Metagenome / Metatranscriptome Family F071417

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F071417
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	70 residues
Representative Sequence	MGLLVAYLVCLIVGQAITIGIGLSIDRYYSPTASLPISLFLYFAMFWVAWKVAVRITEPKAETSAPPSAG
Number of Associated Samples	79
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.69 %
% of genes near scaffold ends (potentially truncated)	21.31 %
% of genes from short scaffolds (< 2000 bps)	84.43 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (62.295 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (25.410 % of family members)
Environment Ontology (ENVO)	Unclassified (48.361 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.918 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.10% β-sheet: 0.00% Coil/Unstructured: 44.90%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF02566	OsmC	19.67
PF01734	Patatin	8.20
PF12146	Hydrolase_4	4.92
PF12695	Abhydrolase_5	2.46
PF00082	Peptidase_S8	1.64
PF07729	FCD	0.82
PF13193	AMP-binding_C	0.82
PF00079	Serpin	0.82
PF00753	Lactamase_B	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	19.67
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	19.67
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	8.20
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	8.20
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	8.20
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.82
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.82
COG4826	Serine protease inhibitor	Posttranslational modification, protein turnover, chaperones [O]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.30 %
Unclassified	root	N/A	37.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.30 %
Unclassified	root	N/A	37.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.30 %
Unclassified	root	N/A	37.70 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	59.84 %
Unclassified	root	N/A	37.70 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	55.74 %
Unclassified	root	N/A	37.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.02 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.70 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	3.28 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.64 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.70 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.28 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.64 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.70 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.28 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.64 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.70 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.28 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.64 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.82 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_11205857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	908	Open in IMG/M
3300002568\|C688J35102_120657827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1306	Open in IMG/M
3300004268\|Ga0066398_10046122	Not Available	864	Open in IMG/M
3300004633\|Ga0066395_10146090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1193	Open in IMG/M
3300004633\|Ga0066395_10785708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	570	Open in IMG/M
3300004778\|Ga0062383_10676047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	527	Open in IMG/M
3300004779\|Ga0062380_10081155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1167	Open in IMG/M
3300004782\|Ga0062382_10527596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	571	Open in IMG/M
3300005175\|Ga0066673_10554241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	673	Open in IMG/M
3300005332\|Ga0066388_100029264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5120	Open in IMG/M
3300005332\|Ga0066388_100105788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3293	Open in IMG/M
3300005332\|Ga0066388_100546603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1788	Open in IMG/M
3300005332\|Ga0066388_101301099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1253	Open in IMG/M
3300005332\|Ga0066388_102382240	All Organisms → cellular organisms → Bacteria → Proteobacteria	960	Open in IMG/M
3300005332\|Ga0066388_102572932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	926	Open in IMG/M
3300005332\|Ga0066388_103259003	Not Available	829	Open in IMG/M
3300005332\|Ga0066388_105656287	Not Available	633	Open in IMG/M
3300005337\|Ga0070682_101321850	Not Available	613	Open in IMG/M
3300005436\|Ga0070713_101309184	Not Available	702	Open in IMG/M
3300005456\|Ga0070678_102062166	Not Available	540	Open in IMG/M
3300005587\|Ga0066654_10155798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1163	Open in IMG/M
3300005713\|Ga0066905_100080300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2140	Open in IMG/M
3300005713\|Ga0066905_100269260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1320	Open in IMG/M
3300005713\|Ga0066905_100783100	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300005713\|Ga0066905_101157693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	689	Open in IMG/M
3300005713\|Ga0066905_101481924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	617	Open in IMG/M
3300005713\|Ga0066905_102138849	Not Available	521	Open in IMG/M
3300005764\|Ga0066903_102407428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1018	Open in IMG/M
3300005764\|Ga0066903_107181079	Not Available	577	Open in IMG/M
3300005764\|Ga0066903_107288685	Not Available	572	Open in IMG/M
3300005833\|Ga0074472_10599132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7095	Open in IMG/M
3300005833\|Ga0074472_11408459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16018	Open in IMG/M
3300005937\|Ga0081455_10017410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6893	Open in IMG/M
3300005983\|Ga0081540_1068781	Not Available	1648	Open in IMG/M
3300005983\|Ga0081540_1086384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1393	Open in IMG/M
3300006034\|Ga0066656_10499494	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300006178\|Ga0075367_10112916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1669	Open in IMG/M
3300006755\|Ga0079222_10598987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	841	Open in IMG/M
3300006852\|Ga0075433_11208993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	656	Open in IMG/M
3300006903\|Ga0075426_10906599	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300006914\|Ga0075436_100338942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1082	Open in IMG/M
3300009012\|Ga0066710_101903811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	890	Open in IMG/M
3300009148\|Ga0105243_11914627	Not Available	626	Open in IMG/M
3300009792\|Ga0126374_10392393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	967	Open in IMG/M
3300009792\|Ga0126374_11108017	Not Available	628	Open in IMG/M
3300009814\|Ga0105082_1046590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	725	Open in IMG/M
3300009820\|Ga0105085_1110065	Not Available	545	Open in IMG/M
3300010043\|Ga0126380_10633236	Not Available	848	Open in IMG/M
3300010046\|Ga0126384_10003945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	9053	Open in IMG/M
3300010046\|Ga0126384_10195858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1595	Open in IMG/M
3300010046\|Ga0126384_10336720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1253	Open in IMG/M
3300010047\|Ga0126382_10027819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3056	Open in IMG/M
3300010047\|Ga0126382_10075343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2086	Open in IMG/M
3300010047\|Ga0126382_10869997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	776	Open in IMG/M
3300010047\|Ga0126382_10889171	All Organisms → cellular organisms → Bacteria → Proteobacteria	769	Open in IMG/M
3300010047\|Ga0126382_11690149	Not Available	591	Open in IMG/M
3300010358\|Ga0126370_12235420	Not Available	540	Open in IMG/M
3300010359\|Ga0126376_12147606	Not Available	603	Open in IMG/M
3300010359\|Ga0126376_12160344	Not Available	601	Open in IMG/M
3300010360\|Ga0126372_11920894	Not Available	637	Open in IMG/M
3300010360\|Ga0126372_12135603	Not Available	608	Open in IMG/M
3300010362\|Ga0126377_10031470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4487	Open in IMG/M
3300010362\|Ga0126377_10055325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3472	Open in IMG/M
3300010362\|Ga0126377_10273862	Not Available	1654	Open in IMG/M
3300010362\|Ga0126377_10446016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1315	Open in IMG/M
3300010362\|Ga0126377_10711299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1058	Open in IMG/M
3300010362\|Ga0126377_11526748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	742	Open in IMG/M
3300010362\|Ga0126377_11746002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	697	Open in IMG/M
3300010366\|Ga0126379_10236195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1788	Open in IMG/M
3300010366\|Ga0126379_10504369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1282	Open in IMG/M
3300010398\|Ga0126383_10877224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	983	Open in IMG/M
3300010398\|Ga0126383_12220847	Not Available	635	Open in IMG/M
3300010398\|Ga0126383_12320324	Not Available	622	Open in IMG/M
3300010401\|Ga0134121_11401419	Not Available	709	Open in IMG/M
3300010403\|Ga0134123_12773705	Not Available	558	Open in IMG/M
3300010857\|Ga0126354_1112805	Not Available	535	Open in IMG/M
3300010863\|Ga0124850_1147382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	535	Open in IMG/M
3300012212\|Ga0150985_110582802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	689	Open in IMG/M
3300012212\|Ga0150985_123155150	Not Available	608	Open in IMG/M
3300012349\|Ga0137387_10545060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	841	Open in IMG/M
3300012685\|Ga0137397_10011380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6200	Open in IMG/M
3300012922\|Ga0137394_10524504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1005	Open in IMG/M
3300012925\|Ga0137419_10548620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	923	Open in IMG/M
3300012929\|Ga0137404_10077743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2623	Open in IMG/M
3300012930\|Ga0137407_10300488	All Organisms → cellular organisms → Bacteria → Proteobacteria	1468	Open in IMG/M
3300012930\|Ga0137407_10418616	Not Available	1242	Open in IMG/M
3300012948\|Ga0126375_10226985	Not Available	1247	Open in IMG/M
3300012948\|Ga0126375_10609010	Not Available	835	Open in IMG/M
3300012948\|Ga0126375_11248155	Not Available	621	Open in IMG/M
3300017944\|Ga0187786_10241510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	710	Open in IMG/M
3300017947\|Ga0187785_10270924	Not Available	769	Open in IMG/M
3300018028\|Ga0184608_10003306	All Organisms → cellular organisms → Bacteria → Proteobacteria	4993	Open in IMG/M
3300018031\|Ga0184634_10377078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	650	Open in IMG/M
3300018075\|Ga0184632_10104843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1241	Open in IMG/M
3300018076\|Ga0184609_10326670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	717	Open in IMG/M
3300018078\|Ga0184612_10121708	Not Available	1366	Open in IMG/M
3300018078\|Ga0184612_10135223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1289	Open in IMG/M
3300018081\|Ga0184625_10626441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	524	Open in IMG/M
3300020170\|Ga0179594_10245442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	675	Open in IMG/M
3300021510\|Ga0222621_1096184	Not Available	628	Open in IMG/M
3300022756\|Ga0222622_10019789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3404	Open in IMG/M
3300022756\|Ga0222622_11455552	Not Available	504	Open in IMG/M
3300025941\|Ga0207711_11738330	Not Available	567	Open in IMG/M
3300026088\|Ga0207641_11026419	Not Available	822	Open in IMG/M
3300027384\|Ga0209854_1082619	Not Available	569	Open in IMG/M
3300027527\|Ga0209684_1036307	Not Available	755	Open in IMG/M
3300027735\|Ga0209261_10003391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4275	Open in IMG/M
3300027843\|Ga0209798_10547280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	522	Open in IMG/M
3300027874\|Ga0209465_10270536	Not Available	851	Open in IMG/M
3300027903\|Ga0209488_10017589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5190	Open in IMG/M
3300027907\|Ga0207428_10046006	All Organisms → cellular organisms → Bacteria → Proteobacteria	3511	Open in IMG/M
3300027949\|Ga0209860_1053327	Not Available	536	Open in IMG/M
3300028793\|Ga0307299_10181178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	793	Open in IMG/M
3300030988\|Ga0308183_1199881	Not Available	520	Open in IMG/M
3300031114\|Ga0308187_10086158	Not Available	948	Open in IMG/M
3300031114\|Ga0308187_10262451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	632	Open in IMG/M
3300031152\|Ga0307501_10178555	Not Available	594	Open in IMG/M
3300031184\|Ga0307499_10003931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3239	Open in IMG/M
3300031720\|Ga0307469_10706934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	914	Open in IMG/M
3300031720\|Ga0307469_11720525	Not Available	605	Open in IMG/M
3300031740\|Ga0307468_101141005	Not Available	698	Open in IMG/M
3300032174\|Ga0307470_10279882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1119	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.52%
Host-Associated	Host-Associated	11.48%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.59%
Aquatic	Environmental → Aquatic	13.93%
Plants	Host-Associated → Plants	11.48%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.59%
Sediment	Environmental → Aquatic → Sediment	9.84%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.92%
Freshwater	Environmental → Aquatic → Freshwater	4.10%
Roots	Host-Associated → Plants → Roots	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.72%
Loam	Environmental → Terrestrial → Soil → Loam	22.95%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.10%
Sand	Environmental → Terrestrial → Soil → Sand	3.28%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.28%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.64%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.82%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.16%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.92%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.10%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.28%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	3.28%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.28%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.46%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.46%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.64%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	25.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	18.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.38%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.92%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	4.10%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.28%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	3.28%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.28%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.46%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.46%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.46%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	1.64%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.64%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.64%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.82%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.82%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.82%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.82%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300004779	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh	Environmental	Open in IMG/M
3300004782	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental	Open in IMG/M
3300009820	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300010857	Boreal forest soil eukaryotic communities from Alaska, USA - W1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027384	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027735	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare1Fresh (SPAdes)	Environmental	Open in IMG/M
3300027843	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027949	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_40_50 (SPAdes)	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_112058571	3300000550	Soil	MGLLIAYIACLIVGQAFTIGIGLSIDRFYSAAISLPISLFLYFTMFWVAWKVAVRITEPKAENVSPPSGG*
C688J35102_1206578271	3300002568	Soil	MGLLVAYLVCLIVGQAITIGIGLSIDRYYSPTASLPISLFLYFAMFWVAWKVAVRITEPKTETTAPPSAG*
Ga0066398_100461222	3300004268	Tropical Forest Soil	MGLLVAYVICLVIGQTITVLVGLSVDRIYSPHVSLPISIVLYFAVFWVAWKIAVRVTEPKPRPASGSTIAPPR*
Ga0066395_101460902	3300004633	Tropical Forest Soil	MGLLVAYLICLIVGQSITIGIGLSIDRYYSATASLPISLFLYFAMFWLAWKVAVRITEPKAETTAPPSAS*
Ga0066395_107857081	3300004633	Tropical Forest Soil	MGLLVAYVICLVIGQTITVLVGLSVDRIYSPHVSLPISIVLYFAVFWVAWKIAIRVTEPKPRPASESTIAPPR*
Ga0062383_106760471	3300004778	Wetland Sediment	MGLLLAYLVCLIIGQGLTIAIGLSIDRYYSSAASLPISIFLYFLMFWVAWKVAVRLTEPK
Ga0062380_100811551	3300004779	Wetland Sediment	MGLLLAYLVCLIIGQGLTIAIGLSIDRYYSSAASLPISIFLYFLMFWVAWKVAVRLTEPKAQSPTAPQS*
Ga0062382_105275961	3300004782	Wetland Sediment	MGLLVAYLVCLIVGQGITIGIGLSIDRFYSSAASLPISIFLYFLMFWVAWKVAVRITEPKAQSPTAPQS*
Ga0066673_105542412	3300005175	Soil	MGLLVAYLVCLVIGQAITIGIGLSIDRFYSPTASLPISLILYFAMFWFAWKVAVRITEPKAETTTAPPSAG*
Ga0066388_1000292646	3300005332	Tropical Forest Soil	MGLLVAYIVCLIVGQAITIGIGLSIDWFYSPAISLPISLVLYFLMFGIAWKVAIRITEPKAERISPSSG*
Ga0066388_1001057883	3300005332	Tropical Forest Soil	MGLLVAYIICLVVGQSITIAIGLSIDWFYSPTISLPISLVLYFLMFGIAWKVAVRITEPKAERSTPPLG*
Ga0066388_1005466032	3300005332	Tropical Forest Soil	MGLLVAYVICLLIGQTVTIMVGLSIDRIYSPHVSLPISIALYFAVFWIAWKIAVRLTAPRTELKSAPVSESTVLPPPQAR*
Ga0066388_1013010992	3300005332	Tropical Forest Soil	MGLLVTYLVCLIVGQSITIGVGLSIDRYYSATASLPISLFMYFAMFWVAWKVAVRITEPKAETTAPPSAN*
Ga0066388_1023822402	3300005332	Tropical Forest Soil	MGLLVAYIVCLIVGQSITIAIGLSIDWFYSPTVSLPVSLVLYFLMFGIAWKVAVRITEPKAESSTPPV
Ga0066388_1025729321	3300005332	Tropical Forest Soil	MGLLVAYLICLIVGQSITIGIGLSIDRYYSATASLPISLFLYFAMFWLAWKVAVRITEPKAETTA
Ga0066388_1032590032	3300005332	Tropical Forest Soil	MGLLVAYIVCLIVGQAITIGIGLSIDWLYSPAISLPISLVLYFLMFGIAWKVAVRITEPKAETITPPLS*
Ga0066388_1056562871	3300005332	Tropical Forest Soil	MGLLMTYVICLIVGQAITIGIGLSIDWFYSPAISLPISLILYFLMFGIAWKVAVRITEPKAKRIILPLM*
Ga0070682_1013218501	3300005337	Corn Rhizosphere	MGLLVAYLVCLVVGQAITIGIGLSIDRYYPATVSLPISLFLYFTMFWVAWKIAVRITEPKTEAAAPPPTA*
Ga0070713_1013091841	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTLLIAYIVCLVIGQAITISLGLVLDRVWSPAVSLPISLALYFATFWICWKIAVRITEPKSTSPVTPAPPA*
Ga0070678_1020621661	3300005456	Miscanthus Rhizosphere	MGLLVAYLACLVVGQAITIGIGLSIDRYYPATVSLPISLFLYFTMFWVAWKIAVRITEPKTEAAAPPPTA*
Ga0066654_101557982	3300005587	Soil	MGLLVAYILCLIVGQAITIGIGLSIDRYYSPTTSLAISLFLYFAMFWLAWKVAVRITEPKADTTASPSAR*
Ga0066905_1000803002	3300005713	Tropical Forest Soil	MGLLVAYIICLIVGQSITIAIGLSIDWFYSPTISLPVSLVLYFLMFGIAWKVAVRITEPKAERSAPPLG*
Ga0066905_1002692602	3300005713	Tropical Forest Soil	MGLLVTYIACLIVGQALTITIGLSIDRFYSAAISLPISLFLYFTMFWVAWKVAVRLTEPKAENVSPPSGG*
Ga0066905_1007831002	3300005713	Tropical Forest Soil	MGLLVTYLICLIVGQSITIGIGLSIDRYYSPTASLPISLFLYFTMFWLAWKVAVRITEPKAETTAPPSGG*
Ga0066905_1011576931	3300005713	Tropical Forest Soil	HMGLLVAYIICLIVGQSITIGIGLSIDWFYSPTISLPISLVLYFLMFGIAWKVAVRITEPKAESSTPPVG*
Ga0066905_1014819242	3300005713	Tropical Forest Soil	MGLLIAYVICLVIGQTITVLVGLSVDRIYSPHVSLPISIVLYFAMFWIAWKIAIRVTEPKPRPASESTIAPPR*
Ga0066905_1021388492	3300005713	Tropical Forest Soil	MGLLIAYLIVLLIGQSITITIGLAIDRFYSPAISMPVSIALYFVMFWVAWKIAIRITEPRSAAAP*
Ga0066903_1024074282	3300005764	Tropical Forest Soil	MGLLVAYIICLIVGQSITIGIGLSIDWFYSPTISLPISLVLYFLMFGIAWKVAVRITEPKAERSTPPLG*
Ga0066903_1071810792	3300005764	Tropical Forest Soil	MGLLVAYVICLLVGQTITVLVGLSVDRIYSPHVSLPISIVLYFAVFWIAWKIAVRVTEPKSRPASESTIAPPR*
Ga0066903_1072886852	3300005764	Tropical Forest Soil	VTYLVCLIVGQAITIGIGLSIDRYYSASVSLPISLFLYFTMFWIAWKVAVRITEPKAETTPPPPAA*
Ga0074472_105991328	3300005833	Sediment (Intertidal)	MGLLVAYLICLVAGQAVTIMIGLSIDRFYSPTASLPISIFMYFLMFWVAWKIAVRITEPKAKSTTAPQS*
Ga0074472_1140845910	3300005833	Sediment (Intertidal)	MGLLLAYLVCLIVGQGITIGIGLSIDRYYSSAASLPISIFLYFLMFWVAWKVAVRITEPKAQSPTAPQS*
Ga0081455_100174105	3300005937	Tabebuia Heterophylla Rhizosphere	MGLLITYIACLIVGQALTITIGLSIDRFYSAAISLPISLFLYFTMFWVAWKVAVRLTEPKAENVSPPSGG*
Ga0081540_10687812	3300005983	Tabebuia Heterophylla Rhizosphere	MGLLLAYIACLLVGQSLTIGIGLSIDWFYSSAVSLPVSLVLYFLMFGIAWKVAVRITEPKAERTTPP*
Ga0081540_10863841	3300005983	Tabebuia Heterophylla Rhizosphere	MGLLVTYLACLIVGQAITIGIGLSIDRYYSASVSLPISLFMYFTMFWVAWKIAVRITEPKTETTAPPPAA*
Ga0066656_104994942	3300006034	Soil	MGLLIANIICLIVGQAITIGIGLSIDWFYSPAISLPISLVLYFLMFGIAWKVAVRITEPKTERTSPSLR*
Ga0075367_101129162	3300006178	Populus Endosphere	MGLLVTYLVCLIVGQSITIAIGLSIDRFYSSTASLPVSLFLYFTMFWVAWKVAVRITEPKAETTAPPPAA*
Ga0079222_105989872	3300006755	Agricultural Soil	MGLLVTYLVCLIVGQAITIGIGLSIDRYYSASVSLPISLFLYFTMFWVAWKIAVRITEPKAEATAPPPTA*
Ga0075433_112089932	3300006852	Populus Rhizosphere	LVTYLVCLIVGQAITIGIGLSIDRYYSASVSLPISLFLYFTMFWVAWKIAVRITEPKAEATAPPPTA*
Ga0075426_109065991	3300006903	Populus Rhizosphere	MGLLVTYLVCLIVCQSITIAIGLSIDRFYSSTASLPVSLFLYFTMFWVAWKVAVRITEPKAETTAPPPAA*
Ga0075436_1003389422	3300006914	Populus Rhizosphere	MGLLVTYLVCLIVGQAITIGIGLSIDRYYSPTASLPISLFLYFAMFWVAWKVAVRITEPKAETTAPPSVG*
Ga0066710_1019038112	3300009012	Grasslands Soil	MGLLVAYVVCLVVGQALTIGIGLSIDRFYSAAISLPISLVLYFVMFWVAWKVAVRITEPKAENVSPPSGG
Ga0105243_119146272	3300009148	Miscanthus Rhizosphere	VVGQAITIGIGLSIDRYYPATVSLPISLFLYFTMFWVAWKIAVRITEPKTEAAAPPPTA*
Ga0126374_103923931	3300009792	Tropical Forest Soil	MGLLVTYVICLIVGQAITIGIGLSVDRYYSPTASLPISLFLYFTMFWVAWKVAVRITEPKVETTAPPSAG*
Ga0126374_111080171	3300009792	Tropical Forest Soil	MSMPLLFTYIVCLIVGQAITIGIGLAIDWYYSPTVSLPVSLVLYFLMFGVAWKVAVHITEPKAERITPP*
Ga0105082_10465902	3300009814	Groundwater Sand	MGLVIAYVICLVIGQSITIGIGLAIDRMYSPAVSLPISIGLYFLMFWIAWKIAVRITEPRSAS*
Ga0105085_11100651	3300009820	Groundwater Sand	MGLLIAYLIILVIGQSITIAIGLAIDRFYSPAISMPVSIALYFVMFWVAWKIAIRVTEPRSASAP*
Ga0126380_106332361	3300010043	Tropical Forest Soil	MGLLVAYVICLVIGQTITVLVGLSVDRIYSPHVSLPISIVLYFAVFWVAWKIAVRVTEPKPRPASESTIAPPR*
Ga0126384_100039452	3300010046	Tropical Forest Soil	MGLLIAYVICLLIGQAITIMVGLSIDRMYSPHVSLPISIALYFAMFWIAWKIAVRLTEPKPLPASESQIAPPR*
Ga0126384_101958582	3300010046	Tropical Forest Soil	MGLLVAYLICLIVGQSITIGIGLSIDRYYSATASLPISLFLYFAMFWLAWKVAVRITEPKAETTAPPSAG*
Ga0126384_103367202	3300010046	Tropical Forest Soil	MGLLVTYVICLIVGQAITIGIGLSIDRYYSPTASLPISLFLYFTMFWVAWKVAVRITEPKVETTAPPSAG*
Ga0126382_100278194	3300010047	Tropical Forest Soil	LSLAALVSILIPQQCRDPTMGLLVAYIVCLIVGQAITIGIGLLIDWFYSPAISLPISLVLYFLMFGIAWKVAIRITEPKAEAITPPLR*
Ga0126382_100753432	3300010047	Tropical Forest Soil	MGLLVAYIVCLIVGQSITIGIGLSIDWFYSPTISLPISLVLYFLMFGIAWKVAVRITEPKAESSTPPVG*
Ga0126382_108699971	3300010047	Tropical Forest Soil	MGLVIAYIVILAIGQSITIGIGLAIDRIYSPSISLPVSIGLYFLMFWVAWKIAVRVTEPGPASAR
Ga0126382_108891712	3300010047	Tropical Forest Soil	MWDLTMGLLVTYIACLIVGQALTITIGLSIDRFYSAAISLPISLFLYFTMFWVAWKVAVRLTEPKAENVSPPSGG*
Ga0126382_116901491	3300010047	Tropical Forest Soil	MLIPAATWDLTMGLLVTYIACLVVGQALTIGIGLSIDRFYSSAISLPISLALYFLMFGIAWKVAVRITEPKVDKITPPPAG*
Ga0126370_122354201	3300010358	Tropical Forest Soil	MGLLVAYVLCLIVGQAFTIGIGLSIDRFYSPTASLPISLFLYFGMFWLAWRVAIRVTEPKVETTAPPPAS*
Ga0126376_121476061	3300010359	Tropical Forest Soil	MGLLVAYIVCLIVGQAITIGIGLSIDWFYSPAISLPISLVLYFLMFGIAWKVAIRITEPKAEAITPPLR*
Ga0126376_121603441	3300010359	Tropical Forest Soil	GLVIAYIVILAIGQSITIGIGLAIDRIYSPSISLPVSIGLYFLMFWVAWKIAVRVTEPGPASAR*
Ga0126372_119208942	3300010360	Tropical Forest Soil	MGLLVTYLVCLIVGQAITIGIGLSIDRYYSASVSLPISLFMYFTMFWVAWKIAVRITEPKAETSAPPPAA*
Ga0126372_121356031	3300010360	Tropical Forest Soil	MGLVIAYIIILAIGQSITIGIGLAIDRIYSPAISLPVSIGLYFLMFWIAWKIAVRVTEPGPASAR*
Ga0126377_100314703	3300010362	Tropical Forest Soil	MWDLTMGLLVTYIACLIVGQAITITIGLSIDRFYSAAISLPISLFLYFTMFWVAWKVAVRLTAPKAENVSPPSGG*
Ga0126377_100553252	3300010362	Tropical Forest Soil	MGLVIAYIVILAIGQSITIGIGLAIDRIYSPSISLPVSIGLYFLMFWVAWKIAVRVTEPGPASAR*
Ga0126377_102738622	3300010362	Tropical Forest Soil	MGLLVAYIVCLIVGQAITIGIGLSIDWFYSPAISLPISLVLYFLMFGIAWKMAVRLTEPKTEKISPSSGG*
Ga0126377_104460162	3300010362	Tropical Forest Soil	MGLLVAYIICLIIGQSITIAIGLSIDWFYSPTISLPVSLVLYFLMFGIAWKVAVRITEPKAERSAPPLG*
Ga0126377_107112992	3300010362	Tropical Forest Soil	MGLLIAYIICLVLGQTITVTIGLAVDRLYSPVASLPVSIALYFAMFWIAWKVAVRITEPKPASPPPPG*
Ga0126377_115267481	3300010362	Tropical Forest Soil	LASLVSILIPQQCRDPTMGLLVAYIVCLIVGQAITIGIGLSIDWFYSPAISLPISLVLYFLMFGIAWKVAVRITEPRAERITPPLT*
Ga0126377_117460022	3300010362	Tropical Forest Soil	REDLRMGLLVAYIVCLIVGQAITIGIGLSIDWFYSPAISLPISLVLYFLMFGIAWKVAIRITEPKAERISPSSG*
Ga0126379_102361952	3300010366	Tropical Forest Soil	MGLLVAYVICLLVGQTITVLVGLSVDRIYSPHVSLPISIVLYFAVFWVAWKIAIRVTEPKPRPASESTIAPPR*
Ga0126379_105043691	3300010366	Tropical Forest Soil	MGLLMTYVICLIVGQAITIGIGLSIEWFYSPAISLPISLALYFLMFGIAWKVAVRITEPRAERITPPLT*
Ga0126383_108772242	3300010398	Tropical Forest Soil	MGLLVTYLVCLIVGQAITIGIGLSIDRYYSPTASLPISLFLYFTMFWVAWKVAVRITEPKVETTAPPSAG*
Ga0126383_122208472	3300010398	Tropical Forest Soil	MTYVICLIVGQAITIGIGLSIEWFYSPAISLPISLALYFLMFGIAWKVAVRITEPRAERITPPLR*
Ga0126383_123203241	3300010398	Tropical Forest Soil	LASLVSILIPQQCRDPTMGLLVAYIVCLIVGQAITIGIGLLIDWFYSPAISLPISLVLYFLMFGIAWKVAIRITEPKAEAITPPLR*
Ga0134121_114014191	3300010401	Terrestrial Soil	MTLLIAYILCLIVGQSITIGIGVMIDRWHSSTLSLPISIALYFTMFWVCWKIAVRITEPRVKPEQPAPPV*
Ga0134123_127737052	3300010403	Terrestrial Soil	MVLLVTYVVCLLIGQTITITLGLAIDRMYSPGVSLPISIALYFIMFWIAWKVAVRITEPKAEAQSKALPPSG*
Ga0126354_11128052	3300010857	Boreal Forest Soil	MGLLIAYVVCLFVGQSITIAVGIAIDRFYSPAVSLPIAIGLYFLMFWLCWLLAVRLTEPKVAPATPSMRSEPPKN*
Ga0124850_11473821	3300010863	Tropical Forest Soil	MGLLVAYVICLLIGQTVTIMVGLSIDRIYSPHVSLPISIALYFAFAVFWIAWKIAVRLTAPRTELKSAPVSESTVLPPPQ
Ga0150985_1105828021	3300012212	Avena Fatua Rhizosphere	MGLLVAYLACLIVGQAITIAIGLSIDRFYSPTASLPISLLLYFAMFWMAWKVAVRITEPKAETTAPPSAG*
Ga0150985_1231551502	3300012212	Avena Fatua Rhizosphere	LLVTYLVCLIIGQAITITIGLSIDRYYSAAVSLPVSLFMYFTMFWVAWKLAVRITEPKTEIPAPPSDR*
Ga0137387_105450602	3300012349	Vadose Zone Soil	MGLLVAYLACLIVGQAITIGIGLSIDRFYSPTASLPISLFLYFAMFWLAWRVAVRITEPK
Ga0137397_100113806	3300012685	Vadose Zone Soil	MGLLLAYIVCLVIGQTITIGIGLSIDRFYSPTASLPISLILYFAMFWLAWKVAVRITEPKAETKAPPSVG*
Ga0137394_105245041	3300012922	Vadose Zone Soil	MGLLLAYIVCLVIGQTITIGIGLSIDRFYSPTASLPISLILYFAMFWLAWKVAVRITEPKAETKAPPSAG*
Ga0137419_105486202	3300012925	Vadose Zone Soil	MGLLVTYLVCLIVGQAITIGIGLSIDRFYSPTASLPISLFLYFAMFWLAWRVAVRITEPKAETRAPPSAG*
Ga0137404_100777433	3300012929	Vadose Zone Soil	MGLLVAYLACLVIGQAITIGIGLSIDRFYSPTASLPISLILYFAMFWLAWKVAVRITEPKAETRAPPSAG*
Ga0137407_103004882	3300012930	Vadose Zone Soil	LSFPSLVPILIPQQCGDMTMGLLVAYIVCLVIGQAMTIGIGLSIDRFYSSAVSLPVSLALYFLMFGIAWKVAVRITEPKADKITPPPVG*
Ga0137407_104186162	3300012930	Vadose Zone Soil	MGLLATYLACLIVGQAITIGIGLSIDRFYSPTASLPISLFLYFAMFWLAWRVAVRITEPKAETRAPPSAG*
Ga0126375_102269852	3300012948	Tropical Forest Soil	MGLLVAYIVCLIVGQSITIGIGLSIDWFYSPTISLPISLVLYFLMFGIAWKVAVRITEPK
Ga0126375_106090102	3300012948	Tropical Forest Soil	LSLPALASILIPQQCRDLTMGLLVAYIVCLIVGQAITIGIGLSIDWFYSPAISLPISLVLYFLMFGIAWKVAIRITEPKAETITPPLR*
Ga0126375_112481551	3300012948	Tropical Forest Soil	MGLLVTYLICLIVGQSITIGIGLSIDRYYSATVSLPISLFLYFTMFWVAGKVAVRITEPKAEATAPPPAA*
Ga0187786_102415102	3300017944	Tropical Peatland	HMGLLVAYLVCLILGQAITIGIGLSIDRYYSSSVSLPVSLFLYFAMFWVAWKVAVRITEPKAETTPPPPAA
Ga0187785_102709242	3300017947	Tropical Peatland	MGLLVAYLVCLIVGQAITIGIGLSIDRYYSSSVSLPVSLFLYFAMFWVAWKVAVRVTEPKAETTPPPPAA
Ga0184608_100033065	3300018028	Groundwater Sediment	MGLLVAYIACLIVGQAITIGIGLSIDRFYSPTASLPISLILYFAMFWMAWKVAVRITEPKAETRAPPSAG
Ga0184634_103770781	3300018031	Groundwater Sediment	MGLLVAYIACLIVGQAITIGIGLSIDRFYSPTASLPISLILYFAMFWMAWKVAVRITEPKAETPPSAG
Ga0184632_101048432	3300018075	Groundwater Sediment	MGLLVAYIACLLVGQSITIAIGLSVVRFYSPVASLPISIFLYFAMFWIAWKVAVRLTEPKTQSTPQS
Ga0184609_103266701	3300018076	Groundwater Sediment	MGLLVAYIACLLVGQSITIAIGLSVDRFYSPVASLPISIFLYFAMFWIAWKVAVRITEPRTQSTPQS
Ga0184612_101217082	3300018078	Groundwater Sediment	MGLLVAYIACLLVGQSITIAIGLSVDRFYSPVASLPISIFLYFAMFWIAWKVAVRVTEPKTQSTSAPQS
Ga0184612_101352232	3300018078	Groundwater Sediment	MGLVIAYVICLVIGQSITIGIGLAIDRMYSPAVSLPISIGLYFLMFWIAWKIAVRITEPRSASAS
Ga0184625_106264412	3300018081	Groundwater Sediment	MGLLVAYIACLIVGQAITIGIGLSIDRFYSPTASLPISLILYFAMFWMAWKVAVRITEPKAETRA
Ga0179594_102454421	3300020170	Vadose Zone Soil	GDRDQKCGSDAMGLLATYVACLIVGQAITIGIGLSIDRFYSPTASLPISLFLYFAMFWLAWRVAVRITEPKAETRAPPSAG
Ga0222621_10961842	3300021510	Groundwater Sediment	LVCLVIGQAITITIGLSIDRYYSPTASLPISLFLYFAMFWLAWKVAVRITEPKAERTAPPSAG
Ga0222622_100197892	3300022756	Groundwater Sediment	MGLLVAYIACLIVGQAITIGIGLSIDRFYSPTASLPISLFLYFAMFWLAWKVAVRITEPKAERTAPPSAG
Ga0222622_114555521	3300022756	Groundwater Sediment	MGLLVAYLVCLIVGQAITIGIGLSIDRYYSPTASLPISLFLYFAMFWVAWKVAVRITEPKAETSAPPSAG
Ga0207711_117383302	3300025941	Switchgrass Rhizosphere	CLVVGQAITIGIGLSIDRYYPATVSLPISLFLYFTMFWVAWKIAVRITEPKTEAAAPPPT
Ga0207641_110264192	3300026088	Switchgrass Rhizosphere	MGLLVAYLVCLVVGQAITIGIGLSIDRYYPATVSLPISLFLYFTMFWVAWKIAVRITEPKTEAAAPPPTA
Ga0209854_10826191	3300027384	Groundwater Sand	MSLLIAYVICLLIGQSITIAVGLTIDRMYSPAVSLPVSIALYFVMFWVTWKLAVRITEPKSVPHSTGSPPG
Ga0209684_10363072	3300027527	Tropical Forest Soil	MGLLVAYVICLVIGQTITVLVGLSVDRIYSPHVSLPISIVLYFAVFWVAWKIAIRVTEPKPRPASESTIAPPR
Ga0209261_100033913	3300027735	Wetland Sediment	MGLLLAYLVCLIIGQGLTIAIGLSIDRYYSSAASLPISIFLYFLMFWVAWKVAVRLTEPKAQSPTAPQS
Ga0209798_105472802	3300027843	Wetland Sediment	MGLLVAYLVCLIVGQGITIGIGLSIDRFYSSAASLPISIFLYFLMFWVAWKVAVRITEPKAQSPTAPQS
Ga0209465_102705361	3300027874	Tropical Forest Soil	MGLLVAYVICLVIGQTITVLVGLSVDRIYSPHVSLPISIVLYFAVFWVAWKIAIRVTEPKPRPASES
Ga0209488_100175895	3300027903	Vadose Zone Soil	MGLLATYLACLIVGQAITIGIGLSIDRFYSPTASLPISLFLYFAMFWLAWRVAVRITEPKAETRAPPSAG
Ga0207428_100460064	3300027907	Populus Rhizosphere	MGLLVTYLVCLIVGQSITIAIGLSIDRFYSSTASLPVSLFLYFTMFWVAWKVAVRITEPKAETTAPPPAA
Ga0209860_10533272	3300027949	Groundwater Sand	MGLVIAYVICLVIGQSITIGIGLAIDRMYSPAVSLPISIGLYFLMFWIAWKIAVRITEPRSAS
Ga0307299_101811782	3300028793	Soil	MGLLVAYIACLIVGQAITIGIGLSIDRFYSPTASLPISLILYFAMFWMAWKVAVRITEPKAPP
Ga0308183_11998811	3300030988	Soil	DTMGLLVAYLVCLIVGQAITIGIGLSIDRYYSPTASLPISLFLYFAMFWVAWKVAVRITEPKAETTAPPSAG
Ga0308187_100861582	3300031114	Soil	YIACLIVGQAITIGIGLSIDRFYSPTASLPISLILYFAMFWMAWKVAVRITEPKAETGAPPSAG
Ga0308187_102624512	3300031114	Soil	VCLIVGQAITIGIGLSIDRYYSPTASLPISLFLYFAMFWVAWKVAVRITEPKAETTAPPSAG
Ga0307501_101785552	3300031152	Soil	MGLLLAYLVCLVIGQSITIGIGLSIDRFYSPTASLPISLILYFAMFWMAWKVAVRITEPKADTRAPPSAG
Ga0307499_100039311	3300031184	Soil	MGLLVAYLVCLIVGQAITIGIGLSIDRYYSSTVSLPISLFLYFTMFWVAWKVAVRITEPKAEETAPPPAA
Ga0307469_107069341	3300031720	Hardwood Forest Soil	MSLLVAYIACLLVGQTITITVGLSIDRFYSPAISLPVSLFLYFTMFWVAWKVAVRLTEPKAENVSPPSGG
Ga0307469_117205251	3300031720	Hardwood Forest Soil	MGLLVAYLVCLIVGQAITIGIGLSIDRYYSSTVSLPVSLFLYFTMFWVAWKVAVRITEPKAEATTPPPAA
Ga0307468_1011410051	3300031740	Hardwood Forest Soil	MGLLVTYLVCLILGQAITIAVGLSIDRYYSPTVSLPISLFMYFTMFWVAWKIAVRITEPKAETTAPPPAA
Ga0307470_102798821	3300032174	Hardwood Forest Soil	AAKCGSDTMGLLVAYLVCLIVGQAITIGIGLSIDRYYSSTVSLPVSLFLYFTMFWVAWKVAVRITEPKAEATTPPPAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071417

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences