Metagenome / Metatranscriptome Family F070769

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070769
Family Type	Metagenome / Metatranscriptome
Number of Sequences	122
Average Sequence Length	81 residues
Representative Sequence	MARHRRPPLTVAPPPELLSFDPDEWPAGEWWQSCELWGRACMEFVKAHPGTELGSALDVLREQRRLYEAHRRSEWEAGLNGCAS
Number of Associated Samples	73
Number of Associated Scaffolds	122

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	67.77 %
% of genes near scaffold ends (potentially truncated)	42.62 %
% of genes from short scaffolds (< 2000 bps)	88.52 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (84.426 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (43.443 % of family members)
Environment Ontology (ENVO)	Unclassified (42.623 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.377 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.54% β-sheet: 0.00% Coil/Unstructured: 54.46%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 122 Family Scaffolds
PF01695	IstB_IS21	1.64
PF00476	DNA_pol_A	1.64
PF02754	CCG	1.64
PF13545	HTH_Crp_2	0.82
PF13191	AAA_16	0.82
PF06441	EHN	0.82
PF01494	FAD_binding_3	0.82
PF09992	NAGPA	0.82
PF01527	HTH_Tnp_1	0.82

COG ID	Name	Functional Category	% Frequency in 122 Family Scaffolds
COG0247	Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF	Energy production and conversion [C]	1.64
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.64
COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	Replication, recombination and repair [L]	1.64
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	1.64
COG2048	Heterodisulfide reductase, subunit B	Energy production and conversion [C]	1.64
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.82
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.82
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.82
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.43 %
All Organisms	root	All Organisms	15.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.43 %
cellular organisms	root	All Organisms → cellular organisms	15.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.43 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	15.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.43 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	14.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.43 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.43 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.43 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	3.28 %
Sporichthyales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales	0.82 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.82 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.43 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	3.28 %
Sporichthyaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae	0.82 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.82 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.43 %
unclassified Sporichthyaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae	0.82 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.82 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.82 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.43 %
Sporichthyaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	0.82 %
unclassified Actinomadura	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura	0.82 %
Frankia soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia soli	0.82 %
Mycobacterium asiaticum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium asiaticum	0.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.43 %
Actinomadura sp. HBU206391	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. HBU206391	0.82 %
Sporichthyaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	0.82 %
Frankia soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia soli	0.82 %
Mycobacterium asiaticum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium asiaticum	0.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664021\|ICCgaii200_c0852370	Not Available	2071	Open in IMG/M
3300000787\|JGI11643J11755_11770650	Not Available	1144	Open in IMG/M
3300000787\|JGI11643J11755_11833050	Not Available	1050	Open in IMG/M
3300009789\|Ga0126307_10414269	Not Available	1087	Open in IMG/M
3300009789\|Ga0126307_10911331	Not Available	710	Open in IMG/M
3300010036\|Ga0126305_10983485	Not Available	578	Open in IMG/M
3300010037\|Ga0126304_10440102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	873	Open in IMG/M
3300010038\|Ga0126315_10213963	Not Available	1165	Open in IMG/M
3300010038\|Ga0126315_10329573	Not Available	947	Open in IMG/M
3300010038\|Ga0126315_11206624	Not Available	514	Open in IMG/M
3300010038\|Ga0126315_11236636	Not Available	508	Open in IMG/M
3300010040\|Ga0126308_10751192	Not Available	673	Open in IMG/M
3300010042\|Ga0126314_10049136	Not Available	2732	Open in IMG/M
3300010042\|Ga0126314_10331206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1090	Open in IMG/M
3300010042\|Ga0126314_10390090	Not Available	1002	Open in IMG/M
3300010042\|Ga0126314_10415652	Not Available	970	Open in IMG/M
3300010042\|Ga0126314_10504290	Not Available	878	Open in IMG/M
3300010042\|Ga0126314_10594563	Not Available	807	Open in IMG/M
3300010042\|Ga0126314_11157766	Not Available	577	Open in IMG/M
3300010044\|Ga0126310_10152192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1474	Open in IMG/M
3300010045\|Ga0126311_10088311	Not Available	2100	Open in IMG/M
3300010045\|Ga0126311_10394469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1064	Open in IMG/M
3300010045\|Ga0126311_10736599	Not Available	790	Open in IMG/M
3300010045\|Ga0126311_11350467	Not Available	594	Open in IMG/M
3300010999\|Ga0138505_100000125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium asiaticum	4724	Open in IMG/M
3300012469\|Ga0150984_111115855	Not Available	1365	Open in IMG/M
3300012897\|Ga0157285_10382295	Not Available	502	Open in IMG/M
3300012911\|Ga0157301_10181592	Not Available	694	Open in IMG/M
3300012937\|Ga0162653_100000119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3979	Open in IMG/M
3300012939\|Ga0162650_100004162	Not Available	1630	Open in IMG/M
3300012939\|Ga0162650_100032785	Not Available	802	Open in IMG/M
3300018000\|Ga0184604_10357413	Not Available	520	Open in IMG/M
3300018028\|Ga0184608_10359884	Not Available	637	Open in IMG/M
3300018028\|Ga0184608_10480319	Not Available	533	Open in IMG/M
3300018051\|Ga0184620_10195746	Not Available	670	Open in IMG/M
3300018054\|Ga0184621_10160428	Not Available	809	Open in IMG/M
3300018066\|Ga0184617_1183673	Not Available	621	Open in IMG/M
3300018066\|Ga0184617_1280232	Not Available	502	Open in IMG/M
3300018465\|Ga0190269_11224039	Not Available	592	Open in IMG/M
3300018466\|Ga0190268_10633027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → unclassified Actinomadura → Actinomadura sp. HBU206391	767	Open in IMG/M
3300018466\|Ga0190268_10895437	Not Available	689	Open in IMG/M
3300019279\|Ga0184642_1317047	Not Available	771	Open in IMG/M
3300019869\|Ga0193705_1017791	Not Available	1549	Open in IMG/M
3300021078\|Ga0210381_10151721	Not Available	786	Open in IMG/M
3300021951\|Ga0222624_1204460	Not Available	952	Open in IMG/M
3300021951\|Ga0222624_1554282	Not Available	512	Open in IMG/M
3300022195\|Ga0222625_1313653	Not Available	571	Open in IMG/M
3300022694\|Ga0222623_10297522	Not Available	620	Open in IMG/M
3300022756\|Ga0222622_10554637	Not Available	826	Open in IMG/M
3300022756\|Ga0222622_11086774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	588	Open in IMG/M
3300022756\|Ga0222622_11111788	Not Available	581	Open in IMG/M
3300028707\|Ga0307291_1008026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	2271	Open in IMG/M
3300028707\|Ga0307291_1140198	Not Available	613	Open in IMG/M
3300028708\|Ga0307295_10104497	Not Available	765	Open in IMG/M
3300028708\|Ga0307295_10132475	Not Available	685	Open in IMG/M
3300028708\|Ga0307295_10201488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	564	Open in IMG/M
3300028710\|Ga0307322_10066485	Not Available	897	Open in IMG/M
3300028712\|Ga0307285_10086685	Not Available	816	Open in IMG/M
3300028714\|Ga0307309_10069407	Not Available	798	Open in IMG/M
3300028714\|Ga0307309_10106493	Not Available	674	Open in IMG/M
3300028715\|Ga0307313_10283082	Not Available	516	Open in IMG/M
3300028720\|Ga0307317_10014391	Not Available	2381	Open in IMG/M
3300028722\|Ga0307319_10217968	Not Available	626	Open in IMG/M
3300028744\|Ga0307318_10010025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3036	Open in IMG/M
3300028744\|Ga0307318_10149047	Not Available	802	Open in IMG/M
3300028744\|Ga0307318_10338358	Not Available	529	Open in IMG/M
3300028755\|Ga0307316_10075662	Not Available	1155	Open in IMG/M
3300028771\|Ga0307320_10213211	Not Available	756	Open in IMG/M
3300028778\|Ga0307288_10076797	Not Available	1188	Open in IMG/M
3300028778\|Ga0307288_10275256	Not Available	665	Open in IMG/M
3300028778\|Ga0307288_10370918	Not Available	579	Open in IMG/M
3300028784\|Ga0307282_10571321	Not Available	549	Open in IMG/M
3300028787\|Ga0307323_10131006	Not Available	903	Open in IMG/M
3300028791\|Ga0307290_10315391	Not Available	572	Open in IMG/M
3300028793\|Ga0307299_10070838	Not Available	1292	Open in IMG/M
3300028796\|Ga0307287_10280760	Not Available	630	Open in IMG/M
3300028799\|Ga0307284_10116237	Not Available	1012	Open in IMG/M
3300028811\|Ga0307292_10350335	Not Available	623	Open in IMG/M
3300028814\|Ga0307302_10327030	Not Available	755	Open in IMG/M
3300028819\|Ga0307296_10052463	Not Available	2154	Open in IMG/M
3300028819\|Ga0307296_10348978	Not Available	808	Open in IMG/M
3300028819\|Ga0307296_10557689	Not Available	627	Open in IMG/M
3300028819\|Ga0307296_10823356	Not Available	506	Open in IMG/M
3300028872\|Ga0307314_10114248	Not Available	750	Open in IMG/M
3300028872\|Ga0307314_10171587	Not Available	638	Open in IMG/M
3300028875\|Ga0307289_10131141	Not Available	1028	Open in IMG/M
3300028875\|Ga0307289_10249055	Not Available	731	Open in IMG/M
3300028876\|Ga0307286_10097937	Not Available	1028	Open in IMG/M
3300028876\|Ga0307286_10170499	Not Available	784	Open in IMG/M
3300028878\|Ga0307278_10012303	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3988	Open in IMG/M
3300028880\|Ga0307300_10159657	Not Available	713	Open in IMG/M
3300028881\|Ga0307277_10046024	Not Available	1771	Open in IMG/M
3300028881\|Ga0307277_10231204	Not Available	814	Open in IMG/M
3300028885\|Ga0307304_10426788	Not Available	601	Open in IMG/M
3300030990\|Ga0308178_1095577	Not Available	624	Open in IMG/M
3300031092\|Ga0308204_10064405	Not Available	929	Open in IMG/M
3300031094\|Ga0308199_1069760	Not Available	724	Open in IMG/M
3300031548\|Ga0307408_100188790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1659	Open in IMG/M
3300031548\|Ga0307408_101481996	Not Available	641	Open in IMG/M
3300031548\|Ga0307408_101529819	Not Available	632	Open in IMG/M
3300031548\|Ga0307408_101719221	Not Available	598	Open in IMG/M
3300031731\|Ga0307405_10513172	Not Available	963	Open in IMG/M
3300031731\|Ga0307405_11267573	Not Available	640	Open in IMG/M
3300031852\|Ga0307410_10020661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4033	Open in IMG/M
3300031852\|Ga0307410_10513722	Not Available	987	Open in IMG/M
3300031852\|Ga0307410_11196723	Not Available	662	Open in IMG/M
3300031901\|Ga0307406_10019028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4024	Open in IMG/M
3300031903\|Ga0307407_11720295	Not Available	500	Open in IMG/M
3300031995\|Ga0307409_100019200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	4621	Open in IMG/M
3300031995\|Ga0307409_100241577	All Organisms → cellular organisms → Bacteria	1644	Open in IMG/M
3300031995\|Ga0307409_100757908	Not Available	975	Open in IMG/M
3300031995\|Ga0307409_101827748	Not Available	637	Open in IMG/M
3300031996\|Ga0308176_10757113	Not Available	1012	Open in IMG/M
3300032002\|Ga0307416_100361030	Not Available	1475	Open in IMG/M
3300032002\|Ga0307416_100474269	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1310	Open in IMG/M
3300032002\|Ga0307416_102397210	Not Available	627	Open in IMG/M
3300032002\|Ga0307416_102490912	Not Available	616	Open in IMG/M
3300032004\|Ga0307414_11293643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia soli	676	Open in IMG/M
3300032005\|Ga0307411_10307000	Not Available	1275	Open in IMG/M
3300032126\|Ga0307415_100749311	Not Available	886	Open in IMG/M
3300032126\|Ga0307415_102376659	Not Available	521	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.33%
Host-Associated	Host-Associated	19.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.21%
Plants	Host-Associated → Plants	19.67%
Aquatic	Environmental → Aquatic	13.11%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.67%
Sediment	Environmental → Aquatic → Sediment	9.02%
Freshwater	Environmental → Aquatic → Freshwater	4.10%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	3.28%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.02%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.10%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	3.28%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	60.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.02%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.10%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	3.28%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.46%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	43.44%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	18.85%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	17.21%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.74%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	4.10%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.28%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	3.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.82%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.82%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_08523702	2228664021	Soil	MARHRRPPLSVVPPPELLAFDPGEWPAGEWWQSCELWGRACMAFVKAHPGSELGSPLSVLREKHRLYEERRRSLGRPG
JGI11643J11755_117706503	3300000787	Soil	MARHRRPPLTVAPPPELVSFDPDGWPAGEWWQSLELWGQARMEWVRAHPVSPLGTALDVLREKRRLSEARRRSQRVAG*
JGI11643J11755_118330503	3300000787	Soil	MARHRRPPLSVVPPPELLAFDPGEWPAGEWWQSCELWGRACMAFVKAHPGSELGSPLSVLREKHRLYEERRRSLGRPG*
Ga0126307_104142691	3300009789	Serpentine Soil	MATHRRPPLTVAPPTELMIFDPGEWPAGEWWQSFELWGQARLEFVREHKGTALGTALDVLREHRRIRGEHLGWK
Ga0126307_109113311	3300009789	Serpentine Soil	MVTLAMHRRSPLTVAPPPELVSFDPDEWPAEEWWQSCELWGAACMEWVKAHPGSPLGSALDVLREKHRLYEAKRQAANHQDGTPLIQPA
Ga0126305_109834851	3300010036	Serpentine Soil	MARHRRPPLTVAPPPELLSFDPDEWPAEEWWQSCELWGRACMAWVKAHPGSELGSALDVLREKRRIREQRRRLEWEAG*
Ga0126304_104401022	3300010037	Serpentine Soil	MARHRRPPLTAAPPERLLRFDPDEWPAGEWWQSCELWGAACMAWVKAHPGSELGSALNVLREKHRLYEARRRAEWEAGLGGAAS*
Ga0126315_102139632	3300010038	Serpentine Soil	MARHRRPPLTVAPPPELVIFNPDEWPAGEWWQSCELWGAACMAFVKAHPGSELGSALDVLRERRRMYEARRRSEWEAGLNGCAS*
Ga0126315_103295732	3300010038	Serpentine Soil	MARHRRPPLTVVPPPELLSFDPDEWPAEQWCQSCELWGAACMAFVKAHPGSELGSALDVLPEKHRLYEERRRSEWEAGLGGAAS*
Ga0126315_112066241	3300010038	Serpentine Soil	LLSFVLRQGGLMVAMHRRPPLTVAPPPELVTFDPDEWPGGEWGQSFELWGDARMAFVKAHPGSELGSALDVLPEKHRLYE
Ga0126315_112366361	3300010038	Serpentine Soil	GGLIVAMHRRPPLTVAPPPELLSFDPDEWPAGEWWQSLQLWGDARMAFVKAHPGSELGSALDVLREKRRLYEARRRSEWEAGPNGRAS*
Ga0126308_107511922	3300010040	Serpentine Soil	MARHRRPPLTVAPPPELVIFNPDEWPAGEWWQSCELWGRACMEFVKAHPGTELGSALDVLREKRRLYEARRRSEWEAGPNGRAS*
Ga0126314_100491366	3300010042	Serpentine Soil	MARHRRPPLTAVPPEKLLRFDPDEWPAEEWWQSCELWGRACMAFVKAHPGTELGSALDVLREQRRLYEARRRSKWEAELNGYAS*
Ga0126314_103312063	3300010042	Serpentine Soil	MATHRRPPLTVAPPPELVSFDPDEWPAGEWWQSLELWGQARMEWVKAHPGSPLGTALDVLREKRRLSEARRCSQRVAG*
Ga0126314_103900902	3300010042	Serpentine Soil	MARHRRPPLTVAPPPELVIFNPDEWPAGEWWQSCELWGAACMAFVKAHPGSELGSALDVLREKRRLYEARRRSEWEAGLNGRAS*
Ga0126314_104156522	3300010042	Serpentine Soil	MARHRRPPLTVAPPPELLSFDPDEWPAEEWWQSCELWGRACMAWVKAHPGTELGSALDVLREQRRMYEARRRSEWEAG*
Ga0126314_105042902	3300010042	Serpentine Soil	MARHRRPPLTVAPPPELVIFNPDEWPAEEWWQSCELWGRACMEFVKAHPGTELGSALDVLREQHRLYEAHRRSEWEAGPNGRAS*
Ga0126314_105945631	3300010042	Serpentine Soil	VAMHRRPPLTVAPPPELVTFDPDEWPGGEWWQSFELWGDARMAFVKAHPGSELGSALDVLREKRRIREQRRRSLWEAG*
Ga0126314_111577661	3300010042	Serpentine Soil	MARHRREALSVVPPPELLSFDPDEWPADQWWQSLELWGAACMAFVKAHPGSELGSALDVLREKRRLREAHRRSEWEAGLNGCAS*
Ga0126310_101521921	3300010044	Serpentine Soil	LLSFVLRQGGLMVAMHRRPPLTVAPPPELVTFDPDEWPGGEWWQSFELWGDARMAFVKAHPGSELGSALDVLREKRRIREQRRRSLWEAG*
Ga0126311_100883114	3300010045	Serpentine Soil	MARHRRPPLTAVPPEKLLRFDPDEWPAEEWWQSCELWGRACMAFVKAHPGTELGSALDVLREQRRLYEARRRSKWEAELNGCAS*
Ga0126311_103944694	3300010045	Serpentine Soil	VVPPPELLEFDPVEWPAEQWWQSCELWGAARMAFVKQHPGSELGSALDVLREKHRLYEARRRSEWEAG*
Ga0126311_107365991	3300010045	Serpentine Soil	LLSFVLRQGGLMVAMHRRPPLTVAPPPELVTFDPDEWPGGEWWQSFELWGDARMAFVKAHPGSELGSALDVLREKRRIREQRRRSEWKAG*
Ga0126311_113504671	3300010045	Serpentine Soil	ARHRRPPLTAVPPPELLQFDPDEWPAGEWWQSCELWGRACMAWVKAHPGSELGSALDVLREQHRLYEARRRSEWEAGLNGRAS*
Ga0138505_1000001255	3300010999	Soil	MATHRRPALTVAPPPELLSFDPDEWPAEKWWQSCELWGRARMEFVKRHPGTELGSPLTVLREKHRLYEAHRRFEWEASLNGHAP*
Ga0150984_1111158553	3300012469	Avena Fatua Rhizosphere	MARHRRPPLTVAPPPELVIFNPDEWPAGEWWQSCELWGRACMAFVKAHPGTELGSALDVLREQHGLYEAHRRSEWEARLNGRAS*
Ga0157285_103822952	3300012897	Soil	MATHRRPPLTVAPPPELVSFDPDEWPAGEWWQSLELWGQARMEWVKAHPGSPLGTALDVLREKRRLSEARRRSQRVAG*
Ga0157301_101815922	3300012911	Soil	MATHRRPPLTVAPPPELVSFDPDEWPAGEWWQSLELWGQARMEWVKTHPGSALDVLREKRRLSEARRRSQRVAG*
Ga0162653_1000001195	3300012937	Soil	MATHRRPALTVAPPPELLSFDPDEWPAEKWWQSYELWGRARMEFVKRHPGTELGSPLTVLREKHRLYEAHRRFEWEASLNGHAP*
Ga0162650_1000041621	3300012939	Soil	RPALTVAPPPELLSFDPDEWPAEKWWQSCELWGRARMEFVKRHPGTELGSPLTVLREKHRLYEAHRRFEWEASLNGHAP*
Ga0162650_1000327852	3300012939	Soil	RARGLIVAMHRRPPLVAAPPPELVVFDPDEWPAGEWWQSCELFGRARMAFVKQHPGSELGSALDVLREQHRLYEAHRRSEWEAGLNGRAT*
Ga0184604_103574132	3300018000	Groundwater Sediment	LTVVPPPELLSFDPSQWPAEQWWQSCELWGRACMEFVKAHPGSELGSALDVLRAKRRLYGAHRRLEWEAGLSGGAS
Ga0184608_103598842	3300018028	Groundwater Sediment	MARHRRPPLTVAPPPELVIFNPDEWPAGEWWQSCELWGAARMAFVKAHPDSALGSALDVLREKRRLSEARRRSQRVAG
Ga0184608_104803191	3300018028	Groundwater Sediment	VATHRRPPLTVAPPPELLSFDPDQWPAEKWWQSCELWGRACMAFVKAHPGSELGSALDVLRAKRRLYGAHRRLEWEAGLSGGAS
Ga0184620_101957462	3300018051	Groundwater Sediment	MATHRRPPLTAAPPPELLAFDPEEWPAAEWWQSCELWDQACMDWVKTHPGTELGSALDVLRAKRRLYGAHRRLEWEAGLNGGAS
Ga0184621_101604281	3300018054	Groundwater Sediment	TVVPPPELRSFDPDEWPAGEWWQSCELWGAARMAFVKAHPGSELGSALDVLREQHRLYEAHRRAEWEAGLNGRAS
Ga0184617_11836732	3300018066	Groundwater Sediment	MATHRRPPLTVAPPPELVSFDPDEWPAGEWWQSLELWGQARMEWVKAHPDSPLGTALDVLREKRRLSEARRRSQRVAG
Ga0184617_12802321	3300018066	Groundwater Sediment	MARHRRPPLTVVPPPELRSFDPDEWPAGEWWQSCELWGAARMAFVKAHPGSELGSALDVLRAKRRLYGAHRRLEWEAGLSGGAS
Ga0190269_112240392	3300018465	Soil	MATHRRPPLTVAPPPELVSFDPDEWPAGEWWQSLELWGQARMEWVKAHPGSPLGTALDVLREKRRLSEARRRSQRVAG
Ga0190268_106330273	3300018466	Soil	MATHRRPPLTVAPPPELVSFDPDEWPAGEWWQSLELWGRARMEWVNAHPGSPLGTALDVLREKRRLSEARRRSQRVAG
Ga0190268_108954371	3300018466	Soil	MARHRRPPLTVAPPPELLSFDPDEWPAEQWWQSCELWGAARMAFVKQHPGSELGSALDVLREKHRLYEERRRSLWEA
Ga0184642_13170472	3300019279	Groundwater Sediment	MARHRRPPLTAVPPERLLRFDPVEWPAGEWWQSCELWGRACMEFVKAHPGSELGSALDVLRAKRRLYGAHRRLEWEAGLSGGAS
Ga0193705_10177913	3300019869	Soil	MARHRRPPLTVVPPPELRSFDPDEWPAGEWWQSCELWGAARMAFVKAHPGSELGSALDVLREQHRLYEAHRRAEWEAGLNGRAS
Ga0210381_101517211	3300021078	Groundwater Sediment	MATHRRPPLQAAPPPELLRFDPDEWPADQWWQSCELWGRACMAFVKAHPGSELGSALDVLRAKRRLYGAHRRLEWEAGLSGGAS
Ga0222624_12044603	3300021951	Groundwater Sediment	MARHRRPPLTVVPPPELRSFDPDEWPAGEWWQSCELWGRACMAFVKAHPGSELGSALDVLRAKRRLYGAHRRLEWEAGLSGGAS
Ga0222624_15542821	3300021951	Groundwater Sediment	MARHRRPPLTVAPPPELVIFNLDEWPAEEWWQSCELWGRACMEFVKAHPGTELGSALDVLREQRRLYEAHRRSEWEAGLNGCAS
Ga0222625_13136532	3300022195	Groundwater Sediment	MARHRRPPLAAVPPPELLSFDPDEWPAGEWWQSCELWGAACMKWVKAHPGTELGSALDVLREQRRLYEARRRSEWEAGLNGCAS
Ga0222623_102975222	3300022694	Groundwater Sediment	GLGPVMARHRRPPLTVVPPPELRSFDPDEWPAGEWWQSCELWGAARMAFVKAHPGSELGSALDVLREQHRLYEAHRRAEWEAGLNGRAS
Ga0222622_105546371	3300022756	Groundwater Sediment	VATHRRPPLTVAPPPELLSFDPDEWPADQWWQSCELWGAACMKWVKQHPGSELGSALDVLRAKHRLYETRRRL
Ga0222622_110867742	3300022756	Groundwater Sediment	MATHRRPPLTVAPPPELLSFDPDEWPAGEWWQSCELWGRACMEFVKAHPGTELGSALDVLREQRRLYEAHRRSEWEAGLNGCAS
Ga0222622_111117881	3300022756	Groundwater Sediment	GLIMAMHRRPPLVAAPPEKLLRFDPDEWPAEQWWQSCELYGQACMAWVKTHPGSPLGTALDVLREKHRLYEEHRRAEWEASLGAFSPH
Ga0307291_10080262	3300028707	Soil	MAMHRRPPLVAAPPEKLLRFDPDEWPAEQWWQSCELYGQACMAWVKTHPGSPLGTALDVLREKHRLYEEHRRAEWEASLGAFNPH
Ga0307291_11401982	3300028707	Soil	MATHRRPPLQAAPPPELLRFDPDEWPAGEWWQSCELWGRACMAFVKAHPGSELGSALDVLRAKRRLYGAHRRLEWEAGLSGGAS
Ga0307295_101044972	3300028708	Soil	MATHRRPPLTVAPPPELLSFDPDEWPAGEWWQSCELWGAARMAFVKAHPDSALGSALDVLREQHRLFEARRRSEWEAGLNGCAS
Ga0307295_101324752	3300028708	Soil	MATHRRPPLQAAPPPELLRFDPDEWPADQWWQSCELWGRACMAFVKAHPGSELGSALDVLRAKRRLYGAHRRLEWEAGLNGRAS
Ga0307295_102014881	3300028708	Soil	MAMHRRPPLVAAPPEKLLRFDPDEWPAEQWWQSCELYGQACMAWVKTHPGSPLGTALDVLREKHRLYEEH
Ga0307322_100664852	3300028710	Soil	MATHRRPPLQAAPPPELLRFDPDEWPADQWWQSCELWGRPCMAFVKAHPGSELGSALDVLRAKRRLYGAHRRLEWEAGLSGGAS
Ga0307285_100866852	3300028712	Soil	MATHRRPPLQAAPPPELLRFDPDEWPAGEWWQSCELWGRACMAFVKAHPGSELGSALDVLRAKRRLYGAH
Ga0307309_100694071	3300028714	Soil	MAMHRRPPLVAAPPEKLLRFDPDEWPAEQWWQSCELYGQACMAWVKTHPGSPLGTALDVLREKHRLYEEHRRAEWEASLGAFSPH
Ga0307309_101064932	3300028714	Soil	MARHRRPPLTVVPPPELRSFDPDEWPAGEWWQSCELWGAARMAFVKAHPDSALGSALDVLREQHRLFEARRRSEWEAGLNGCAS
Ga0307313_102830822	3300028715	Soil	GAVMARHRRPPLTVAPPPELLSFDPGEWTADQWWQSVELWGRARMAWVKKHPNTRTEIGTALDVLQEQHRLYEAHRRAEWEAG
Ga0307317_100143914	3300028720	Soil	MARHRRPPLTAVPPEKLLRFDPVDWPAGEWWQSCELWGRACMAFVKANPGSELGSALDVLREQRRMYEAR
Ga0307319_102179682	3300028722	Soil	AVMARHRRPPLAVAPPPELLSFDPDEWPAGEWWQSCELWGAARMAFVKAHPGSALGSALDVLREKHRLYEVHRRSEWEAGLNGGAS
Ga0307318_100100251	3300028744	Soil	SLLSFGLRSGAVMARHRRPPLTAVPPEKLLRFDPVDWPAGEWWQSCELWGRACMAFVKANPGSELGSALDVLREQRRMYEARRRSEWEAG
Ga0307318_101490472	3300028744	Soil	MATHRRPPLTVAPPPELMIFDPDEWPAEQWWQSCELWGTACMAFVKAHPGSELGSPLDVLREKHRLYEERRRSLWEAGLNGYAS
Ga0307318_103383582	3300028744	Soil	VAMHRRPPLAAAPPEKLLRFDPDEWPAEQWWQSCELYGRACMKWVKTHPGSPLGTALDVLQEQHRLFEAHRRLEWEASLGAFSPH
Ga0307316_100756621	3300028755	Soil	MARHRRPPLTAVPPEKLLRFDPVDWPAGEWWQSCELWGRACMAFVKANPGSELGSALDVLREQRRMYEARRRSEWEAG
Ga0307320_102132111	3300028771	Soil	MARHRRPPLTVVPPPELRSFDPDEWPAGEWWQSCELWGAARMAFVKAHPGSELGSALDVLREQHRLYEA
Ga0307288_100767972	3300028778	Soil	MATHRRPPLQAAPPPELLRFDPDEWPADQWWQSCELWGRACMAFVKAHQGSELGSALDVLRAKRRLYGAHRRLEWEAGLSGGAS
Ga0307288_102752561	3300028778	Soil	TVAPPPELLSFDPGEWTADQWWQSVELWGRARMAWVKKHPNTRTEIGTALDVLQEQHRLYEAHRRAEWEAG
Ga0307288_103709181	3300028778	Soil	MAMHRRPPLTVAPPPELLSFDPDEWPAGEWWQSCELWGRACMEFVKAHPGTELGSALDVLREQRRLYEA
Ga0307282_105713212	3300028784	Soil	PPPELLEFDPDEWPAEQWWQSCELWGAARMAFVKQYPGSELGSAFDVLREKHRLYEERRRSLWEAGLNGYAS
Ga0307323_101310062	3300028787	Soil	MATHRRPPLQAAPPPELLRFDPDEWPADQWWQSCELWGRACMAFVKAHPGSELGSALDVLRAKRRLYGAHRRLEWEAGLSGGAA
Ga0307290_103153911	3300028791	Soil	AAHTKRQDSRAERRSLLMATHRKPPLTMVPPEKLLRFDPDEWPADQWWQSAELWGDACMAWVKAYPGSELGTALDVMRAKHLLYQAHRRSEWEAGLNGQAS
Ga0307299_100708381	3300028793	Soil	GCGLGPVMARHRRPPLTVVPPPELRSFDPDEWPAGEWWQSCELWGAARMAFVKAHPGSELGSALDVLREQHRLYEAHRRAEWEAGLNGRAS
Ga0307287_102807602	3300028796	Soil	MATHRRPPLQAAPPPELLRFHPDEWPADQWWQSCELWGRACMAFVKAHPGSELGSALDVLRAKRRLYGAHRRLEWEAGLSGGAS
Ga0307284_101162371	3300028799	Soil	GCGLGPVMARHRRPPLTVVPPPELRSFDPDEWPAGEWWQSCELWGRACMAFVKAHPGSELGSALDVLREQHRLYEAHRRAEWEAGLNGRAS
Ga0307292_103503352	3300028811	Soil	MARHRRPPSTVAPPPELMIFNPDEWPAGEWWQSCELWGRACMEFVKAHPGTELGSALDVLREQRRLYEAHRRSE
Ga0307302_103270303	3300028814	Soil	PPPELLSFDPDEWPAGEWWQSCELWGRACMAFVKAHPGSELGSALDVLRAKRRLYGAHRRLEWEAGLSGGAS
Ga0307296_100524635	3300028819	Soil	MARHRRPPLSVVPPPELLEFDPDEWPAEQWWQSCELWGAARMAFVKQYPGSELGSAFDVLREKHRLYEERRRSLWEAGLNGYAS
Ga0307296_103489782	3300028819	Soil	RRPPLTVAPPPELLSFDPDEWPAGEWWQSCELWGAARMAFVKAHPDSALGSALDVLREQHRLFEARRRSEWEAGLNGCAS
Ga0307296_105576891	3300028819	Soil	AAPPEKLLRFDPDEWPAEQWWQSCELYGQACMAWVKTHPGSPLGTALDVLREKHRLYEEHRRAEWEASLGAFSPH
Ga0307296_108233562	3300028819	Soil	MATHRRPPLTAAPPPELLAFDPEEWPAAEWWQSCELWDQACMDWVKTHPGTELGSALDVLRAKRRLREAHRRLEWETGLNGHAS
Ga0307310_100364711	3300028824	Soil	MAMHRRPPLVAAPPEKLLRFDPDEWPAEQWWQSCELYGQACMAWVKTHPGSPLGTALDVLREKHRL
Ga0307314_101142481	3300028872	Soil	MATHRRPPLTAAPPPELLAFDPEEWPAAEWWQSCELWDQACMDWVKTHPGTELGSALDVLRAKRRLREAHR
Ga0307314_101715871	3300028872	Soil	RLPEMATHRRPPLTVAPPPELLSFDPDEWPAGEWWQSCELWGRACMEFVKAHPGTELGSALDVLREQRVLYEARRRSEWEAG
Ga0307289_101311411	3300028875	Soil	HRRPPLQAAPPPELLRFDPDEWPADQWWQSCELWGRACMAFVKAHPGSELGSALDVLRAKRRLYGAHRRLEWEAGLSGGAS
Ga0307289_102490552	3300028875	Soil	MARHRRPPLTVAPPPELVIFNPDEWPAREWWQSCELWGRACMEFVKAHPGTELGSALDVLREQRRLYEAHRRSEWEAGLNGCAS
Ga0307286_100979372	3300028876	Soil	MATHRKPPLTMVPPEKLLRFDPDEWPADQWWQSAELWGDACMAWVKAYPGSELGTALDVMRAKHLLYQAHRRSEWEAGLNGQAS
Ga0307286_101704992	3300028876	Soil	MATHRRPPLQAAPPPELLRFDPDEWPADQWWQSCELWGRACMAFVKAHPGSELGSALDVLRAKRRLYGAH
Ga0307278_100123031	3300028878	Soil	LSFVLRGGVVMARHRRPPLSVVPPPELLEFDPDEWPAEQWWQSCELWGAARMAFVKQYPGSELGSAFDVLREKHRLYEERRRSLWEAGLNGYAS
Ga0307300_101596571	3300028880	Soil	RLPKMATHRRPPLQAAPPPELLVFDPDEWPADQWWQSCELWGRACMAFVKAHPGSELGSALDVLRAKRRLYGAHRRLEWEAGLSGGAS
Ga0307277_100460242	3300028881	Soil	MATHRRPPLTVAPPSELVSFDPDEWPAGEWWQSCELWGRACMEFVKAHPGSELGSALDVLREKRRLSEARRRSQRVAG
Ga0307277_102312042	3300028881	Soil	MARHRRPPLTVAPPPELLSFDPDEWPAGEWWQSCELWGRACMEFVKAHPGTELGSALDVLREQRRLYEAHRRSEWEAGLNGCAS
Ga0307304_104267881	3300028885	Soil	TAAPPPELLAFDPEEWPAAEWWQSCELWGQACMDWVKTHPGTELGSALDVLRAKRRLREAHRRLEWETGLNGHAS
Ga0308178_10955771	3300030990	Soil	MARHRRPPLTVVPPPELRSFDPDEWPAGEWWQSCELWGRACMAFVKAHPGSELGSALDVLREQRRMYE
Ga0308204_100644052	3300031092	Soil	MAMHRRPPLTVAPPPELLSFDPDEWPAGEWWQSCELWGRACMEFVKAHPGSELGSALDVLRAKRRLYGAHRRLEWEAGLSGGAS
Ga0308199_10697602	3300031094	Soil	MARHRRPPLTVVPPPELRSFDPDEWPAGEWWQSCELWGRACMEFVKAHPGTELGSALDVLREQRRLYEAHRRSEWEAGLNGCAS
Ga0307408_1001887903	3300031548	Rhizosphere	VHRRPPLKVAPPPELLSFDPDEWPAGQWWQSLELWGQARMEWVKAHPDSPLGTTLDVVREKHRLYEERRRSLWEAGLNGYAS
Ga0307408_1014819962	3300031548	Rhizosphere	VALHRRPPLTVAPPPELVTFDPDDWPAEAWWQSFELWGDARMAFVKQHPGSELGSALDVLREKRRIREQRRRSQWEAG
Ga0307408_1015298192	3300031548	Rhizosphere	MARHRRPPLTVAPPPELVIFNPDEWPAGEWWQSCELWGRACMAWVKAHPGSELGSALDVLREQRRLYEARRRSKWEAELNGCAS
Ga0307408_1017192212	3300031548	Rhizosphere	MARHRRPPLTAVPPEKLLRFDTDKWPAGEWWQSCELWGRACMAWVKAHPGTELGSALDVLREQRRMYEARRRSEWEAG
Ga0307405_105131721	3300031731	Rhizosphere	MVAMHRRPPLTVAPPPELVTFDPDEWPGGEWWQSFELWGDARMAFVKAHPGSELGSALDVLREKRRIREQRRRSLWEAG
Ga0307405_112675732	3300031731	Rhizosphere	CLTPGLLSFVLRQGGLMVAMHRRPPLTVAPPPELVTFDPDEWPGGEWGQSFELWGDARMAFVKAHPGSELGSALDVLREKRRIREQRRRSLWEAG
Ga0307410_100206615	3300031852	Rhizosphere	MCLTPGLLSFVLRQGGLMVAMHRRPPLTVAPPPELVTFDPDEWPGGEWWQSFELWGDARMAFVKAHPGSELGSALDVLREKRRIREQRRRSLWEAG
Ga0307410_105137222	3300031852	Rhizosphere	VAMHRRPPLTVAPPPELVTFDPDEWPGGEWWQSFELWGDARMAFVKAHPGSELGSALDVLREKRRIREQRRRSLWEAG
Ga0307410_111967232	3300031852	Rhizosphere	MARHRRPPLTAVPPPELLRFDPDEWPAGEWWQSCELWGRACMAWVKAHPGSPLGTALDVLREKRRMYEARRRSEWEAGPNGRAS
Ga0307406_100190281	3300031901	Rhizosphere	VHRRPPLKVAPPPELLSFDPDEWPAGQWWQSLELWGQARMEWVKAHPDSPLGTTLDVVREKHRLYEERRRSLWEAGLGGAA
Ga0307407_117202951	3300031903	Rhizosphere	PEKLLRFDPDEWPAEEWWQSCELWGRACMAFVKAHPGTELGSALDVLREQHRLYEAHRRSEWEARQNGRAS
Ga0307409_1000192003	3300031995	Rhizosphere	MCLTPGLLSFVLRQGGLMVAMHRRPPLTVAPPPELVTFDPDEWPGGEWGQSFELWGDARMAFVKAHPGSELGSALDVLREKRRIREQRRRSLWEAG
Ga0307409_1002415774	3300031995	Rhizosphere	MCLTPGLLSFVLRDGVVMARHRRPPLTVVPPPELLSFDPDEWPAEQWWQSCELWGAARMAFVKQHPGSELGSALDVLREKHRLYEARRRSEWEAG
Ga0307409_1007579082	3300031995	Rhizosphere	MARHRRPPLTVAPPSELVSFDPDEWPAGEWWQSLELWGQARMEWVKAHPGSPLGTALDVLREKRRLSEARRRSQRVAG
Ga0307409_1018277482	3300031995	Rhizosphere	MARHRRPPLTVAPPPELLSFDPDEWPAEEWWQSCELWGRACMAWVKAHPGTELGSALDVLREQRRMYEARRRSEWEAG
Ga0308176_107571132	3300031996	Soil	MARHRRPPSTVAPPELVIFNPDEWPAGEWWQSCELWGRACMEFVKAHPGTELGSALDVLREQRRLYEARRRSEWEAGLNG
Ga0307416_1003610303	3300032002	Rhizosphere	MARHRRPPLTVVPSPELLRFDPDEWPAEEWWQSCELWGRARMEFVKQHPGSPLGSALDVLREKHRLYEVHRREQWEAGLNGAAS
Ga0307416_1004742693	3300032002	Rhizosphere	MARHRRPPLTAVPPEKLLRFDPDEWPAEEWWQSCELWGRACMAFVKAHPGTELGSALDVLREQRRLYEARRRSKWEAELNGCAS
Ga0307416_1023972102	3300032002	Rhizosphere	MAVHCRLPLTVAPPPELMIFDPSEWPAEEWWQSCELWGRARMEFVKAHPGSELGSALDVLREKHRLYEAHRREQWEAGLGGYAS
Ga0307416_1024909122	3300032002	Rhizosphere	MARHRRPPLTVAPPPELVIFNPDEWPAGEWWQSCELWGRACMEFVKAHPGTELGSALDVLREQRRLHEARRRSEWEAGLNGYASLVSSD
Ga0307414_112936432	3300032004	Rhizosphere	GLLSFVLRQGGLMVAMHRRPPLTVVPPPELLEFDPVEWPAEQWWQSCELWGAARMAFVKQHPGSELGSPLTVLREKHRLYEERRRSLWEAGLGGAAS
Ga0307411_103070001	3300032005	Rhizosphere	APPPELLSFDPDEWPAGQWWQSLELWGQARMEWVKAHPDSPLGTTLDVVREKHRLYEERRRSLWEAGLNGYAS
Ga0307415_1007493111	3300032126	Rhizosphere	PLTVAPPPELVTFDPDEWPGGEWWQSFELWGDARMAFVKAHPGSELGSALDVLREKRRIREQRRRSLWEAG
Ga0307415_1023766592	3300032126	Rhizosphere	MARHRRPPLTAVPPPELLRFDPDEWPAGEWWQSCELWGRACMALVKAHPGSPLGTALDVLREKRRLSEAHRRSEWEAGLNGRAS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070769

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences