485	All Organisms → cellular organisms → Bacteria	1369	Open in IMG/M
3300018012\|Ga0187810_10102084	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300019890\|Ga0193728_1017601	All Organisms → cellular organisms → Bacteria	3588	Open in IMG/M
3300020579\|Ga0210407_10014573	All Organisms → cellular organisms → Bacteria → Acidobacteria	5842	Open in IMG/M
3300020581\|Ga0210399_10617527	All Organisms → cellular organisms → Bacteria → Acidobacteria	896	Open in IMG/M
3300021046\|Ga0215015_10168871	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300021088\|Ga0210404_10309008	All Organisms → cellular organisms → Bacteria → Acidobacteria	871	Open in IMG/M
3300021168\|Ga0210406_10388877	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1119	Open in IMG/M
3300021168\|Ga0210406_10425180	All Organisms → cellular organisms → Bacteria	1061	Open in IMG/M
3300021170\|Ga0210400_10381806	All Organisms → cellular organisms → Bacteria → Acidobacteria	1161	Open in IMG/M
3300021170\|Ga0210400_10825252	All Organisms → cellular organisms → Bacteria → Acidobacteria	759	Open in IMG/M
3300021420\|Ga0210394_10256051	All Organisms → cellular organisms → Bacteria → Acidobacteria	1532	Open in IMG/M
3300021432\|Ga0210384_11177694	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300021433\|Ga0210391_10849447	All Organisms → cellular organisms → Bacteria → Acidobacteria	713	Open in IMG/M
3300021559\|Ga0210409_10893918	All Organisms → cellular organisms → Bacteria → Acidobacteria	762	Open in IMG/M
3300021560\|Ga0126371_12664856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. GW460-12	606	Open in IMG/M
3300024251\|Ga0247679_1008229	All Organisms → cellular organisms → Bacteria → Proteobacteria	1794	Open in IMG/M
3300024330\|Ga0137417_1442118	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2317	Open in IMG/M
3300025625\|Ga0208219_1126014	Not Available	569	Open in IMG/M
3300025910\|Ga0207684_10716408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. GW460-12	850	Open in IMG/M
3300025910\|Ga0207684_11489181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. GW460-12	551	Open in IMG/M
3300026474\|Ga0247846_1066356	All Organisms → cellular organisms → Bacteria → Acidobacteria	638	Open in IMG/M
3300026529\|Ga0209806_1327451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. GW460-12	514	Open in IMG/M
3300026557\|Ga0179587_10048646	All Organisms → cellular organisms → Bacteria → Acidobacteria	2430	Open in IMG/M
3300026557\|Ga0179587_10383581	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300026800\|Ga0207742_118849	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300026872\|Ga0207785_1022551	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	550	Open in IMG/M
3300027330\|Ga0207777_1041289	Not Available	829	Open in IMG/M
3300027535\|Ga0209734_1094954	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300027635\|Ga0209625_1110951	Not Available	615	Open in IMG/M
3300027643\|Ga0209076_1080932	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300027674\|Ga0209118_1200012	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300027678\|Ga0209011_1138301	All Organisms → cellular organisms → Bacteria → Acidobacteria	689	Open in IMG/M
3300027765\|Ga0209073_10220312	All Organisms → cellular organisms → Bacteria → Acidobacteria	728	Open in IMG/M
3300027795\|Ga0209139_10077018	All Organisms → cellular organisms → Bacteria	1170	Open in IMG/M
3300027812\|Ga0209656_10233468	All Organisms → cellular organisms → Bacteria → Proteobacteria	877	Open in IMG/M
3300027862\|Ga0209701_10147990	All Organisms → cellular organisms → Bacteria → Acidobacteria	1435	Open in IMG/M
3300028047\|Ga0209526_10290867	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300028906\|Ga0308309_11673243	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300030707\|Ga0310038_10175348	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300031545\|Ga0318541_10651443	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	589	Open in IMG/M
3300031719\|Ga0306917_10692100	Not Available	801	Open in IMG/M
3300031744\|Ga0306918_10550011	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300031754\|Ga0307475_11011448	Not Available	653	Open in IMG/M
3300031770\|Ga0318521_10990391	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	515	Open in IMG/M
3300031941\|Ga0310912_10055752	All Organisms → cellular organisms → Bacteria → Acidobacteria	2794	Open in IMG/M
3300031941\|Ga0310912_11014387	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	636	Open in IMG/M
3300031945\|Ga0310913_10237727	All Organisms → cellular organisms → Bacteria	1278	Open in IMG/M
3300031946\|Ga0310910_10576327	All Organisms → cellular organisms → Bacteria → Proteobacteria	892	Open in IMG/M
3300032001\|Ga0306922_11533105	All Organisms → cellular organisms → Bacteria → Acidobacteria	665	Open in IMG/M
3300032035\|Ga0310911_10489147	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300032051\|Ga0318532_10309298	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	561	Open in IMG/M
3300032091\|Ga0318577_10644229	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	503	Open in IMG/M
3300032174\|Ga0307470_10302759	All Organisms → cellular organisms → Bacteria	1085	Open in IMG/M
3300032180\|Ga0307471_103912217	All Organisms → cellular organisms → Bacteria → Acidobacteria	526	Open in IMG/M
3300032261\|Ga0306920_100117293	All Organisms → cellular organisms → Bacteria → Acidobacteria	3952	Open in IMG/M
3300032954\|Ga0335083_11346437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. GW460-12	547	Open in IMG/M
3300033158\|Ga0335077_11685450	All Organisms → cellular organisms → Bacteria → Acidobacteria	600	Open in IMG/M
3300033158\|Ga0335077_11968674	Not Available	544	Open in IMG/M
3300033402\|Ga0326728_10890887	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.72%
Host-Associated	Host-Associated	2.46%
Engineered	Engineered	0.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.52%
Aquatic	Environmental → Aquatic	8.20%
Plants	Host-Associated → Plants	2.46%
Built Environment	Engineered → Built Environment	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.89%
Freshwater	Environmental → Aquatic → Freshwater	6.56%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.46%
Sediment	Environmental → Aquatic → Sediment	1.64%
Peat	Environmental → Terrestrial → Peat	1.64%
Unclassified	Engineered → Built Environment → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.85%
Loam	Environmental → Terrestrial → Soil → Loam	12.30%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.56%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.64%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.64%
Unclassified	Engineered → Built Environment → Unclassified → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.25%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.66%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.74%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.74%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.10%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.28%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.64%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.64%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.82%
Unclassified	Engineered → Built Environment → Unclassified → Unclassified → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	23.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.21%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.28%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.28%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.28%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.46%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.46%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.46%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.46%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.64%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.64%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.64%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.64%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.64%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.64%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.82%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.82%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.82%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.82%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.82%
Drinking Water Pipes	Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Drinking Water Pipes	0.82%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001089	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006872	Biofilm microbial communities from drinking water pipes in Singapore	Engineered	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010861	Boreal forest soil eukaryotic communities from Alaska, USA - C4-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014152	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaG	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024251	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK20	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025625	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026474	Peat soil microbial communities from Stordalen Mire, Sweden - P.F.S.T0	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026800	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 43 (SPAdes)	Environmental	Open in IMG/M
3300026872	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 74 (SPAdes)	Environmental	Open in IMG/M
3300027330	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35 (SPAdes)	Environmental	Open in IMG/M
3300027535	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_115215821	3300000789	Soil	KEAEADLKRRREKFYRIGRIEKGDTGKARVVYSGSLNL*
JGI12683J13190_10230771	3300001089	Forest Soil	EADLKKRREKFFRIGRIERSDSGKARVAYSGALNL*
JGI12630J15595_100455881	3300001545	Forest Soil	EADLKRRREKFFRIGRIERGDTGKARLVYSGALNL*
Ga0062595_1020350422	3300004479	Soil	VKKVEADLKRRREKFFQIGRIARGDTAKARVVYSGALNLG*
Ga0062388_1017160382	3300004635	Bog Forest Soil	VKSVEADLKKRREKFFRIGRIERSDSGKARVAYSGALNLG*
Ga0066695_103872861	3300005553	Soil	DLKKRREKFFRIGRIERGESGKARIFYSGTLQLQ*
Ga0066691_103972151	3300005586	Soil	ADLKKRREKSFLIGRIERGESGKARVSYAGSLNLA*
Ga0066706_111332851	3300005598	Soil	VKSVEADLKKHREKFFRIGRIERSESGKARVSYSGSLNL*
Ga0066903_1025241343	3300005764	Tropical Forest Soil	ADLKRRREKFFQIGRIERGDTAKARVVYSGALNLS*
Ga0075029_1010138292	3300006052	Watersheds	ATHVKEAEADLKRRREKFFRIGRIERGDTGKARLIYSGALNL*
Ga0075017_1002863551	3300006059	Watersheds	VEADLKKRREKFFLIGRIERSESGKARVTYSGSLQMQ*
Ga0070765_1002815263	3300006176	Soil	DLKKRREKFFRIGRIERGESGKPRVTYSGSLSLS*
Ga0079222_104516453	3300006755	Agricultural Soil	ADLKKRREKFFRIGRIERAESGKSRVSFTGSLNL*
Ga0066658_109088222	3300006794	Soil	KNVKSVEADLKKHREKFFRVGRIERSESGKARIAYSGSLQMP*
Ga0079221_114991251	3300006804	Agricultural Soil	DLKKHREKFFRIGRIERGESGKARVSYSGSLNLG*
Ga0075425_1008411961	3300006854	Populus Rhizosphere	KKVEADLKRRREKFFQIGRIERGDTAKARVVYSGALSL*
Ga0101947_11043502	3300006872	Drinking Water Pipes	LKRRREKFYRIGRIEPLASGSNKPRVAFSGSLQL*
Ga0079219_106454662	3300006954	Agricultural Soil	VEVDLKRRREKFFRIGRIDRGDSGKARVKFSGSLGL*
Ga0099793_100519523	3300007258	Vadose Zone Soil	VEADLKKRREKFFLIGRIGRGESGKARVSYAGSLNLA*
Ga0066710_1027045961	3300009012	Grasslands Soil	PPAYIKQVEADLKRRREKFYRIGRIERGEPGKCRIAYSGALNL
Ga0099829_111647291	3300009038	Vadose Zone Soil	VEADLKKRREKFFRIGRIERSESGKARVAYTGSLHL*
Ga0099830_112436641	3300009088	Vadose Zone Soil	KVEAELKHRREKFFRIGRVERAAPNKNRVVYSGSLNL*
Ga0099828_104912562	3300009089	Vadose Zone Soil	VRSVEADLKKRREKFFLIGRIERGESGKARVSYSGSLNLA*
Ga0075423_116686542	3300009162	Populus Rhizosphere	QAHVQSVEADLKRRREKFHRIGRIEKGDSGKAKVKFSASLAL*
Ga0116222_11490703	3300009521	Peatlands Soil	KEVEADLKRRREKFYRIGRIERGDTGKARLVYSGALNL*
Ga0126380_101485474	3300010043	Tropical Forest Soil	EFVKDAEADLKRRREKFFRIGRIERGDTGKARLVYSGALNL*
Ga0134067_100016117	3300010321	Grasslands Soil	AHLKKRREKFFRIGRIDRSESGKARVAYSGSLQMQ*
Ga0134067_100663531	3300010321	Grasslands Soil	VKSVEADLKKHREKFFRIGRMERSESGKARVSYSGSLNL*
Ga0074046_108171872	3300010339	Bog Forest Soil	EADLKRRREKFFRIGRIERADSGKPRVAHSGSLSL*
Ga0126370_101803834	3300010358	Tropical Forest Soil	KEAEADLKRRREKFFRIGRSERGDTGKARLVYSGARNL*
Ga0126372_102812303	3300010360	Tropical Forest Soil	FVKSVEADLKKRREKFYRIGRIERAESGKPRVSFSASLNL*
Ga0126378_119338232	3300010361	Tropical Forest Soil	EADLKKRREKFYRIGRIERAESGKSRVSFSASLNL*
Ga0126379_126165601	3300010366	Tropical Forest Soil	AKVQSVEADLKRRREKFFRIGRIERGDSGKARVIYTGALHL*
Ga0126349_11939511	3300010861	Boreal Forest Soil	EADLKKRREKFFRIGRIERSESGKARVTYSGSLNL*
Ga0137391_111933661	3300011270	Vadose Zone Soil	EADLKKRREKFFRIGRIERGESGKARVSYSGALQMQ*
Ga0137393_102583891	3300011271	Vadose Zone Soil	NVRSVEADLKKRREKFFLIGRIERGESGKARVTYCGSLNL*
Ga0137389_111054691	3300012096	Vadose Zone Soil	PVEADLKRRREKFFRIGRIERGDSGKARVKFSGSLNL*
Ga0137388_105506023	3300012189	Vadose Zone Soil	PADHVKVAEADLKRRREKFFRIGRIERGDTGKARLIYSGALNL*
Ga0137364_112497731	3300012198	Vadose Zone Soil	KNVKSVEAHLKKRREKFFRIGRIDRSESGKARVAYSGSLQMQ*
Ga0137399_103370251	3300012203	Vadose Zone Soil	KSVEADLKKHREKFFRIGRIERGESGKARVSYSGSLQM*
Ga0137399_108470141	3300012203	Vadose Zone Soil	RVKSVEADLKKHREKFFRIGRIERGESGKARVSYSGSLQM*
Ga0137381_114316862	3300012207	Vadose Zone Soil	KSVEADLKKRREKFFRIGRIERAESGKSRVSFTGSLNL*
Ga0137360_101322381	3300012361	Vadose Zone Soil	DLKRRREKFFRIGRIERGDSGKARVKFSGSLGLQ*
Ga0137360_105153923	3300012361	Vadose Zone Soil	ADLKKRREKFFRIGRIERSESGKARVAYTGSLQMK*
Ga0137390_109913002	3300012363	Vadose Zone Soil	VKPVEADLKRRREKFFRIGRIERGDSGKARVKFSGSLNL*
Ga0137398_107168801	3300012683	Vadose Zone Soil	VETDLKRRREKFFQIGRIERGDTAKARVVYSGALSL*
Ga0137397_107596982	3300012685	Vadose Zone Soil	ADLKRRREKFFQIGRIERGDTAKARVVYSGALSL*
Ga0137396_106190043	3300012918	Vadose Zone Soil	VEADLKKRREKFFRIGRIERSESGKARVAYSGSLSL*
Ga0137396_106567821	3300012918	Vadose Zone Soil	AVEADLKKRREKFFRIGRIERSESGKARVAYSGSLRI*
Ga0137419_117645321	3300012925	Vadose Zone Soil	ADLKRRREKFFRIGRIERGDSGKARIKFSGSLGL*
Ga0137419_118910451	3300012925	Vadose Zone Soil	VEADLKRRREKFFNIGRIERGDTAKARVAYSGALNL*
Ga0137407_123497772	3300012930	Vadose Zone Soil	VEADLKKRREKFFLIGRIERSESGKARVTYSGSLNL*
Ga0164303_107011011	3300012957	Soil	ADLKRRREKFFNVGRIERGDTAKARVAYSGALNL*
Ga0157374_101155283	3300013296	Miscanthus Rhizosphere	QAHVQSVEADLKRRREKFHRIGRIETGESGKAKVKFSASLAV*
Ga0181533_10272963	3300014152	Bog	EADLKRRREKFFRIGRIERGDTGKARLVYSGALSL*
Ga0137420_14301332	3300015054	Vadose Zone Soil	MCVAVEADLKKRREKFFRIGRMERSESGKAASPTAVSLHL*
Ga0137403_102638061	3300015264	Vadose Zone Soil	KSVEADLKKHREKFFRIGRIERSESGKARVAYSGSLNL*
Ga0187818_105040692	3300017823	Freshwater Sediment	EADLKRRREKYYRIGRIERGDTGKARLVYSGALSL
Ga0187819_108021492	3300017943	Freshwater Sediment	AEADLKRRREKFFRIGRIERGDTGKARLVYSGALNL
Ga0187785_105419162	3300017947	Tropical Peatland	EAEADLKRRREKFFKIGRIERGDTGKARLIYSGALSL
Ga0187780_102234674	3300017973	Tropical Peatland	EADLKRRREKFFRIGRIERGDTGKARMIYSGALNLA
Ga0187782_112480021	3300017975	Tropical Peatland	IQFVESDLKRRREKFFRIGRIERGDSGKACIKFTGSLNL
Ga0187816_100824854	3300017995	Freshwater Sediment	VKNAEADLKRRREKFFRIGRIERGDTGKARLIYSGALNL
Ga0187810_101020841	3300018012	Freshwater Sediment	EHVKNAEADLKRRREKFFRIGRIERGDTGKARLVYSGALNL
Ga0193728_10176015	3300019890	Soil	PAQVKYVEADLKKRREKFYRIGRIERSDSGKARLAYSGTLSL
Ga0210407_100145731	3300020579	Soil	SNVKAVEIDLKKRREKFFRIGRIERGDPGKARVVYSGSLNL
Ga0210399_106175271	3300020581	Soil	SVEADLKRRREKFFRIGRIERADSDKARVSYTGTLNL
Ga0215015_101688712	3300021046	Soil	MCIRDSVEADLKRRREKFFRIGRVERADSGKARVSYTGALNL
Ga0210404_103090081	3300021088	Soil	SVEADLKKHREKFFRIGRIERGESGKARVSYSGSLQM
Ga0210406_103888771	3300021168	Soil	VEADLKRRREKFFRIGRIERGDSGKARVTYTGSLHL
Ga0210406_104251802	3300021168	Soil	KLVEADLKRRREKFFRIGRIARGDSGKARVKFSGTLGL
Ga0210400_103818061	3300021170	Soil	EADLKRRREKFFRIGRIERGDSGKARVTYTGSLHL
Ga0210400_108252522	3300021170	Soil	VEADLKRRREKFFRIGRIERSDSGKARVKFSGSLRL
Ga0210394_102560512	3300021420	Soil	TVEAALKKHREKFFRIGRIERSESGKARVSYSGSLNL
Ga0210384_111776943	3300021432	Soil	VKEAEADLKRRREKFFRIGRIERGDTGKARLVYSGALNL
Ga0210391_108494472	3300021433	Soil	KEAEADLKRRREKFFRIGRIERGDTGKARLIYSGALNL
Ga0210409_108939181	3300021559	Soil	VETDLKRRREKFVRIGRIERGDSGKSKVKFSGSLGL
Ga0126371_126648561	3300021560	Tropical Forest Soil	VEADLKRRREKFFQIGRIERGDTAKARVVYSGALNLS
Ga0247679_10082291	3300024251	Soil	VEADLKRRREKFFRIGRIERSDSGKARVAHSGSLNL
Ga0137417_14421182	3300024330	Vadose Zone Soil	VKSVEADLKKHREKFFRIGRIERGESGKARVSYSGSLQM
Ga0208219_11260141	3300025625	Arctic Peat Soil	PAQVRFVEGDLKKRREKFFRIGRIERSDSGKARLAYSGALGL
Ga0207684_107164081	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	EADLKRRREKFFQIGRIERGDTAKARVVYSGALNL
Ga0207684_114891812	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	SAYVKKVEADLKRRREKFFQIGRVERGDTAKARVVYSGALSF
Ga0247846_10663562	3300026474	Soil	AHVKEVEADLKRRREKFFRIGRIERGDTGKARLVYSGALSL
Ga0209806_13274511	3300026529	Soil	YIKQVEADLKRRREKFYRIGRIERGEPGKCRIAYSGALNL
Ga0179587_100486461	3300026557	Vadose Zone Soil	KRVKSVEADLKKHREKFFRIGRIERSESGKARVSYSGSLQM
Ga0179587_103835812	3300026557	Vadose Zone Soil	VKSVEADLKKRREKFFLIGRIGRGESGKARVSYAGSLNLA
Ga0207742_1188491	3300026800	Tropical Forest Soil	EFVKEAEADLKRRREKFFRIGRIERGDTGKARLVYSGALSLA
Ga0207785_10225511	3300026872	Tropical Forest Soil	KEAEADLKRRREKFYRIGRIERGDTGKARLVYSGALNL
Ga0207777_10412892	3300027330	Tropical Forest Soil	VKEVEADLKRRREKFFRIGRIDKGDTGKARVVYSGALNL
Ga0209734_10949542	3300027535	Forest Soil	EADLKRRREKFFRIGRIERGDSGKARVKFSGALSL
Ga0209625_11109511	3300027635	Forest Soil	VEGDLKKRREKFFRIGRIERSDSGKARVAYSGALGL
Ga0209076_10809322	3300027643	Vadose Zone Soil	EADLKKRREKFFLIGRIERGESGKARVSYSGSLNLA
Ga0209118_12000121	3300027674	Forest Soil	VEAELKKHREKFFRIGRIERSESGKARVSYSGSLQM
Ga0209011_11383011	3300027678	Forest Soil	PPQFVKSVEADLKRRREKFFRIGRIERGDSGKACVKFSGALQIH
Ga0209073_102203121	3300027765	Agricultural Soil	VKSVEADLKKRREKFFRIGRVERAESGKSRVAFTGSLNL
Ga0209139_100770181	3300027795	Bog Forest Soil	EAEADLKRRREKFFRIGRIERGDTGKARLVYSGALNL
Ga0209656_102334683	3300027812	Bog Forest Soil	YVKEAEADLKRRREKFFRIGRIERGDTGKARLIYSGALNL
Ga0209701_101479901	3300027862	Vadose Zone Soil	VEADLKKHREKFFLIGRIERGESGKARVVYSGSLQMA
Ga0209526_102908672	3300028047	Forest Soil	EADLKKRREKFFLIGRIGRGESGKARVSYAGSLNLA
Ga0308309_116732431	3300028906	Soil	VKDAEADLKRRREKFFRIGRIERGDTGKARLIYSGALNL
Ga0310038_101753481	3300030707	Peatlands Soil	EVEADLKRRREKFYRIGRIERGDTGKARLVYSGALNL
Ga0318541_106514432	3300031545	Soil	EADLKRRREKFFQIGRIERGDTARARVVYSGALNL
Ga0306917_106921001	3300031719	Soil	HVKNAEADLKRRREKFYRIGRIERGDTGKARLVYSGALSL
Ga0306918_105500112	3300031744	Soil	KVEADLKRRREKFFQIGRIERGDTARARVVYSGALNL
Ga0307475_110114481	3300031754	Hardwood Forest Soil	EGDLKKRREKFLRIGRIERSDSGKARVAYSGALGL
Ga0318521_109903911	3300031770	Soil	EFVKEAEADLKRRREKFFRIGRIERGDTGKARLVYSGALNL
Ga0310912_100557521	3300031941	Soil	EADLKRRREKFFQIGRIERGDTAKARVVYSGALNLG
Ga0310912_110143872	3300031941	Soil	EADLKRRREKFFRIGRIERGDTGKARLVYSGALNL
Ga0310913_102377274	3300031945	Soil	HVKEAEADLKRRREKFFRIGRIERGDTGKARLVYSGALNL
Ga0310910_105763272	3300031946	Soil	SEFVKEAEADLKRRREKFFRIGRIERGDTGKARLVYSGALNL
Ga0306922_115331052	3300032001	Soil	KSVEADLKKRREKFYLIGRMERSDSGKARVAYSGSLHL
Ga0310911_104891472	3300032035	Soil	FVKEAEADLKRRREKFYRIGRIERGDTGKARLVYSGALNL
Ga0318532_103092981	3300032051	Soil	VKEAEADLKRRREKFFKIGRIERGDTGKARLIYSGALNL
Ga0318577_106442291	3300032091	Soil	AEFVKEAEADLKRRREKFFRIGRIERGDTGKARLVYSGALNS
Ga0307470_103027592	3300032174	Hardwood Forest Soil	EADLKRRREKFHRIGRIEKGDSGKARVKFSGSMTL
Ga0307471_1039122172	3300032180	Hardwood Forest Soil	EVALKRRREKFFRIGRIERGDSGKARVKFSGSLGL
Ga0306920_1001172936	3300032261	Soil	LEFVKEAEADLKRRREKFFRIGRIERGDTGKARLVYSGALNL
Ga0335083_113464371	3300032954	Soil	EADLKRRREKFFKIGRIERGDTGKARLIYSGALSL
Ga0335077_116854501	3300033158	Soil	EFVKEVEADLKRRREKFFRIGRIERGDTGKARLVYSGALNL
Ga0335077_119686741	3300033158	Soil	AEHVKNAEADLKRRREKFFRIGRIERGDTGKARLVYSGALNL
Ga0326728_108908872	3300033402	Peat Soil	EAELKRRREKFFLIGRIELNPRRKPRVVYAGELSL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071447

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences