Metagenome / Metatranscriptome Family F071072

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F071072
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	61 residues
Representative Sequence	MASPEISAKPDLGSLRIHDGQRSQSKMGKRVFYASIPVLIFAGIVAAAYAFRSQKPV
Number of Associated Samples	82
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.36 %
% of genes near scaffold ends (potentially truncated)	95.90 %
% of genes from short scaffolds (< 2000 bps)	91.80 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (69.672 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (40.164 % of family members)
Environment Ontology (ENVO)	Unclassified (38.525 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.459 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.53% β-sheet: 0.00% Coil/Unstructured: 56.47%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF04879	Molybdop_Fe4S4	20.49
PF10518	TAT_signal	18.03
PF00384	Molybdopterin	3.28
PF03713	DUF305	2.46
PF14559	TPR_19	1.64
PF13646	HEAT_2	1.64
PF01738	DLH	1.64
PF02222	ATP-grasp	0.82
PF13414	TPR_11	0.82
PF12704	MacB_PCD	0.82
PF13561	adh_short_C2	0.82
PF01292	Ni_hydr_CYTB	0.82
PF13181	TPR_8	0.82
PF01965	DJ-1_PfpI	0.82
PF13533	Biotin_lipoyl_2	0.82
PF16576	HlyD_D23	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG3544	Uncharacterized conserved protein, DUF305 family	Function unknown [S]	2.46
COG1969	Ni,Fe-hydrogenase I cytochrome b subunit	Energy production and conversion [C]	0.82
COG2864	Cytochrome b subunit of formate dehydrogenase	Energy production and conversion [C]	0.82
COG3038	Cytochrome b561	Energy production and conversion [C]	0.82
COG3658	Cytochrome b subunit of Ni2+-dependent hydrogenase	Energy production and conversion [C]	0.82
COG4117	Thiosulfate reductase cytochrome b subunit	Inorganic ion transport and metabolism [P]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.67 %
Unclassified	root	N/A	30.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.67 %
Unclassified	root	N/A	30.33 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.67 %
Unclassified	root	N/A	30.33 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	59.84 %
Unclassified	root	N/A	30.33 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.33 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	27.05 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	21.31 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.64 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.33 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.05 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	15.57 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	3.28 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.46 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.82 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.82 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.33 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.05 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	15.57 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.46 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	2.46 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.82 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.82 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.33 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.05 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	15.57 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	2.46 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.64 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.82 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.82 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.33 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.05 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	15.57 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1.64 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.64 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.82 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.82 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.82 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c0344110	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300001154\|JGI12636J13339_1044352	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
3300001593\|JGI12635J15846_10761880	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	556	Open in IMG/M
3300001867\|JGI12627J18819_10434236	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	536	Open in IMG/M
3300002245\|JGIcombinedJ26739_101721036	Not Available	526	Open in IMG/M
3300002914\|JGI25617J43924_10056370	All Organisms → cellular organisms → Bacteria → Acidobacteria	1433	Open in IMG/M
3300002914\|JGI25617J43924_10064304	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1340	Open in IMG/M
3300002914\|JGI25617J43924_10093160	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1083	Open in IMG/M
3300002914\|JGI25617J43924_10131749	All Organisms → cellular organisms → Bacteria → Acidobacteria	873	Open in IMG/M
3300002914\|JGI25617J43924_10156638	Not Available	778	Open in IMG/M
3300002917\|JGI25616J43925_10140050	Not Available	973	Open in IMG/M
3300002917\|JGI25616J43925_10242869	Not Available	678	Open in IMG/M
3300002917\|JGI25616J43925_10346103	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	550	Open in IMG/M
3300004633\|Ga0066395_10631197	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	630	Open in IMG/M
3300005167\|Ga0066672_10403636	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	894	Open in IMG/M
3300005171\|Ga0066677_10284246	Not Available	944	Open in IMG/M
3300005446\|Ga0066686_10113362	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1759	Open in IMG/M
3300005447\|Ga0066689_10277413	Not Available	1036	Open in IMG/M
3300005454\|Ga0066687_10879647	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300005553\|Ga0066695_10284329	Not Available	1044	Open in IMG/M
3300005553\|Ga0066695_10898038	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	506	Open in IMG/M
3300005569\|Ga0066705_10834692	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	548	Open in IMG/M
3300005921\|Ga0070766_10615710	Not Available	730	Open in IMG/M
3300006046\|Ga0066652_100951555	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	817	Open in IMG/M
3300006794\|Ga0066658_10453170	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	698	Open in IMG/M
3300006806\|Ga0079220_10128642	All Organisms → cellular organisms → Bacteria → Acidobacteria	1363	Open in IMG/M
3300006806\|Ga0079220_10623370	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	772	Open in IMG/M
3300006914\|Ga0075436_100094123	All Organisms → cellular organisms → Bacteria	2084	Open in IMG/M
3300007265\|Ga0099794_10328544	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	794	Open in IMG/M
3300007265\|Ga0099794_10452355	Not Available	673	Open in IMG/M
3300007265\|Ga0099794_10563566	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	602	Open in IMG/M
3300009038\|Ga0099829_10090392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2363	Open in IMG/M
3300009038\|Ga0099829_10625649	Not Available	895	Open in IMG/M
3300009038\|Ga0099829_11655879	Not Available	527	Open in IMG/M
3300009088\|Ga0099830_10288248	Not Available	1308	Open in IMG/M
3300009088\|Ga0099830_10400431	Not Available	1110	Open in IMG/M
3300009088\|Ga0099830_10834678	Not Available	761	Open in IMG/M
3300009088\|Ga0099830_11208425	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
3300009088\|Ga0099830_11444664	Not Available	572	Open in IMG/M
3300010322\|Ga0134084_10045955	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1271	Open in IMG/M
3300010322\|Ga0134084_10234784	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	656	Open in IMG/M
3300010335\|Ga0134063_10068423	All Organisms → cellular organisms → Bacteria	1576	Open in IMG/M
3300010358\|Ga0126370_12082314	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	556	Open in IMG/M
3300010359\|Ga0126376_10346882	All Organisms → cellular organisms → Bacteria → Acidobacteria	1314	Open in IMG/M
3300010359\|Ga0126376_10886285	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300010361\|Ga0126378_10179031	All Organisms → cellular organisms → Bacteria → Acidobacteria	2184	Open in IMG/M
3300010361\|Ga0126378_10496700	Not Available	1335	Open in IMG/M
3300010361\|Ga0126378_10998177	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	941	Open in IMG/M
3300010366\|Ga0126379_10322795	All Organisms → cellular organisms → Bacteria → Acidobacteria	1561	Open in IMG/M
3300010398\|Ga0126383_10409539	All Organisms → cellular organisms → Bacteria	1395	Open in IMG/M
3300011270\|Ga0137391_10179834	All Organisms → cellular organisms → Bacteria → Acidobacteria	1843	Open in IMG/M
3300011271\|Ga0137393_10280407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1417	Open in IMG/M
3300011271\|Ga0137393_10897719	Not Available	756	Open in IMG/M
3300011271\|Ga0137393_10917065	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	747	Open in IMG/M
3300012096\|Ga0137389_11421111	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	589	Open in IMG/M
3300012096\|Ga0137389_11789699	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300012189\|Ga0137388_10818729	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300012189\|Ga0137388_11226021	Not Available	688	Open in IMG/M
3300012189\|Ga0137388_11244206	Not Available	682	Open in IMG/M
3300012199\|Ga0137383_10224334	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1377	Open in IMG/M
3300012200\|Ga0137382_10534482	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	834	Open in IMG/M
3300012200\|Ga0137382_10813858	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	672	Open in IMG/M
3300012209\|Ga0137379_11033616	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	727	Open in IMG/M
3300012209\|Ga0137379_11279778	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	639	Open in IMG/M
3300012210\|Ga0137378_10064437	All Organisms → cellular organisms → Bacteria → Acidobacteria	3318	Open in IMG/M
3300012211\|Ga0137377_10343939	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1428	Open in IMG/M
3300012211\|Ga0137377_11911829	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300012361\|Ga0137360_10241829	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	1478	Open in IMG/M
3300012361\|Ga0137360_10256108	Not Available	1439	Open in IMG/M
3300012361\|Ga0137360_11320021	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	623	Open in IMG/M
3300012362\|Ga0137361_10547363	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M
3300012363\|Ga0137390_10293175	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1610	Open in IMG/M
3300012685\|Ga0137397_10404524	Not Available	1017	Open in IMG/M
3300012685\|Ga0137397_10475007	Not Available	931	Open in IMG/M
3300012918\|Ga0137396_10180809	All Organisms → cellular organisms → Bacteria	1546	Open in IMG/M
3300012918\|Ga0137396_10958918	All Organisms → cellular organisms → Bacteria → Acidobacteria	623	Open in IMG/M
3300012922\|Ga0137394_11435963	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300012925\|Ga0137419_11256715	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300012925\|Ga0137419_11938415	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	506	Open in IMG/M
3300014150\|Ga0134081_10179262	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	710	Open in IMG/M
3300015052\|Ga0137411_1030971	Not Available	1341	Open in IMG/M
3300015052\|Ga0137411_1068339	All Organisms → cellular organisms → Bacteria	2235	Open in IMG/M
3300016341\|Ga0182035_11511741	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	604	Open in IMG/M
3300016404\|Ga0182037_10048945	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	2813	Open in IMG/M
3300020170\|Ga0179594_10212251	Not Available	726	Open in IMG/M
3300020581\|Ga0210399_11082249	Not Available	642	Open in IMG/M
3300020583\|Ga0210401_11074914	Not Available	663	Open in IMG/M
3300021088\|Ga0210404_10168332	Not Available	1159	Open in IMG/M
3300021559\|Ga0210409_10494746	Not Available	1086	Open in IMG/M
3300021559\|Ga0210409_10542741	All Organisms → cellular organisms → Bacteria	1028	Open in IMG/M
3300021560\|Ga0126371_11570747	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	785	Open in IMG/M
3300021560\|Ga0126371_13540922	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300024330\|Ga0137417_1428301	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1377	Open in IMG/M
3300026301\|Ga0209238_1268768	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	511	Open in IMG/M
3300026310\|Ga0209239_1191338	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	753	Open in IMG/M
3300026323\|Ga0209472_1212071	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	643	Open in IMG/M
3300026371\|Ga0257179_1018914	Not Available	785	Open in IMG/M
3300026515\|Ga0257158_1024805	Not Available	1028	Open in IMG/M
3300026548\|Ga0209161_10001131	All Organisms → cellular organisms → Bacteria → Acidobacteria	21938	Open in IMG/M
3300026551\|Ga0209648_10017072	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6331	Open in IMG/M
3300026551\|Ga0209648_10607804	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300027061\|Ga0209729_1032624	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	649	Open in IMG/M
3300027070\|Ga0208365_1039983	Not Available	624	Open in IMG/M
3300027645\|Ga0209117_1083739	All Organisms → cellular organisms → Bacteria → Acidobacteria	890	Open in IMG/M
3300027645\|Ga0209117_1124872	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	686	Open in IMG/M
3300027846\|Ga0209180_10291256	All Organisms → cellular organisms → Bacteria → Acidobacteria	936	Open in IMG/M
3300027862\|Ga0209701_10448647	Not Available	710	Open in IMG/M
3300028536\|Ga0137415_10517313	All Organisms → cellular organisms → Bacteria → Acidobacteria	1002	Open in IMG/M
3300028536\|Ga0137415_10698496	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	827	Open in IMG/M
3300028536\|Ga0137415_11188159	All Organisms → cellular organisms → Bacteria → Acidobacteria	577	Open in IMG/M
3300028884\|Ga0307308_10206104	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	942	Open in IMG/M
3300030991\|Ga0073994_12087789	Not Available	506	Open in IMG/M
3300031718\|Ga0307474_10264400	Not Available	1320	Open in IMG/M
3300031736\|Ga0318501_10560218	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	626	Open in IMG/M
3300031744\|Ga0306918_11566672	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	502	Open in IMG/M
3300031753\|Ga0307477_10164354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1547	Open in IMG/M
3300031754\|Ga0307475_10561149	Not Available	915	Open in IMG/M
3300031835\|Ga0318517_10290736	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	738	Open in IMG/M
3300031890\|Ga0306925_10025239	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	6000	Open in IMG/M
3300031962\|Ga0307479_11878816	Not Available	549	Open in IMG/M
3300032059\|Ga0318533_10002751	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	9374	Open in IMG/M
3300032261\|Ga0306920_100780413	Not Available	1404	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.18%
Host-Associated	Host-Associated	0.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.18%
Plants	Host-Associated → Plants	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	90.16%
Loam	Environmental → Terrestrial → Soil → Loam	9.02%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	52.46%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	19.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.20%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.64%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	40.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.84%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	9.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.02%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.20%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.10%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.28%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.28%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.82%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.82%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001154	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026371	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-B	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027061	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027070	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_03441102	2228664022	Soil	MATPPISARPDLGSLRIHDGQRSRSSMGKRIVYAAIPVLLFAGIVVAAFAFRNQKAVVEV
JGI12636J13339_10443521	3300001154	Forest Soil	MATPPISAKPDLGSLRIGDGQRKSSGMGKRVMYAAIPVLIFAGIVAAAYAFRSQKPVVEVAAAAKPEA
JGI12635J15846_107618801	3300001593	Forest Soil	MATPPISAKPDLGSLRIGDGQRKSSGMGKRVMYAAIPVLIFAGIVAAAYAFRSQKPVVEVAAAAK
JGI12627J18819_104342362	3300001867	Forest Soil	MSNYGESLVMPADSSKPDLGSLRIHDGQRAKSGMGRRVLYASLPVLIFGAIVAAAFALRNQKPLVEVATAAKP
JGIcombinedJ26739_1017210362	3300002245	Forest Soil	MATPANSPRHDLGSLRIGEGQRKGSGMGKRVLYPAIPVLIFAGIVAGAYAL
JGI25617J43924_100563702	3300002914	Grasslands Soil	MASPQVSAKPDLGSLRIHDGQRSQSKMGKRIFYASIPVLIFAGIVAAAYAFRSQKPVVEVVT
JGI25617J43924_100643042	3300002914	Grasslands Soil	MATPANLPKPDLSALRIDDRLRSQSKMGKRIFYASIPVLIFAGIVAAAYAFRNQRPMVEVATAA
JGI25617J43924_100931601	3300002914	Grasslands Soil	MASSQVSAKPDLGSLRIHDGQRSQSRMGRRVLYASIPVLIFASIVVAAYAFRSQKPVVEVATAAKP
JGI25617J43924_101317492	3300002914	Grasslands Soil	MASPQISAKPDLGSLRIHDGQRSQSKMGKRIFYASIPVLIFAGIVAAAYAF
JGI25617J43924_101566382	3300002914	Grasslands Soil	MATLPNSARPDLGSLRIGEGQRKGSGMGKRVIYAAIPVVIFAGIVV
JGI25616J43925_101400501	3300002917	Grasslands Soil	MATPPVSARPDLGSLRIHDGQRSQSKMGKRIIYASIPVLIFAGIVAASYAFR
JGI25616J43925_102428693	3300002917	Grasslands Soil	MVLMATPANLPKPDLSALRIDDRLRSQSKMGKRIFYASIPVLIFAGIVAAAYAFRNQRPMVEV
JGI25616J43925_103461031	3300002917	Grasslands Soil	MPADSLKPDLGSLRIHDGQRSKSGMGKRMFYAAIPVVIFGAIVATAFALRNQKPV
Ga0066395_106311971	3300004633	Tropical Forest Soil	MRDATETLVMPVDSSKPDLGSLRIHDGQRAKSGMGKRIMYASIPVLIFGAIVATAFALRS
Ga0066672_104036361	3300005167	Soil	MPVDSSKPDLGSLRIHDGQRAKSGMGKRVVYASIPVLIFGAIVATAFALRSQKPVVEVAMAAKPDSEGPQTALN
Ga0066677_102842463	3300005171	Soil	LSDYGESLVMPADSPKPDLGSLRIHDRQRSKSGMGKRVFYAAIPVLIFAAIVATAFA
Ga0066686_101133621	3300005446	Soil	MASPQISAKPDLGSLRIHDGQRSQSKMGKRIFYASIPVLIFAGIVAGAYALRSQ
Ga0066689_102774132	3300005447	Soil	MATPPISARPDLGSLRIHDGQRSESGMGKRIVYAAIPVLLFAGIVVAAFA
Ga0066687_108796472	3300005454	Soil	MPVDSSKPDLGSLRIHDGQRAKSGMGKRVVYASIPVLVFGAIVATAFALR
Ga0066695_102843291	3300005553	Soil	MATPSVTPKADLGSLRIHDGERKSRGMGRRITIAAIPVVIFAGIVAAAFAFRSQK
Ga0066695_108980382	3300005553	Soil	LRNQGESLVMPVDSLKPDLGSLRIHDGQRSKSGVGKRVFYAAIPVLIFAAIVATAFALRNQKPVVEVATAAKPE
Ga0066705_108346921	3300005569	Soil	MPVDSSKPDLGSLRIHDGQRAKSGMGKRVVYASIPVLIFGAIVATAFALRSQKPV
Ga0070766_106157101	3300005921	Soil	MATPLNSAKPDLGSLRIHDGQRAKSGLGRRIMYAAIPVLIFAGIVAAAYAFRSQKPVVDVAAAVK
Ga0066652_1009515553	3300006046	Soil	LRNQGESLVMPVDSLKPDLGSLRIHDGQRSKSGVGKRVFYAAIPVLIFAAIVATAFALRNQKPVVEVATAAKPESG
Ga0066658_104531701	3300006794	Soil	MATSQVSAKPDLGSLRIHDGQRSKTGTGKRVIFAAIPVLIFAGIVVAAYAFRSQKPMVEVATATK
Ga0079220_101286423	3300006806	Agricultural Soil	LSNYGDSLAMPVDSSKPDLGSLRIRDGQRAKFGMGKRVMYASIPVLIFGAIVATAFALRSQKPIVEVATAAKPDS
Ga0079220_106233702	3300006806	Agricultural Soil	MRDTAETLVMPVDPSKPDLGSLRIHDGQRSKSGMGKRILYASIPVVIFGAIVATAFALRSQKPLVEVATVAK
Ga0075436_1000941231	3300006914	Populus Rhizosphere	MASPEISAKPDLGSLRIHDGERSQSKMGKRIFYASIPVLIFAGIVGAAYAFR
Ga0099794_103285441	3300007265	Vadose Zone Soil	MASPQISAKPDLGSLRIHDGQRSQSKMGKRIFYASIPVLIFAGIVAAAYAFRSQKPVVEVATAAKIRTGIEA*
Ga0099794_104523551	3300007265	Vadose Zone Soil	MATPVNLPRPDLGSLRIGEGQRKGSGMGKRVVYATIPVLIFAGIVAGAYALRS
Ga0099794_105635661	3300007265	Vadose Zone Soil	MATPPISARPDLGSLRIHDGQRSKSGMGKRILYAAIPVLLFAGIVVAAFAFRNQKAVVEV
Ga0099829_100903921	3300009038	Vadose Zone Soil	MVLMATPANLPKPDLSALRIDDRHRSQSKMGKRIFYASIPVLIFAGIVAAAYAF
Ga0099829_106256491	3300009038	Vadose Zone Soil	MASPEISAKPDLGSLRIHDGQRSQSKMGKRVFYASIPVLIFAGIVAAAYAFRSQKPV
Ga0099829_116558791	3300009038	Vadose Zone Soil	MGTEPNSPRADLGSLRIGEGQRKGSGMGKRVVYATIPVLIFAGIVAGAYALRSQKPVVEVASASKPEA
Ga0099830_102882482	3300009088	Vadose Zone Soil	MASPEISAKPDLGSLRIHDGQRSQSKMGKRVFYASIPVLIFAGIVAAAYAFRSQKPVVEVATAAKPEAGG
Ga0099830_104004311	3300009088	Vadose Zone Soil	MATPLNSARPDLGSLRIGDGQRKSTGMGRRVIYAAIPVLIFAGIVAAAYAFRSQKPVVEVAT
Ga0099830_108346781	3300009088	Vadose Zone Soil	MATPPVSARPDLGSLRIHDGQRSQSKMGKRMFYASIPVLIFAGIVAA
Ga0099830_112084251	3300009088	Vadose Zone Soil	MATPPVSARPDLGSLRIHDGQRNQSKMGKRMFYASIPVLIFAGIVAAALAFRNQ
Ga0099830_114446641	3300009088	Vadose Zone Soil	MASPRVTPKADLGSLRIHDGERKSTGMGRRITIAAIPVVIFAGIVAAAVAF
Ga0134084_100459552	3300010322	Grasslands Soil	MATSQVSAKPDLGSLRIHDGQRSKTGTGKRVIFAAIPVLIFAGIVVAAYAFRSQKPMVEVATAT
Ga0134084_102347841	3300010322	Grasslands Soil	MPDLGSLRIHDGQRAKSGMGKRVVYASIPVLVFGAIVATAFALRSQKPVVEVTTAAKPDSEG
Ga0134063_100684231	3300010335	Grasslands Soil	MATSQVSAKPDLGSLRIHDGQRSKTGTGKRVIFAAIPVLIFAGIVVAAYAFRSQKPMVE
Ga0126370_120823141	3300010358	Tropical Forest Soil	MPVDTSKPDLGSLRIHDGQRAKSGMGRRIVYASIPVIIFGAIVATAFALRSQKP
Ga0126376_103468822	3300010359	Tropical Forest Soil	VATPAASSKPDLGSLRIQDGQRSKSGVGKRAFYAAIPVVVFALIVATAYALRNQKPLVEVVMVTKP
Ga0126376_108862851	3300010359	Tropical Forest Soil	MATPLDSPRPDLGSLRIHDGQRSKSGMGKRVVYASIPVLIFAGIVATAFALRNQKPVVAV
Ga0126378_101790311	3300010361	Tropical Forest Soil	VTTQAASAKPDLGSLRIHDGQRTKSGVGKRAIYAAIPVVIFGLIVATAYALRNQKPVVE
Ga0126378_104967001	3300010361	Tropical Forest Soil	MPGESSKPDLGSLRIHEGQRSTSGMGRRIVYASIPVIIFAAIVATAFLLREQKAVVEVATAANPDAQGPLTALNASGYVTP
Ga0126378_109981771	3300010361	Tropical Forest Soil	MPVDSSKPDLGSLRIHDGQRAKSGMGRRVMYASIPVIIFGAIVATAFALRTQKAVVEVAA
Ga0126379_103227951	3300010366	Tropical Forest Soil	MATPPDSQKPDLGSLRIKEEQRSKSGMGKRVLYAAIPVIIFAVIVVAAFA
Ga0126383_104095392	3300010398	Tropical Forest Soil	MSAEILVATPTVSSKPDLGSLRIHDGQRSKSGLGKRALYAAIPVVIFALIVATAFALRNQKPVV*
Ga0137391_101798343	3300011270	Vadose Zone Soil	MATPSISPKPDLGTLRIGEGQRKNASMTKRVLYASIPVLIFVGIVAAAFALRSQAPVVEIAG*
Ga0137393_102804071	3300011271	Vadose Zone Soil	MATPSISPKPDLGTLRIGEGQRKNASMTKRVLYASIPVLIFVGIAAAAFALRSQAPVVEIAG
Ga0137393_108977191	3300011271	Vadose Zone Soil	MATPLNSARPDLGSLRIGDGQRKSTGMGRRVIYAAIPVLIFAGIVAAAYAFRSQKPVVELATAAKPDGGSRQAL
Ga0137393_109170652	3300011271	Vadose Zone Soil	MASPEISAKPDLGSLRIHDGQRSQSKMGKRVFYASIPVLIFAGIVAAAYAFRSQKPVVEVATAAK
Ga0137389_114211112	3300012096	Vadose Zone Soil	MATLPNSPKPDLSSLRIGEGQRTSTGTARRVVYAAIPVLIFAGIMVAAFALHNQKPVVEVAAASKPDAGGP
Ga0137389_117896991	3300012096	Vadose Zone Soil	MASPEISAKPDLGSLRIHDGQRSQSKMGKRVFYASIPVLIFAGIVAAAYAFRSQRPVVEVATAAK
Ga0137388_108187292	3300012189	Vadose Zone Soil	MATPPVSARPDLGSLRIHDGQRNQSKMGKRMFYASIPVLIFAGIVAAALTFRNQ
Ga0137388_112260211	3300012189	Vadose Zone Soil	MATPANLPKPDLSALRIDDRQRSQSKLGKRIFYASIPVVIFAGIVAAAYALRNQ
Ga0137388_112442061	3300012189	Vadose Zone Soil	MATPPISARPDLGSLRIHDGQRSKSGMGKRIVYAAIPVLLFAGIVVAA
Ga0137383_102243341	3300012199	Vadose Zone Soil	MATSQVSAKPDLGSLRIHDGQRSKTGTGKRVIFAAIPVLIFAGIVAAAYAFRSQKPMVE
Ga0137382_105344821	3300012200	Vadose Zone Soil	MASSQISAKPDLGSLRIQDGQRSQSKMGKRVLIASIPVLILAIIVAAAFAFRNQKPVVE
Ga0137382_108138581	3300012200	Vadose Zone Soil	MASPEISAKPDLGSLRIHDGQRSQSRIGKRIFYASIPVLIFAGIVAAAYA
Ga0137379_110336161	3300012209	Vadose Zone Soil	MASPQISAKPDLGSLRIHDGQRNQSKMGKRMIVVSIPILVLAGLGAANYAFRSQKP
Ga0137379_112797781	3300012209	Vadose Zone Soil	MPADSLKPDLGSLRIHDGERSKSGMGKRMFYAAIPVVIFGAIVATAFALRNQKPVVEVATAAKP
Ga0137378_100644371	3300012210	Vadose Zone Soil	MPVDSSKPDLGSLRIHDGQRTKSGMGKRVMYASIPVLIFGAIVATAFALRSQKPIVEVAAAAKPDSEGPQTALNA
Ga0137377_103439392	3300012211	Vadose Zone Soil	MASPQISAKPDLGSLRIHDGQRNQSKMGKRMILVSIPILVLAGLGAANYAFRSQKSVVEVATAANQMPAGAWRC*
Ga0137377_119118291	3300012211	Vadose Zone Soil	MASPQISAKPDLGSLRIHDGQRSQSKMSKRIFYASIPVIIFAGIVAAAFAFRNQKPVVEVATAAKPDAGG
Ga0137360_102418293	3300012361	Vadose Zone Soil	MASSQISAKPDLGSLRIGDGQRKSSGMGRRVMYAAIPVLIFAGIVAAAYAFRSQKPVVEVASAAKPD
Ga0137360_102561081	3300012361	Vadose Zone Soil	MASPEISAKPDLGSLRIHDGQRSQSKMGKRMFYAAIPVVIFAGIVAAAFAFRNQKAVVEVAAAAKPDAG
Ga0137360_113200211	3300012361	Vadose Zone Soil	MATPPISARPDLGSLRIHDGQRSKSGMGKRIVYAAIPVLLFAGIVVAAFAFRNQKAV
Ga0137361_105473632	3300012362	Vadose Zone Soil	MASSQISAKPDLGSLRIQDGQRSQSKMGKRVLIASIPVLILAIIVAAAFAFRNQKPVVEV
Ga0137390_102931751	3300012363	Vadose Zone Soil	MASPQISAKPDLGSLRIHDGQRSQSKMGKRIFYASIPVLIFAGIVAAA
Ga0137397_104045241	3300012685	Vadose Zone Soil	MATPPISARPDLGSLRIHDGQRSKSGMGKRIVYAAIPVLLFAGIVVAAFALRNQKAVVEVAPASRADSAGPQTALNA
Ga0137397_104750071	3300012685	Vadose Zone Soil	MATPPISARPDLGSLRIQDGQRSKSGMGKRIVYAAIPVLLFAGIVVAAFAFRNQKSVVEV
Ga0137396_101808093	3300012918	Vadose Zone Soil	MASSEVSAKPDLGSLRIHDGQRSKTGAGKRVIYAAIPVLIFAGIVAGAYALRSQKPMVEVAAAARPE
Ga0137396_109589182	3300012918	Vadose Zone Soil	MASSQISAKPDLGSLRIGEGQRKSSGMGRRVMYAAIPVLIFAGIVAAAYAFRSQ
Ga0137394_114359631	3300012922	Vadose Zone Soil	MASPEISAKPDLGSLRIHDGQRSQSKMGRRILYASIPVLIFAGIVVAAY
Ga0137419_112567152	3300012925	Vadose Zone Soil	VALMATPPVSSRPDLGSLRIQDGQRSKSGMGKRIVYAAIPVLLFAGIVVAAFALRNQKAVVEVAAASRADSA
Ga0137419_119384151	3300012925	Vadose Zone Soil	MASSQISAKPDLGSLRIGEGQRKGAGMGRRVMYAAIPVLIFAGIVAAAYAFRSQKPVVEVASAAKPD
Ga0134081_101792621	3300014150	Grasslands Soil	MPVDSPKHDLGSLRIHDGQRMKSGLGKRVSYASIPVVIFAAIVATAFALRNQKPVVEVA
Ga0137411_10309712	3300015052	Vadose Zone Soil	MASPEISAKPDLGSLRIHDGQRSQSKMGRRILYASIPVLIFAGIVVAAYAFRSQKPVVEV
Ga0137411_10683394	3300015052	Vadose Zone Soil	MATPPISARPDLGSLRIHDGQRSKTGMGKRVLYAAIPVLVFAGIVVAALAFRNQKAVVEVAAA
Ga0182035_115117411	3300016341	Soil	MPGESSRPDLGSLRIHEGQRSKSGMGRRIFYASIPVIIFGAIVAAAFALREQKPVVEVVTAAKPGAEGPVTAL
Ga0182037_100489453	3300016404	Soil	MPGESSKPDLGSLRIHEGQRSKSGMGRRIFYASIPVIIFGAIVAAAFALREQKPVVEVATAAKPGAEGPVTALNA
Ga0179594_102122511	3300020170	Vadose Zone Soil	MATPPISARPDLGSLRIHDGQRSESGMGKRIVYAAIPVLLFAGIVVAAFAFRNQKAVVEVAPASRADSAGPQ
Ga0210399_110822492	3300020581	Soil	MATPANSARHDLGSLRIGEGQRKGSGMGKRVIYAAIPVLIFAGIVA
Ga0210401_110749141	3300020583	Soil	MATPANSARHDLGSLRIGEGQRKGSGMGKRVIYAAIPVLIFAGIVAGPY
Ga0210404_101683323	3300021088	Soil	MATSPNSPRPDLGSLRIGDGQRKSSGMGRRVMYAAIPVLIFAGIVAAAYAFRSQKPVVDV
Ga0210409_104947462	3300021559	Soil	MATPLNSTKPDLGSLRIHDGQRAKSGLGKRVVYAAIPVVIFAGIVAAAYAFR
Ga0210409_105427412	3300021559	Soil	MASPEVSAKPDLGSLRIHDGQRSKTGAGKRVIYAAIPVLIFAGIVAGAYALRSQKPLVEVATVAKPEAGG
Ga0126371_115707471	3300021560	Tropical Forest Soil	VTTQAASAKPDLGSLRIHDGQRTKSGVGKRAIYAAIPVVIFGLIVATAYALRNQKPVVEVATIIKPEP
Ga0126371_135409221	3300021560	Tropical Forest Soil	MATPPDSQKPDLGSLRIQENQRSKSGMGKRILYAAIPVIIFAVIVVTAFALRNQKPVVEV
Ga0137417_14283011	3300024330	Vadose Zone Soil	MASSQISAKPDLGSLAHSDGQRKSSGMGRRVMYAAIPVLIFAGPIVADRLCLRSQKPVVEVASAADPTRGAARRC
Ga0209238_12687681	3300026301	Grasslands Soil	LSNYGDSLAMPVDSSKPDLGSLRIHDGQRAKSGMGKRVVYASIPVLVFGAIVATAFALRSQKPVVEVTTAAKPDSEGPQT
Ga0209239_11913381	3300026310	Grasslands Soil	LSNYGDSLAMPVDSSKPDLGSLRIHDGQRAKSGMGKRVVYASIPVLIFGAIVATAFALRSQK
Ga0209472_12120712	3300026323	Soil	LSNYGDSLAMPVDSSKPDLGSLRIHDGQRAKSGMGKRVVYASIPVLIFGAIVATAFALRS
Ga0257179_10189142	3300026371	Soil	VLMGTEPNSPRADLGSLRIGEGQRKGSGMGKRVVYATIPVLIFAGIVAGAYALRSQKPVVEVASAAKPEAGG
Ga0257158_10248052	3300026515	Soil	MASSQISAKPDLGSLRIGEGQRKGAGMGRRVMYAAIPVLIFAGIVAAAYAFRSQKPVVEVASAAKPDAG
Ga0209161_1000113118	3300026548	Soil	MASSQISAKPDLGSLRIQDGQRSQSKMGKRVLIACIPVLIFAIIVAAAFAFRNQKPVVEVAAAA
Ga0209648_100170721	3300026551	Grasslands Soil	MASPQISAKPDLGSLRIHDGQRSQSKMGKRMILVSLPILVLAGLGAANY
Ga0209648_106078042	3300026551	Grasslands Soil	VLMATSPNSPRPDLGSLRIGEGQRKSSGMGKRVIYAAIPVLIFAGIVAAGYAFRSQK
Ga0209729_10326242	3300027061	Forest Soil	MSNYGESLVMPADSSKPDLGSLRIHEGQRAKSGMGRRVLYASIPVVIFGAIVAAAFVLREQKPV
Ga0208365_10399831	3300027070	Forest Soil	MATPANAARHDLSSLRIGEGQRKGSGMGKRVIYAAIPVLIFAGIVAGAY
Ga0209117_10837391	3300027645	Forest Soil	MSVSFLVLLFTAISARPDLGSLRIHDGQRSNSSMGKRIVYAAIPVLLFAGIVVAAFAFRNQKAVVE
Ga0209117_11248721	3300027645	Forest Soil	VATPPISAKPDLGSLRIGDGQRKSSGMGKRVMYAAIPVLIFAGIVAAAYAFRSQKPVVEVATAAKP
Ga0209180_102912561	3300027846	Vadose Zone Soil	MASSQVSAKPDLGSLRIHDGQRSKTGTGKRVIFAAIPVLIFAGIVAAAYAFRSQKPM
Ga0209701_104486471	3300027862	Vadose Zone Soil	VVMATPLNSARPDLGSLRIGDGQRKSTGMGRRVIYAAIPVLIFAGIVAAAYAFR
Ga0137415_105173132	3300028536	Vadose Zone Soil	MATPPISARPDLGSLRIHDGQRSKSGIGKRVLYAAIPVFLFAGIVVAAFAFRNQK
Ga0137415_106984961	3300028536	Vadose Zone Soil	MASSEISGKADLGSLRIHDGQRSKTGTGKRVIYAAIPVLLFAGIVAAAYTFRSQKPLVEVATAAK
Ga0137415_111881592	3300028536	Vadose Zone Soil	MATPANAPKHDLGSLRIGEGQRKGGGMGRRVMYAAIPVLIFAGIVAGAY
Ga0307308_102061041	3300028884	Soil	MASSQVSAKPDLGSLRIHDGQRSKTGTGKRVIFAAIPVLIFAGIVAAAYAFRSQK
Ga0073994_120877891	3300030991	Soil	MATPANSPKHDLGSLRIGEGQRKGSGMGKRVVYAGIPVLIFAGIVA
Ga0307474_102644002	3300031718	Hardwood Forest Soil	MASSEVSAKPDLGSLRIHDGQRSKTGAGKRVIYAAIPVLIFAGIVAGA
Ga0318501_105602181	3300031736	Soil	MSNYGESLVMPADSSKPDLGSLRIHDGQRAKSTMGRRVLYASIPVVIFGAIVATAFALRNQK
Ga0306918_115666721	3300031744	Soil	MSNYGESLVMPADSSKPDLGSLRIHDGQRAKSTMGRRVLYASIPVVIFGAIVATAFALRNQKPVVEVATV
Ga0307477_101643541	3300031753	Hardwood Forest Soil	MATPIDTQKPDLGSLRIQENQRSKSGMGKRIIYAAIPVLIFGLIVVTAFALRSQTPV
Ga0307475_105611491	3300031754	Hardwood Forest Soil	MASSEVSAKPDLGSLRIHDGQRSKTGAGKRVIYAAIPVLIFGGIVAGAYALRSQKPMVEVATAAKPEAGGPQ
Ga0318517_102907362	3300031835	Soil	MSNYGESLVMPADSSKPDLGSLRIHDGQRAKSTMGRRVLYASIPVVIFGAIVATAFALRNQKPVVEV
Ga0306925_100252391	3300031890	Soil	MSNYGESLVMPADSSKPDLGSLRIHDGQRAKSTMGRRVLYASIPVVIFGAIVATAFALRNQKPVVEVATVAKP
Ga0307479_118788161	3300031962	Hardwood Forest Soil	MATPANLPKPELSALRIDERQRSQSKLGKRVFYASIPVLIFAGIIAAAYALRNQRPM
Ga0318533_100027511	3300032059	Soil	MSNYGESLVMPADSSKPDLGSLRIHDGQRAKSTMGRRVLYASIPVVIFGAIVATAFALRNQKPVVE
Ga0306920_1007804132	3300032261	Soil	LSNYGESLAMPVDSSKPDLGSLRIHDGQRSKSGTGRRVIYASIPVIIFGAIVATAFALRTQKAVVEVAAAAKPDSEGPQTA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F071072

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences