Metagenome Family F071381

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071381
Family Type	Metagenome
Number of Sequences	122
Average Sequence Length	50 residues
Representative Sequence	FLVTLVGSCLYPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL
Number of Associated Samples	106
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.83 %
% of genes near scaffold ends (potentially truncated)	97.54 %
% of genes from short scaffolds (< 2000 bps)	95.90 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.443 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.672 % of family members)
Environment Ontology (ENVO)	Unclassified (41.803 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (57.377 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 85.71% β-sheet: 0.00% Coil/Unstructured: 14.29%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF13787	HXXEE	54.92
PF00144	Beta-lactamase	5.74
PF08334	T2SSG	0.82
PF08309	LVIVD	0.82
PF12833	HTH_18	0.82
PF00440	TetR_N	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	5.74
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	5.74
COG2367	Beta-lactamase class A	Defense mechanisms [V]	5.74
COG5276	Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain	Function unknown [S]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.44 %
Unclassified	root	N/A	6.56 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.44 %
Unclassified	root	N/A	6.56 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.44 %
Unclassified	root	N/A	6.56 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	40.16 %
Unclassified	root	N/A	6.56 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.46 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.82 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	38.52 %
Unclassified	root	N/A	6.56 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.82 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.82 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.82 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.82 %

Name	Rank	Taxonomy	Distribution
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	38.52 %
Unclassified	root	N/A	6.56 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.82 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.82 %

Name	Rank	Taxonomy	Distribution
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	38.52 %
Unclassified	root	N/A	6.56 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.82 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.82 %

Name	Rank	Taxonomy	Distribution
Lysobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter	38.52 %
Unclassified	root	N/A	6.56 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.82 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.82 %

Name	Rank	Taxonomy	Distribution
unclassified Lysobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter	38.52 %
Unclassified	root	N/A	6.56 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.82 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.82 %

Name	Rank	Taxonomy	Distribution
Lysobacter sp. S4-A87	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	38.52 %
Unclassified	root	N/A	6.56 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.82 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.82 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005288\|Ga0065714_10531310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	507	Open in IMG/M
3300005294\|Ga0065705_10399722	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300005328\|Ga0070676_10321315	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300005335\|Ga0070666_11241100	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300005340\|Ga0070689_100838027	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300005340\|Ga0070689_101639552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	584	Open in IMG/M
3300005344\|Ga0070661_100522579	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300005345\|Ga0070692_11167854	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300005354\|Ga0070675_100595139	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300005355\|Ga0070671_101599680	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300005356\|Ga0070674_100139021	All Organisms → cellular organisms → Bacteria	1820	Open in IMG/M
3300005356\|Ga0070674_101549166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	597	Open in IMG/M
3300005439\|Ga0070711_101617584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	567	Open in IMG/M
3300005455\|Ga0070663_100722115	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300005456\|Ga0070678_101600697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	612	Open in IMG/M
3300005459\|Ga0068867_100973553	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300005459\|Ga0068867_102353084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	507	Open in IMG/M
3300005466\|Ga0070685_10991796	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300005548\|Ga0070665_101370182	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300005616\|Ga0068852_101833913	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	629	Open in IMG/M
3300005617\|Ga0068859_102396420	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300005618\|Ga0068864_102697440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	503	Open in IMG/M
3300005840\|Ga0068870_10410493	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300005841\|Ga0068863_100460341	All Organisms → cellular organisms → Bacteria	1249	Open in IMG/M
3300005841\|Ga0068863_101986785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	591	Open in IMG/M
3300005842\|Ga0068858_100868016	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300005843\|Ga0068860_101459286	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300005844\|Ga0068862_100435769	All Organisms → cellular organisms → Bacteria	1233	Open in IMG/M
3300006049\|Ga0075417_10503800	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300006196\|Ga0075422_10561411	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300006847\|Ga0075431_101252089	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300006853\|Ga0075420_100385470	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300006881\|Ga0068865_101456699	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300006881\|Ga0068865_102018787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	523	Open in IMG/M
3300007076\|Ga0075435_101174259	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300009036\|Ga0105244_10256992	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300009094\|Ga0111539_12116794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	653	Open in IMG/M
3300009101\|Ga0105247_11680440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	524	Open in IMG/M
3300009148\|Ga0105243_11730512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	655	Open in IMG/M
3300009156\|Ga0111538_12703539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	622	Open in IMG/M
3300009177\|Ga0105248_11785040	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300009610\|Ga0105340_1211072	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300010400\|Ga0134122_12039691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	613	Open in IMG/M
3300011435\|Ga0137426_1190902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	610	Open in IMG/M
3300012476\|Ga0157344_1005738	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300012484\|Ga0157333_1032794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	526	Open in IMG/M
3300012487\|Ga0157321_1038907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	516	Open in IMG/M
3300012488\|Ga0157343_1008759	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300012501\|Ga0157351_1023242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	673	Open in IMG/M
3300012502\|Ga0157347_1044337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	596	Open in IMG/M
3300012514\|Ga0157330_1019622	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300012672\|Ga0137317_1011088	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300012882\|Ga0157304_1025875	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300012884\|Ga0157300_1036914	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300012891\|Ga0157305_10070265	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300012891\|Ga0157305_10102810	All Organisms → cellular organisms → Bacteria → FCB group	707	Open in IMG/M
3300012896\|Ga0157303_10154525	Not Available	619	Open in IMG/M
3300012899\|Ga0157299_10130252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	688	Open in IMG/M
3300012903\|Ga0157289_10109072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	803	Open in IMG/M
3300012907\|Ga0157283_10405615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	508	Open in IMG/M
3300012910\|Ga0157308_10133550	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300012958\|Ga0164299_11230087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	568	Open in IMG/M
3300012958\|Ga0164299_11510700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	524	Open in IMG/M
3300012961\|Ga0164302_11534793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	551	Open in IMG/M
3300012961\|Ga0164302_11613770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	540	Open in IMG/M
3300012984\|Ga0164309_11522398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	572	Open in IMG/M
3300012986\|Ga0164304_10791003	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300012987\|Ga0164307_11403824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	588	Open in IMG/M
3300012987\|Ga0164307_11916222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	502	Open in IMG/M
3300013096\|Ga0157307_1145570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	546	Open in IMG/M
3300013296\|Ga0157374_11484162	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300013306\|Ga0163162_12145794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	641	Open in IMG/M
3300014867\|Ga0180076_1071294	Not Available	638	Open in IMG/M
3300014880\|Ga0180082_1115297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	614	Open in IMG/M
3300014969\|Ga0157376_12015499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	615	Open in IMG/M
3300015373\|Ga0132257_100046203	All Organisms → cellular organisms → Bacteria	4832	Open in IMG/M
3300017965\|Ga0190266_10559276	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	682	Open in IMG/M
3300018051\|Ga0184620_10113819	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300018067\|Ga0184611_1347705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	509	Open in IMG/M
3300018074\|Ga0184640_10390422	Not Available	628	Open in IMG/M
3300018083\|Ga0184628_10052392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2061	Open in IMG/M
3300018083\|Ga0184628_10183798	Not Available	1092	Open in IMG/M
3300018469\|Ga0190270_12233504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	608	Open in IMG/M
3300018481\|Ga0190271_13087087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	559	Open in IMG/M
3300019356\|Ga0173481_10178445	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300022756\|Ga0222622_10547064	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300022756\|Ga0222622_10670287	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300023260\|Ga0247798_1059908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	536	Open in IMG/M
3300023270\|Ga0247784_1053530	Not Available	990	Open in IMG/M
3300025315\|Ga0207697_10240053	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300025893\|Ga0207682_10156573	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300025906\|Ga0207699_11172005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	569	Open in IMG/M
3300025926\|Ga0207659_11083795	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300025926\|Ga0207659_11311108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	621	Open in IMG/M
3300025926\|Ga0207659_11924645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	501	Open in IMG/M
3300025931\|Ga0207644_11471628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	572	Open in IMG/M
3300025937\|Ga0207669_10321497	All Organisms → cellular organisms → Bacteria	1184	Open in IMG/M
3300026023\|Ga0207677_10653217	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300026075\|Ga0207708_10617194	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300026121\|Ga0207683_11238305	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300027533\|Ga0208185_1012976	All Organisms → cellular organisms → Bacteria	2083	Open in IMG/M
3300027543\|Ga0209999_1106790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	546	Open in IMG/M
3300027573\|Ga0208454_1083824	Not Available	743	Open in IMG/M
3300028380\|Ga0268265_10442922	All Organisms → cellular organisms → Bacteria → Proteobacteria	1211	Open in IMG/M
3300028380\|Ga0268265_12219371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	556	Open in IMG/M
3300028587\|Ga0247828_10674559	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300028592\|Ga0247822_10842395	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300031562\|Ga0310886_10090662	All Organisms → cellular organisms → Bacteria	1499	Open in IMG/M
3300031562\|Ga0310886_10181845	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300031573\|Ga0310915_10087518	All Organisms → cellular organisms → Bacteria → Acidobacteria	2083	Open in IMG/M
3300031858\|Ga0310892_10465872	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300031908\|Ga0310900_10542795	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300031913\|Ga0310891_10062917	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M
3300032000\|Ga0310903_10576089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	596	Open in IMG/M
3300032003\|Ga0310897_10435214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	626	Open in IMG/M
3300032075\|Ga0310890_11130584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	635	Open in IMG/M
3300033551\|Ga0247830_11475044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Lysobacter → unclassified Lysobacter → Lysobacter sp. S4-A87	544	Open in IMG/M
3300034147\|Ga0364925_0189440	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300034147\|Ga0364925_0191783	Not Available	750	Open in IMG/M
3300034149\|Ga0364929_0031374	All Organisms → cellular organisms → Bacteria	1574	Open in IMG/M
3300034894\|Ga0373916_0019512	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	53.28%
Host-Associated	Host-Associated	45.90%
Engineered	Engineered	0.82%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	45.90%
Terrestrial	Environmental → Terrestrial	41.80%
Aquatic	Environmental → Aquatic	11.48%
Bioremediation	Engineered → Bioremediation	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	38.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.95%
Rhizoplane	Host-Associated → Plants → Rhizoplane	22.13%
Sediment	Environmental → Aquatic → Sediment	11.48%
Floodplain	Environmental → Terrestrial → Floodplain	2.46%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.82%
Roots	Host-Associated → Plants → Roots	0.82%
Metal	Engineered → Bioremediation → Metal	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.79%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	18.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	12.30%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	11.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.66%
Loam	Environmental → Terrestrial → Soil → Loam	5.74%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	2.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.64%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.64%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.82%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.82%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.13%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	18.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	12.30%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	11.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.66%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	9.02%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.74%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	2.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.64%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.82%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.82%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.82%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	9.02%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	7.38%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	7.38%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	5.74%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.10%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.28%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.28%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.46%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	2.46%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.46%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.64%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.64%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.64%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.82%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.82%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.82%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.82%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Arabidopsis Rhizosphere	0.82%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005288	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011435	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT660_2	Environmental	Open in IMG/M
3300012476	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.yng.070610	Host-Associated	Open in IMG/M
3300012484	Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.old.190510	Environmental	Open in IMG/M
3300012487	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.old.130510	Host-Associated	Open in IMG/M
3300012488	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.yng.030610	Host-Associated	Open in IMG/M
3300012501	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610	Environmental	Open in IMG/M
3300012502	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.yng.040610	Host-Associated	Open in IMG/M
3300012514	Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.old.130510	Environmental	Open in IMG/M
3300012672	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT266_2	Environmental	Open in IMG/M
3300012882	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2	Environmental	Open in IMG/M
3300012884	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2	Environmental	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014867	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT433_16_10D	Environmental	Open in IMG/M
3300014880	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_16_10D	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023260	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S197-509C-6	Environmental	Open in IMG/M
3300023270	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L169-409R-5	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300027543	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027573	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034894	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A0.2	Engineered	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0065714_105313102	3300005288	Miscanthus Rhizosphere	CLFPFVAQPMIAEALGLTPMGLRDFMKRRRTELPALLKRTL*
Ga0065705_103997222	3300005294	Switchgrass Rhizosphere	QFLVTLVGSCLYPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL*
Ga0070676_103213152	3300005328	Miscanthus Rhizosphere	PVPADQFLVTLVGSCLFPFVGQPMIAEALGLGPKELRDFMKRRRAELPALLKRTL*
Ga0070666_112411001	3300005335	Switchgrass Rhizosphere	KRKKITPVPADQFLVTLVGSCLFPFVAQPMIAEALGLGPKELRDFMKRRRAELPALLKRTL*
Ga0070689_1008380271	3300005340	Switchgrass Rhizosphere	FLVTLVGSCLYPFVAQPMIAEALGLGPKELRDFMKRRRAELPALLKRTL*
Ga0070689_1016395522	3300005340	Switchgrass Rhizosphere	TLVGSCLYPFVAQPMIAEALGLTPKGLRDFMKRRRVELPALLKRTL*
Ga0070661_1005225792	3300005344	Corn Rhizosphere	VAADQFLVTLVGSCLFPFVVQPMIAEALGLSTTGVRQFMKRRRTELPALLKRMLHS*
Ga0070692_111678541	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	KIEPVSADQFLVTLVGSCLWPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL*
Ga0070675_1005951391	3300005354	Miscanthus Rhizosphere	VTLVGSCLFPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL*
Ga0070671_1015996802	3300005355	Switchgrass Rhizosphere	TLVGSCLYPFVAQPMIAEALGLTPKGLRDFMNRRRTELPALLKRTL*
Ga0070674_1001390213	3300005356	Miscanthus Rhizosphere	QINERAKQKKIVPVPADQFLVTLVGSCLYPFVAQPMIAEALGLTPKGLRAFMKRRRVELPALLKRTL*
Ga0070674_1015491661	3300005356	Miscanthus Rhizosphere	VTLVGSCLYPFVAQPMIAEALGLRPKELRDFMKRRRAELPALLKRTL*
Ga0070711_1016175841	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	YPFVAQPMIAEALGLGPKELRAFMKRRRTELPALLKRTL*
Ga0070663_1007221152	3300005455	Corn Rhizosphere	VGSCLYPFVAQPMIAEALGLTPKGLRDFMKRRRVELPALLKRTL*
Ga0070678_1016006971	3300005456	Miscanthus Rhizosphere	TLVGSCLFPFVAQPMIAEALGLTPMGLRDFMKRRRTELPALLKRTL*
Ga0068867_1009735532	3300005459	Miscanthus Rhizosphere	TLVGSCLFPFVAQPMIAEALGLGPKELRDFMKRRRAELPALLKRT*
Ga0068867_1023530841	3300005459	Miscanthus Rhizosphere	FPFVAQPMIAEALGLGPKELRDFMKRRRAELPALLKRTL*
Ga0070685_109917961	3300005466	Switchgrass Rhizosphere	AKRKKIAPVAADQFLVTLVGSCLYPFVAQPMIAEALGLGPRELRAFMKRRRAELPALLKRTL*
Ga0070665_1013701822	3300005548	Switchgrass Rhizosphere	LVGSCLYPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL*
Ga0068852_1018339131	3300005616	Corn Rhizosphere	PFVAQPMIAEALGLGPKELRDFMTRRRVELPALLKRTL*
Ga0068859_1023964202	3300005617	Switchgrass Rhizosphere	TLVGSCLFPFVAQPMIAEALGLGPKDFRDFMKRRRAELPALLKRTL*
Ga0068864_1026974402	3300005618	Switchgrass Rhizosphere	LVGSCLFPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL*
Ga0068870_104104932	3300005840	Miscanthus Rhizosphere	ADQFLVTLVGSCLYPFVAQPMIAEALGLTPKGLRAFMKRRRVELPALLKRTL*
Ga0068863_1004603411	3300005841	Switchgrass Rhizosphere	AADQFLVTLVGSCLFPFVAQPMIAEALGLSTTGVRQFMKRRRTELPALLKRMLHS*
Ga0068863_1019867852	3300005841	Switchgrass Rhizosphere	YPFVAQPMIAEALGLGPKELRDFMKRRRAELPALLKRTL*
Ga0068858_1008680162	3300005842	Switchgrass Rhizosphere	VTLVGSCLYPFVAQPMIAEALGLTPKGLRDFMKRRRVELPALLKRTL*
Ga0068860_1014592862	3300005843	Switchgrass Rhizosphere	KIAPVAADQFLVTLVGGCLYPFVAQPMIAEALGLGPKELRDFMKRRRAELPALLKRTL*
Ga0068862_1004357691	3300005844	Switchgrass Rhizosphere	LYPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL*
Ga0075417_105038001	3300006049	Populus Rhizosphere	DQFLVTLVGSCLYPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL*
Ga0075422_105614112	3300006196	Populus Rhizosphere	LYPFVAQPMIAEALGLTPKGLRDFMKRRRVELPALLKRTL*
Ga0075431_1012520891	3300006847	Populus Rhizosphere	EWKKIAPVPADQFLVTLVGGCLYTFVVQPMIAEALGLGPKELRALMKRRRAELPALLKRTL*
Ga0075420_1003854704	3300006853	Populus Rhizosphere	ADQFLVTLVGSCLYPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL*
Ga0068865_1014566991	3300006881	Miscanthus Rhizosphere	VAPVPADQFLVTLVGSCLWPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL*
Ga0068865_1020187871	3300006881	Miscanthus Rhizosphere	YPFVAQPMIAEALGLRPKGLRDFMKRRRAELPALLKRTL*
Ga0075435_1011742592	3300007076	Populus Rhizosphere	TLVGSCLYPFVAQPMIAEALGLTPRGLRDFMKRRRVELPALLKRTL*
Ga0105244_102569921	3300009036	Miscanthus Rhizosphere	TPVPADQFLVTLVGSCLFPFVAQPMIAEALGLGPKDFRDFMKRRRAELPALLKRTL*
Ga0111539_121167941	3300009094	Populus Rhizosphere	NERAKQKGIVPVPADQFLVTLVGSCLYPFVAQPMIAEALGLTPRGLRDFMKRRRVELPALLKRTL*
Ga0105247_116804402	3300009101	Switchgrass Rhizosphere	PVAADQFLVTLVGSCLYPFVAQPMIAEALGLGPKELRNFMKRRRAELPALLKRTL*
Ga0105243_117305122	3300009148	Miscanthus Rhizosphere	LVGSCLWPFVAQPMIAEALGLTPKGLRDFRKRRRTELPALLKRTL*
Ga0111538_127035392	3300009156	Populus Rhizosphere	SCLYPFVAQPMIAEALGLTPRGLRDFMKRRRTELPALLKRTL*
Ga0105248_117850401	3300009177	Switchgrass Rhizosphere	LVGSCLWPFVAQPMIAEALGLTPRGLRDFMKRRRTELPALLKRTL*
Ga0105340_12110721	3300009610	Soil	QPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL*
Ga0134122_120396912	3300010400	Terrestrial Soil	KKIAPVPADQFLVTLVGSCLYPFVAQPMIAEALGLTPRGLRDFMKRRRVELPALLKRTL*
Ga0137426_11909021	3300011435	Soil	TLVGSCLYTFVVQPMIAEALGLGPKELRAFMKRRRAELPALLKRTL*
Ga0157344_10057382	3300012476	Arabidopsis Rhizosphere	VPVPADQFLVTLVGSCLYPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL*
Ga0157333_10327941	3300012484	Soil	VAQPMIAEALGLTPRGLRDFMKRRRVELPALLKRTL*
Ga0157321_10389071	3300012487	Arabidopsis Rhizosphere	IVPVPADQFLVTLVGSCLYPFWAQPMIAEALGLTPRGLRDFMKRRRVELPALLKRTL*
Ga0157343_10087592	3300012488	Arabidopsis Rhizosphere	QQMIAEALGLTPKGLRDFMKRRRTELPALLKRTL*
Ga0157351_10232421	3300012501	Unplanted Soil	QINERAKQEKIVPVPADQFLVTLVGSCLYPFVAQPMIAEALGLGPKELRDFMKRRRVELPALLKRTL*
Ga0157347_10443371	3300012502	Arabidopsis Rhizosphere	PADQFLVTLVGSCLYPFVAQPMIAEALGLTAKGLRDFMKRRRAELPALLKRTL*
Ga0157330_10196222	3300012514	Soil	DQFLVTLVGSCLYPFVAQPMIAEALGLTPRGLRDFLKRRRVELPALLKRTL*
Ga0137317_10110881	3300012672	Soil	RKKIAPVSADQFLVTLVGSCLWPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL
Ga0157304_10258752	3300012882	Soil	PADQFLVTLVGSCLYPFVAQPMIAEALGLRPKELRDFMKRRRAELPALLKRTL*
Ga0157300_10369142	3300012884	Soil	LVTLVGSCLFPFVAQPMIAEALGLGPKELRAFMKRRRAELPALLKRTL*
Ga0157305_100702651	3300012891	Soil	SCLWPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL*
Ga0157305_101028101	3300012891	Soil	AKQQKIVPVPADQFLVTLVGSCLYPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL*
Ga0157303_101545251	3300012896	Soil	TLVGSCLFPFVAQPMFAEALGLSATGVRQFMKRRRTELPALLKRTL*
Ga0157299_101302521	3300012899	Soil	QKKSVPVPADQFLVTLVGSCLYPFVAQPMIAEALGLTSRGLRDFMKRRRVELPALLKRTL
Ga0157289_101090722	3300012903	Soil	MGWRKKIEPVSADQFLVTLVGSCLWPFVAQPMIAEALGLAPKGLRDFMKRRRTELPALLKRTL*
Ga0157283_104056151	3300012907	Soil	PVAADQFLVTLVGSCLYPFVAQPMIAEALGLGPKELRDFMKRRRAELPALLKRTL*
Ga0157308_101335502	3300012910	Soil	LVGSCLWPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL*
Ga0164299_112300871	3300012958	Soil	APVAADQFLVTLVGSCLYPFVAQPMIAEALGLGPNELRTFMKRRRAALPALLKRTL*
Ga0164299_115107002	3300012958	Soil	WPFVAQPMLAEALGLTPKGLRDFRKRRRTELPALLKRTL*
Ga0164302_115347931	3300012961	Soil	QPMIAEALGLTPRGLRDFMKRRRVELPALLKRTL*
Ga0164302_116137702	3300012961	Soil	VAADQFLVTLVGSCLFPFVAQPMFAEALGLTATGVRQFMKRRRAELPALLKRTL*
Ga0164309_115223982	3300012984	Soil	GSCLFPFVAQPMIAEALGLGPKELRAFMKRRRAELPALLKRTL*
Ga0164304_107910031	3300012986	Soil	KKIGPVAADQFLVTLVGSCLYPFVAQPMIAEALGLTPKGLRDFMKRRRVELPALLKRTL*
Ga0164307_114038242	3300012987	Soil	AKRKNIAPVPADQFLVTLVGSCLYPFVAQPMIAEALGLGPKELRAFMKRRRAELPALLKRTL*
Ga0164307_119162221	3300012987	Soil	PADQFLVTLVGSCLYPFVAQPMIAEALGLTPKGLRDFMKRRRVELPALLKRTL*
Ga0157307_11455702	3300013096	Soil	ASCLFPFVAQPIIAEALGLTSKGLRDFMKRRRTELPALLKRTL*
Ga0157374_114841622	3300013296	Miscanthus Rhizosphere	FLVTLVGSCLYPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL*
Ga0163162_121457941	3300013306	Switchgrass Rhizosphere	INERARRKKIAPVSADQFLVTLVGSCLYPFVAQPMIAEALGLTPKGLRDFMKRRRIELPALLKRTL*
Ga0180076_10712941	3300014867	Soil	SCLFPFVAQPMFAEALGLSATGVRQFMKRRRTELPALLKRTL*
Ga0180082_11152971	3300014880	Soil	KRIKPVSADQFLVTLVGSCLWPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL*
Ga0157376_120154991	3300014969	Miscanthus Rhizosphere	INELAKRKKIAPVPADQFLVTLVGSCLYPFVAQPMIAEALGLRPKELRDFMKRRRAELPALLKRTL*
Ga0132257_1000462031	3300015373	Arabidopsis Rhizosphere	FLVTLVGSCLYPFVAQPMIAEALGLTPKGLRDFMKRRRIELPALLKRTL*
Ga0190266_105592762	3300017965	Soil	ADQFLVTLVGSCLFPFVAQPMIAEALGLSATGVRQFMKRRRTELPALLKRTLSQ
Ga0184620_101138191	3300018051	Groundwater Sediment	LVGSCLWPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL
Ga0184611_13477052	3300018067	Groundwater Sediment	FLVTLVGSCLWPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL
Ga0184640_103904222	3300018074	Groundwater Sediment	QFLVTLVGSCLFPFVAQPMFAEALGLSATGVRQFMKRRRTELPALLKRTL
Ga0184628_100523923	3300018083	Groundwater Sediment	ARRKKIAPVPADQFLVTLVGSCLYPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL
Ga0184628_101837982	3300018083	Groundwater Sediment	FPFVAQPMFAEALGLSATGVRQFMKRRRTELPALLKRTL
Ga0190270_122335041	3300018469	Soil	DQFLVTLVGSCLWPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL
Ga0190271_130870872	3300018481	Soil	VTLVGSCLWPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL
Ga0173481_101784452	3300019356	Soil	SCLWPFVAQPMIAEALGLTPTGLRDFMKRRRTELPALLKRTL
Ga0222622_105470642	3300022756	Groundwater Sediment	QFLVTLVGSCLFPFVAQPMIAEALGLGPRELRGFMKRRRTELPALLKRTL
Ga0222622_106702872	3300022756	Groundwater Sediment	AQPMIAEALGLRPKELRGFMKRRRAELPALLKRTL
Ga0247798_10599082	3300023260	Soil	PVPADQFLVTLVGSCLFPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL
Ga0247784_10535301	3300023270	Plant Litter	FPFVAQPMLAEALGLSATGVRQFMKRRRTELPALLKRTL
Ga0207697_102400532	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	LYPFVAQPMIAEALGLTAKGLRDFMKRRRTELPALLKRTL
Ga0207682_101565733	3300025893	Miscanthus Rhizosphere	LVGSCLWPFVAQPMIAEALGLTPKGLRDFIKRRRTELPALLKRTL
Ga0207699_111720052	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VGSCLYPFVAQPMIAEALGLGPKELRAFMKRRRTELPALLKRTL
Ga0207659_110837951	3300025926	Miscanthus Rhizosphere	LVGSCLFPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL
Ga0207659_113111081	3300025926	Miscanthus Rhizosphere	PADQFLVTLVGSCLYPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL
Ga0207659_119246452	3300025926	Miscanthus Rhizosphere	LVTLVGSCLFPFVAQPMIAEALGLGPKDFRDFMKRRRAELPALLKRTL
Ga0207644_114716282	3300025931	Switchgrass Rhizosphere	ADQFLVTLVGSCLYPFVAQPMIAEALGLTPKGLRDFMNRRRTELPALLKRTL
Ga0207669_103214971	3300025937	Miscanthus Rhizosphere	CLWPFVAQPMIAEALGLTPRGLRDFMKRRRTELPALLKRTL
Ga0207677_106532172	3300026023	Miscanthus Rhizosphere	RKKIAPVSADQFLVTLVGSCLYPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL
Ga0207708_106171942	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	TLVGSCLFPFVAQPMIAEALGLGPKELRDFMKRRRAELPALLKRTL
Ga0207683_112383052	3300026121	Miscanthus Rhizosphere	YPFVAQPMIAEALGLTPKGLRDFMKRRRIELPALLKRTL
Ga0207698_116847002	3300026142	Corn Rhizosphere	VEQQINERAKRKKIAPVPADQFLVTLVGSCLYPFVAQPMIAEALGLTPKGLRDFMKRRRVELPALLKRTL
Ga0208185_10129761	3300027533	Soil	ADQFLVTLVGSCLYPFVAQPMIAEALGLTPRGLRDFMKRRRTELPALLKRTL
Ga0209999_11067901	3300027543	Arabidopsis Thaliana Rhizosphere	PVPADQFLVTLVGSCLFPFVAQPMIAEALGLGPKELRDFMKRRRTELPALLKRTL
Ga0208454_10838242	3300027573	Soil	GSCLFPFVAQPMFAEALGLSATGVRQFMKRRRTELPALLKRTL
Ga0268265_104429223	3300028380	Switchgrass Rhizosphere	FPFVAQPMIAEALGLGPKELRDFMKRRRAELPALLKRTL
Ga0268265_122193711	3300028380	Switchgrass Rhizosphere	LYPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL
Ga0247828_106745592	3300028587	Soil	VAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL
Ga0247822_108423952	3300028592	Soil	RARRKKIAPVPADQFLVTLVGSCLYPFVAQPMIAEALGLTPRGLRDFMKRRRTELPALLKRTL
Ga0310886_100906621	3300031562	Soil	NERARQKQIVPVPADQFLVTLVGSCLYPFVAQPMIAEALGLTPRGLRDFMKRRRVELPALLKRTL
Ga0310886_101818451	3300031562	Soil	RKKIAPVPADQFLVTLVGSCLYPFVAQPMIAEALGLGPKELRNFMKRRRTELPALLKRTL
Ga0310915_100875184	3300031573	Soil	EVKRKKLAPVPADQFLLTLVGSCLYPFAARSTLADVLGLGPKQVRRFMERRRKELPAFLKRALQR
Ga0310892_104658722	3300031858	Soil	TLVGSCLFPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKKTL
Ga0310900_105427952	3300031908	Soil	PFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL
Ga0310891_100629171	3300031913	Soil	ERAKQKKIAPVPADQFLVTLVGSCLYPFVAQPMIAEALGLTPRGLRDFMKRRRVELPALLKRTL
Ga0310903_105760891	3300032000	Soil	QFLVTLVGSCLYPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL
Ga0310897_104352141	3300032003	Soil	VTLVGSCLFPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKKTL
Ga0310890_111305841	3300032075	Soil	INERAKQEKIVPVPADQFLVTLVGSCLYPFVAQPMIAEALGLTPRGLRDFMKRRRVELPALLKRTL
Ga0247830_114750441	3300033551	Soil	VPADQFLVTLVGSCLFPFVAQPMIAEALGLGPKELRDFMKRRRAELPALLKRTL
Ga0364925_0189440_2_211	3300034147	Sediment	EQQINERARRKKIAPVPADQFLVTLVGSCLYPFVAQPMIAEALGLTPKGLRDFMKRRRVELPALLKRTL
Ga0364925_0191783_616_750	3300034147	Sediment	VGSCLFPFVAQPMFAEALGLSATGVRQFMKRRRTELPALLKRTL
Ga0364929_0031374_2_160	3300034149	Sediment	ADQFLVTLVGSCLWPFVAQPMIAEALGLTPKGLRDFMKRRRTELPALLKRTL
Ga0373916_0019512_674_835	3300034894	Sediment Slurry	PADQFLVTLVGSCLYPFVAQPMIAEALGLTPRGLRDFMKRRRVELPALLKRTL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F071381

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences