Metagenome Family F071113

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F071113
Family Type	Metagenome
Number of Sequences	122
Average Sequence Length	73 residues
Representative Sequence	MRLRVSNPALIPDLLEFLRSRLDVVAEEVSDDEVEVSLVGSYNSDAQRMELYLRVRAWEAGRRSTGVEVELVD
Number of Associated Samples	83
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	13.93 %
% of genes near scaffold ends (potentially truncated)	24.59 %
% of genes from short scaffolds (< 2000 bps)	83.61 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.82

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (50.820 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (39.344 % of family members)
Environment Ontology (ENVO)	Unclassified (40.984 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.68% β-sheet: 20.79% Coil/Unstructured: 47.52%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.82
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.82
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
e.8.1.1: DNA polymerase I	d1q8ia2	1q8i	0.76953
d.58.31.0: automated matches	d7b1sb1	7b1s	0.74869
e.8.1.0: automated matches	d4ahca2	4ahc	0.74766
d.58.29.2: GGDEF domain	d1w25a3	1w25	0.72871
e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain	d1jiha2	1jih	0.71917

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF00072	Response_reg	2.46
PF00903	Glyoxalase	1.64
PF00313	CSD	1.64
PF04545	Sigma70_r4	1.64
PF05988	DUF899	0.82
PF00561	Abhydrolase_1	0.82
PF03633	Glyco_hydro_65C	0.82
PF00574	CLP_protease	0.82
PF13533	Biotin_lipoyl_2	0.82
PF02738	MoCoBD_1	0.82
PF13487	HD_5	0.82
PF08241	Methyltransf_11	0.82
PF02746	MR_MLE_N	0.82
PF13291	ACT_4	0.82
PF08734	GYD	0.82
PF01545	Cation_efflux	0.82
PF01527	HTH_Tnp_1	0.82
PF13524	Glyco_trans_1_2	0.82
PF13328	HD_4	0.82
PF13468	Glyoxalase_3	0.82
PF06348	DUF1059	0.82
PF08669	GCV_T_C	0.82
PF00676	E1_dh	0.82
PF07007	LprI	0.82
PF02036	SCP2	0.82
PF00892	EamA	0.82
PF00571	CBS	0.82
PF00107	ADH_zinc_N	0.82
PF13489	Methyltransf_23	0.82
PF00708	Acylphosphatase	0.82
PF06224	HTH_42	0.82
PF13458	Peripla_BP_6	0.82
PF07295	DUF1451	0.82
PF02624	YcaO	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.64
COG0740	ATP-dependent protease ClpP, protease subunit	Posttranslational modification, protein turnover, chaperones [O]	1.64
COG4948	L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily	Cell wall/membrane/envelope biogenesis [M]	1.64
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.82
COG0567	2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes	Energy production and conversion [C]	0.82
COG1030	Membrane-bound serine protease NfeD, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	0.82
COG1071	TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha	Energy production and conversion [C]	0.82
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.82
COG1554	Phosphatase/phosphodiesterase/kojibiose phosphorylase YcjT/PafA/Npp1, AlkP superfamily	Carbohydrate transport and metabolism [G]	0.82
COG1944	Ribosomal protein S12 methylthiotransferase accessory factor YcaO	Translation, ribosomal structure and biogenesis [J]	0.82
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	0.82
COG3755	Uncharacterized conserved protein YecT, DUF1311 family	Function unknown [S]	0.82
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.82
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.82
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.82 %
Unclassified	root	N/A	49.18 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.82 %
Unclassified	root	N/A	49.18 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.82 %
Unclassified	root	N/A	49.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.18 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	36.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.18 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	21.31 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.64 %
Deinococcus-Thermus	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.18 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	14.75 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.64 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	0.82 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.18 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	13.11 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.64 %
Deinococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales	0.82 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.82 %
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.18 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.11 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.64 %
Deinococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae	0.82 %
Cellulomonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae	0.82 %
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.18 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.11 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.64 %
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	0.82 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	0.82 %
Deinococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.18 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.11 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.64 %
Cellulomonas aerilata	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → Cellulomonas aerilata	0.82 %
Gaiella occulta	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	0.82 %
Deinococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005171\|Ga0066677_10360954	Not Available	832	Open in IMG/M
3300005174\|Ga0066680_10516587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	751	Open in IMG/M
3300005177\|Ga0066690_10109853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	1780	Open in IMG/M
3300005177\|Ga0066690_10635323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	712	Open in IMG/M
3300005186\|Ga0066676_10208971	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1258	Open in IMG/M
3300005468\|Ga0070707_100827591	Not Available	890	Open in IMG/M
3300005542\|Ga0070732_10893244	Not Available	543	Open in IMG/M
3300005552\|Ga0066701_10824211	Not Available	552	Open in IMG/M
3300005575\|Ga0066702_10843892	Not Available	546	Open in IMG/M
3300006034\|Ga0066656_10642891	All Organisms → cellular organisms → Bacteria → Terrabacteria group	684	Open in IMG/M
3300006755\|Ga0079222_10208873	All Organisms → cellular organisms → Bacteria	1183	Open in IMG/M
3300006800\|Ga0066660_10292746	Not Available	1296	Open in IMG/M
3300009012\|Ga0066710_101101130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1228	Open in IMG/M
3300009012\|Ga0066710_101582792	Not Available	1005	Open in IMG/M
3300009012\|Ga0066710_103816706	All Organisms → cellular organisms → Bacteria → Terrabacteria group	565	Open in IMG/M
3300009012\|Ga0066710_103974365	Not Available	553	Open in IMG/M
3300009038\|Ga0099829_10160352	All Organisms → cellular organisms → Bacteria	1801	Open in IMG/M
3300009038\|Ga0099829_10616368	Not Available	902	Open in IMG/M
3300009038\|Ga0099829_11483471	Not Available	560	Open in IMG/M
3300009038\|Ga0099829_11738040	Not Available	512	Open in IMG/M
3300009088\|Ga0099830_10125954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1944	Open in IMG/M
3300009088\|Ga0099830_11139631	Not Available	647	Open in IMG/M
3300009088\|Ga0099830_11173728	Not Available	637	Open in IMG/M
3300009089\|Ga0099828_11621775	Not Available	569	Open in IMG/M
3300009090\|Ga0099827_10116162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2148	Open in IMG/M
3300009090\|Ga0099827_10493141	Not Available	1052	Open in IMG/M
3300009090\|Ga0099827_10942757	Not Available	748	Open in IMG/M
3300009137\|Ga0066709_100604897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1562	Open in IMG/M
3300009137\|Ga0066709_100725162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1432	Open in IMG/M
3300009137\|Ga0066709_102257338	Not Available	748	Open in IMG/M
3300009137\|Ga0066709_103097316	Not Available	608	Open in IMG/M
3300009137\|Ga0066709_103357015	Not Available	582	Open in IMG/M
3300010037\|Ga0126304_10160726	Not Available	1458	Open in IMG/M
3300010041\|Ga0126312_10986447	All Organisms → cellular organisms → Bacteria → Terrabacteria group	616	Open in IMG/M
3300010336\|Ga0134071_10775487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	511	Open in IMG/M
3300011003\|Ga0138514_100000428	All Organisms → cellular organisms → Bacteria	4413	Open in IMG/M
3300011269\|Ga0137392_10169263	All Organisms → cellular organisms → Bacteria	1774	Open in IMG/M
3300011269\|Ga0137392_10436262	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1088	Open in IMG/M
3300011269\|Ga0137392_11113084	Not Available	647	Open in IMG/M
3300011987\|Ga0120164_1036523	Not Available	738	Open in IMG/M
3300011991\|Ga0120153_1029034	Not Available	1155	Open in IMG/M
3300011992\|Ga0120146_1005410	Not Available	3153	Open in IMG/M
3300011992\|Ga0120146_1033064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	906	Open in IMG/M
3300011994\|Ga0120157_1013630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2072	Open in IMG/M
3300011997\|Ga0120162_1126270	Not Available	518	Open in IMG/M
3300011999\|Ga0120148_1014770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1837	Open in IMG/M
3300012001\|Ga0120167_1035839	Not Available	1151	Open in IMG/M
3300012003\|Ga0120163_1083870	Not Available	714	Open in IMG/M
3300012008\|Ga0120174_1107589	Not Available	684	Open in IMG/M
3300012010\|Ga0120118_1103438	Not Available	690	Open in IMG/M
3300012010\|Ga0120118_1156048	All Organisms → cellular organisms → Bacteria → Terrabacteria group	545	Open in IMG/M
3300012011\|Ga0120152_1129586	Not Available	686	Open in IMG/M
3300012011\|Ga0120152_1198298	Not Available	502	Open in IMG/M
3300012019\|Ga0120139_1018196	Not Available	1605	Open in IMG/M
3300012019\|Ga0120139_1089916	All Organisms → cellular organisms → Bacteria → Terrabacteria group	764	Open in IMG/M
3300012189\|Ga0137388_10891858	All Organisms → cellular organisms → Bacteria → Terrabacteria group	823	Open in IMG/M
3300012198\|Ga0137364_10150681	All Organisms → cellular organisms → Bacteria	1681	Open in IMG/M
3300012199\|Ga0137383_10797161	Not Available	690	Open in IMG/M
3300012200\|Ga0137382_10662530	Not Available	747	Open in IMG/M
3300012201\|Ga0137365_10239476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1351	Open in IMG/M
3300012204\|Ga0137374_10043118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4749	Open in IMG/M
3300012204\|Ga0137374_10063791	All Organisms → cellular organisms → Bacteria	3679	Open in IMG/M
3300012206\|Ga0137380_11050587	Not Available	695	Open in IMG/M
3300012208\|Ga0137376_10055016	All Organisms → cellular organisms → Bacteria	3267	Open in IMG/M
3300012208\|Ga0137376_10302489	Not Available	1388	Open in IMG/M
3300012208\|Ga0137376_11453630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → Cellulomonas aerilata	576	Open in IMG/M
3300012209\|Ga0137379_10353061	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1380	Open in IMG/M
3300012209\|Ga0137379_10471300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1164	Open in IMG/M
3300012211\|Ga0137377_10246891	All Organisms → cellular organisms → Bacteria	1715	Open in IMG/M
3300012211\|Ga0137377_10410767	All Organisms → cellular organisms → Bacteria	1292	Open in IMG/M
3300012349\|Ga0137387_11170642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	544	Open in IMG/M
3300012350\|Ga0137372_10018540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6560	Open in IMG/M
3300012353\|Ga0137367_10083950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2353	Open in IMG/M
3300012356\|Ga0137371_11025979	Not Available	624	Open in IMG/M
3300012358\|Ga0137368_10091166	All Organisms → cellular organisms → Bacteria	2397	Open in IMG/M
3300012358\|Ga0137368_10105159	All Organisms → cellular organisms → Bacteria	2180	Open in IMG/M
3300012359\|Ga0137385_11387751	Not Available	566	Open in IMG/M
3300012360\|Ga0137375_10026330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6672	Open in IMG/M
3300012360\|Ga0137375_11287341	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300012363\|Ga0137390_11416016	Not Available	639	Open in IMG/M
3300012363\|Ga0137390_11526213	Not Available	608	Open in IMG/M
3300012363\|Ga0137390_11719442	Not Available	561	Open in IMG/M
3300012917\|Ga0137395_11007985	Not Available	596	Open in IMG/M
3300012929\|Ga0137404_11073730	Not Available	738	Open in IMG/M
3300013294\|Ga0120150_1108988	All Organisms → cellular organisms → Bacteria → Terrabacteria group	521	Open in IMG/M
3300013501\|Ga0120154_1001249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9400	Open in IMG/M
3300013501\|Ga0120154_1045407	Not Available	1058	Open in IMG/M
3300013763\|Ga0120179_1104450	Not Available	625	Open in IMG/M
3300013764\|Ga0120111_1138240	Not Available	561	Open in IMG/M
3300013765\|Ga0120172_1002751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6533	Open in IMG/M
3300013768\|Ga0120155_1076464	Not Available	955	Open in IMG/M
3300013772\|Ga0120158_10004519	All Organisms → cellular organisms → Bacteria	14712	Open in IMG/M
3300013772\|Ga0120158_10025597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4676	Open in IMG/M
3300013772\|Ga0120158_10056689	All Organisms → cellular organisms → Bacteria	2650	Open in IMG/M
3300014031\|Ga0120173_1030927	Not Available	771	Open in IMG/M
3300014154\|Ga0134075_10168737	Not Available	938	Open in IMG/M
3300014823\|Ga0120170_1068494	Not Available	755	Open in IMG/M
3300014827\|Ga0120171_1087660	All Organisms → cellular organisms → Bacteria → Terrabacteria group	813	Open in IMG/M
3300018027\|Ga0184605_10457096	All Organisms → cellular organisms → Bacteria → Terrabacteria group	562	Open in IMG/M
3300018071\|Ga0184618_10276568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	713	Open in IMG/M
3300018071\|Ga0184618_10432510	Not Available	555	Open in IMG/M
3300018433\|Ga0066667_11164744	All Organisms → cellular organisms → Bacteria → Terrabacteria group	669	Open in IMG/M
3300019888\|Ga0193751_1006897	All Organisms → cellular organisms → Bacteria	6235	Open in IMG/M
3300021073\|Ga0210378_10102968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1112	Open in IMG/M
3300021080\|Ga0210382_10293383	All Organisms → cellular organisms → Bacteria → Terrabacteria group	715	Open in IMG/M
3300021080\|Ga0210382_10500103	Not Available	538	Open in IMG/M
3300021344\|Ga0193719_10191647	All Organisms → cellular organisms → Bacteria → Terrabacteria group	875	Open in IMG/M
3300025922\|Ga0207646_10009947	All Organisms → cellular organisms → Bacteria	9349	Open in IMG/M
3300025922\|Ga0207646_10613591	Not Available	976	Open in IMG/M
3300025939\|Ga0207665_10880906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	710	Open in IMG/M
3300026527\|Ga0209059_1075611	Not Available	1437	Open in IMG/M
3300026552\|Ga0209577_10115614	Not Available	2155	Open in IMG/M
3300027862\|Ga0209701_10231280	All Organisms → cellular organisms → Bacteria	1089	Open in IMG/M
3300027875\|Ga0209283_10174045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1429	Open in IMG/M
3300027875\|Ga0209283_10554962	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300027882\|Ga0209590_10238346	Not Available	1158	Open in IMG/M
3300027882\|Ga0209590_10397422	Not Available	890	Open in IMG/M
3300028784\|Ga0307282_10339249	Not Available	726	Open in IMG/M
3300028828\|Ga0307312_10545145	Not Available	766	Open in IMG/M
3300028878\|Ga0307278_10098386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1316	Open in IMG/M
3300028878\|Ga0307278_10516280	All Organisms → cellular organisms → Bacteria → Terrabacteria group	521	Open in IMG/M
3300028885\|Ga0307304_10602710	Not Available	509	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.08%
Aquatic	Environmental → Aquatic	4.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.26%
Freshwater	Environmental → Aquatic → Freshwater	2.46%
Sediment	Environmental → Aquatic → Sediment	2.46%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	90.16%
Loam	Environmental → Terrestrial → Soil → Loam	4.10%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.46%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.18%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	23.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.39%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.28%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.46%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.82%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.82%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	39.34%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	23.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.20%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	8.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.28%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.46%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.46%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.64%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.64%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.82%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011987	Permafrost microbial communities from Nunavut, Canada - A20_80cm_0M	Environmental	Open in IMG/M
3300011991	Permafrost microbial communities from Nunavut, Canada - A34_65cm_12M	Environmental	Open in IMG/M
3300011992	Permafrost microbial communities from Nunavut, Canada - A23_65cm_12M	Environmental	Open in IMG/M
3300011994	Permafrost microbial communities from Nunavut, Canada - A7_65cm_12M	Environmental	Open in IMG/M
3300011997	Permafrost microbial communities from Nunavut, Canada - A15_80cm_18M	Environmental	Open in IMG/M
3300011999	Permafrost microbial communities from Nunavut, Canada - A28_65cm_6M	Environmental	Open in IMG/M
3300012001	Permafrost microbial communities from Nunavut, Canada - A24_80cm_12M	Environmental	Open in IMG/M
3300012003	Permafrost microbial communities from Nunavut, Canada - A20_80cm_0.25M	Environmental	Open in IMG/M
3300012008	Permafrost microbial communities from Nunavut, Canada - A39_80cm_12M	Environmental	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012011	Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M	Environmental	Open in IMG/M
3300012019	Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013294	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0M	Environmental	Open in IMG/M
3300013501	Permafrost microbial communities from Nunavut, Canada - A35_65cm_0.25M	Environmental	Open in IMG/M
3300013763	Permafrost microbial communities from Nunavut, Canada - A15_65cm_0M	Environmental	Open in IMG/M
3300013764	Permafrost microbial communities from Nunavut, Canada - A28_35cm_6M	Environmental	Open in IMG/M
3300013765	Permafrost microbial communities from Nunavut, Canada - A30_80cm_6M	Environmental	Open in IMG/M
3300013768	Permafrost microbial communities from Nunavut, Canada - A35_65cm_0M	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014031	Permafrost microbial communities from Nunavut, Canada - A35_80cm_0.25M	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014823	Permafrost microbial communities from Nunavut, Canada - A3_80cm_0M	Environmental	Open in IMG/M
3300014827	Permafrost microbial communities from Nunavut, Canada - A3_80cm_18M	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066677_103609542	3300005171	Soil	LVEFLRSRADVVAEEVSDDEVEVSLLGSYNSDAMRLELYLRVRAWEAGRRSTGVEIELVD
Ga0066680_105165872	3300005174	Soil	MRLRLSNPALLPDLIEFLRSRLDAVAEQVSDHEVEVSLVGSYNADAMRMELYLRVRAWEAGRRAAGVEVELID*
Ga0066690_101098533	3300005177	Soil	MRLRLSNPALIPDLVEFLRSRADLIAEEVNDDEVEVSLLGSYNSDAMRMELYLRVRAWEAGRRSTGVEIELVD*
Ga0066690_106353232	3300005177	Soil	MRLRVSDTTFVPELVAYLESDLDGVAQRVGDDEVEVSLLGSYREDTLRMELYLRIRAWEAGRRDRGVVVDVLE*
Ga0066676_102089713	3300005186	Soil	MRLRVSDPALVPELLEFLHSRLDVVTEQITANEVNLCLLGSYALDSMRMELHLRVRAWEAAQRSKGVEVEFVD*
Ga0070707_1008275911	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MRLRVSNPALIPDLLEFLRSRADVVAEEVSVNEVDVSLVGSYNADAMHMELYLRVRAWEAGRRSTGVEV
Ga0070732_108932443	3300005542	Surface Soil	MRLRVNDPGLVPALVEFLKARLDAVAVPVSENEVEVSLLGSYTNDAMRFELYLRVRAWEAGRAATVEIVD*
Ga0066701_108242111	3300005552	Soil	MRLRLSNPALIPDLVEFLRSRADVVAEEVSDDEVEVSLLGSYNSDAMRLELYLRVRAWEAGRRSTGVEIELVD*
Ga0066702_108438922	3300005575	Soil	MRLRLSNPALIPDLVEFLRSRADLIAEEVNDDEVEVSLLGSYNSDAMRLELYLRVRAWEAGRRSTSVEIELVD*
Ga0066656_106428911	3300006034	Soil	MRLRVSDPALVPELLEFLQSRLDVVAEQVKENEVSVSLLGSYALDPMRMELYLRVRAWEAGKRAKGVEVEFVD*
Ga0079222_102088735	3300006755	Agricultural Soil	MRLSVSDSAFVSELVEYLESDLDGVAQRVGEDEVEVSLLGSYREDALRMELYLRIRAWEAAQKG*
Ga0066660_102927462	3300006800	Soil	MRLRLSNPALIPDLVEFLRSRADLIAEEVSDDEVEVSLLGSYNSDAMRLELYLRVRAWEAGRRSTGVEIELVD*
Ga0066710_1011011302	3300009012	Grasslands Soil	VVADDAAALPAATLRPMRLRVSDPALVPELMEFLRSRLDVVAEQVGEDEVSVSLLGSYGSDSMRMALYLRVRAWEAAQRSRGVEVELLD
Ga0066710_1015827921	3300009012	Grasslands Soil	MRLRVTDPALVPELIEFLQARVDVVAAQVGDDEVEVSLLGSYNNDAMRMELYLRVRAWEAGRIAGGATVEIVD
Ga0066710_1038167061	3300009012	Grasslands Soil	LGWPPTTLRRCRRPHLSLRPMRLRVSDPALVPELLEFLHSRLDVVTEQITANEVNLCLLGSYALDSMRMELHLRVRAWEAAQRSKGVEVEFVD
Ga0066710_1039743651	3300009012	Grasslands Soil	MRLRVTDPVLVPELIEFLQARLDVVAAQVGAVEVEVSLLGSYNNDAMRMELYLRVRSWEAGRIAG
Ga0099829_101603521	3300009038	Vadose Zone Soil	MRLRVSNPALIPDLLEFLRSRVDVVAEEVSVDEVDVSLVGSYNANAMHLELYLRVRAWEAGRRSTGVEVELVD*
Ga0099829_106163682	3300009038	Vadose Zone Soil	MRLRVSNPALIPDLLEFLRSRMDVVAEQASEDEVDVSLVGSYNSDAMHMELYLRVRAWEAGRPSTGVEVELVD*
Ga0099829_114834711	3300009038	Vadose Zone Soil	MRLRVSNPALLPDLIEFLRSRLDAVAEQVSDDEVEVSLVGSYNADAMRMELYLRVRAWEAGRRAAAVEVELID*
Ga0099829_117380402	3300009038	Vadose Zone Soil	MRLRVSNPALIPDLLEFLRSRVDVVAEEVSANEVDVSLVGSYNADAMHMELYLRVRAWEAGRRSTGVEVELVD*
Ga0099830_101259542	3300009088	Vadose Zone Soil	MRLRVSDPALVPELLEFLHSRLDVVAEQITANEVSLSLLGSYASDAMRMELYLRVRAWEAAQRSRGVEVEFVD*
Ga0099830_111396311	3300009088	Vadose Zone Soil	MRLRLSNPALLPDLIEFLRSRLDAVAEQVSDDEVEVSLVGSYHADAMRMELYLRVRAWEAGRRAAAVEVELID*
Ga0099830_111737281	3300009088	Vadose Zone Soil	MRLRVSNPALLPDLIEFLRSRLDAVAEQVSDDEVQVSLVGSYNADAMRMELYLRVRAWEAGRRAAGVEVELID*
Ga0099828_116217751	3300009089	Vadose Zone Soil	MRLRVSNPALIPDLLEFLRSRVDVVAEEVSDDEVDVSLVGSYNSDAMHMELYLR
Ga0099827_101161622	3300009090	Vadose Zone Soil	MRLRVSDPALVPELLEFLCSRLDVVAEQITANEMSLSLLGSYASDAMRMELCVRVRASESGPALKGVAELYLRSLAGTRSLS*
Ga0099827_104931411	3300009090	Vadose Zone Soil	ALIPDLLEFLRSRVDVVAEEDGENEVEESLVGSYNSDAMRMELYLRVRAWEAGRRSTGVEVELVD*
Ga0099827_109427571	3300009090	Vadose Zone Soil	MRLRVSNPALIPDLLEFLRSRVDLVAEEVGDDEVDVSLVGSYNADAMNIELYLRVRAWEAGRRSTGVEVELGD*
Ga0066709_1006048972	3300009137	Grasslands Soil	MRLRVSNPALAPDLLEFLRSRVDVVAEEVSDDEVDASLVGSYSSDAMRIELYLRVRAWEAGRRSPGVEVELVD*
Ga0066709_1007251622	3300009137	Grasslands Soil	VVADDAAALPAATLRPMRLRVSDPALVPELMEFLRSRLDVVAEQIGEDEVSVSLLGSYGSDSMRMALYLRVRAWEAAQRSRGVEVELLD*
Ga0066709_1022573382	3300009137	Grasslands Soil	MRLRVTDPALVPELIEFLQARVDVVAAQVGDDEVEVSLLGSYNNDAMRMELYLRVRAWEAGRIAGGATVEIVD*
Ga0066709_1030973161	3300009137	Grasslands Soil	MRVRVTDPALLSDLVELLRLRVDAISDQVSEDEVEVSLLGSWNSDAMRIELYLRMGAWEAGRRAAARAEIVE*
Ga0066709_1033570152	3300009137	Grasslands Soil	MRLRVCNPVLIPDLLEFLRSRVDVVAEEVSENEVDVSLVGSYNADAMDIELYLRVRAWEAGRRSTGVEVELVD*
Ga0126304_101607262	3300010037	Serpentine Soil	MRLRLSDPGLVPELLEFLQTRLSVVAEQVAPDEIEVSLLGSYGADGMRIVLDLLVRAWEAGRPGSAGSVELLD*
Ga0126312_109864472	3300010041	Serpentine Soil	MHLRVSDPALVPDLLEFLRSRLDVVAEQTAADEVSLSLLGSYAEDAMRMELYLRVRAWEAGRRSSRVEVEILD*
Ga0134071_107754871	3300010336	Grasslands Soil	MRLRVCNPALIPDLLEFLRSRVDVVAEEVSDDEVDASLVGSYNSDAMRIELYLRVRAWEAGRRSPGVEVELVD*
Ga0138514_1000004284	3300011003	Soil	MRLRVSDPALVPELLEFLQSRLDVVAEQVEANEVTVSLLGSYALDPMRMELYLRVRAWEAGQRAKGVEVEFVD*
Ga0137392_101692633	3300011269	Vadose Zone Soil	MRLRVSNRALLPDLIEFLRSRLDAVAEQVSDDEVEVSLVGSYNADAMRMELYLRVRAWEAGRRAAGVEVELID*
Ga0137392_104362622	3300011269	Vadose Zone Soil	MRPRVSDPALVPELLEFLHSRLDVVAEQITANEVSLSLLGSYASDAMRMELYLRVRAWEAAQRSRGVEVEFVD*
Ga0137392_111130841	3300011269	Vadose Zone Soil	NPALIPDLLEFLRSRVDVVAEEVSVDEVDVSLVGSYNANAMHMELYLRVRAWEAGRRSTGVEVELVD*
Ga0120164_10365231	3300011987	Permafrost	MRLRVSNPALIPDLLEFLRSRVDVVAEEVSDDEVEVSLVGSYNSDALRMELYLRVRAWEAGRRSTGVEVELVD*
Ga0120153_10290343	3300011991	Permafrost	MRLRVTDPALVPELVEFLQARLDVVAAQVGDDEVEVSLLGSYSNDAMRMELYLRVRAWEAGRIAGGATAXXXSR*
Ga0120146_10054101	3300011992	Permafrost	MRLRVTDPALVPELVEFFQARLDVVAAQVGDDEVEVSLLGSYSNDAMRMELYLRVRAWEVGRIAGGATVEIVD*
Ga0120146_10330644	3300011992	Permafrost	MRLRVSNPALIPDLLEFLRSRVDVVAEEVSDDEVEVSLVGSYNSDALRMELY
Ga0120157_10136304	3300011994	Permafrost	MRLRVTDPALVPELVEFFQARLDVVAAQVGDDEVEVSLLGSYSNDAMRMELYLRVRAWEAGRIAGGATAEIVD*
Ga0120162_11262701	3300011997	Permafrost	MRLRVSNPALIPDLLEFLRSRVDVVAEEVSDDEVDVSLVGSYNSDAQRMELYLRVRAWEAGRRSTGVEVELVD*
Ga0120148_10147702	3300011999	Permafrost	MRLRVSNPALLPDLLEFLRSRVDVVAEEVSDDEVEVSLVGSYNSDALRMELYLRVRAWEAGRRSTGVEVELVD*
Ga0120167_10358391	3300012001	Permafrost	MRLRVTDPALVPELVEFLQARLDVVAAQVGDDEVEVSLLGSYSNDAMRMELYLRVRAWEAGRIAGGATAEIVD*
Ga0120163_10838702	3300012003	Permafrost	MRLRVSDPAFVPELLEFLRSRLDVVAEQVTEKEVDLSLLGSYAEDAMRMELYLRVRAWEAGQRTKGVEVEFVD*
Ga0120174_11075891	3300012008	Permafrost	MRLRVTDPALVPELVEFFQARLDVVAAQVGDDEVEVSLLGSYSNDAMRMELYLRVRAWEVGRIAGGATAEIVD*
Ga0120118_11034381	3300012010	Permafrost	MRLRVSNPALIPDLLEFLRSRVDVVAEEVSDDEVEVSLVGSYNSDAQRMELYLRVRAWEAGRRSTGVEVELVD*
Ga0120118_11560482	3300012010	Permafrost	MRLRVSDPALVPELLEFLHSRLDVVAEQTTANEVSLSLLGSYASDAMRMELYLRVRAWEAAQRSKGVEVEFV
Ga0120152_11295861	3300012011	Permafrost	MRLRVTDPALVPELVEFFQARLDVVAAQVGDDEVEVSLLGSYSNDAMRMELYLRVRAWEAGRIAGGATA
Ga0120152_11982981	3300012011	Permafrost	MRLRVSNPALIPDLLEFLRSRVDVVAEEVSDDEVDVSLVGSYNSDAMHMELYLRVRAWEAGRRSTGVEVELVD*
Ga0120139_10181963	3300012019	Permafrost	MRLRVSNPALIPDLLEFLRSRVDVVAEEVSDDEVEVSLVGSYNSDALRMELYLRVRAWEAGRRSAGVEVDLVD*
Ga0120139_10899161	3300012019	Permafrost	MRLRVSDPALVPELLEFLHSRLDVVAEQTTANEVSLSLLGSYASDAMRMELYLRVRAWETAQRSRGVRV
Ga0137388_108918581	3300012189	Vadose Zone Soil	MRLRLSDPALVRELLGFLHSRLDVVAEQITANEVSLSLLGSYASDAMRMELYLRVRAWEAAQHSKGVEVEFVD*
Ga0137364_101506811	3300012198	Vadose Zone Soil	MRLRVGNPALIPDLLEFLRSRVDVVAEEVSDDEVEVSLVGSYNSDAMHMELYLRIRAWEGGRRSTGVEV
Ga0137383_107971612	3300012199	Vadose Zone Soil	MRLRVGNPALIPDLLEFLRSRVDVVAEEVSDDKVEVSPYGSYNADAMNIELYLRVRAWEA
Ga0137382_106625301	3300012200	Vadose Zone Soil	MRLRVGNPALIPDLLEFLRSRVDVVAEEVSDDEVEVSLVGSYNSDAMHMELYLRIRAWEAGRRTTGV
Ga0137365_102394762	3300012201	Vadose Zone Soil	MRLRVSDPALVPELLEFLHSRLDVVTEQITANEVNLCLLGSYALESMRMELHLRVRAWEVAQRSKGVEVEFVD*
Ga0137374_100431186	3300012204	Vadose Zone Soil	MRIRVSDPALVPELVEFLRSRDVVAEQITADEVSLSLQGSYASDVLQMELYLRVRAWEAGQRSKGVEVEFVD*
Ga0137374_100637911	3300012204	Vadose Zone Soil	MRLRVSDPALVPELLEFLHSRLDVVAEQVTANEVSLSLLGSYAPDALRMELYLRVRAWESAQRSRGVEVEFVD*
Ga0137380_110505872	3300012206	Vadose Zone Soil	MRLRVSNPALIPDLLEFLRSRADVVVEEVSDDEVDVSLVGSYNSDAMHMELFLRVRAWEAGRRSTGVEVELVDC*
Ga0137376_100550162	3300012208	Vadose Zone Soil	MRLCVGNPALIPDLLEFLRSRVDVVAEEVSDDEVEVSLVGSYNSDAMHMELYLRIRAWEAGRRSTGVEVELVD*
Ga0137376_103024892	3300012208	Vadose Zone Soil	MRLRLSNPALIPELVEFLRSRADVIAEEVSDDEVEVSLLGSYNSDAMRMQLYLRVRAWEAGRRSTGVEIELVD*
Ga0137376_114536302	3300012208	Vadose Zone Soil	MRLRVSNPALIPDLLEFLRSRVDVVAEEVSDNEVDVSLVGSYNADAMHIELYLRVRAWEAGRRSTGVEVELVD*
Ga0137379_103530612	3300012209	Vadose Zone Soil	MRLRVSNPALLPDLIEFLRSRLDAVAEQVSDDEVEVSLVGSYNADAMRMDLYLRVRAWEAGRRAAGVEVELID*
Ga0137379_104713002	3300012209	Vadose Zone Soil	MRLRVSNPALIPDLLEFLRARADVVVEEVSDDEVDVSLVGSYNSDAMHMELFLRVRAWEAGRRSTGVEVELVDC*
Ga0137377_102468913	3300012211	Vadose Zone Soil	MRLCVGNPALIPDLLEFLRSRVDVVAEEVSDDEVEVSLVGSYNSDAMHMELYLRIRAWEAGR
Ga0137377_104107672	3300012211	Vadose Zone Soil	MRLRVSNPALIPDLLEFLRSRVDVVAEEVSDDEVDVSLLGSYNADAMNIELYLRVRAWEAGRRSTGVEVELVD*
Ga0137387_111706421	3300012349	Vadose Zone Soil	MRLRVSNPALIPDLLEFLRSRADVVVEEVSDDEVDVSLVGSYNSDAMHMELFLRVRAWEAGRRST
Ga0137372_100185402	3300012350	Vadose Zone Soil	MRLRVSNPALLPDLIEFLRSRLDAVAEQVSDDQVEVSLVGSYNADAMRMELYLRVRAWEAGRRAAGVEVELID*
Ga0137367_100839501	3300012353	Vadose Zone Soil	MRLRVSNPALLPDLIEFLRSRLDAVAEQVSDDEVEVSLVGSYNADAMRMELYLRVRAWEAGRRAARVEVELID*
Ga0137371_110259791	3300012356	Vadose Zone Soil	MRLRISDPALVPELLEFLHSRLDVVAEQITANEVRLSLLGSYASDAMRLELYLRLRAWATAQRSRDVEVEFVG*
Ga0137368_100911663	3300012358	Vadose Zone Soil	MRIRVSDPALVPELVEFLRSRDVVAEQITADEVSLSLQGSYASDVLQMELYLRVRAWEAGQRSTGVEVEFVD*
Ga0137368_101051591	3300012358	Vadose Zone Soil	MRLRVSDPALVPELLEFLHSRLDVVAEQITANEVSLSLLGSYAPDALRMELYLRVRAWESAQRSRGVEVEFVD*
Ga0137385_113877511	3300012359	Vadose Zone Soil	MRLRLSEPALIPDLLEFLRSRADVVAEEVSDDEVEVSLVGSYNSDAMRMELYLRVRAWEAGRRSTGVGIELVD*
Ga0137375_1002633010	3300012360	Vadose Zone Soil	MRLRVSNPALLPDLIEFLRSRLDAVAEQVSDDQVEVSLVGSYNADAMRMELYLRVRAWEAGRRAARVEVELID*
Ga0137375_112873411	3300012360	Vadose Zone Soil	MRLRVSDPALVLELLEFLHSRLDVVAEQITANEVSLSLLGSYASDAMRMELYLRVRAWESAQRSRGVEVEFVDH*
Ga0137390_114160162	3300012363	Vadose Zone Soil	MRLRVSNRALLPDLIEFLRSRLDAVAEQVSDHEVEVSLVGSYNADAMRMELYLRVRAWEAGRRAAGVEVELID*
Ga0137390_115262131	3300012363	Vadose Zone Soil	MRLRVSNPALIPDLLEFLRSRVDVVAEEVSANEVDVSLVGSYSADAMHMELYLRVRAWEAGRRSTGVEVELVD*
Ga0137390_117194422	3300012363	Vadose Zone Soil	RPRVSDPALVPELLEFLHSRLEVVAEQITANEVSLSLLGSYASDAMRMELYLRVRAWEAAQRSRGVEVEFVD*
Ga0137395_110079851	3300012917	Vadose Zone Soil	MRLRLSNPALLPDLIEFLRSRLDAVAEQVSDDEVEVSLVGSYNADAMRMELYLRVRAWEAGRRAAGVEVELID*
Ga0137404_110737302	3300012929	Vadose Zone Soil	MRLRVSNPALVPDLLEFLRSRADVVAEEVSNDEVDVSLLGSYNDDAMNIELYLRVRAWEAGRRSTGIEVELVD
Ga0120150_11089881	3300013294	Permafrost	MRLRVSDPALVPELLEFLHSRLDVVAEQITANEVSLSLLGSYASDAMRMELYLRVRAWEAAQRANERRGGVRRLG
Ga0120154_100124911	3300013501	Permafrost	MRLRVTDPALVPELVEFFQARLDVVAAQVGDDEVEVSLLGSYSNDAMRMELYLRVRAWEVGRIAGGATVEIGD*
Ga0120154_10454071	3300013501	Permafrost	MRLRVSNPALLPDLLEFLRSRVDVVAEEVSDDEVEVSLVGSYNSDAQRMELYLRVRAWEAGRRSAGVEVELVD*
Ga0120179_11044501	3300013763	Permafrost	MRLRVTDPALVPELVEFFQARLDVVAAQVGDDEVEVSLLGSYSNDAMRMELYLRVRAWE
Ga0120111_11382401	3300013764	Permafrost	MRLRVSNPALLPDLLEFLRSRLDVVAEEVSDDEVEVSLVGSYNSDALRMELYLRVRAWEAGRRSAGVEVELVD*
Ga0120172_10027516	3300013765	Permafrost	MRLRVTDPALVPELVEFFQARLDVVAAQVGDDEVEVSLLGSYSNDAMRMELYLRVRAWEA
Ga0120155_10764643	3300013768	Permafrost	MRLRVTDPALVPELVEFFQARLDVVAAQVGDDEVEVSLLGSYSNDAMRMELYLRVRAWEAGRIAGGATAEI
Ga0120158_100045197	3300013772	Permafrost	MRLRVSDPALVPELLEFLHSRLDVVAEQITANEVSLSLLGSYASDAMRMELYLRVRAWEAAQRSAAVALWRNRDTLALYAW*
Ga0120158_100255971	3300013772	Permafrost	MRLRVSDPALVPELLEFLHSRLDVVAEQTTANEVSLSLLGSYASDAMRMELYLRVRAWEAAQRSKGVEVEFVD*
Ga0120158_100566893	3300013772	Permafrost	MRLRVSIPDLLEFLRSRLDVVAEEVSDGEVEVSLVGSYNADAMHMELYLRVRAWEAGRRSTGVEVELVD*
Ga0120173_10309272	3300014031	Permafrost	MRLRVTDPALVPELVEFFQARLDVVAAQVGDDEVEVSLLGSYSNDAMRMELYLRVRAWEAGRIAGGATPAVID*
Ga0134075_101687371	3300014154	Grasslands Soil	LRVSDPALVPELLEFLHSRLDVVTEQITANEVNLCLLGSYALDSMRIELHLRVRAWEAAQRSKGVEVEFVD*
Ga0120170_10684941	3300014823	Permafrost	MRLRVSNPALIPDLLEFLRSRLDVVAEEVSDDEVEVSLVGSYNSDAQRMELYLRVRAWEAGRRSTGVEVELVD*
Ga0120171_10876601	3300014827	Permafrost	MRLRVSDPALVPELLEFLHSRLDVVAEQTTANEVSLSLLGSYASDAMRMELYLRVRAWEAAQRPRGVEVEFVD*
Ga0184605_104570962	3300018027	Groundwater Sediment	MRLRVSDPALVPELLEFLQTRLDVVAHQITDNEVEISLLGSYAEDPMRMELYLRVRAWEAGQHAKGVEVEFID
Ga0184618_102765682	3300018071	Groundwater Sediment	MRLRVSNPALIPDLLEFLRSRVDVVAEEASDNEVDVSLVGSYNADAMNIELYLRVRAWEAGRRSTGVEVELVD
Ga0184618_104325101	3300018071	Groundwater Sediment	MRLRVGNPALIPDLLEFLRSRVDVVAEEVSDDEVDVSLVGSFNSDAMRMELELRVRAWEAGRRSAGVEVE
Ga0066667_111647441	3300018433	Grasslands Soil	MRLRVSDPALVPELLEFLHSRLDVVTEQITANEVNLCLLGSYALDSMRMELHLRVRAWEAAQRSKGVEVEFVD
Ga0193751_10068971	3300019888	Soil	LRLMRLRVSNPALLPDLLEFLRSRVDVVAEEVSDDEVEVSLVGSYNSDALRMELELRVRAWEAGRRSAGVEVELVD
Ga0210378_101029682	3300021073	Groundwater Sediment	MRLRVSDPELVPELLEFLKLRVDIVANQITENEVDLSLLGSYSEDAMRMELYLRVRAWEARQRASGVEVEFVD
Ga0210382_102933832	3300021080	Groundwater Sediment	MRLRVSDPALVPELLEFLQSRLDVVAEQVEANEVSVSLLGSYALDPMRMELYLRVRAWEAGQRAKGVEVEFVD
Ga0210382_105001031	3300021080	Groundwater Sediment	MRLRVGNPALIPDLLEFLRSRVDVVAEEVSDDEVEVSLVGSYNSDAMHMELYLRIRAWEAGRRSTGVEIE
Ga0193719_101916472	3300021344	Soil	MRLRVSDPALVPELLEFLQSRLDVVAEQVKANEVSVSLLGSYALDPMRMELYLRVRAWEAGQRAKGVEVEFVD
Ga0207646_100099472	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MRLRVSNPALIPDLLEFLRSRMDVVAEEVSADEVEVSLVGSYNSDAMRLELYLRVRAWEAGRRSTGVEVELVD
Ga0207646_106135912	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MRLRVSNPALIPDLLEFLRSRADVVAEEVSVNEVDVSLVGSYNADAMHMELYLRVRAWEAGRRSTGVEVELVD
Ga0207665_108809062	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	SLRLMRLRVSNPALIPDLLEFLRSRVDVVAEEVSDDEVEVSLVGSYNSDAMHMELYLRIRAWEAGCRSTGVEYE
Ga0209059_10756112	3300026527	Soil	MRLRVSDTTFVPELVAYLESDLDGVAQRVGDDEVEVSLLGSYREDTLRMELYLRIRAWEAGRRDRGVVVDVLE
Ga0209577_101156141	3300026552	Soil	MRLRLSNPALIPDLVEFLRSRADLIAEEVNDDEVEVSLLGSYNSDAMRMELYLRVRAWEAGRRSTGVEIELVD
Ga0209701_102312803	3300027862	Vadose Zone Soil	PPTTLRHCRRPHLSLRPMRLRVSDPALVPELLEFLHSRLDVVAEQITANEVSLSLLGSYASDAMRMELYLRVRAWEAAQRSRGVEVEFVD
Ga0209283_101740452	3300027875	Vadose Zone Soil	MRLRVSNPALIPDLLEFLRSRMDVVAEQASEDEVDVSLVGSYNSDAMHMELYLRVRAWEAGRPSTGVEVELVD
Ga0209283_105549622	3300027875	Vadose Zone Soil	MRLRVSNPALIPDLLEFLRSRVDVVAEEVSANEVDVSLVGSYNADAMHMELYLRVRAWEAGRRSTGVEVELVD
Ga0209590_102383461	3300027882	Vadose Zone Soil	MRLRVSDPALVPELLEFLCSRLDVVAEQITANEMSLSLLGSYASDAMRMELCVRVRASESGPALKGVAELYLRSLAGTRSLS
Ga0209590_103974221	3300027882	Vadose Zone Soil	MRLRVSNPALIPDLLEFLRSRVDVVAEEVGEDEVDVSLVGSYNSDAMRMELYLRVRAWEAGRRSTGVEVELVD
Ga0307282_103392491	3300028784	Soil	MRLRVSNPALIPDLLEFLRSRVDVVAEGVSDDEVEVSLVGSYNSDAMHMELYLRIRAWEAGRRSTGVEVELVD
Ga0307312_105451451	3300028828	Soil	MRIRVSNPVLIPDLLEFLRSRVDVVAEEVSDDEVDVSLVGSYNSDAMRMELELRVRAWEAGRRSVGVEVELVD
Ga0307278_100983861	3300028878	Soil	MRLRVSDPELVPELLEFLKLRVDIVANQITENEVDLSLLGSYSEDAMRMELYLRVRAWEAGQRAKGVEVEFVD
Ga0307278_105162801	3300028878	Soil	MTLRRVSAAPSSLRPMRLRVSDPALVPELLEFLQSRLDVVAEQVTANEVSLSLLGSYASDAMRMELYLRVRAWEAGQRSKGVEVEFVD
Ga0307304_106027101	3300028885	Soil	AATSLRLMRIRVSNPVLIPDLLEFLRSRVDVVAEEVSDDEVDVSLVGSYNSDAMHMELYLRIRAWEAGRRSTGVEVELVD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F071113

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences