Metagenome / Metatranscriptome Family F071428

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071428
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	75 residues
Representative Sequence	EADARIVRTQARTILATPALLPTVNRAAYKTMLNDFITVANLLQPGPGYGTTPQDDTAWYAALAASNITVS
Number of Associated Samples	93
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	4.10 %
% of genes near scaffold ends (potentially truncated)	95.08 %
% of genes from short scaffolds (< 2000 bps)	87.70 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (62.295 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (13.115 % of family members)
Environment Ontology (ENVO)	Unclassified (29.508 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.295 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.49% β-sheet: 0.00% Coil/Unstructured: 50.51%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF13419	HAD_2	7.38
PF08044	DUF1707	4.92
PF12728	HTH_17	3.28
PF06831	H2TH	1.64
PF01850	PIN	1.64
PF00291	PALP	1.64
PF02350	Epimerase_2	0.82
PF06827	zf-FPG_IleRS	0.82
PF00589	Phage_integrase	0.82
PF00749	tRNA-synt_1c	0.82
PF00877	NLPC_P60	0.82
PF12773	DZR	0.82
PF02310	B12-binding	0.82
PF13520	AA_permease_2	0.82
PF04545	Sigma70_r4	0.82
PF03720	UDPG_MGDP_dh_C	0.82
PF01370	Epimerase	0.82
PF13540	RCC1_2	0.82
PF12848	ABC_tran_Xtn	0.82
PF00271	Helicase_C	0.82
PF02607	B12-binding_2	0.82
PF02720	DUF222	0.82
PF08281	Sigma70_r4_2	0.82
PF13635	DUF4143	0.82
PF14016	DUF4232	0.82
PF14833	NAD_binding_11	0.82
PF13857	Ank_5	0.82
PF03816	LytR_cpsA_psr	0.82
PF00582	Usp	0.82
PF04149	DUF397	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG0266	Formamidopyrimidine-DNA glycosylase	Replication, recombination and repair [L]	1.64
COG0008	Glutamyl- or glutaminyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.82
COG0381	UDP-N-acetylglucosamine 2-epimerase	Cell wall/membrane/envelope biogenesis [M]	0.82
COG0707	UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase	Cell wall/membrane/envelope biogenesis [M]	0.82
COG0791	Cell wall-associated hydrolase, NlpC_P60 family	Cell wall/membrane/envelope biogenesis [M]	0.82
COG1316	Anionic cell wall polymer biosynthesis enzyme TagV/TagU, LytR-Cps2A-Psr (LCP) family (peptidoglycan teichoic acid transferase)	Cell wall/membrane/envelope biogenesis [M]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.30 %
All Organisms	root	All Organisms	37.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.30 %
cellular organisms	root	All Organisms → cellular organisms	37.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.30 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.30 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	32.79 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.30 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	32.79 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.30 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	14.75 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	2.46 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.30 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3.28 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	2.46 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.82 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.30 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	1.64 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	1.64 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	0.82 %
unclassified Acidimicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales	0.82 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.82 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.30 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	1.64 %
unclassified Acidimicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae	1.64 %
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.82 %
Nocardiopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis	0.82 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.82 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.30 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.64 %
Acidimicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1.64 %
Nocardiopsis chromatogenes	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis chromatogenes	0.82 %
Streptomyces fodineus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces fodineus	0.82 %
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.82 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001356\|JGI12269J14319_10075618	Not Available	1826	Open in IMG/M
3300001356\|JGI12269J14319_10137947	Not Available	1076	Open in IMG/M
3300001356\|JGI12269J14319_10144532	Not Available	1034	Open in IMG/M
3300002245\|JGIcombinedJ26739_100424759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1207	Open in IMG/M
3300003505\|JGIcombinedJ51221_10468516	Not Available	508	Open in IMG/M
3300005434\|Ga0070709_11511887	Not Available	545	Open in IMG/M
3300005529\|Ga0070741_11217730	Not Available	634	Open in IMG/M
3300005538\|Ga0070731_10032659	All Organisms → cellular organisms → Bacteria	3517	Open in IMG/M
3300005538\|Ga0070731_10226663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1241	Open in IMG/M
3300005542\|Ga0070732_10364394	Not Available	870	Open in IMG/M
3300005602\|Ga0070762_10240676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1122	Open in IMG/M
3300005610\|Ga0070763_10822952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	550	Open in IMG/M
3300005950\|Ga0066787_10134306	Not Available	551	Open in IMG/M
3300005993\|Ga0080027_10441763	Not Available	526	Open in IMG/M
3300006176\|Ga0070765_101346286	Not Available	673	Open in IMG/M
3300009521\|Ga0116222_1414530	Not Available	586	Open in IMG/M
3300009522\|Ga0116218_1404598	Not Available	609	Open in IMG/M
3300009624\|Ga0116105_1248900	Not Available	505	Open in IMG/M
3300009698\|Ga0116216_10926522	Not Available	521	Open in IMG/M
3300009824\|Ga0116219_10593805	Not Available	609	Open in IMG/M
3300010379\|Ga0136449_103257370	Not Available	626	Open in IMG/M
3300010379\|Ga0136449_104426411	Not Available	517	Open in IMG/M
3300010867\|Ga0126347_1036853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	546	Open in IMG/M
3300010876\|Ga0126361_10540473	Not Available	1115	Open in IMG/M
3300010876\|Ga0126361_10541337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	509	Open in IMG/M
3300010876\|Ga0126361_10703611	Not Available	611	Open in IMG/M
3300010876\|Ga0126361_10896676	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300010876\|Ga0126361_11129553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2190	Open in IMG/M
3300012351\|Ga0137386_10735239	Not Available	709	Open in IMG/M
3300014169\|Ga0181531_10554806	Not Available	711	Open in IMG/M
3300014201\|Ga0181537_10322288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1061	Open in IMG/M
3300014201\|Ga0181537_10646221	Not Available	720	Open in IMG/M
3300014493\|Ga0182016_10303505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis chromatogenes	976	Open in IMG/M
3300014493\|Ga0182016_10649139	Not Available	596	Open in IMG/M
3300014501\|Ga0182024_11378827	Not Available	812	Open in IMG/M
3300014838\|Ga0182030_10019349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12968	Open in IMG/M
3300014838\|Ga0182030_10359309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1549	Open in IMG/M
3300014838\|Ga0182030_10494390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1224	Open in IMG/M
3300014838\|Ga0182030_10849218	Not Available	827	Open in IMG/M
3300014838\|Ga0182030_11350805	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300017821\|Ga0187812_1075936	Not Available	1111	Open in IMG/M
3300017821\|Ga0187812_1117432	Not Available	864	Open in IMG/M
3300017822\|Ga0187802_10019341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2325	Open in IMG/M
3300017822\|Ga0187802_10458508	Not Available	505	Open in IMG/M
3300017926\|Ga0187807_1093952	Not Available	941	Open in IMG/M
3300017946\|Ga0187879_10435606	Not Available	726	Open in IMG/M
3300017948\|Ga0187847_10121305	Not Available	1433	Open in IMG/M
3300017970\|Ga0187783_10051063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3051	Open in IMG/M
3300017970\|Ga0187783_10632975	Not Available	773	Open in IMG/M
3300017972\|Ga0187781_10362139	Not Available	1033	Open in IMG/M
3300017975\|Ga0187782_10092836	Not Available	2217	Open in IMG/M
3300017995\|Ga0187816_10224199	Not Available	819	Open in IMG/M
3300018001\|Ga0187815_10493238	Not Available	524	Open in IMG/M
3300018007\|Ga0187805_10411537	Not Available	629	Open in IMG/M
3300018007\|Ga0187805_10435771	Not Available	611	Open in IMG/M
3300018017\|Ga0187872_10183406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	977	Open in IMG/M
3300018025\|Ga0187885_10086050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1545	Open in IMG/M
3300018035\|Ga0187875_10730282	Not Available	520	Open in IMG/M
3300018035\|Ga0187875_10746310	Not Available	513	Open in IMG/M
3300018037\|Ga0187883_10080679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1703	Open in IMG/M
3300018040\|Ga0187862_10511511	Not Available	721	Open in IMG/M
3300018043\|Ga0187887_10404958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	805	Open in IMG/M
3300018043\|Ga0187887_10890986	Not Available	527	Open in IMG/M
3300018046\|Ga0187851_10295009	Not Available	941	Open in IMG/M
3300018046\|Ga0187851_10675120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	583	Open in IMG/M
3300018046\|Ga0187851_10816788	Not Available	524	Open in IMG/M
3300018062\|Ga0187784_10135402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2012	Open in IMG/M
3300018062\|Ga0187784_10635120	Not Available	857	Open in IMG/M
3300018085\|Ga0187772_10343001	Not Available	1031	Open in IMG/M
3300018086\|Ga0187769_11161803	Not Available	584	Open in IMG/M
3300019787\|Ga0182031_1281286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	971	Open in IMG/M
3300020582\|Ga0210395_11104754	Not Available	585	Open in IMG/M
3300021377\|Ga0213874_10349339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	566	Open in IMG/M
3300021388\|Ga0213875_10199071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	942	Open in IMG/M
3300021401\|Ga0210393_10811527	All Organisms → cellular organisms → Bacteria → Acidobacteria	761	Open in IMG/M
3300021402\|Ga0210385_10731921	Not Available	758	Open in IMG/M
3300021402\|Ga0210385_11260684	Not Available	567	Open in IMG/M
3300021406\|Ga0210386_10802652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	809	Open in IMG/M
3300021433\|Ga0210391_11233541	Not Available	578	Open in IMG/M
3300021474\|Ga0210390_10733859	Not Available	821	Open in IMG/M
3300027334\|Ga0209529_1041116	Not Available	788	Open in IMG/M
3300027590\|Ga0209116_1097603	Not Available	644	Open in IMG/M
3300027604\|Ga0208324_1171160	Not Available	585	Open in IMG/M
3300027676\|Ga0209333_1163710	Not Available	596	Open in IMG/M
3300027692\|Ga0209530_1018960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2085	Open in IMG/M
3300027767\|Ga0209655_10271603	Not Available	550	Open in IMG/M
3300027829\|Ga0209773_10183852	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300027857\|Ga0209166_10164162	Not Available	1207	Open in IMG/M
3300027869\|Ga0209579_10818524	Not Available	503	Open in IMG/M
3300027905\|Ga0209415_10377758	Not Available	1160	Open in IMG/M
3300027908\|Ga0209006_10613402	Not Available	898	Open in IMG/M
3300028759\|Ga0302224_10335280	Not Available	610	Open in IMG/M
3300028781\|Ga0302223_10134582	Not Available	816	Open in IMG/M
3300028813\|Ga0302157_10083817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2062	Open in IMG/M
3300028863\|Ga0302218_10185071	Not Available	663	Open in IMG/M
3300028877\|Ga0302235_10022601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces fodineus	3386	Open in IMG/M
3300028877\|Ga0302235_10135399	Not Available	1105	Open in IMG/M
3300028879\|Ga0302229_10007512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6966	Open in IMG/M
3300029883\|Ga0311327_10928955	Not Available	501	Open in IMG/M
3300029943\|Ga0311340_10335863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1419	Open in IMG/M
3300029999\|Ga0311339_11356126	Not Available	641	Open in IMG/M
3300030056\|Ga0302181_10034181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2783	Open in IMG/M
3300030056\|Ga0302181_10267848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	768	Open in IMG/M
3300030490\|Ga0302184_10055898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1905	Open in IMG/M
3300030524\|Ga0311357_10365251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1369	Open in IMG/M
3300030580\|Ga0311355_11883826	Not Available	505	Open in IMG/M
3300030688\|Ga0311345_10267663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1650	Open in IMG/M
3300031057\|Ga0170834_107134786	Not Available	1021	Open in IMG/M
3300031233\|Ga0302307_10034039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2780	Open in IMG/M
3300031234\|Ga0302325_10434927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2022	Open in IMG/M
3300031236\|Ga0302324_100863926	Not Available	1249	Open in IMG/M
3300031708\|Ga0310686_107431411	Not Available	729	Open in IMG/M
3300032160\|Ga0311301_10971452	Not Available	1129	Open in IMG/M
3300032160\|Ga0311301_11018144	Not Available	1092	Open in IMG/M
3300032160\|Ga0311301_12491923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	579	Open in IMG/M
3300032805\|Ga0335078_11148724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	903	Open in IMG/M
3300032828\|Ga0335080_12305018	Not Available	515	Open in IMG/M
3300032898\|Ga0335072_11717201	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300033158\|Ga0335077_10018622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8687	Open in IMG/M
3300033158\|Ga0335077_10489594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1303	Open in IMG/M
3300034065\|Ga0334827_058551	Not Available	1389	Open in IMG/M
3300034124\|Ga0370483_0132647	Not Available	831	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.36%
Host-Associated	Host-Associated	1.64%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.41%
Aquatic	Environmental → Aquatic	22.95%
Plants	Host-Associated → Plants	1.64%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.02%
Freshwater	Environmental → Aquatic → Freshwater	22.95%
Peat	Environmental → Terrestrial → Peat	16.39%
Roots	Host-Associated → Plants → Roots	1.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.51%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	22.95%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	20.49%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	16.39%
Loam	Environmental → Terrestrial → Soil → Loam	9.02%
Unclassified	Host-Associated → Plants → Roots → Unclassified	1.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.95%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	16.39%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	14.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.48%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	9.02%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.20%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	7.38%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.56%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	1.64%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.82%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	13.11%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	11.48%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	10.66%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	7.38%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.56%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	6.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.74%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.92%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	4.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.10%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.46%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.46%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	2.46%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.64%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	1.64%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.82%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.82%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.82%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.82%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.82%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005950	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010867	Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300027334	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028781	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_3	Environmental	Open in IMG/M
3300028813	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3	Environmental	Open in IMG/M
3300028863	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_1	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300030490	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030688	II_Bog_N2 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300034065	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 1-5	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_100756181	3300001356	Peatlands Soil	TLAGALVIENQATTVANHLIFEADARTVATQARTILAHPALLPTEHRAAYVTMLNDFITLAGLLQPGAHYGTTAQDYTAWYTALRATNITVA*
JGI12269J14319_101379471	3300001356	Peatlands Soil	SALVIENQATTVANHLIFEAAARTVRTQARTILANPALLPAVHRAAYVSMLNDFITVANMLQPGAHYGTTPQDYTAWYTALRASNITVA*
JGI12269J14319_101445321	3300001356	Peatlands Soil	ASALVIENQATTVANHLIFEAAARTVRTEARTILANPALLPAVHRAAYVSMLNDFITVANMLQPGAHYGTTPQDYTAWYTALRASNITVA*
JGIcombinedJ26739_1004247593	3300002245	Forest Soil	DLETEAHDDSTANHLAFEADARTVRTQARTILATTALLPTHNRAAYQQMLHKFITVTDILQPGTRYGTTPQDYTAWWAALTASNITVS*
JGIcombinedJ51221_104685162	3300003505	Forest Soil	TVANHLAFEADARIVRALAQQILTTPALQPTVHPAEYKNMLTDFIVVANLLQPGPGYGTTPQDYTAWNAAMNASNINVA*
Ga0070709_115118871	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	AMDLETESHSDTVANHLIFEADARVVRSQAHKILATPSLLPRHNRAAYQHMLHKFITVANLLQPGPGYGTTPQDYDAWYAAMRASNITVW*
Ga0070741_112177302	3300005529	Surface Soil	TLAMDLETESHSDTVANHLIFEADARVVRSQAHKILATPSLLPSHNRAAYKQMLHKFITVANLLQPGAGYGTTAQDYTAWYAAMRASNITVW*
Ga0070731_100326595	3300005538	Surface Soil	ALVIENQATTVANHLVFEAAARTVRTQAQQILAHPALLPAVHRAAYVSMLNDFITVADMLQPGTHYGTTAQDYTAWYTALRASNITVA*
Ga0070731_102266631	3300005538	Surface Soil	AGALVIENQATTAANHLTFEADARTVATQARTILTHPNLLPTTHRAAYVTMLNDFITLAGLLQPGTGYGTTAQDYTAWYTALRATNITIS*
Ga0070732_103643943	3300005542	Surface Soil	FEAAARTVAAQARTILADPALLPATHRAAYQAMLHDFITLANLLQPGTHYGTTAQDYTAWYTALRASNITIS*
Ga0070762_102406763	3300005602	Soil	AALEVENYSPTVANHLIFEADARTVRTQARTILATPALLPTVHQAAYKTMLNDFITVANLLQPGPGYGTTPQDDTAWNTALAASNIIVA*
Ga0070763_108229522	3300005610	Soil	ADARTVRAQAEHILATPALLPAVHRAEYQTMLNDFITVANLLQPGPGYGTTPQDYTAWYAALHASNINVA*
Ga0066787_101343061	3300005950	Soil	EADARIVRTQARTILATPALLPTVNRAAYKTMLNDFITVANLLQPGPGYGTTPQDDTAWYAALAASNITVS*
Ga0080027_104417632	3300005993	Prmafrost Soil	MDLETESHSDTVANHLIFEADARIVRSQARTILATPSLLPTHHRAAYQRMLHKYIKVANLLQPGPGYGTTPQDYAAWYDAMRASNITVW*
Ga0070765_1013462861	3300006176	Soil	ESHSPTVANHLAFEADARVVRAEAEKILSTRALLPTHNRRAYERMLKDFITVANLLQPGPGYGTTPQDYAAWYTALKASDITVW*
Ga0116222_14145301	3300009521	Peatlands Soil	DVDVLASALVIENQATTVANHLSFEAAARTVATQARTILAHPALLPTEHRAAYVTMLNDFITVANMLQPGARYGTTAQDYTAWYTALRATNITIT*
Ga0116218_14045981	3300009522	Peatlands Soil	ADARTVRTQAHKILTTRTLLPAVHRAAYVSMLNDFITVANMLQPGAHYGTTPQDYTAWYTALRASNITVA*
Ga0116105_12489001	3300009624	Peatland	AQARQILSTPALLPAHNRAAYTAMLTDFVTVANLLQPGADYGTTPQDYVAWYQALHASNITVY*
Ga0116216_109265221	3300009698	Peatlands Soil	QARTILANPALLPAVHRAAYVTMLNDFITVANMLQPGAHYGTTPQDYTAWYTALRASNITVA*
Ga0116219_105938051	3300009824	Peatlands Soil	FEAAARTVRTQARTILANPALLPAVHRAAYVTMLNDFITVANMLQPGAHYGTTPQDYTAWYTALRASNITVA*
Ga0136449_1032573702	3300010379	Peatlands Soil	ALVIENQATTVANHLIFEADARTVATQARTILAHPALLPTEHRAAYVTMLNDFITLAGLLQPGAHYGTTAQDYTAWYTALRATNITVA*
Ga0136449_1044264111	3300010379	Peatlands Soil	HLIFEAAARTVRTEARTILANPALLPAVHRAAYVSMLNDFITVANMLQPGAHYGTTAQDYTAWYTALRASNITVA*
Ga0126347_10368531	3300010867	Boreal Forest Soil	KILAHRALLPTHNRAAYKTMLKDFIVVANLLQPGPGYGTTPQDYKAWNTALRASNIIVW*
Ga0126361_105404731	3300010876	Boreal Forest Soil	ARKILRTPALLPTVNRPAYKRMLNDFIVVANLLQPGPGYGTTPQDYDAWYKALHASNINVS*
Ga0126361_105413371	3300010876	Boreal Forest Soil	ARKILRTPALLPTVNRPAYKRMLNDFIVVANLLQPGPGYGTTPQDYVAWYKALHASNINVS*
Ga0126361_107036112	3300010876	Boreal Forest Soil	AVRAQARTILGTPALLPKVNRAAYQQMLNDFITVADLLQPGPGYGTTPQDYTAWYKALHASNITVS*
Ga0126361_108966761	3300010876	Boreal Forest Soil	PALLPTVNRPAYKRMLNDFIVVANLLQPGPGYGTTPQDYAAWYKALHASNITVY*
Ga0126361_111295534	3300010876	Boreal Forest Soil	RTRALLPKHNLAAYKRMLNDFITVANLLQPGRGYGTTHQDYVAWYTALNASNITVY*
Ga0137386_107352391	3300012351	Vadose Zone Soil	RVVRAQARKILATPALLPKHNRAAYKRMLHKFIIVANMLQPGPDYGTTPQDYAAWYAAMRASNITVW*
Ga0181531_105548062	3300014169	Bog	FEADARTVRAQAARILATPALLPTLHQAAYKVMLNDFITVANLLQPGPGYGTTAQDDTAWNTALAASNITVS*
Ga0181537_103222882	3300014201	Bog	AARTVRAEARTILTTPALLPAANPGGYERMLNDFITVANLLQPGPGYGTTAQDDTAWYTAMNASNITVA*
Ga0181537_106462211	3300014201	Bog	KILATGALLPTVHQAAYKTMLNDFITVANLLQPGPGYGTTPQDDTAWNTALTASNVTVS*
Ga0182016_103035051	3300014493	Bog	TVANHLLFEADARIVRTEARKILTTPALLPATNRGGYERMLKDFIVVANLLQPGPGYGTTAQDDTAWYTALSASNITVA*
Ga0182016_106491392	3300014493	Bog	EEAQRILADPALLPTVNRAGYEQMLNDFIVVANLLQPGPDYGTTAQDDAAWAVAMNASNINVS*
Ga0182024_113788272	3300014501	Permafrost	ANPALLPTVNRAGYEQMLDDFIVVANLLQPGPDYGTTAQDDAAWAVAMNASNIDVS*
Ga0182030_1001934914	3300014838	Bog	ANHLAFEAGARTVRAEARTILGTPALLPATNRGGYERMLKDFIVVANLLQPGPDYGTTAQDDTAWYTALSASNITVA*
Ga0182030_103593094	3300014838	Bog	ANHLAFEAGARTVRTEARTILSTPALLPATNRGGYERMLKDFIVVANLLQPGPGYGTTAQDDTAWYTALSASNITVA*
Ga0182030_104943901	3300014838	Bog	AFEAGARTVRTEARTILSTPALLPATNRGGYERMLKDFIVVANLLQPGPGYGTTAQDDTAWYTALSASNITVA*
Ga0182030_108492181	3300014838	Bog	TILSTPALLPAHNRAAYTAMLTDFVTVANLLQPGAGYGTTPQDYTAWYQALHASNITIY*
Ga0182030_113508051	3300014838	Bog	TPALLPAHNRAAYTAMLTDFVTVANLLQPGAGYGTTPQDYVAWYQALHASNITIY*
Ga0187812_10759361	3300017821	Freshwater Sediment	HLVFEADARTVRTQAHTILANPALLPTEHRAAYVTMLNDFITVANMLQPGADYGTTAQDYTAWYTALRASNITVA
Ga0187812_11174321	3300017821	Freshwater Sediment	TQARTILANPALLPATGRTAYQAMLTDFITLAGLLQPGAHYGTTAQDYTAWYTALRATNITVA
Ga0187802_100193411	3300017822	Freshwater Sediment	VGSVANHLVFEADARTVRTQARTILANPALLPTEHRAAYVTMLNDFITVANMLQPGADYGTTAQDYTAWYTALRASNITVA
Ga0187802_104585081	3300017822	Freshwater Sediment	IAGALLNENQSGTVANHLVFEADARTMRAEARTILANPALLPATGRVGYEAMLNDFITVAIMLQPGPHYGTTAQDYTAWYGALRASNITVS
Ga0187807_10939522	3300017926	Freshwater Sediment	TTSALLPTVNRAAYQGMLHKFITVADMLQPGANYGTTDQDYTAWWAALSASNITVS
Ga0187879_104356062	3300017946	Peatland	HLIFEADARVVRSQAEKILATPSLLPRVHRAAYKRMLQKFITVADLLQPGAGYGTTAQDYAAWYDAMRASNITVW
Ga0187847_101213052	3300017948	Peatland	VEAHAPTVANNLVFDARVLRTEARTILRTPALLPTHNRAAYQQMLNDFITVANLLQPGPGYGTTPQDYTAWYQALNASNITVY
Ga0187783_100510631	3300017970	Tropical Peatland	ADARAVRTQARDILAHPALLPATGRTAYTAMLTDFITVANLLQPGPGYGTTTQDYTAWYTALRASNITIS
Ga0187783_106329752	3300017970	Tropical Peatland	FEADARAVRTQARDILAHPALLPATGRTAYTAMLTDFINLANLLQPGPGYGTTTQDYTAWYTALRASNITIS
Ga0187781_103621392	3300017972	Tropical Peatland	SQATTAANHLVFEADARTVRARARAILADPALLPATGRAAYRVMLDDFITVADMLQPGPDYGTTAQDYTAWYTALRASNITVS
Ga0187782_100928362	3300017975	Tropical Peatland	VIESQATTAANHLVFEADARTVRAQARAILADPALLPATGRAAYRVMLDDFITVADMLQPGPDYGTTAQDYTAWYTALRASNITVS
Ga0187816_102241991	3300017995	Freshwater Sediment	NHLVFEADARTVRTQARTILANPALLPTQHRAAYVTMLNDFITLANMLQPGAHYGTTAQDYTAWYTALRATNITIS
Ga0187815_104932381	3300018001	Freshwater Sediment	RTVRAQADKILATRALLPTHNRAAYQRMLKDFITVANLLQPGPGYGTTPQDYTAWYTALKASDITIW
Ga0187805_104115371	3300018007	Freshwater Sediment	TVRTQARTILANPALLPTEHRAAYVTMLNDFITVANMLQPGADYGTTAQDYTAWYTALRASNITVA
Ga0187805_104357711	3300018007	Freshwater Sediment	VRTQAQQILAHPALLPAIHRAAYVSMLNDFITLANMLQPGTRYGTTAQDYTAWYTALRASNITVA
Ga0187872_101834061	3300018017	Peatland	LVFEADARVVRGEAQRILANPALLPTVNRTGYEQMLSDFIVVANLLQPGPDYGTTAQDDAAWAAAMNASNINVS
Ga0187885_100860503	3300018025	Peatland	ANHLVFEADARVVRGEAQRILADPALLPTVNRAGYQQMLNDFIVVANLLQPGPDYGTTAQDDAAWAVAMNASNVNVS
Ga0187875_107302822	3300018035	Peatland	LEAENYSPTVANHLTFEADARTVRTQAAKILATPALLPAIHQAAYKTMLNDFITVANLLQPGPGYGTTPQDDTAWYTALAASNITVA
Ga0187875_107463102	3300018035	Peatland	ARIVRAQARQILSTPALLPAHNRAAYTAMLTDFVTVANLLQPGADYGTTPQDYVAWYQALHASNITVY
Ga0187883_100806793	3300018037	Peatland	ANHLIFEADARVVRSQAEKILATPSLLPRVHRAAYKRMLQKFITVADLLQPGAGYGTTAQDYAAWYDAMRASNITVW
Ga0187862_105115113	3300018040	Peatland	TVANHLVFEADARVVRGGAQRILANPALLPTVNRTGYEQMLSDFIVVANLLQPGPDYGTTAQDDAAWAAAMNASNINVS
Ga0187887_104049582	3300018043	Peatland	ILGTPALLPNVNRAGYELMLRDFIVVANLLQPGPGYGTTAQDDTAWYAALSASNINVS
Ga0187887_108909861	3300018043	Peatland	RKILSTRALLPKHNLAAYKAMLNDFIVVANLLQPGPGYGTTHQDYVAWYKALNASNITVY
Ga0187851_102950091	3300018046	Peatland	RAEAQKILASPALLPTVNRAAYEGMLNDFTVVANLLQPGPGYGTTPQDYAAWDMAMHATNINVS
Ga0187851_106751201	3300018046	Peatland	TVGNHLVFEADARVVRAEARKILSTRALLPKHNLAAYKRMLNDFIVVANLLQPGPGYGTTHQDYVAWYKALNASNITVY
Ga0187851_108167882	3300018046	Peatland	SLAAALQTEAHAPTVANHLVFEADARVVRAEARKILFTRALLPKHNLAAYNTMLNDFITVANLLQPGPDYGTTPQDYVAWYQALHASNITVY
Ga0187784_101354022	3300018062	Tropical Peatland	VSGRGPLVIESHAATAANHLVFEADARTVRAQARAILADPALLPATGRAAYRVMLDDFITVADMLQPGPDYGTTAQDYTAWYTALRASNITVS
Ga0187784_106351201	3300018062	Tropical Peatland	FEADARTVRAQARTILADPALLPAVHRAAYVTMLNDFFTVANMLQPGPQYGTTAQDYTAWYTALRATNITIS
Ga0187772_103430011	3300018085	Tropical Peatland	TTVANHLVFEADARTVRSEARAILADPALLPAVHRAAYVTMLNDFITVANMLQPGPQYGTTTQDYTAWYAALRASNITVA
Ga0187769_111618031	3300018086	Tropical Peatland	ENQSDTAANHLTFEADARAVRAQARTILASPALLPNVNRAAYEHMLNDFITVATMLQPGPGYGTTAQDYTAWYAALRATNITVS
Ga0182031_12812863	3300019787	Bog	NHLIFEADARIVRAQARTILSTPALLPAHNRAAYTAMLTDFVTVANLLQPGADYGTTPQDYTAWYQALHASNITVY
Ga0210395_111047541	3300020582	Soil	ANHLAFEADARTVRTQAQKILATPALLPTHNHAAYERMLGDFITVANLLQPGPGYGTTPQDYAAWYTATQASDITVW
Ga0213874_103493392	3300021377	Plant Roots	TEDHAPTAANHLAFEADARVVRAQAEKILATPRLLPAHHRAGYKKMLREFITVANLLQPGAGYGTTPQDYTAWYAAMRASNITVW
Ga0213875_101990711	3300021388	Plant Roots	NHLVFEADARVVRAEAEKILATPALLPTVNRKAYERMLKDFITVANMLQPGPDYGTTAQDYAAWYTALRASNINVW
Ga0210393_108115271	3300021401	Soil	ANRLACEADARVVRAEAEHILATSALLPAVHRAEYKTMLNDFITVANLLQPGPGYGTTPQDYTAWNTALKASNITIW
Ga0210385_107319212	3300021402	Soil	DTLASALVIENQATTVANHLVFEAAARTVRTEARTILADPALLPATHRAAYVTMLNDFITVANMLQPGAHYGTTAQDYTAWYTALRASNITVA
Ga0210385_112606841	3300021402	Soil	HLVFEADARVVRAEAEKILHTSALLPTHNRAAYKQMLKDFITVANLLQPGPGYGTTPQDDVAWNTAMKASNITVW
Ga0210386_108026521	3300021406	Soil	RVVRAQAEHILATPALLPAVHRAEYQTMLTDFITVAGLLQPGPGYGTTPQDYTAWYAALHASNITVA
Ga0210391_112335411	3300021433	Soil	PTVANHLVFEADARIVRAEARKILATRALLPAVNQAAYERMLNDFITVANLLQPGPGYGTKTQDDTAWDAALIASNITVT
Ga0210390_107338591	3300021474	Soil	VDTLASALVIENQATTVANHLIFEADARTVRTEARTILANPALLPATHRAAYVTMLNDFITVANMLQPGAHYGTTAQDYTAWYTALRASNITVA
Ga0209529_10411161	3300027334	Forest Soil	VVRAQARQILAAPALLPAVHRAEYKTMLNDFITVANLLQPGPGYGTTPQDDTAWNTALAASNIIVA
Ga0209116_10976031	3300027590	Forest Soil	IFEADARTVRAQADKILATSALLPTVNRAAYQQMLHRFITVADMLQPGPGYGTTSQDDTAWSAAINASNIAVS
Ga0208324_11711602	3300027604	Peatlands Soil	RAQAQKIQADPALLPTVNQAAYQTMLNDFIVVANLLQPGPGYGTTAQDYTAWNAAMNATNINVS
Ga0209333_11637102	3300027676	Forest Soil	VKAQAAEILATSALLPTVHRAAYQTMLNDFITVANLLQPGPGYGTTPQDDTAWYAALAASNITVS
Ga0209530_10189601	3300027692	Forest Soil	VRAQADKILATSALLPTVNRAAYQQMLHRFITVADMLQPGPGYGTTPQDDTAWNTALAASNLTVS
Ga0209655_102716031	3300027767	Bog Forest Soil	VCLGHQAIGEAYGGRVVRAEATKILSTRALLPTHNRAAYQRMLKDFITVANLLQPGPDYGTTPQDYTAWNTALKASDITVW
Ga0209773_101838522	3300027829	Bog Forest Soil	VAGDLETEAHAPTVANHLVFETDARVMRAQALKILRTSALLPIHNRAAYKRMLNDFITVANLLQPGLGYGTRAQDNAAWLKALRASNIQVW
Ga0209166_101641621	3300027857	Surface Soil	ILAHPALLPATHRAAYQAMLNDFITLANLLQPGTHYGTTAQDYTAWYTALRASNITIS
Ga0209579_108185241	3300027869	Surface Soil	DVDTLASALVIENQVTTVANHLVFEAAARTVATQARTILADRALLPATHRTAYVTMLNDFISLAGLLQPGAHYGTTAQDYTAWYTALRATNITVS
Ga0209415_103777581	3300027905	Peatlands Soil	DVDTLASALVIENQATTVANHLVFEADARTVATQARTILAHPALLPATGRAAYVTMLNDFITVASLLQPGAHYGTTAQDYTAWYTALRATDITIA
Ga0209006_106134022	3300027908	Forest Soil	ILATPALLPTVHQAAYKTMLNDFITVANLLQPGPGYGTTPQDDTAWNTALAASNIIVA
Ga0302224_103352802	3300028759	Palsa	ANHLIFEADARTVRAQADKILATSALLPTVNRAAYRQMLHRFITVADMLQPGADYGTTSQDYTAWWAALNASDIAVS
Ga0302223_101345821	3300028781	Palsa	IVRTEANTILATRALLPTVNQAAYKLMLKDFITVANLLQPGPGYGTTPQDDTAWYAALSASNVTVA
Ga0302157_100838174	3300028813	Bog	RVVRGEAQRILADPPLLPTVNRAGYQQMLNDFIVVANLLQPGPDYGTTAQDDAAWAVAMNASNVNVS
Ga0302218_101850712	3300028863	Palsa	VFEADARIVRTEANTILATRALLPTVNQAAYKLMLKDFITVANLLQPGPGYGTTPQDDTAWYAALSASNVTVA
Ga0302235_100226014	3300028877	Palsa	ARKILSTRKLLPTVNEAAYKRMLNDFITVANLLQPGPGYGTTAQDYTAWYKALNASNINV
Ga0302235_101353992	3300028877	Palsa	TVANHLVFEADARIVKAQAAKILATPALLPTVHQAAYKTMLNDFITVANLLQPGPGYGTTPQDDTAWNTALAASNITVS
Ga0302229_100075129	3300028879	Palsa	VDALAGDLEIEAHAPTVANHLIFEADARTVRAQADKILATSALLPTVNRAAYRQMLHRFITVADMLQPGADYGTTSQDYTAWWAALNASDIAVS
Ga0311327_109289551	3300029883	Bog	VVRGGAQRILANPALLPTVNRAGYEQMLDDFIVVANLLQPGPDYGTTAQDDAAWAVAMNASNINVS
Ga0311340_103358633	3300029943	Palsa	APTVANHLVFEADARTVRAQAAKILATPALLPAVHQAAYKTMLNDFITVANLLQPGPGYGTTPQDDTAWFAALAASNITVS
Ga0311339_113561262	3300029999	Palsa	LRTPALLPKVNRARYERMLKDFIVVANLLQPGPGYGTTTQDDTAWYAALSASNITVS
Ga0302181_100341811	3300030056	Palsa	TILATPALLPAIHQAAYKTMLNDFITVANLLQPGPGYGTTPQDDTAWYTALAASNITVA
Ga0302181_102678482	3300030056	Palsa	ANHLIFEADARTVRAQADKILATPALLPTINRAAYQHMLHSFVTVADMLQPGADYGTTSQDYTAWYAALNASNITVS
Ga0302184_100558983	3300030490	Palsa	NYSPTVANHLVFEADARIVKAQAAKILATPALLPTVHQAAYKTMLNDFITVANLLQPGPGYGTTPQDDTAWNTALAASNITVS
Ga0311357_103652511	3300030524	Palsa	LETESQSPTVANHLVFEADARVVRGGAQRILANPALLPTVNRAGYEQMLDDFIVVANLLQPGPDYGTTAQDDAAWAVAMNASNINVS
Ga0311355_118838262	3300030580	Palsa	LEIEAHAPTVANHLIFEAVARTVRAQADKILATPALLPRVNRAAYQLMLHRFITVADLLQPGAGYGTASQDYAAWAAALDASDIAVS
Ga0311345_102676631	3300030688	Bog	ESQSPTVANHLVFEADARGVRGEAQRILADPALLPTVNRAGYEQMLDDFIVVANLLQPGPDYGTTAQDDAAWAVAMNASNINVS
Ga0170834_1071347861	3300031057	Forest Soil	QARTILANHALLPTVHRAAYVTMLNDFITVANMLQPGTHYGTTAQDYTAWYTALRASNITVA
Ga0302307_100340391	3300031233	Palsa	TVANHLVFEADARVVRGGAQRILANPALLPTVNRAGYEQMLDDFIVVANLLQPGPDYGTTAQDDAAWAVAMNASNINVS
Ga0302325_104349273	3300031234	Palsa	AENYSPTVANHLTFEADARTVRTQAAKILATPALLPAVHQAAYKTMLNDFITVANLLQPGPGYGTTPQDDTAWYTALAASNITVA
Ga0302324_1008639261	3300031236	Palsa	GDLEIEAHAPTVANHLIFEADARTVRAQADKILATSALLPTVNRAAYRQMLHRFITVADMLQPGADYGTTSQDYTAWWAALNASDIAVS
Ga0310686_1074314112	3300031708	Soil	ENQATTVANHLVFEADARTVRTEARTILADPALLPAAHRAAYVTMLNDFITVANMLQPGAHYGTTAQDYTAWYTALRASNITVA
Ga0311301_109714521	3300032160	Peatlands Soil	RTVRTEARTILADPALLPTHPPRRLGHMLNDFITVANMLQPGAHYGTTAQDYTAWYTALRATNITIT
Ga0311301_110181441	3300032160	Peatlands Soil	APTIANHLAFEADARTVRTQAHTILTTRTLLPTHNRAAYQRMLKDFITVANLLQPGPGYGTTPQDYTAWYTALKASNITIW
Ga0311301_124919232	3300032160	Peatlands Soil	ALLPARNQAAYQQMLHKFITLTDILQPGTRYGTTPQDYTAWWAALRASDITVS
Ga0335078_111487242	3300032805	Soil	VEAHAPTIANHVIFEADARVVRAQAEHILTTPALLPTEHLTAYKAMLTDFITVANLLQPGPGYGTTSQDYTAWYTALKASNITVW
Ga0335080_123050182	3300032828	Soil	ATPALLPTVHRAAYEQMLKDFIVVANLLQPGPGYGTTPQDYAAWDVAMRASNITVS
Ga0335072_117172012	3300032898	Soil	HLTFEADARVVRAQAEKILSTPALLPTRNRGAYEQMLKDFIVVSDLLQPGPGYGTTAQDWAAWDTAERASDITVW
Ga0335077_100186221	3300033158	Soil	SHAPTVANHLAFEADARTVRAQAEKILRTPALLPHHNRAAYQRMLRDFITVANLLQPGPGYGTTSQDYTAWYTALKASNITVW
Ga0335077_104895941	3300033158	Soil	VANHLVFEADARIVRAQAQKILANPALLPTVNRAAYQAMLNDFIVVANLLQPGPGYGTTPQDYTAWNAAMNATSITVS
Ga0334827_058551_1189_1389	3300034065	Soil	VVRAQARTILSTPALLPAHNRAAYTAMLTDFVTVANLLQPGADYGTTPQDYTAWYQALHASNITVY
Ga0370483_0132647_570_830	3300034124	Untreated Peat Soil	EIEAHAPTVANHLIFEADARTVRAQADKILATSALLPTVNRAAYRQMLHRFITVADMLQPGADYGTTSQDYTAWWAALNASDIAVS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071428

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences