Metagenome / Metatranscriptome Family F071384

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071384
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	77 residues
Representative Sequence	MTPNDRTEQLLNEILETQRAHLEEYKRVTSESLRLQRQAVEAQHRYIRLLRPMLIVGAVVVAGLIVYVLWLSRFIR
Number of Associated Samples	102
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	38.52 %
% of genes near scaffold ends (potentially truncated)	22.95 %
% of genes from short scaffolds (< 2000 bps)	92.62 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (69.672 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil (17.213 % of family members)
Environment Ontology (ENVO)	Unclassified (41.803 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.738 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 70.19% β-sheet: 0.00% Coil/Unstructured: 29.81%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF00583	Acetyltransf_1	6.56
PF01381	HTH_3	4.92
PF02798	GST_N	4.10
PF04657	DMT_YdcZ	3.28
PF13561	adh_short_C2	2.46
PF13231	PMT_2	2.46
PF07366	SnoaL	1.64
PF13417	GST_N_3	1.64
PF00082	Peptidase_S8	1.64
PF14279	HNH_5	1.64
PF00903	Glyoxalase	1.64
PF04392	ABC_sub_bind	1.64
PF00561	Abhydrolase_1	0.82
PF13365	Trypsin_2	0.82
PF13492	GAF_3	0.82
PF01370	Epimerase	0.82
PF01548	DEDD_Tnp_IS110	0.82
PF07883	Cupin_2	0.82
PF03053	Corona_NS3b	0.82
PF02321	OEP	0.82
PF13460	NAD_binding_10	0.82
PF00563	EAL	0.82
PF08818	DUF1801	0.82
PF01209	Ubie_methyltran	0.82
PF02601	Exonuc_VII_L	0.82
PF13792	Obsolete Pfam Family	0.82
PF12695	Abhydrolase_5	0.82
PF13489	Methyltransf_23	0.82
PF05016	ParE_toxin	0.82
PF13410	GST_C_2	0.82
PF00497	SBP_bac_3	0.82
PF04365	BrnT_toxin	0.82
PF03401	TctC	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG3238	Uncharacterized membrane protein YdcZ, DUF606 family	Function unknown [S]	3.28
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.64
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.64
COG1570	Exonuclease VII, large subunit	Replication, recombination and repair [L]	0.82
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.82
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.82
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	0.82
COG2929	Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin system	Defense mechanisms [V]	0.82
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.82
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.82
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.82
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.82
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.82
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.82
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.82
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.67 %
Unclassified	root	N/A	30.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.67 %
Unclassified	root	N/A	30.33 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.67 %
Unclassified	root	N/A	30.33 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	31.97 %
Unclassified	root	N/A	30.33 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	5.74 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	3.28 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.46 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.33 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7.38 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	5.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5.74 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.64 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1.64 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.64 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.82 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.82 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.82 %
Armatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.33 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	5.74 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3.28 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	2.46 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1.64 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	1.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.82 %
Armatimonadia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia	0.82 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.82 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.82 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.33 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.46 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	2.46 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.64 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	1.64 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.82 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.82 %
Armatimonadales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Armatimonadales	0.82 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	0.82 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.82 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.33 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.46 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.46 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	1.64 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.64 %
Pseudorivibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Pseudorivibacter	0.82 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.82 %
Armatimonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Armatimonadales → Armatimonadaceae	0.82 %
Nostocaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae	0.82 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.82 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.33 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.46 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.46 %
unclassified Planctomycetaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae	1.64 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.64 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	0.82 %
Pseudorivibacter rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Pseudorivibacter → Pseudorivibacter rhizosphaerae	0.82 %
Armatimonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Armatimonadales → Armatimonadaceae → Armatimonas	0.82 %
Nostoc	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Nostoc	0.82 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.82 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.33 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.46 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.46 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1.64 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.64 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	0.82 %
Armatimonas rosea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Armatimonadales → Armatimonadaceae → Armatimonas → Armatimonas rosea	0.82 %
Pseudorivibacter rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Pseudorivibacter → Pseudorivibacter rhizosphaerae	0.82 %
Nostoc	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Nostoc	0.82 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.82 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886011\|MRS1b_contig_8410773	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1328	Open in IMG/M
2162886013\|SwBSRL2_contig_12744129	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	946	Open in IMG/M
3300000956\|JGI10216J12902_102678364	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300000956\|JGI10216J12902_108456397	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300004009\|Ga0055437_10031558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1323	Open in IMG/M
3300004157\|Ga0062590_100615618	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300004463\|Ga0063356_100264226	All Organisms → cellular organisms → Bacteria	2098	Open in IMG/M
3300004463\|Ga0063356_100534186	All Organisms → cellular organisms → Bacteria	1563	Open in IMG/M
3300004463\|Ga0063356_101022437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1182	Open in IMG/M
3300004463\|Ga0063356_101237337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1087	Open in IMG/M
3300004463\|Ga0063356_101698677	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	944	Open in IMG/M
3300004463\|Ga0063356_103277369	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300004463\|Ga0063356_105414842	Not Available	548	Open in IMG/M
3300004463\|Ga0063356_105645418	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300004480\|Ga0062592_100129176	All Organisms → cellular organisms → Bacteria	1642	Open in IMG/M
3300004480\|Ga0062592_102040187	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300005206\|Ga0068995_10012686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1198	Open in IMG/M
3300005218\|Ga0068996_10204532	Not Available	512	Open in IMG/M
3300005290\|Ga0065712_10076245	All Organisms → cellular organisms → Bacteria	3703	Open in IMG/M
3300005294\|Ga0065705_10151038	All Organisms → cellular organisms → Bacteria	1939	Open in IMG/M
3300005294\|Ga0065705_10839146	Not Available	594	Open in IMG/M
3300005340\|Ga0070689_100731362	All Organisms → cellular organisms → Bacteria → Proteobacteria	866	Open in IMG/M
3300005340\|Ga0070689_101182640	Not Available	686	Open in IMG/M
3300005353\|Ga0070669_101988153	Not Available	508	Open in IMG/M
3300005355\|Ga0070671_100539600	Not Available	1005	Open in IMG/M
3300005438\|Ga0070701_11214512	Not Available	535	Open in IMG/M
3300005444\|Ga0070694_101190908	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300005445\|Ga0070708_101918019	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300005455\|Ga0070663_101844302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Pseudorivibacter → Pseudorivibacter rhizosphaerae	542	Open in IMG/M
3300005459\|Ga0068867_101861797	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300005467\|Ga0070706_101895279	All Organisms → cellular organisms → Bacteria → Proteobacteria	541	Open in IMG/M
3300005471\|Ga0070698_102059623	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300005471\|Ga0070698_102215209	Not Available	503	Open in IMG/M
3300005545\|Ga0070695_100421282	All Organisms → cellular organisms → Bacteria → Proteobacteria	1016	Open in IMG/M
3300005549\|Ga0070704_100116222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2045	Open in IMG/M
3300005719\|Ga0068861_100716783	All Organisms → cellular organisms → Bacteria → Proteobacteria	931	Open in IMG/M
3300005829\|Ga0074479_10250591	Not Available	698	Open in IMG/M
3300006041\|Ga0075023_100466148	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300006046\|Ga0066652_101110932	All Organisms → cellular organisms → Bacteria → Proteobacteria	749	Open in IMG/M
3300006196\|Ga0075422_10422968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Nostocaceae → Nostoc	593	Open in IMG/M
3300006845\|Ga0075421_100611893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1278	Open in IMG/M
3300006846\|Ga0075430_100081254	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2715	Open in IMG/M
3300006847\|Ga0075431_100032795	All Organisms → cellular organisms → Bacteria → Proteobacteria	5353	Open in IMG/M
3300006854\|Ga0075425_100293471	Not Available	1871	Open in IMG/M
3300006854\|Ga0075425_100363005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1667	Open in IMG/M
3300006871\|Ga0075434_100208355	All Organisms → cellular organisms → Bacteria → Proteobacteria	1976	Open in IMG/M
3300006876\|Ga0079217_11765170	Not Available	500	Open in IMG/M
3300006881\|Ga0068865_100314285	All Organisms → cellular organisms → Bacteria → Proteobacteria	1258	Open in IMG/M
3300007255\|Ga0099791_10466897	Not Available	611	Open in IMG/M
3300009094\|Ga0111539_11606114	All Organisms → cellular organisms → Bacteria → Proteobacteria	754	Open in IMG/M
3300009100\|Ga0075418_10777333	All Organisms → cellular organisms → Bacteria → Proteobacteria	1034	Open in IMG/M
3300009148\|Ga0105243_10969611	All Organisms → cellular organisms → Bacteria	851	Open in IMG/M
3300009162\|Ga0075423_11581497	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300009176\|Ga0105242_12587487	Not Available	556	Open in IMG/M
3300009177\|Ga0105248_10542701	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1312	Open in IMG/M
3300009609\|Ga0105347_1349102	Not Available	630	Open in IMG/M
3300009610\|Ga0105340_1123058	All Organisms → cellular organisms → Bacteria	1055	Open in IMG/M
3300009610\|Ga0105340_1240151	Not Available	774	Open in IMG/M
3300009678\|Ga0105252_10076989	Not Available	1305	Open in IMG/M
3300010403\|Ga0134123_10085476	All Organisms → cellular organisms → Bacteria	2471	Open in IMG/M
3300010403\|Ga0134123_12046149	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300011409\|Ga0137323_1076224	Not Available	739	Open in IMG/M
3300011409\|Ga0137323_1136910	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300011415\|Ga0137325_1090062	Not Available	689	Open in IMG/M
3300011428\|Ga0137456_1037420	All Organisms → cellular organisms → Bacteria → Proteobacteria	1114	Open in IMG/M
3300011433\|Ga0137443_1076148	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	943	Open in IMG/M
3300011438\|Ga0137451_1138314	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300011443\|Ga0137457_1020622	All Organisms → cellular organisms → Bacteria → Proteobacteria	1722	Open in IMG/M
3300011445\|Ga0137427_10077536	Not Available	1329	Open in IMG/M
3300012038\|Ga0137431_1127595	Not Available	721	Open in IMG/M
3300012113\|Ga0137328_1004144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1082	Open in IMG/M
3300012159\|Ga0137344_1024184	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	998	Open in IMG/M
3300012166\|Ga0137350_1110491	Not Available	557	Open in IMG/M
3300012171\|Ga0137342_1012692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1446	Open in IMG/M
3300012200\|Ga0137382_10883728	Not Available	644	Open in IMG/M
3300012208\|Ga0137376_11552455	Not Available	553	Open in IMG/M
3300012231\|Ga0137465_1054881	All Organisms → cellular organisms → Bacteria → Proteobacteria	1181	Open in IMG/M
3300012901\|Ga0157288_10280489	All Organisms → cellular organisms → Bacteria → Proteobacteria	574	Open in IMG/M
3300012902\|Ga0157291_10187128	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300012989\|Ga0164305_10171520	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1496	Open in IMG/M
3300013296\|Ga0157374_10506935	Not Available	1212	Open in IMG/M
3300013308\|Ga0157375_12188558	Not Available	659	Open in IMG/M
3300013760\|Ga0120188_1033466	Not Available	600	Open in IMG/M
3300014318\|Ga0075351_1199834	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300014745\|Ga0157377_10653511	Not Available	757	Open in IMG/M
3300014867\|Ga0180076_1001367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3343	Open in IMG/M
3300014968\|Ga0157379_10978915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	806	Open in IMG/M
3300014969\|Ga0157376_10338420	All Organisms → cellular organisms → Bacteria → Proteobacteria	1436	Open in IMG/M
3300015371\|Ga0132258_13796257	Not Available	1029	Open in IMG/M
3300015372\|Ga0132256_102011521	Not Available	684	Open in IMG/M
3300015372\|Ga0132256_103361333	Not Available	538	Open in IMG/M
3300018083\|Ga0184628_10460928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	661	Open in IMG/M
3300019238\|Ga0180112_1085089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1023	Open in IMG/M
3300019361\|Ga0173482_10329228	Not Available	684	Open in IMG/M
3300019362\|Ga0173479_10249806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	780	Open in IMG/M
3300019377\|Ga0190264_10168547	All Organisms → cellular organisms → Bacteria	1159	Open in IMG/M
3300021090\|Ga0210377_10332941	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	920	Open in IMG/M
3300021363\|Ga0193699_10015437	All Organisms → cellular organisms → Bacteria → Proteobacteria	2759	Open in IMG/M
3300025921\|Ga0207652_11064341	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	709	Open in IMG/M
3300025922\|Ga0207646_10171721	All Organisms → cellular organisms → Bacteria	1958	Open in IMG/M
3300025926\|Ga0207659_10607924	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	932	Open in IMG/M
3300025938\|Ga0207704_10858614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	761	Open in IMG/M
3300025941\|Ga0207711_11491985	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300025961\|Ga0207712_10510108	All Organisms → cellular organisms → Bacteria	1029	Open in IMG/M
3300025972\|Ga0207668_11430744	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300026121\|Ga0207683_10101458	All Organisms → cellular organisms → Bacteria → Acidobacteria	2569	Open in IMG/M
3300027395\|Ga0209996_1010432	All Organisms → cellular organisms → Bacteria → Proteobacteria	1233	Open in IMG/M
3300027573\|Ga0208454_1032833	Not Available	1214	Open in IMG/M
3300027573\|Ga0208454_1100002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	677	Open in IMG/M
3300027614\|Ga0209970_1075388	Not Available	630	Open in IMG/M
3300027717\|Ga0209998_10207236	Not Available	513	Open in IMG/M
3300027907\|Ga0207428_10885297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Armatimonadales → Armatimonadaceae → Armatimonas → Armatimonas rosea	631	Open in IMG/M
3300027910\|Ga0209583_10599053	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300028380\|Ga0268265_11080077	Not Available	796	Open in IMG/M
3300028381\|Ga0268264_10451418	All Organisms → cellular organisms → Bacteria → Proteobacteria	1245	Open in IMG/M
3300028592\|Ga0247822_10270325	All Organisms → cellular organisms → Bacteria → Proteobacteria	1291	Open in IMG/M
3300028802\|Ga0307503_10781526	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	543	Open in IMG/M
3300028812\|Ga0247825_10463561	All Organisms → cellular organisms → Bacteria → Proteobacteria	899	Open in IMG/M
3300028812\|Ga0247825_10837837	Not Available	665	Open in IMG/M
3300032157\|Ga0315912_10228898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1460	Open in IMG/M
3300032157\|Ga0315912_10326330	All Organisms → cellular organisms → Bacteria → Proteobacteria	1211	Open in IMG/M
3300033551\|Ga0247830_11237092	Not Available	596	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	59.84%
Host-Associated	Host-Associated	40.16%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	40.16%
Terrestrial	Environmental → Terrestrial	35.25%
Aquatic	Environmental → Aquatic	24.59%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	35.25%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.95%
Sediment	Environmental → Aquatic → Sediment	20.49%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.21%
Marine	Environmental → Aquatic → Marine	2.46%
Freshwater	Environmental → Aquatic → Freshwater	1.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	24.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	20.49%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.21%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.93%
Loam	Environmental → Terrestrial → Soil → Loam	9.84%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.74%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.46%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.64%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.82%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	20.49%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.21%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.74%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.28%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.28%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.46%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.46%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.64%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	17.21%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	9.02%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.20%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.28%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.28%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.46%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.46%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.46%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.46%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.46%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.46%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.46%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.64%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.64%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.64%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.64%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.64%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.82%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.82%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.82%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886011	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004009	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005206	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D2	Environmental	Open in IMG/M
3300005218	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011409	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT423_2	Environmental	Open in IMG/M
3300011415	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT469_2	Environmental	Open in IMG/M
3300011428	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT615_2	Environmental	Open in IMG/M
3300011433	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT300_2	Environmental	Open in IMG/M
3300011438	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2	Environmental	Open in IMG/M
3300011443	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012038	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT800_2	Environmental	Open in IMG/M
3300012113	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT100_2	Environmental	Open in IMG/M
3300012159	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT500_2	Environmental	Open in IMG/M
3300012166	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT660_2	Environmental	Open in IMG/M
3300012171	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT466_2	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012231	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT828_2	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300013760	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C3.rep2	Environmental	Open in IMG/M
3300014318	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rd	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014867	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT433_16_10D	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300019238	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT466_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027395	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027573	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)	Environmental	Open in IMG/M
3300027614	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
MRS1b_0702.00002570	2162886011	Miscanthus Rhizosphere	RTEQLLNEILQTQRAHLEEYKRVTMESLRLQRQAVEAQGRYIHLLRPALVVGAVVIAGLIVYVLWLSRFVR
SwBSRL2_0384.00005650	2162886013	Switchgrass Rhizosphere	MTQNDRTEQLLTEILQVQRSQLDEYKRVTSESLQLQRRAVDAQIRYLRLLRPMLIVGAAVVAGLVVYV
JGI10216J12902_1026783643	3300000956	Soil	MTENDRTEKLLGEILETQRAHLEEYKRVTTESLRLQRQAVEAQIRYIRLLRPMLIVGGVVIAGLIVYVLWLSRFIR*
JGI10216J12902_1084563971	3300000956	Soil	MADNDRNEQLLKEILETQRAHLEEYKRVTAESLRLQRQAVEAQGRYIRLLRPMLIIGAVVIAGLIVYVLWLSRFVR*
Ga0055437_100315581	3300004009	Natural And Restored Wetlands	MSDDNRTNKLLTEILETQRAHLDEYKRVTSESLRLQRQSVESQTRYIRLLRPMLIVGAVVIAGLLAYVLWLSRLIR*
Ga0062590_1006156182	3300004157	Soil	MADNDRTEQLLNEILQTERAHLEEYKRVTAESLRLQRQAVEAQGRYIHLLRPALIVGAVVVAGLIVYVLWLSRFIR*
Ga0063356_1002642262	3300004463	Arabidopsis Thaliana Rhizosphere	MTDRTDQLLNEILETERAHLEEYKRVTAESLRLQRQAVEAQLRYIRLLRPMLIVGAAVIAGLIVYVLWLSRLIR*
Ga0063356_1005341862	3300004463	Arabidopsis Thaliana Rhizosphere	MTQNDRTEQLLAEILEVQRAHLEEYKRVTSESLQLQRRATDAQLRYIRLLRPMLIVGSIVMAGLIVYVLWLSRLIR*
Ga0063356_1010224373	3300004463	Arabidopsis Thaliana Rhizosphere	MAQNDRTEQLLAEILEVQRAHLEEYKRVTSESLQLQRRATDAQVRYIRLLRPMLIVGSIVMAGLIVYVLWLSRLIR*
Ga0063356_1012373372	3300004463	Arabidopsis Thaliana Rhizosphere	MADNDRNEQLLKEILETQRAHLEEYKRVTAESLRLQRQAVEAQGRYLRLLRPMLIAGAVVVAGLIVYVLWLSRFIR*
Ga0063356_1016986772	3300004463	Arabidopsis Thaliana Rhizosphere	MTPSDRIEQLLTEILEVQRSQLDEYKRVTSESLQLQRRAADAQLRYIRLLRPMLVVGAVVVSGLIVYILWLSRYLR*
Ga0063356_1032773692	3300004463	Arabidopsis Thaliana Rhizosphere	MTQNDRTEQLLTEILEVQRSQLDEYKRVTSESLQLQRRAVEAQVRYIPLLRPMLIVGSVVVAGLIVYVLWLSRFIR*
Ga0063356_1054148422	3300004463	Arabidopsis Thaliana Rhizosphere	LDRWRAMAQNDRTEQLLSKILETQRAHLEEYKQVTSESLRLQRQAVDAQVRYIRLLRPMLVVGAVVIAGLIVYVLWLSRVIA*
Ga0063356_1056454182	3300004463	Arabidopsis Thaliana Rhizosphere	MTQSNRTEQLLAEILEVQRAQLVEYKRVTSESLQLQRRAVDAQIRYIRLLRPMLIAGAVVVAGLLAYVLWLSRFIR*
Ga0062592_1001291761	3300004480	Soil	MADNDRTEQLLNEILQTERAHLEEYKRVTAESLRLQRQAVEAQGRYIHLLRPALIVGVVVVAGLIVYVLWLSRFIR*
Ga0062592_1020401871	3300004480	Soil	MTNDDRIEQLLTEILEVQRSQLDEYKRVTSESLQLQRRAVDAQLRYIRLLRPMLIVGSVVVAGLIVYILWLSRFIR*
Ga0068995_100126861	3300005206	Natural And Restored Wetlands	YWLRIGGTHSSIHAVHFTLARATLMSDDNRTNKLLTEILETQRAHLDEYKRVTSESLRLQRQSVESQTRYIRLLRPMLIVGAVVIAGLLAYVLWLSRLIR*
Ga0068996_102045321	3300005218	Natural And Restored Wetlands	MFARSTLMSDDNRTNKLLTEILETQRAHLDEYKRVTSESLRLQRQSVESQTRYIRLLRPMLIVGAVVIAGLLAYVLWLSRLIR*
Ga0065712_100762453	3300005290	Miscanthus Rhizosphere	MADTSRTEQLLNEILQTQRAHLEEYKRVTMESLRLQRQAVEAQGRYIHLLRPALVVGAVVIAGLIVYVLWLSRFVR*
Ga0065705_101510383	3300005294	Switchgrass Rhizosphere	MTQNDRTEQLLTEILQVQRSQLDEYKRVTSESLQLQRRAVDAQIRYLRLLRPMLIVGAAVVAGLVVYVLWLSRFIR*
Ga0065705_108391461	3300005294	Switchgrass Rhizosphere	MTPNDRTEQLLNEILETQRAHLEEYKRVTAESLRLQRQAVESQLRYIRLLRPMLIVGAVVVGGLIVYVLWLSRFIR*
Ga0070689_1007313622	3300005340	Switchgrass Rhizosphere	MEPNDRTELLLNEILETQRAHLEEYKRVTAESLRLQRQSVEAQVRYIRLLRPMLIVGAVVIAGLIVYVLWLSRFVR*
Ga0070689_1011826401	3300005340	Switchgrass Rhizosphere	MTPNDRTEQLLNEILETQRAHLEEYKRVTSESLRLQRQAVEAQHRYIRLLRPMLIVGAVVVAGLIVYVLWLSRFIR*
Ga0070669_1019881531	3300005353	Switchgrass Rhizosphere	MADTSRTEQLLNEILQTQRAHLEEYKRMTMESLRLQRQAVEAQGRYIHLLRPALVVGAVVIAGLIVYVLWLSRFVR*
Ga0070671_1005396002	3300005355	Switchgrass Rhizosphere	MADTSRTEQLLNEILQTQRAHLDEYKRVTMESLRLQRQAVEAQGRYIHLLRPALMVGAVVVAGLIVYVLWLSRFVR*
Ga0070701_112145122	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MADNDCTEQLLNEILQTERAHLEEYKRVTAESLRLQRQAVEAQGRYIHLLRPALIVGAVVVAGLIVYVLWLSRFIR*
Ga0070694_1011909082	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MTPNDRTEQLLNEILETQRAHLEEYKRVTSESLRLQRQAVEAQHRYIRLLRPMLIVGAVVVAGLIVYILWLSRFIR
Ga0070708_1019180192	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTQNDRTEQLLAEILEVQRAQLDEYKRVTSESLQLQRRAVDAQLRYLRLLRPMLIAGAVVVAGLIVYVLWLSRFIR*
Ga0070663_1018443021	3300005455	Corn Rhizosphere	MAPNDRTEQLLNEILETQRTHLEEYKRVTAESLRLQRQSVEAQVRYIRLLRPMLIVGAVVIAGLIVYVLWLSRFVR*
Ga0068867_1018617971	3300005459	Miscanthus Rhizosphere	MTPNDRTEQLLNEILETQRAHLEEYKRVTSESLRLQRQAVEAQHRYIRLLRPMLIVGAVVVAGLI
Ga0070706_1018952792	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTPNDRTEQLLNEILETQRAHLEEYKRVTAESLRLQRQAVESQLRYIRLLRPMLIAGAVVVGGLIVYVLWLSRFIR*
Ga0070698_1020596231	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MTQDDRSAQLLAEILEVQRAQLDEYKRVTSESLQLQRRAVDAQIRYIRLLRPMLIAGAVVVVGLIAYVLWLSRFIR*
Ga0070698_1022152092	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MTNNDRIEQLLTEILEVQCSQLDEYKRVTSESLQLQRRAVDAQLRYIRLLRPMLIVGSVVVAGLIVYILWLSRFIR*
Ga0070695_1004212821	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MEPNDRTEQMLNEILETQRAHLEEYKRVTAESLRLQRQAVESQLRYIRLLRPMLIVGAVVVGGLIVYVLWLSRFIR*
Ga0070704_1001162224	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MTPNDRTEQLLNEILETQRAHLEEYKRVTAESLRLQRQAVESQLRYIQLLRPMLIVGAVVVGGLIVYVLWLSRFIR*
Ga0068861_1007167832	3300005719	Switchgrass Rhizosphere	MEPNDRTEQMLNEILETQRAHLEEYKRVTAESLRLQRQSVEAQVRYIRLLRPMLIVGAVVIAGLIVYVLWLSRFVR*
Ga0074479_102505912	3300005829	Sediment (Intertidal)	MTQNDRTEQLLTEILEVQRAQLEEYKRVTSESLQLQRRAVDAQVRYIRLLRPMLIVGSVVIAGLIVYVLWLSRLIR*
Ga0075023_1004661481	3300006041	Watersheds	MLAKSGLRQHNHGFQGDAKLMTQNDRTEQLLREILEVQRAQLDEYKRVTAESLQLQRRAVDAQVRYIRLLRPTLIVGSVVIAGLIVYVLWLSRLIR*
Ga0066652_1011109322	3300006046	Soil	MTPNDRTEQLLKEILETQRAHLEEYKRVTAESLRLQRQAVDAQHRYIRLLRPMLIAGAVVVAGLIVYILWLSRFIR*
Ga0075422_104229681	3300006196	Populus Rhizosphere	MTPNDRTEQLLNEILETQRAHLEEYRRVTAESLRLQRQAVESQLRYIRLLRPMLIVGAVVVGGLIVYVLWLSRFIR*
Ga0075421_1006118932	3300006845	Populus Rhizosphere	MAQNDRTEQLLSKILETQRAHLEEYKQVTSESLRLQRQAVDAQVRYIRLLRPMLIVGAVVIAGLIVYVLWLSRVIA*
Ga0075430_1000812542	3300006846	Populus Rhizosphere	MAQNDRTEQLLSKILETQRAHLEEYKQVTSESLRLQRQAVDAQVRYIRLLRPMLVVGAVVIAGLIVYVLWLSRVIA*
Ga0075431_1000327954	3300006847	Populus Rhizosphere	MTQNDRTEQLLAEILEVQRAHLEEYKRVTSESLQLQRRATDAQLRYIRLLRPMLIVGSIVMAGLIVYVLWLSRFIR*
Ga0075425_1002934712	3300006854	Populus Rhizosphere	MADTSRTEQLLNEILATQRAHLEEYKRVTMESLRLQRQAVEAQGRYIHLLRPALIVGAVVIAGLIVYVLWLSRFVR*
Ga0075425_1003630052	3300006854	Populus Rhizosphere	MPENDRTEALLTEILETQRAHLDEYKKVTSESLRLQRQAVEAQLRYIRLLRPMLIVGAVVIAGLIAYILWLSRFVR*
Ga0075434_1002083551	3300006871	Populus Rhizosphere	MADTSRTEQLLNEILTTQRAHLEEYQRVTMESLRLQRQAVEAQGRYIHLLRPALIVGAVVIAGLIVYVLWLSRFVR*
Ga0079217_117651702	3300006876	Agricultural Soil	MTPNDRTEQLLTEILEVQRSQLDEYKRVTSESLQLQRRAVEAQLRYIRLLRPMLIVGAVVVAGLIVYVLWLSRFIR*
Ga0068865_1003142851	3300006881	Miscanthus Rhizosphere	MAPNDRTEQLLNEILETQRTHLEEYKRVTAESLRLQRQSVEAQVRYIRLLRPMLIVGAVVIAGLI
Ga0099791_104668972	3300007255	Vadose Zone Soil	MTQDDRAEQLLTEILEVQRSHLEEYKRVTSESLQLQRRAVDTQIRYIRLLRPMLIVGAVVVAGLIVYLLWLSRYVR*
Ga0111539_116061142	3300009094	Populus Rhizosphere	MTPNDRTEQLLNEILETQRAHLEEYRRVTAESLRLQRQAVEAQHRYIRLLRPMLIVGAVVVGGLIVYILWLSRFIR*
Ga0075418_107773332	3300009100	Populus Rhizosphere	MRRGKTRTLDRWRAMAQNDRTEQLLSKILETQRAHLEEYKQVTSESLRLQRQAVDAQVRYIRLLRPMLVVGAVVIAGLIVYVLWLSRVIA*
Ga0105243_109696113	3300009148	Miscanthus Rhizosphere	MADTSRTEQLLNEILQTQRAHLEEYKRVTMESLRLQRQAVEAQGRYIHLLRPALIVGAVVVAGLIVYVLWLSRFIR*
Ga0075423_115814971	3300009162	Populus Rhizosphere	MTNNDRAEQLLPQILEVQRSQLDEYKRVASESLHLQRRAADAQLRYIRLLRPMLLVGAVVVSGLIVYILWLSRYLR*
Ga0105242_125874872	3300009176	Miscanthus Rhizosphere	MADNGRTEQLLNEILETQRAHLEEYKRVTAESLRLQRQAVEAQGRYIHLLRPALIVGAVVVAGLIVYVLWLSRFIR*
Ga0105248_105427012	3300009177	Switchgrass Rhizosphere	MADTSRTEQLLNEILQTQRAHLEEYKRVTMESLRLQRQSVEAQGRYIHLLRPALVVGAVVIAGLIVYVLWLSRFVR*
Ga0105347_13491022	3300009609	Soil	MSQDDKTERLLTEILEVQRAHLDEYKRVTSQSLQLQRQSVEAQGRYIGLLRPMLIVGAVVIAGLIAYVLWLSRYVR*
Ga0105340_11230581	3300009610	Soil	MTQNERTEQLLAEILEVQRAQLEEYKRVTSESLQLQRRAVDTQVRYIRFLRPMLIAFSVVIGGLIVYVLWLSRFV
Ga0105340_12401512	3300009610	Soil	MSQDDKTERLLAEILEVQRAHLDEYKRVTAQSLQLQRQAVEAQGRYIRLLRPMLIVGGVVIAGLIVYVLWLSRYVR*
Ga0105252_100769892	3300009678	Soil	MTQNDRTEQLLTEILEVQRAQLDEYKRVTSESLQLQRRAVDAQVRYIRLLRPMLIVGSVVIAGLIVYVLWLSRLIR*
Ga0134123_100854763	3300010403	Terrestrial Soil	MTPNDRTEQLLNEILETQRAHLEEYKRVTSESLRLQRQAVEAQHRYIRLLRPMLIVGAVVVAGLIVYILWLSRFIR*
Ga0134123_120461491	3300010403	Terrestrial Soil	MEPNDRTELLLNEILETQRAHLEEYKRVTAESLRLQRQSVEAQVRYIRLLRPMLIVGAVVIAGLIVYVLWLSRF
Ga0137323_10762242	3300011409	Soil	MSQDDKTERLLTEILEVQRAHLDEYKRVTSQSLQLQRQSVEAQGRYIGLHRPMLIVGAVVIAGLIAYVLWLSRYVR*
Ga0137323_11369102	3300011409	Soil	MEPDDRTEQLLNEILETQRAHLEEYKRVTAESLRLQRQAVEAQARYIRLLRPMLIVGAVVIAGLIAYVLWLSRFIR*
Ga0137325_10900622	3300011415	Soil	MSQDDKTERLLTEILEVQRAHLDEYKRVTSQSLQLQRQSVEAQGRYIGLLRPMLIVGAVVIAGLIAYVLWLSRY
Ga0137456_10374201	3300011428	Soil	RTEQLLTEILEVQRAQLDEYKRVTSESLQLQRRAVDAQVRYIRLLRPMLIVGSVVIAGLIVYVLWLSRLIR*
Ga0137443_10761482	3300011433	Soil	MTQNERTEQLLAEILEVQRAHLEEYKRVTSESLQLQRRAVDTQVRYIRFLRPMLIAFSVVIGGLIVYVLWLSRFVR*
Ga0137451_11383142	3300011438	Soil	TEQLLEQILEVQRAQMEEYKRVTSQSLELQRRAVDAQTRYLRMLRPLLVVGGVVMAGLIVYVLWLSRYVR*
Ga0137457_10206223	3300011443	Soil	MKPDDRTEQLLNEILETQRAHLEEYKRVTAESLRLQRQAVEAQARYIRLLRPTLIVGAVVIAGLIAYVLWLSRFIR*
Ga0137427_100775363	3300011445	Soil	MRRGKTRTLDRAAAMPENDRTEKLLTEILETQRAHLEEYKKVTSESLRLQRQAVEAQLRYIRLLRPMLIVGAVVIAGLIAYVLWLSRFIR*
Ga0137431_11275951	3300012038	Soil	MTQNDRTEQLLTEILEVQRAQLDEYKRVTSESLQLQRRAVDAQVRYIRLLRPMLIVGSVVMAGLIVYVLWLSRLIR*
Ga0137328_10041441	3300012113	Soil	VQNPVGARGLLGTLDRAKVMTQNDRTEQLLTEILEVQRAQLDEYKRVTSESLQLQRRAVDAQVRYIRLLRPMLIVGSVVIAGLIVYVLWLSRLIR*
Ga0137344_10241843	3300012159	Soil	MTQNERAEQLLAEILEVQRAHLEEYKRVTSESLQLQRRAVDTQVRYIRFLRPMLIAFSVVIGGLIVYVLWLSRFVR*
Ga0137350_11104912	3300012166	Soil	MTQNDRTEQLLTEILEVQRAHLEEYKRVTSESLQLQRRAVDAQIGYLRLLRPMLIVGAVVVAGLIVYVLWLSRFVR*
Ga0137342_10126923	3300012171	Soil	MTQNDRTEELLTEILEVQRAQLDEYKRVTSESLQLQRRAVDAQVRYIRLLRPMLIVGSVVIAGLIVYVLWLSRLIR*
Ga0137382_108837282	3300012200	Vadose Zone Soil	MADNGRTEQLLNEILETERAHLEEYKRVTTESLRLQRQAVEAQGRYIHLLRPMLIVDAVIIAGIIVYVLWLSRFVR*
Ga0137376_115524551	3300012208	Vadose Zone Soil	NEILETERAHLEEYKRVTTESLRLQRQAVEAQGRYIHLLRPMLIVGAVIIAGIIVYVLWLSRFVR*
Ga0137465_10548811	3300012231	Soil	LDRAKVMTQNDRTEQLLTEILEVQRAQLDEYKRVTSESLQLQRRAVDAQVRYIRLLRPMLIVGSVVIAGLIVYVLWLSRLIR*
Ga0157288_102804892	3300012901	Soil	MEPNDRTELLLNEILETQRAHLEEYKRVTAESLRLQRQSVEAQVRYIRLLRPMLIVGAVVIAELIVYVLWLSRFVR*
Ga0157291_101871281	3300012902	Soil	ADRIEQLLTEILEVQRSQLDEYKRVTSESLQLQRRAVDAQLRYIRLLRPMLIVGSVVVAGLIVYILWLSRFIR*
Ga0164305_101715201	3300012989	Soil	MADNSRIEQLLNEILQTERAHLEEYKRVTMESLRLQRQAVEAQGRYIHLLRPALIVGAVVVAGLIVYVLWLSRFVR*
Ga0157374_105069351	3300013296	Miscanthus Rhizosphere	MADTSRTEQLLNEILQTQRAHLEEYKRVTMESLRLQRQAVEAQGRYIHLLRPALVVGAGVIAGLI
Ga0157375_121885581	3300013308	Miscanthus Rhizosphere	LLNEILQTQRAHLEEYKRVTMESLRLQRQAVDAQGRYIHLLRPALVVGAVVIAGLIVYVLWLSRFVR*
Ga0120188_10334661	3300013760	Terrestrial	MAQNDRTEQLLSKILETQRAHLEEYKQVTSESLRLQRQAVDAQVRYIRLLRPMLIVGAMVIAGLIVYVLWLSRVIA*
Ga0075351_11998342	3300014318	Natural And Restored Wetlands	MTQNDRTKQLLAEILEVQRAQLDEYKRVTSESLQLQRRAVDAQVRYIRLLRPMLIVGSIVVAGLIVYVLWLSRFIR*
Ga0157377_106535111	3300014745	Miscanthus Rhizosphere	MTPNDRTEQLLNEILETQRAHLEEYKRVTSESLRLQRQAVEAQHRYIRLLRPMLVVGAVVVAGLIVYILWLSRFIR*
Ga0180076_10013676	3300014867	Soil	MTQNDRTEELLTEILEVQRAQLNEYKRVTSESLQLQRRAVDAQVRYIRLLRPMLIVGSVVIAGLIVYVLWLSRLIR*
Ga0157379_109789152	3300014968	Switchgrass Rhizosphere	EPNDRTELLLNEILETQRAHLEEYKRVTAESLRLQRQSVEAQVRYIRLLRPMLIVGAVVIAGLIVYVLWLSRFVR*
Ga0157376_103384202	3300014969	Miscanthus Rhizosphere	MEPNDRTELLLNEILETQRAHLEEYKRVTAESLRLQRQSVEAQVLYIRLLRPMLIVGAVVIAGLIVYVLWLSRFVR*
Ga0132258_137962572	3300015371	Arabidopsis Rhizosphere	MADTSRTEQLLNEILQTQRAHLDEYKRVTMESLRLQRQAVEAQGRYIHLLRPALMVGAVVIAGLIVYVLWLSRFVR*
Ga0132256_1020115211	3300015372	Arabidopsis Rhizosphere	MADTGRTEQLLNEILQTQRAHLDEYKRVTMESLRLQRQAVEAQGRYIHLLRPALMVGAVVIAGLIVYVLWLSRFVR*
Ga0132256_1033613331	3300015372	Arabidopsis Rhizosphere	MADNGRTEQLLNDLLETQRAHLEEYKRVTAESLRLQRQAVEAQVRYIHLLRPALIVGAVIIAGLIVYVLWLSRFIR*
Ga0184628_104609283	3300018083	Groundwater Sediment	RVARKMTQNDRTEQLLEQILEVQRAQLEEYKRVTSQSLELQRRAVDAQTRYLRVLRPTIFVGAVVAAGLIVYVLWLSRYVR
Ga0180112_10850891	3300019238	Groundwater Sediment	LLTEILEVQRAQLDEYKRVTSESLQLQRRAVDAQVRYIRLLRPMLIVGSVVIAGLIVYVLWLSRLIR
Ga0173482_103292283	3300019361	Soil	MADNDRTEQLLNEILQTERAHLEEYKRVTAESLRLQRQAVEAQGRYIHLLRPALIVGAVVVAGLIVYVLWLSRFIR
Ga0173479_102498061	3300019362	Soil	MTPNDRTEQLLNEILETQRAHLEEYKRVTAESLRLQRQSVEAQVRYIRLLRPMLIVGAVVIAGLIVYVLWLSRFVR
Ga0190264_101685471	3300019377	Soil	IATPRAPVSVDVRPHGLMAQNDRTEQLLNEILETQRAHLEEYKRVTAESLRLQRQGIEAQTRYIRLLRPMLIVGAVVIAGLIVYVIWLSRAIR
Ga0210377_103329413	3300021090	Groundwater Sediment	MTQNDRTEQLLEQILEVQRAQLEEYKRVTSQSLELQRRAVDAQTRYLRMLRPLLVVGGVVMAGLIVYVLWLSRYVR
Ga0193699_100154374	3300021363	Soil	MTQNDRTEQLLTEILEVQRAQLDEYKRVTSESLQLQRRAVDAQIRYIRLLRPMLIVGSVVISGLIVYVLWLSRLIR
Ga0207652_110643411	3300025921	Corn Rhizosphere	MADNDRTEQLLNEILQTERAHLEEYKRVTAESLRLQRQAVEAQGCYIHLLRPALIVGAVVVAGLIVYVLWLSRFIR
Ga0207646_101717213	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MTQNDRTEQLLTEILQVQRSQLDEYKRVTSESLQLQRRAVDAQIRYLRLLRPMLIVGAAVVAGLVVYVLWLSRFIR
Ga0207659_106079241	3300025926	Miscanthus Rhizosphere	MADTSRTEQLLNEILQTQRAHLEEYKRVTMESLRLQRQAVEAQGRYIHLLRPALVVGAVVIAGLIVYVLWLSRFVR
Ga0207704_108586142	3300025938	Miscanthus Rhizosphere	MAPNDRTEQLLNEILETQRTHLEEYKRVTAESLRLQRQSVEAQVRYIRLLRPMLIVGAVVIAGLIVYVLWLSRFVR
Ga0207711_114919851	3300025941	Switchgrass Rhizosphere	MEPNDRTELLLNEILETQRAHLEEYKRVTAESLRLQRQSVEAQVRYIRLLRPMLIVGAVVIAGLIVYV
Ga0207712_105101083	3300025961	Switchgrass Rhizosphere	MADNDRTEQLLNEILQTERAHLEEYKRVTAESLRLQRQAVEAQGRYIHLLRPALIVGAVVVAGLIVYVLWLSRFVR
Ga0207668_114307441	3300025972	Switchgrass Rhizosphere	MEPNDRTELLLNEILETQRAHLEEYKRVTAESLRLQRQSVEAQVRYIRLLRPMLIVGAVVIAGLIVYVLW
Ga0207683_101014581	3300026121	Miscanthus Rhizosphere	MAPNDRTEQLLNEILETQRTHLEEYKRVTAESLRLQRQSVEAQVRYIRLLRPMLIVGAVVIAGLIVY
Ga0209996_10104322	3300027395	Arabidopsis Thaliana Rhizosphere	MAQNDRTEQLLSKILETQRAHLEEYKQVTSESLRLQRQAVDAQVRYIRLLRPMLVVGAVVIAGLIVYVLWLSRVIA
Ga0208454_10328332	3300027573	Soil	MTQNDRTEQLLTEILEVQRAQLDEYKRVTSESLQLQRRAVDAQVRYIRLLRPMLIVGSVVIAGLIVYVLWLSRLIR
Ga0208454_11000022	3300027573	Soil	MPDNDRTEKLLTEILETQRAHLDEYKRVTSESLRLQRQSVEAQTRYIRLLRPMLIVGAVVIAGLLAYVLWLSRLIR
Ga0209970_10753881	3300027614	Arabidopsis Thaliana Rhizosphere	MAQNDRTEQLLSKILETQRAHLEEYKQVTSESLRLQRQAVDAQVRYIRLLRPMLVVGAVVIAGLIVYVLWLSRVI
Ga0209998_102072361	3300027717	Arabidopsis Thaliana Rhizosphere	MPLPARGSPFHSLDRWRAMAQNDRTEQLLSKILETQRAHLEEYKQVTSESLRLQRQAVDAQVRYIRLLRPMLVVGAVVIAGLIVYVLWLSRVIA
Ga0207428_108852971	3300027907	Populus Rhizosphere	MTPNDRTEQLLNEILETQRAHLEEYKRVTAESLRLQRQAVESQLRYIRLLRPMLIVGAVVVGGLIVYVLWLSRFIR
Ga0209583_105990531	3300027910	Watersheds	MLAKSGLRQHNHGFQGDAKLMTQNDRTEQLLREILEVQRAQLDEYKRVTAESLQLQRRAVDAQVRYIRLLRPTLIVGSVVIAGLIVYVLWLSRLIR
Ga0268265_110800772	3300028380	Switchgrass Rhizosphere	MTPNDRTEQLLNEILQTQRAHLEEYKRVTAESLRLQRQAVEAQHRYIRLLRPMLVVGAVVVAGLIVYILWLSRFIR
Ga0268264_104514183	3300028381	Switchgrass Rhizosphere	MEPNDRTELLLNEILETQRAHLEEYKRVTAESLRLQRQSVEAQVRYIRLLRPMLIVGAVVIAGLIVYVLWLSRFVR
Ga0247822_102703252	3300028592	Soil	MTTNDRSEQLLNEILETQRAHLEEYKRVTSESLRLQRQAVEAQIRYIRLLRPMLIVGGAVIAGLIVYVLWLSRFIR
Ga0307503_107815261	3300028802	Soil	LESNKTEQLLEQILEVERAHLAEYKRVTSESLDLQRRAVNSQLGYLRILKPALLIGAIAIAALIVYILWLSRYVR
Ga0247825_104635612	3300028812	Soil	MTTNDRSEQLLNEILETQRAHLEEYKRVTSESLRLQRQAVEAQIRYIRLLRPMLIVGGVVIAGLIVYVLWLSRFIR
Ga0247825_108378371	3300028812	Soil	MADNGRNEQLLNEILETQRAHLEEYKRVTSESLRLQRQAVEAQVRYMRLLRPLLIVGAVVMAGLIVYVLWLSRFVR
Ga0315912_102288982	3300032157	Soil	MSDDNRTNKLLTEILETQRAHLDEYKRVTSESLRLQRQSVESQTRYIRLLRPMLIVGAVVIAGLLAYVLWLSRLIR
Ga0315912_103263302	3300032157	Soil	VSDSDRTEKLLTEILETQRAHLDEYRKVTSESLRLQRQSVEAQARYIRLLRPMLIAGAVVVAGLLVYVLWLSRFIR
Ga0247830_112370922	3300033551	Soil	HAVDRRLQLAALRMRRGKTRTLDRWRAMAQNDRTEQLLSKILETQRAHLEEYKQVTSESLRLQRQAVDAQVRYIRLLRPMLVVGAVVIAGLIVYVLWLSRVIA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071384

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences