Metagenome / Metatranscriptome Family F070868

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070868
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	51 residues
Representative Sequence	MAEEIHILKVEKDGEDGLIVTFSDGTIGGYVVEELLLLRPIREAVKEPADSI
Number of Associated Samples	87
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	43.59 %
% of genes near scaffold ends (potentially truncated)	46.72 %
% of genes from short scaffolds (< 2000 bps)	79.51 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.787 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog (14.754 % of family members)
Environment Ontology (ENVO)	Unclassified (50.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.721 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.75% β-sheet: 22.50% Coil/Unstructured: 68.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF13545	HTH_Crp_2	4.92
PF00232	Glyco_hydro_1	2.46
PF00072	Response_reg	1.64
PF03743	TrbI	1.64
PF09976	TPR_21	1.64
PF05988	DUF899	1.64
PF02897	Peptidase_S9_N	0.82
PF13534	Fer4_17	0.82
PF00753	Lactamase_B	0.82
PF09899	DUF2126	0.82
PF13487	HD_5	0.82
PF12704	MacB_PCD	0.82
PF13451	zf-trcl	0.82
PF01207	Dus	0.82
PF01070	FMN_dh	0.82
PF02416	TatA_B_E	0.82
PF04545	Sigma70_r4	0.82
PF01797	Y1_Tnp	0.82
PF01464	SLT	0.82
PF06745	ATPase	0.82
PF07732	Cu-oxidase_3	0.82
PF13692	Glyco_trans_1_4	0.82
PF02371	Transposase_20	0.82
PF07238	PilZ	0.82
PF03572	Peptidase_S41	0.82
PF00596	Aldolase_II	0.82
PF00027	cNMP_binding	0.82
PF07609	DUF1572	0.82
PF07228	SpoIIE	0.82
PF13776	DUF4172	0.82
PF01329	Pterin_4a	0.82
PF01555	N6_N4_Mtase	0.82
PF01790	LGT	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG2723	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	Carbohydrate transport and metabolism [G]	2.46
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	1.64
COG2948	Type IV secretory pathway, VirB10 component	Intracellular trafficking, secretion, and vesicular transport [U]	1.64
COG1826	Twin-arginine protein secretion pathway components TatA and TatB	Intracellular trafficking, secretion, and vesicular transport [U]	0.82
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.82
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.82
COG2154	Pterin-4a-carbinolamine dehydratase	Coenzyme transport and metabolism [H]	0.82
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	0.82
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.82
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	0.82
COG1770	Protease II	Amino acid transport and metabolism [E]	0.82
COG1505	Prolyl endopeptidase PreP, S9A serine peptidase family	Amino acid transport and metabolism [E]	0.82
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.82
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.82
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.82
COG0793	C-terminal processing protease CtpA/Prc, contains a PDZ domain	Posttranslational modification, protein turnover, chaperones [O]	0.82
COG0682	Prolipoprotein diacylglyceryltransferase	Cell wall/membrane/envelope biogenesis [M]	0.82
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.79 %
Unclassified	root	N/A	17.21 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.79 %
Unclassified	root	N/A	17.21 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.79 %
Unclassified	root	N/A	17.21 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	69.67 %
Unclassified	root	N/A	17.21 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.64 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	67.21 %
Unclassified	root	N/A	17.21 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.82 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	65.57 %
Unclassified	root	N/A	17.21 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.82 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	65.57 %
Unclassified	root	N/A	17.21 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.82 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.21 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	1.64 %
Occallatibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter	0.82 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.82 %
Bacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	0.82 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.21 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	1.64 %
Occallatibacter riparius	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	0.82 %
Virgibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Virgibacillus	0.82 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.82 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300007982\|Ga0102924_1108013	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1383	Open in IMG/M
3300009175\|Ga0073936_10260337	Not Available	1161	Open in IMG/M
3300009519\|Ga0116108_1229912	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	542	Open in IMG/M
3300009623\|Ga0116133_1005585	All Organisms → cellular organisms → Bacteria	3173	Open in IMG/M
3300009630\|Ga0116114_1075578	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	919	Open in IMG/M
3300009635\|Ga0116117_1013448	All Organisms → cellular organisms → Bacteria	2093	Open in IMG/M
3300009644\|Ga0116121_1089744	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	961	Open in IMG/M
3300009645\|Ga0116106_1106654	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	905	Open in IMG/M
3300009665\|Ga0116135_1335911	Not Available	603	Open in IMG/M
3300009665\|Ga0116135_1419599	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	545	Open in IMG/M
3300009764\|Ga0116134_1238254	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	629	Open in IMG/M
3300010343\|Ga0074044_10422048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Virgibacillus	873	Open in IMG/M
3300010379\|Ga0136449_100716095	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1675	Open in IMG/M
3300011120\|Ga0150983_11512476	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	817	Open in IMG/M
3300014151\|Ga0181539_1180074	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	824	Open in IMG/M
3300014152\|Ga0181533_1146013	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	974	Open in IMG/M
3300014153\|Ga0181527_1123086	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1177	Open in IMG/M
3300014153\|Ga0181527_1172014	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	927	Open in IMG/M
3300014155\|Ga0181524_10137010	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1292	Open in IMG/M
3300014156\|Ga0181518_10162078	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1190	Open in IMG/M
3300014160\|Ga0181517_10503512	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	613	Open in IMG/M
3300014164\|Ga0181532_10246592	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1028	Open in IMG/M
3300014199\|Ga0181535_10387877	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	820	Open in IMG/M
3300014489\|Ga0182018_10110108	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	1605	Open in IMG/M
3300014491\|Ga0182014_10004542	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	15846	Open in IMG/M
3300014491\|Ga0182014_10020980	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5526	Open in IMG/M
3300014491\|Ga0182014_10025685	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4751	Open in IMG/M
3300014491\|Ga0182014_10064010	Not Available	2416	Open in IMG/M
3300014491\|Ga0182014_10642369	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	507	Open in IMG/M
3300014492\|Ga0182013_10269783	Not Available	972	Open in IMG/M
3300014492\|Ga0182013_10414709	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	719	Open in IMG/M
3300014494\|Ga0182017_10922247	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	525	Open in IMG/M
3300014495\|Ga0182015_10640765	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	672	Open in IMG/M
3300014496\|Ga0182011_10266887	All Organisms → cellular organisms → Bacteria	1144	Open in IMG/M
3300014501\|Ga0182024_10006324	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	26075	Open in IMG/M
3300014501\|Ga0182024_10343067	All Organisms → cellular organisms → Bacteria	1955	Open in IMG/M
3300014501\|Ga0182024_10662945	All Organisms → cellular organisms → Bacteria → Proteobacteria	1294	Open in IMG/M
3300014501\|Ga0182024_11066961	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	957	Open in IMG/M
3300014501\|Ga0182024_12279553	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	590	Open in IMG/M
3300014655\|Ga0181516_10290361	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300014658\|Ga0181519_10226591	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1172	Open in IMG/M
3300014838\|Ga0182030_11692099	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	513	Open in IMG/M
3300016698\|Ga0181503_1209808	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	537	Open in IMG/M
3300017948\|Ga0187847_10141361	All Organisms → cellular organisms → Bacteria → Acidobacteria	1317	Open in IMG/M
3300017988\|Ga0181520_10012934	All Organisms → cellular organisms → Bacteria	10632	Open in IMG/M
3300017988\|Ga0181520_10696274	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	695	Open in IMG/M
3300017988\|Ga0181520_11122375	Not Available	515	Open in IMG/M
3300018033\|Ga0187867_10771068	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	523	Open in IMG/M
3300018034\|Ga0187863_10254966	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	975	Open in IMG/M
3300018034\|Ga0187863_10461688	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	710	Open in IMG/M
3300018034\|Ga0187863_10574977	Not Available	633	Open in IMG/M
3300018034\|Ga0187863_10736734	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	557	Open in IMG/M
3300018035\|Ga0187875_10091779	All Organisms → cellular organisms → Bacteria	1733	Open in IMG/M
3300018035\|Ga0187875_10460132	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	676	Open in IMG/M
3300018035\|Ga0187875_10696451	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	534	Open in IMG/M
3300018044\|Ga0187890_10430389	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	740	Open in IMG/M
3300019082\|Ga0187852_1425075	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	516	Open in IMG/M
3300019189\|Ga0184585_140619	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	522	Open in IMG/M
3300021181\|Ga0210388_10381607	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	1239	Open in IMG/M
3300021181\|Ga0210388_11117655	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	672	Open in IMG/M
3300021474\|Ga0210390_11355110	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	568	Open in IMG/M
3300022524\|Ga0224534_1005697	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4528	Open in IMG/M
3300022555\|Ga0212088_10000213	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	126063	Open in IMG/M
3300023088\|Ga0224555_1004575	All Organisms → cellular organisms → Bacteria	12526	Open in IMG/M
3300023088\|Ga0224555_1062940	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1291	Open in IMG/M
3300023091\|Ga0224559_1191846	Not Available	709	Open in IMG/M
3300023101\|Ga0224557_1017420	All Organisms → cellular organisms → Bacteria	3966	Open in IMG/M
3300023248\|Ga0224525_1085782	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	546	Open in IMG/M
3300023255\|Ga0224547_1002840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2105	Open in IMG/M
3300024295\|Ga0224556_1039233	All Organisms → cellular organisms → Bacteria	1180	Open in IMG/M
3300024295\|Ga0224556_1157427	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	556	Open in IMG/M
3300025500\|Ga0208686_1077823	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	730	Open in IMG/M
3300025501\|Ga0208563_1067431	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	729	Open in IMG/M
3300026474\|Ga0247846_1014468	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1388	Open in IMG/M
3300027867\|Ga0209167_10377403	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	772	Open in IMG/M
3300028087\|Ga0255354_1059938	Not Available	775	Open in IMG/M
3300028087\|Ga0255354_1085115	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	582	Open in IMG/M
3300028788\|Ga0302189_10104373	Not Available	1277	Open in IMG/M
3300028788\|Ga0302189_10369472	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	567	Open in IMG/M
3300028800\|Ga0265338_10738612	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	677	Open in IMG/M
3300028873\|Ga0302197_10373201	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	634	Open in IMG/M
3300029883\|Ga0311327_10897210	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	512	Open in IMG/M
3300029913\|Ga0311362_10169182	Not Available	2599	Open in IMG/M
3300029913\|Ga0311362_10246331	All Organisms → cellular organisms → Bacteria	1953	Open in IMG/M
3300029955\|Ga0311342_10647714	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	845	Open in IMG/M
3300030000\|Ga0311337_10371980	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1205	Open in IMG/M
3300030002\|Ga0311350_10253700	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1567	Open in IMG/M
3300030004\|Ga0302186_10230243	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	631	Open in IMG/M
3300030020\|Ga0311344_11297436	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	541	Open in IMG/M
3300030051\|Ga0302195_10121502	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1279	Open in IMG/M
3300030051\|Ga0302195_10355300	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	640	Open in IMG/M
3300030114\|Ga0311333_10048734	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3027	Open in IMG/M
3300030688\|Ga0311345_10711213	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	806	Open in IMG/M
3300030838\|Ga0311335_10134631	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1619	Open in IMG/M
3300030940\|Ga0265740_1022549	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	657	Open in IMG/M
3300030943\|Ga0311366_11432427	Not Available	593	Open in IMG/M
3300031090\|Ga0265760_10051714	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1238	Open in IMG/M
3300031232\|Ga0302323_102500506	All Organisms → cellular organisms → Bacteria → Acidobacteria	589	Open in IMG/M
3300031247\|Ga0265340_10051003	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2005	Open in IMG/M
3300031247\|Ga0265340_10470673	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	553	Open in IMG/M
3300031261\|Ga0302140_10998024	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	576	Open in IMG/M
3300031344\|Ga0265316_10666949	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	734	Open in IMG/M
3300031524\|Ga0302320_10714434	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1134	Open in IMG/M
3300031524\|Ga0302320_10799515	Not Available	1044	Open in IMG/M
3300031669\|Ga0307375_10143130	Not Available	1663	Open in IMG/M
3300031708\|Ga0310686_101284544	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	675	Open in IMG/M
3300031708\|Ga0310686_116882093	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2592	Open in IMG/M
3300031712\|Ga0265342_10180830	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300031788\|Ga0302319_11074859	Not Available	758	Open in IMG/M
3300032515\|Ga0348332_11512582	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	926	Open in IMG/M
3300032515\|Ga0348332_14211631	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	995	Open in IMG/M
3300033402\|Ga0326728_10006685	All Organisms → cellular organisms → Bacteria	30739	Open in IMG/M
3300033402\|Ga0326728_10329430	Not Available	1365	Open in IMG/M
3300033405\|Ga0326727_10014079	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	17547	Open in IMG/M
3300033405\|Ga0326727_10341600	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1429	Open in IMG/M
3300033982\|Ga0371487_0060500	All Organisms → cellular organisms → Bacteria → Acidobacteria	2150	Open in IMG/M
3300034282\|Ga0370492_0323418	Not Available	626	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.90%
Host-Associated	Host-Associated	4.10%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.11%
Aquatic	Environmental → Aquatic	32.79%
Plants	Host-Associated → Plants	4.10%

Habitat	Taxonomy	Distribution
Peat	Environmental → Terrestrial → Peat	34.43%
Freshwater	Environmental → Aquatic → Freshwater	31.97%
Soil	Environmental → Terrestrial → Soil	27.05%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.10%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.64%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	34.43%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	30.33%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	17.21%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	8.20%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.10%
Lake	Environmental → Aquatic → Freshwater → Lake	1.64%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.64%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.82%
Loam	Environmental → Terrestrial → Soil → Loam	0.82%
Clay	Environmental → Terrestrial → Soil → Clay	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	34.43%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	21.31%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	15.57%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	9.02%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	5.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.10%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.46%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.64%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.64%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.64%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.82%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	14.75%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	11.48%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	9.84%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	9.84%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	9.02%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	7.38%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	4.92%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	4.92%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	4.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.10%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	4.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.46%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	1.64%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	1.64%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.64%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.64%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.82%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.82%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.82%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.82%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.82%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009175	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009630	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300014151	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG	Environmental	Open in IMG/M
3300014152	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaG	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014160	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014496	Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014655	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaG	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016698	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300019189	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300022524	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24	Environmental	Open in IMG/M
3300022555	Alinen_combined assembly	Environmental	Open in IMG/M
3300023088	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34	Environmental	Open in IMG/M
3300023091	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 30-34	Environmental	Open in IMG/M
3300023101	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14	Environmental	Open in IMG/M
3300023248	Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T100	Environmental	Open in IMG/M
3300023255	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 10-14	Environmental	Open in IMG/M
3300024295	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5	Environmental	Open in IMG/M
3300025500	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40 (SPAdes)	Environmental	Open in IMG/M
3300025501	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150 (SPAdes)	Environmental	Open in IMG/M
3300026474	Peat soil microbial communities from Stordalen Mire, Sweden - P.F.S.T0	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028087	Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T50	Environmental	Open in IMG/M
3300028788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_2	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028866	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2	Environmental	Open in IMG/M
3300028873	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_1	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029955	II_Bog_E2 coassembly	Environmental	Open in IMG/M
3300030000	I_Fen_N3 coassembly	Environmental	Open in IMG/M
3300030002	II_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030004	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_1	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030051	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_2	Environmental	Open in IMG/M
3300030114	I_Fen_E2 coassembly	Environmental	Open in IMG/M
3300030688	II_Bog_N2 coassembly	Environmental	Open in IMG/M
3300030838	I_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030940	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030943	III_Fen_N2 coassembly	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031669	Soil microbial communities from Risofladan, Vaasa, Finland - TR-1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031712	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG	Host-Associated	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033982	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fraction	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0102924_11080131	3300007982	Iron-Sulfur Acid Spring	MDGEAIRILTEERDGEDGVIVTFSDGTSAGYVADELLDLR
Ga0073936_102603372	3300009175	Freshwater Lake Hypolimnion	MDEEIEILEVEKDGKDGLIVTFSDGTRGGYVVEELLLLRPTRERVREPVNSA*
Ga0116108_12299121	3300009519	Peatland	MSVETHIDKVERDGEDGLIVTFSDGTTCGYVVEELLDLRPIRERVKEIPVVQ*
Ga0116133_10055855	3300009623	Peatland	MSVETHIDKVERDGEDGLIVTFSDGTTCGYGVEELLDLRPIRERVK
Ga0116114_10755783	3300009630	Peatland	MSVETHIDKVERDGEDGLIVTFSDGTTCGYVVEELLDLRPIREKVKETPVVQ*
Ga0116117_10134484	3300009635	Peatland	MSVETHIDKVERDGEDGLIVTFSDGTTCGYVVEELLDLRPIRE
Ga0116121_10897442	3300009644	Peatland	MTQDIKILKVEKDGEDGLIVTFSDGTIGGYVVEELLSLRPIREAVKDPVDTS*
Ga0116106_11066543	3300009645	Peatland	MSGDTHIDKVETDGEDGLLVTFSDGTTCGYVVEELLDLRPIREKVKETPVVQ*
Ga0116135_13359112	3300009665	Peatland	MAEETKIHKVEKDGEDGLIVTFSDGTIGGYVVEELLEIRPIREPVKEAPVAV*
Ga0116135_14195992	3300009665	Peatland	MSVETHIDKVERDGEDGLIVTFSDGTTCGYVVEELLDLRPI
Ga0116134_12382542	3300009764	Peatland	MTQDIKILKVEKDGEDGLIVTFSDGTIGGYVVEELLSLRPIREAVKDPVDT
Ga0074044_104220482	3300010343	Bog Forest Soil	MACEVRILKVEIDGEDGLIVTFSDGTVGGYVVEELLALRPIREKVEELAVRTPRSKPATHS*
Ga0136449_1007160951	3300010379	Peatlands Soil	MANHVRILNVEKDGEDGLLVTFSDGTRGGFVVEELLALRPIREKV
Ga0150983_115124761	3300011120	Forest Soil	MVEKDGEDGLIVTFSDGTITGYVAEELLLLRPCRERAEEPVN
Ga0181539_11800743	3300014151	Bog	MTEEIHILEVERDGEDGLIVTFSDGTVGGYVVEELLQLRPIREAVKKTPP
Ga0181533_11460131	3300014152	Bog	MSEAIRILKVEADGEDGVIVTFSDGTLAGYVVEELLLLRPVREAVKEPVDSN*
Ga0181527_11230861	3300014153	Bog	FAMTKDIKILKVEKDGEDGVLVTFSDGTLAGYVVDELLLLRPIREAVKEPVISS*
Ga0181527_11720141	3300014153	Bog	MTGKTNILKVEVDGEDGLIVTFSDGTKAGYVVEELLLLRPIREAVKEPVDSN*
Ga0181524_101370101	3300014155	Bog	AAWKWRTLFAMTKDIKILKVEKDGEDGVLVTFSDGTLAGYVVDELLLLRPIREVVKEPVDSD*
Ga0181518_101620781	3300014156	Bog	FSTMSGDTHIDKVETDGEDGLLVTFSDGTTCGYVVEELLDLRPIREKVKETPVVQ*
Ga0181517_105035121	3300014160	Bog	MSGDTHIDKVETDGEDGLIVTFSDGTTCGYVVEELLDLRPIREKVKETPVVQ*
Ga0181532_102465921	3300014164	Bog	MDEEIEILEVEKDGKDGLIVTFSDGTRGGYVVEELLLLRPTRERVKEPVHST*
Ga0181535_103878771	3300014199	Bog	EDGLIVTFSDGTTCGYVVEELLDLRPIREKVKETPVVQ*
Ga0182018_101101082	3300014489	Palsa	MDEEIEILEVEKDGKDGLIVTFSDGTRGGYVVEELLLLRPTRERVKEPVHSA*
Ga0182014_1000454210	3300014491	Bog	MAEEIHILTVEKDGEDGLIVTFSDGTVAGYVVEELLLLRPLRERIEKPVDSN*
Ga0182014_100209804	3300014491	Bog	MAKEIHILKVEKNGEDGLIVTFSDGTLGGYVAEELLLLRPIREAVKEPVDSN*
Ga0182014_100256855	3300014491	Bog	MAEEIHILKVEKDGEDGLIVTFSDGTKAGYVVEELLLLRPLRETVKEPVDSN*
Ga0182014_100640104	3300014491	Bog	MAEKIHILKVEKDGEDGLIVTFSDGTIAGYVVEELLLLRPQREAVKEPVDSN*
Ga0182014_106423691	3300014491	Bog	MDEEIEILQVEKDGKHGLIVTFSDGTRGGYVVEELLLLRPARERVKEPVHFT*
Ga0182013_102697832	3300014492	Bog	MDEEIEILEVEKDGKDGLIVTFSDGTIGGYVVEELLLLRPTRERVKEPVHSA*
Ga0182013_104002362	3300014492	Bog	MSEVVEIISVEKDGKDGVIVTFSDGTIGAYVVEELLALRPNREPAEQPHAQSVS*
Ga0182013_104147091	3300014492	Bog	MEKDISILKLEKDGEDGLIVTFSDGTATGYVVEELLML
Ga0182017_109222471	3300014494	Fen	MSKHIQISDVEKDGEDGLLVMFSDGTIGGYVVEELLLLRPIR
Ga0182015_106407651	3300014495	Palsa	MTEVTKILKVEKDGEEGLIVTFTDGTTAGYVVEELLLLRPIREAVKEPVDLN*
Ga0182011_102668871	3300014496	Fen	MSDETHIDKVERDGEDGLIVTFSDGTTCGYVVEELLDLRPIRERVKETPVVQ*
Ga0182024_100063248	3300014501	Permafrost	MASEIHILKVEKDGEDGLIVTFSDGTTAGFVVEELLSLRPYRDAVE*
Ga0182024_103430672	3300014501	Permafrost	MASEIHILKVEMDGEDGLIVTFSDRTTGAYVVEELLSLRPHREAVKEPEDSN*
Ga0182024_104150681	3300014501	Permafrost	MKDEIRILDVESDAGDGVIVTFSDGTIGGYVVEELLEL
Ga0182024_106629452	3300014501	Permafrost	MDKEVEIEIEILKVEKDGKDGLIVTFSDGTIGGYVVEELLLLRPTRERVKELVDSK*
Ga0182024_110669611	3300014501	Permafrost	ILFAMGNEIHILKVEKDGEDGLIVTFSDGTIGGYVVEELLLLRPIREAVKEPVDSN*
Ga0182024_122795532	3300014501	Permafrost	VRQRGILFAMGNEIHILKVEKDGEDGLIVTFSDGTIGGYVVEELLLLRPIREAVKEPVDSN*
Ga0181516_102903611	3300014655	Bog	MHSMSSKIGILRAEVDGEDGVIVTFSDGTIGAYVAEELLELRPIRE
Ga0181519_102265911	3300014658	Bog	MSGEIHIDKVETDGEDGLLVTFSDGTTCGYVVEELLDLRPIREKVKETPVVQ*
Ga0182030_116920992	3300014838	Bog	AMDEEIEILQVEKDGKHGLIVTFSDGTRGGYVVEELLLLRPARERVKEPVHFT*
Ga0181503_12098081	3300016698	Peatland	HIDKVETDGEDGLIVTFSDGTTCGYVVEELLDLRPIRERVKETPVVQ
Ga0187847_101413612	3300017948	Peatland	MSGETHIDKVETDGEDGLIVTFSDGTTCGYVVEELLDLRPIRERVKETPVVQ
Ga0181520_100129345	3300017988	Bog	MSGEIHIDKVETDGEDGLLVTFSDGTTCGYVVEELLDLRPIRERVKETPLVQ
Ga0181520_106962743	3300017988	Bog	MSGETHIDKVETDGEDGLIVTFSDGTTCGYVVEELLDLRPIRERVKETP
Ga0181520_111223751	3300017988	Bog	KILKVEKDGEDGLIVTFSDGTIGGYVVEELLSLRPIREAVKDPVDTS
Ga0187867_107710681	3300018033	Peatland	MGILFVMTEAIRILNVEKDGEDGVIVTFSDGTLAGYVVDELLLLRPIREAVKEPVDSN
Ga0187863_102549662	3300018034	Peatland	MSGETHIDKVETDGEDGLIVTFSDGTTCGYVVEELLDLRPIRERVKEAPVVQ
Ga0187863_104616883	3300018034	Peatland	MAGEMRILEVEKDGEDGLIVTFSDGTIGAYVVEELLLLRPVREAAEEPKGQNHRQVQA
Ga0187863_105749771	3300018034	Peatland	MSGETHIDKVETDGEDGLIVTFSDGTTCGYVVEEL
Ga0187863_107367342	3300018034	Peatland	MSGEIHIDKVETDGEDGLLVTFSDGTTCGYVVEELLDLRPIRERVKE
Ga0187875_100917793	3300018035	Peatland	MTQDIKILKVEKDGEDGLIVTFSDGTIGGYVVEELLSLRPIREAVKDPVDTS
Ga0187875_104601321	3300018035	Peatland	MSGETHIDKVETDGEDGLIVTFSDGTTCGYVVEELLDLRPIRERVKEIPVVQ
Ga0187875_106964511	3300018035	Peatland	LFAMSEAIIILKVEKDGEDGVIVTFSDGTLAGYVVDELLLLRPIREAVKEPVDSN
Ga0187890_104303893	3300018044	Peatland	MSGEIHIDKVETDGEDGLLVTFSDGTTCGYVVEELLDLRPIRERVKETPVVQ
Ga0187852_14250751	3300019082	Peatland	MAEEIHILKVEKDGEDGLIVTFSDGTIGGYVVEELLLLRPIREAVKEPADSI
Ga0184585_1406191	3300019189	Soil	EILEVEKDGKDGLIVTFSDGTRGGYVVEELLLLRPTRERVKEPVHSA
Ga0210388_103816072	3300021181	Soil	MDGVIEIVHVEKDGTDGVIVTFSDKTTSAYVVEELLELRPCREPVTEPN
Ga0210388_111176551	3300021181	Soil	AFCQRDILFAMDAHLRILMVEKDGEDGLIVTFSDGTITGYVAEELLLLRPCRERAEEPVNSN
Ga0210390_113551101	3300021474	Soil	MVEKDGEDGLIVTFSDGTITGYVAEELLLLRPCRERAKEPV
Ga0224534_10056972	3300022524	Soil	MAEKIHILKVEKDGEDGLIVTFSDGTIAGYVVEELLLLRPQREAVKEPVDSN
Ga0212088_1000021382	3300022555	Freshwater Lake Hypolimnion	MDEEIEILEVEKDGKDGLIVTFSDGTRGGYVVEELLLLRPTRERVREPVNSA
Ga0224555_100457516	3300023088	Soil	MSGEIHILEVEQDGEDGLIVTFSDGTTCGYVVEELLDLRPIREAVKEIPPPSDRLSSNHHAPLLH
Ga0224555_10629402	3300023088	Soil	MDEEIEILEVEKDGKDGLIVTFSDGTRGGYVVEELLLLRPTRERVKEPVHSA
Ga0224559_11918462	3300023091	Soil	MTGQTNILDVEQDGEDGVLVTFSDGTIAGYVVDELLLLRPRRERVEELLNSDRPPPQKTS
Ga0224557_10174206	3300023101	Soil	LAACQGGILFVMAEEIHILKVEKDGEDGLIVTFSDGTKAGYVVEELLLLRPLRETVKEPVDSN
Ga0224525_10857821	3300023248	Soil	MSKHIQISDVEKDGEDGLLVMFSDGTIGGYVVEELLLLRPIRD
Ga0224547_10028401	3300023255	Soil	MASEIHILKVEMDGEDGLIVTFSDRTTGAYVVEELLSLRPHREAVKEPEDSN
Ga0224556_10392332	3300024295	Soil	HIDKFERDGEDGLIVTFSDGTTCGYVVEELLDLRPIRERVKETPVVQ
Ga0224556_11574272	3300024295	Soil	MSDETHIDKVERDGEDGLIVTFSDGTTCGYVVEELLDLRPIRERVKETPVV
Ga0208686_10778231	3300025500	Peatland	MSGDTHIDKVETDGEDGLLVTFSDGTTCGYVVEELLDLRPIREKV
Ga0208563_10674312	3300025501	Peatland	MAGEIHILEVEKDGEDGLIVTFSDGTIGGYVVEELLELRPIREAV
Ga0247846_10144681	3300026474	Soil	MAEEIHILTVEKDGEDGLIVTFSDGTVAGYVVEELLLLRPLRERIEKPVDSN
Ga0209167_103774032	3300027867	Surface Soil	MDAHLRILMVEKDGEDGLIVTFSDGTITGYVAEELLLLRPCRERAEEPVNSN
Ga0255354_10599381	3300028087	Soil	MDEEIEILEVEKDGKDGLIVTFSDGTRGGYVVEELLLLRPTREHVKEPVHSA
Ga0255354_10851151	3300028087	Soil	LFVMAEKIYILKVEKEGRDGLIVTFSDGTIAGYVVEELLLLRPQREAVNNSEDSK
Ga0302189_101043732	3300028788	Bog	MDEEIEILEVEKDGKDGLIVTFSDGTRGGYVVEELLLLRPTRERVKETVYS
Ga0302189_103694721	3300028788	Bog	EEIEILEVEKDGKDGLIVTFSDGTRGGYVVEELLLLRPTRERVKETVYSA
Ga0265338_107386121	3300028800	Rhizosphere	LSNMSGEIHILKVEQDGEDGLIVTFSDGTTCGYVVEELLEIRPIREAVKETAPAIN
Ga0302278_101401082	3300028866	Bog	MAIGIHVVGVEKGGEGGVVVTYSDGTVAGYVVEELLSLRPTRETIKE
Ga0302197_103732011	3300028873	Bog	MDEEIEILEIEKDGKDGLIVTFSDGTRGGYVVEELLLLRPTRE
Ga0311327_108972101	3300029883	Bog	MAKEIHILKVEKNGEDGLIVTFSDGTLGGYVAEELLLLRPIREDVKEPVDSN
Ga0311362_101691822	3300029913	Bog	MDEEIEILEVEKDGKDGLIVTFSDGTIGGYVVEELLLLRPTRERVKEPVHSA
Ga0311362_102463311	3300029913	Bog	SEWVAPPLEADPHILFAMAKEIHILKVEKNGEDGLIVTFSDGTLGGYVAEELLLLRPIREAVKEPVDSN
Ga0311342_106477142	3300029955	Bog	MDEEIEILEVEKDGKDGLIVTFSDGTRGGYVVEELLLLRPTRERVKEPV
Ga0311337_103719801	3300030000	Fen	MEKDISILKLEKDGEDGLIVTFSDGTATGYVVEELLM
Ga0311350_102537002	3300030002	Fen	MTNAVQITSVEQDGEDGLIVTFSDRTTGAYVVEELLMLRPIREEVKVPHHQRASHGPARQ
Ga0302186_102302431	3300030004	Bog	GNDGLIVTFSDGTTGAYVAEELLKLRPYREQEIPPVEHERPDQ
Ga0311344_101170222	3300030020	Bog	MAHEIQIVKVENDDGDGVIVTFSDGTISSYVVEELLE
Ga0311344_112974362	3300030020	Bog	ILEVEKDGKDGLIVTFSDGTRGGYVVEELLLLRPTRERVKEPVHSA
Ga0302195_101215022	3300030051	Bog	VEKDGKDGLIVTFSDGTRGGYVVEELLLLRPTRERVKEPVHSA
Ga0302195_103553001	3300030051	Bog	MAEQTHILKVEKDGEDGLLVTFSDGTLAGYVLEELLALRPLRERVEVTA
Ga0311333_100487345	3300030114	Fen	MRNAVQITSVEQDGEDGLIVTFSDRTTGAYVVEELLMLRPIREEVKVPHHQRASHGPARQ
Ga0311345_107112133	3300030688	Bog	MDEEIEILEIEKDGKDGLIVTFSDGTRGGYVVEELLLLRPTRERVKEPV
Ga0311335_101346313	3300030838	Fen	MEKDISILKLEKDGEDGLIVTFSDGTATGYVVEELLMLRPQREHV
Ga0265740_10225491	3300030940	Soil	VFAMVSKIHILKVEKDGEDGLIVTFSDGTTAGFVVEELLSLRPYRDAVDEPEDSDSPTH
Ga0311366_114324271	3300030943	Fen	RILKVEKDGEDGLFVAFSDGTKAGYVVEELIRLRPRRETSEEPLQSDWLHAIM
Ga0265760_100517141	3300031090	Soil	MVSKIHILKVEKDGEDGLIVTFSDGTTAGFVVEELLSLRPYRDAVDEPEDSDSPTH
Ga0302323_1025005062	3300031232	Fen	MTTSVQITGVEQDGEDGLIVTFSDRTTGAYVVEELLMLRPHREPAKLPNNQRVPHGPATH
Ga0265340_100510031	3300031247	Rhizosphere	MSGEIHILKVEQDGEDGLIVTFSDGTTCGYVVEELLEIRPIREAVKETAPAIN
Ga0265340_104706732	3300031247	Rhizosphere	MAGEIHILKVETDGEDGLIVTFSDGTICGYVVEELLELRPIREAVEETAPAAD
Ga0302140_109980241	3300031261	Bog	YEEIEILEVEKDGKDGLIVTFSDGTRGGYVVEELLLLRPTRERVKETVYSA
Ga0265316_106669493	3300031344	Rhizosphere	MDEEIEILEVEKDGKDGLIVTFSDGTRGGYVVEELLLLRPTRERVKEPVHFT
Ga0302320_107144341	3300031524	Bog	MDKEVEIEIEILKVEKDGKDGLIVTFSDGTIGGYVVEELLLLRPTRERVKELVDSK
Ga0302320_107995151	3300031524	Bog	MDEEIEILEVEKDGKDGLIVTFSDGTRGGYVVEELLLLRPTRERVKETVYSA
Ga0307375_101431302	3300031669	Soil	MDEEIEILEVEKDGKDGLIVTFSDGTRGGYVVEELLLLRPTRERVKEPVNSA
Ga0310686_1012845441	3300031708	Soil	EEIQILKVEKGGEDGVIVTSSDGTIGGYVVEELLLLRPTRERVKEPVHSA
Ga0310686_1168820932	3300031708	Soil	MDKEIKILKVEKDGEDGVIVTFSDGTIGGYIAEELLMLRPTRERVQEVEHPN
Ga0265342_101808302	3300031712	Rhizosphere	MITLFNMTDSIQITSVEQDGGDGLIVTFSDRTTGAYVVEELLELRPIRE
Ga0302319_110748591	3300031788	Bog	FQGDHRGKVEKDGKDGLIVTFSDGTIGGYVVEELLLLRPTRERVKELVDSK
Ga0348332_115125821	3300032515	Plant Litter	QTGILFAMDEEIEILEVEKDGKDGLIVTFSDGTRGGYVVEELLLLRPTRERVKEPVHSA
Ga0348332_142116311	3300032515	Plant Litter	HILKVEKDGEDGLIVTFSDGTTAGFVVEELLSLRPYRDAVDEPEDSDSPTH
Ga0326728_100066858	3300033402	Peat Soil	MSETILILNVEKDGEDGLIVTFSDGTIAGYVVEELLLLRPIREAVKEPASAD
Ga0326728_1002256611	3300033402	Peat Soil	MICMLNDIRILSVEKDGEDGLIVEFSDGTTGAYVVEELLLLRPCRQLGEELKRQKHRKPQQRTN
Ga0326728_103294302	3300033402	Peat Soil	MTKAISILKVEKDREDGVIVTFSDGTLAGYVAEELLLLRPIREAVKEPVDLI
Ga0326727_100140798	3300033405	Peat Soil	MGILLPMSETILILNVEKDGEDGLIVTFSDGTIAGYVVEELLLLRPIREAVKEPASAD
Ga0326727_103416002	3300033405	Peat Soil	MDGEIEILKVEQDGNDGLIVTFSDGTICGYVVEELLLLRPIREHVKEPVDPS
Ga0371487_0060500_2025_2150	3300033982	Peat Soil	MDEQIEILAVEKDGKDGLIVTFSDGTMGGYVVQELLLLRPVR
Ga0370492_0323418_19_177	3300034282	Untreated Peat Soil	MDSEIHIEKVEKDGEDGIMVTFSDEKTAGYVIEELLLLRPIREAIKMPLGAN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070868

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences