Metagenome / Metatranscriptome Family F070614

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070614
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	71 residues
Representative Sequence	MTSLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Number of Associated Samples	80
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	68.29 %
% of genes near scaffold ends (potentially truncated)	43.09 %
% of genes from short scaffolds (< 2000 bps)	87.80 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (76.423 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (24.390 % of family members)
Environment Ontology (ENVO)	Unclassified (45.528 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (72.358 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.41% β-sheet: 0.00% Coil/Unstructured: 40.59%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF08706	D5_N	47.15
PF03237	Terminase_6N	4.07
PF01068	DNA_ligase_A_M	2.44
PF00589	Phage_integrase	1.63
PF00239	Resolvase	0.81
PF07045	DUF1330	0.81
PF05063	MT-A70	0.81
PF06078	DUF937	0.81
PF14088	DUF4268	0.81
PF03551	PadR	0.81
PF00271	Helicase_C	0.81
PF13592	HTH_33	0.81
PF13751	DDE_Tnp_1_6	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	2.44
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	2.44
COG4725	N6-adenosine-specific RNA methylase IME4	Translation, ribosomal structure and biogenesis [J]	1.63
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.81
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.81
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.81
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.81
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.81
COG3753	Uncharacterized conserved protein YidB, DUF937 family	Function unknown [S]	0.81
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.42 %
Unclassified	root	N/A	23.58 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.42 %
Unclassified	root	N/A	23.58 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.42 %
Unclassified	root	N/A	23.58 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	52.85 %
Unclassified	root	N/A	23.58 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	45.53 %
Unclassified	root	N/A	23.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.58 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	19.51 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	12.20 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.58 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	8.13 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.32 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.07 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.58 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	8.13 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.07 %
Skermanella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	0.81 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.58 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	8.13 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.07 %
unclassified Rhodopseudomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → unclassified Rhodopseudomonas	0.81 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.81 %
Skermanella mucosa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella mucosa	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.58 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	8.13 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.07 %
Rhodopseudomonas sp. AAP120	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → unclassified Rhodopseudomonas → Rhodopseudomonas sp. AAP120	0.81 %
Bradyrhizobium sp. URHD0069	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	0.81 %
Skermanella mucosa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella mucosa	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459020\|G1P06HT01A6TEX	Not Available	567	Open in IMG/M
2228664022\|INPgaii200_c1021504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2891	Open in IMG/M
2228664022\|INPgaii200_c1023169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	981	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0741887	All Organisms → cellular organisms → Bacteria → Proteobacteria	1232	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10128687	Not Available	616	Open in IMG/M
3300000955\|JGI1027J12803_100440171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	688	Open in IMG/M
3300000955\|JGI1027J12803_100658072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	711	Open in IMG/M
3300000956\|JGI10216J12902_113863932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	551	Open in IMG/M
3300000956\|JGI10216J12902_118996481	Not Available	745	Open in IMG/M
3300004633\|Ga0066395_10727749	Not Available	591	Open in IMG/M
3300005332\|Ga0066388_100423126	All Organisms → cellular organisms → Bacteria	1975	Open in IMG/M
3300005332\|Ga0066388_100585652	All Organisms → cellular organisms → Bacteria	1740	Open in IMG/M
3300005332\|Ga0066388_102682860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	909	Open in IMG/M
3300005332\|Ga0066388_103885065	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300005332\|Ga0066388_105496126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	642	Open in IMG/M
3300005332\|Ga0066388_106900187	Not Available	572	Open in IMG/M
3300005363\|Ga0008090_10060785	Not Available	528	Open in IMG/M
3300005435\|Ga0070714_100558780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1096	Open in IMG/M
3300005439\|Ga0070711_101082278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	690	Open in IMG/M
3300005554\|Ga0066661_10279947	All Organisms → cellular organisms → Bacteria	1029	Open in IMG/M
3300005556\|Ga0066707_10709963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	629	Open in IMG/M
3300005713\|Ga0066905_100743936	All Organisms → cellular organisms → Bacteria → Proteobacteria	845	Open in IMG/M
3300005713\|Ga0066905_100884777	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300005764\|Ga0066903_100028312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6250	Open in IMG/M
3300005764\|Ga0066903_100046031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5234	Open in IMG/M
3300005764\|Ga0066903_100131048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3526	Open in IMG/M
3300005764\|Ga0066903_100323024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2466	Open in IMG/M
3300005764\|Ga0066903_100585851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1927	Open in IMG/M
3300005764\|Ga0066903_103102487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	899	Open in IMG/M
3300005764\|Ga0066903_103194744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	886	Open in IMG/M
3300005764\|Ga0066903_103434552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	854	Open in IMG/M
3300005764\|Ga0066903_103855262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	805	Open in IMG/M
3300005764\|Ga0066903_104388769	Not Available	753	Open in IMG/M
3300005764\|Ga0066903_105445989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	671	Open in IMG/M
3300005764\|Ga0066903_105787818	Not Available	649	Open in IMG/M
3300005764\|Ga0066903_106303276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	619	Open in IMG/M
3300006028\|Ga0070717_11733916	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300006163\|Ga0070715_10178924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1062	Open in IMG/M
3300006163\|Ga0070715_10238588	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300006854\|Ga0075425_100736878	All Organisms → cellular organisms → Bacteria	1131	Open in IMG/M
3300009090\|Ga0099827_10604825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	945	Open in IMG/M
3300009100\|Ga0075418_10187383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2203	Open in IMG/M
3300009147\|Ga0114129_12672637	Not Available	595	Open in IMG/M
3300009792\|Ga0126374_11478628	Not Available	556	Open in IMG/M
3300010043\|Ga0126380_10162747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1447	Open in IMG/M
3300010043\|Ga0126380_10312108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1125	Open in IMG/M
3300010046\|Ga0126384_11822771	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300010046\|Ga0126384_11935647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	562	Open in IMG/M
3300010047\|Ga0126382_10013906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3975	Open in IMG/M
3300010048\|Ga0126373_10863215	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300010048\|Ga0126373_11065741	Not Available	874	Open in IMG/M
3300010358\|Ga0126370_10264297	All Organisms → cellular organisms → Bacteria	1343	Open in IMG/M
3300010359\|Ga0126376_10066774	All Organisms → cellular organisms → Bacteria	2614	Open in IMG/M
3300010360\|Ga0126372_10790155	Not Available	939	Open in IMG/M
3300010360\|Ga0126372_12219407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	598	Open in IMG/M
3300010362\|Ga0126377_11777291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	692	Open in IMG/M
3300010366\|Ga0126379_10567451	All Organisms → cellular organisms → Bacteria → Proteobacteria	1216	Open in IMG/M
3300010366\|Ga0126379_10685291	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
3300010366\|Ga0126379_11600597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	757	Open in IMG/M
3300010376\|Ga0126381_104389809	Not Available	545	Open in IMG/M
3300010398\|Ga0126383_10497262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1277	Open in IMG/M
3300010398\|Ga0126383_10852995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	996	Open in IMG/M
3300010398\|Ga0126383_10964071	Not Available	940	Open in IMG/M
3300010398\|Ga0126383_12678785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	581	Open in IMG/M
3300010398\|Ga0126383_13021100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300010868\|Ga0124844_1196679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	739	Open in IMG/M
3300012211\|Ga0137377_10552881	Not Available	1089	Open in IMG/M
3300012948\|Ga0126375_10552992	Not Available	869	Open in IMG/M
3300012951\|Ga0164300_10199235	Not Available	979	Open in IMG/M
3300012971\|Ga0126369_10674046	Not Available	1110	Open in IMG/M
3300012971\|Ga0126369_11927270	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300012971\|Ga0126369_12116183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	650	Open in IMG/M
3300012971\|Ga0126369_13467722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella → Skermanella mucosa	517	Open in IMG/M
3300016270\|Ga0182036_11489659	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300016294\|Ga0182041_10071952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2435	Open in IMG/M
3300016294\|Ga0182041_10258519	Not Available	1421	Open in IMG/M
3300016319\|Ga0182033_10319175	All Organisms → cellular organisms → Bacteria → Proteobacteria	1288	Open in IMG/M
3300016341\|Ga0182035_10410129	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300016357\|Ga0182032_10105244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2001	Open in IMG/M
3300016387\|Ga0182040_11181315	Not Available	643	Open in IMG/M
3300016404\|Ga0182037_10717042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	857	Open in IMG/M
3300016445\|Ga0182038_11715403	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300016445\|Ga0182038_11812233	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300021168\|Ga0210406_10159563	All Organisms → cellular organisms → Bacteria	1890	Open in IMG/M
3300021560\|Ga0126371_10057093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3752	Open in IMG/M
3300021560\|Ga0126371_10497514	All Organisms → cellular organisms → Bacteria → Proteobacteria	1367	Open in IMG/M
3300021560\|Ga0126371_10516612	All Organisms → cellular organisms → Bacteria	1343	Open in IMG/M
3300025915\|Ga0207693_10409609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1060	Open in IMG/M
3300028799\|Ga0307284_10253825	Not Available	700	Open in IMG/M
3300028819\|Ga0307296_10222100	Not Available	1026	Open in IMG/M
3300031543\|Ga0318516_10009118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4727	Open in IMG/M
3300031544\|Ga0318534_10118780	All Organisms → cellular organisms → Bacteria	1519	Open in IMG/M
3300031561\|Ga0318528_10131306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1328	Open in IMG/M
3300031564\|Ga0318573_10267976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → unclassified Rhodopseudomonas → Rhodopseudomonas sp. AAP120	912	Open in IMG/M
3300031573\|Ga0310915_10486280	Not Available	877	Open in IMG/M
3300031640\|Ga0318555_10159609	All Organisms → cellular organisms → Bacteria → Proteobacteria	1209	Open in IMG/M
3300031681\|Ga0318572_10128790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1450	Open in IMG/M
3300031719\|Ga0306917_10746849	Not Available	768	Open in IMG/M
3300031744\|Ga0306918_11477457	Not Available	520	Open in IMG/M
3300031744\|Ga0306918_11525210	Not Available	510	Open in IMG/M
3300031751\|Ga0318494_10114905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1495	Open in IMG/M
3300031793\|Ga0318548_10231189	All Organisms → cellular organisms → Bacteria	908	Open in IMG/M
3300031833\|Ga0310917_10719700	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300031846\|Ga0318512_10378002	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300031860\|Ga0318495_10068683	All Organisms → cellular organisms → Bacteria → Proteobacteria	1578	Open in IMG/M
3300031879\|Ga0306919_10762521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	744	Open in IMG/M
3300031890\|Ga0306925_10033115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5293	Open in IMG/M
3300031890\|Ga0306925_11001413	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300031897\|Ga0318520_10084405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1752	Open in IMG/M
3300031912\|Ga0306921_11041987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	920	Open in IMG/M
3300031912\|Ga0306921_11265360	Not Available	818	Open in IMG/M
3300031941\|Ga0310912_11072799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	616	Open in IMG/M
3300031942\|Ga0310916_10323294	All Organisms → cellular organisms → Bacteria → Proteobacteria	1308	Open in IMG/M
3300031947\|Ga0310909_10078538	All Organisms → cellular organisms → Bacteria → Proteobacteria	2611	Open in IMG/M
3300032010\|Ga0318569_10572864	Not Available	526	Open in IMG/M
3300032041\|Ga0318549_10469318	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300032043\|Ga0318556_10189224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1069	Open in IMG/M
3300032054\|Ga0318570_10372686	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300032059\|Ga0318533_10185044	All Organisms → cellular organisms → Bacteria	1486	Open in IMG/M
3300032063\|Ga0318504_10010933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3147	Open in IMG/M
3300032064\|Ga0318510_10187334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	831	Open in IMG/M
3300032261\|Ga0306920_103054536	Not Available	630	Open in IMG/M
3300032261\|Ga0306920_103260728	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.75%
Host-Associated	Host-Associated	2.44%
Engineered	Engineered	0.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.75%
Plants	Host-Associated → Plants	2.44%
Solid Waste	Engineered → Solid Waste	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.44%
Grass	Engineered → Solid Waste → Grass	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	73.17%
Loam	Environmental → Terrestrial → Soil → Loam	23.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.44%
Composting	Engineered → Solid Waste → Grass → Composting	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	36.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.46%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.70%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.32%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.44%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.81%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	24.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.51%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	18.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.32%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.44%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.44%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.81%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.81%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459020	Litter degradation NP2	Engineered	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2NP_00372220	2170459020	Switchgrass, Maize And Mischanthus Litter	MTNLEPVARDKREYLLAELRAAVLRARLWQADIDAVGLALKAGLISSDQAVEHLSDCGVLRLLSLREQHEAAA
INPgaii200_10215041	2228664022	Soil	MTDLEAIARDKREYLLAELRAAALRARLWQSDIDAIGLALKAGLISPDQAVEHLADCGVLCLVGLREEQEAAA
INPgaii200_10231692	2228664022	Soil	MTDLEPIAHDKREYLLAELRAAALRARLWQADIDAIGLALKAGLISPDQAVEHLADCGVLCLVGLREEQEAAA
ICChiseqgaiiDRAFT_07418873	3300000033	Soil	TKDFTTMTDLEAIARDKREYLLAELRAAALRARLWQSDIDAIGLALKAGLISPDQAVEHLADCGVLCLVGLREEHGAAA*
AF_2010_repII_A1DRAFT_101286872	3300000597	Forest Soil	MTNLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP*
JGI1027J12803_1004401711	3300000955	Soil	LFAVRFKSQTTKDFTTMTDLEPIAHDKREYLLAELRAAALRARLWQADIDAIGLALKAGLISPDQAVEHLADCDVLCLVGLREEQEAAA*
JGI1027J12803_1006580722	3300000955	Soil	MTDLEAIARDKREYLLAELRAAALRARLWQSDIDAIGLALKAGLISPDQAVEHLADCGVLCLVGLREEHGAAA*
JGI10216J12902_1138639321	3300000956	Soil	MNTSEAVTRDRREYLLAELRAATLRARLWQADIDAVGVALKAGLISPDQAIEHLSDCGLLLLLGVRQEQEAAG*
JGI10216J12902_1189964811	3300000956	Soil	MTDLEPIARDKREYLLAELRTAALRTRLWQADIDTVGIALKAALISPDQAVEHLSDCGLLRLLGLREEQESAT*
Ga0066395_107277491	3300004633	Tropical Forest Soil	MTNLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLA
Ga0066388_1004231262	3300005332	Tropical Forest Soil	MRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP*
Ga0066388_1005856521	3300005332	Tropical Forest Soil	EYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAEREEQEAAP*
Ga0066388_1026828602	3300005332	Tropical Forest Soil	RDFTTMTDLTLVARDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGVREEQEVAS*
Ga0066388_1038850652	3300005332	Tropical Forest Soil	EYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGFLRLLAVREEQEAAP*
Ga0066388_1054961262	3300005332	Tropical Forest Soil	MTDLEPVVRDKREYLLAELRAAALRARLWQADIDAVGIALKAGLISPDQAVEHLSDCGLLRLLGLREEQEIAA*
Ga0066388_1069001871	3300005332	Tropical Forest Soil	MTNLKPVAQDKREYLLAELRAAALRARLWQADIDAIGLALKAQLISPDQAVEHLSDCGLLRLLGLRKEQEEAAA*
Ga0008090_100607852	3300005363	Tropical Rainforest Soil	MISSETVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP*
Ga0070714_1005587801	3300005435	Agricultural Soil	MTDLEPIARDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISADQAVEHLADCGVLCLVGLREEQRAAA*
Ga0070711_1010822781	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	IARDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISADQAVEHLADCGVLCLVGLREEQRAAA*
Ga0066661_102799472	3300005554	Soil	LLSELRCAALRARLWQSDIDTVGLALKARLISPDQAVEQLADCGVLRLLGLREEQEAAA*
Ga0066707_107099632	3300005556	Soil	MTDLEPIARDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISSDQAVEHLSDCGLLRLLGLRDEREAAA*
Ga0066905_1007439363	3300005713	Tropical Forest Soil	MISSETVTRDRREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLA
Ga0066905_1008847772	3300005713	Tropical Forest Soil	MTNLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQE
Ga0066903_1000283122	3300005764	Tropical Forest Soil	MTNLEPVAQDKREYLLAELRVAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVPHEQEAAP*
Ga0066903_1000460314	3300005764	Tropical Forest Soil	MATKTEYLLSELRCASLRARLLQSNVDAVGLALKAGLISPDEAVEYLADCGVLPLVGLREEQEQAA*
Ga0066903_1001310482	3300005764	Tropical Forest Soil	MEIATQKDFTRMIDLQTIARDRREYLLAELRAAALRARLWQADIDAVGLALKGGLISPDQAVEHLADCGVLCLVGLREGQEAAA*
Ga0066903_1003230246	3300005764	Tropical Forest Soil	MTNLEPVAQDKREYLLAELRAAAFRARLWQADIDAIGLALKAQLISPDQAVEHLSDCGLL
Ga0066903_1005858512	3300005764	Tropical Forest Soil	MNTSEAVTRDRREYLLAELRAATLRARLWQADIDAVGVALKAGLISPDQAIEHLSDCGLLRLLGVRQEQEPAG*
Ga0066903_1031024872	3300005764	Tropical Forest Soil	MISSETVTRDRREYLLAELRVAALRARLWQADIDAVGLALKAGLISPDQAVEYLSHCGLLRLLGLREEQEAAT*
Ga0066903_1031947442	3300005764	Tropical Forest Soil	MISSETVTRDGREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGFLRLLAVREEQEAAP*
Ga0066903_1034345522	3300005764	Tropical Forest Soil	MSDRREYLLAELRAAALRARLLQADIDAVGLALKAGLISPDQAIEHLSDCGLLHLVGLREEQEAA*
Ga0066903_1038552621	3300005764	Tropical Forest Soil	TSEAVTRDRREYLLAELRAATLRARLWQADIDVVGLALKAGLISRDQAVEHLSDCGLLRLLGLRVEQEAAA*
Ga0066903_1043887692	3300005764	Tropical Forest Soil	MTNLEPVERDKLEYLLAELRAAAPRARLWQADIDAVGLALKAGLISPDQAVEHLSDSGLLRLLAVHEEQEAAP*
Ga0066903_1054459892	3300005764	Tropical Forest Soil	MTDLTLVARDKREYLLAELRAAALRARLWQADIDAIGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQETAA*
Ga0066903_1057878182	3300005764	Tropical Forest Soil	MATKTEYLLSELRCASLRARLLQSNVDAVGLALKAGLISPDEAVEHLADCGVLPLVGLREEQEQAA*
Ga0066903_1063032761	3300005764	Tropical Forest Soil	DRRGLQKDFATMTDLEPVVRDKREYLLAELRAAALRARLWQADIDAVGIALKAGLISPDQAVEHLSDCGLLRLLGLREEQEIAA*
Ga0070717_117339161	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	FLLFDFKSQATKDFTTMTDLEAIARDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISSDQAVEHLADCGVLCLVGLREEHGAAA*
Ga0070715_101789242	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MSRHEYVLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLG
Ga0070715_102385882	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MPDLEAIARDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISADQAVEHLADCGVLCLVGLREEQRAAA*
Ga0075425_1007368782	3300006854	Populus Rhizosphere	MTDLEAIARDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISSDQAVEHLADCGVLCLVGLREEHGAAA*
Ga0099827_106048253	3300009090	Vadose Zone Soil	KIEYLLSELRCAALRARLWQSDIDTVGLALKARLISPDQAVEQLADCGVLRLLGLREEQEAAA*
Ga0075418_101873833	3300009100	Populus Rhizosphere	LHDLSLKAPGFAPGLFFLLFDFKSQATKDFTTMTDLEAIARDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISSDQAVEHLADCGVLCLVGLREEHGAAA*
Ga0114129_126726372	3300009147	Populus Rhizosphere	MITSETVTRDRREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP*
Ga0126374_114786281	3300009792	Tropical Forest Soil	MTSLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRL
Ga0126380_101627472	3300010043	Tropical Forest Soil	MITSETVTRDSREYLLAELRAATLRARLWQADIDVVGLALKAGLISPDQAVEHLSDCGLLRLLALREEQEAAP*
Ga0126380_103121082	3300010043	Tropical Forest Soil	MITSETVTRDRREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGFLRLLAVREEQEASP*
Ga0126384_118227712	3300010046	Tropical Forest Soil	DRREYLLAELRAAALRARLLQVDIDTVGLALKAGLISPDQAVERLFDYGLLHLVGVREEQEAA*
Ga0126384_119356471	3300010046	Tropical Forest Soil	MISSETVTRDGRYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAV
Ga0126382_100139066	3300010047	Tropical Forest Soil	MISSETVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGFLRLLAVREEQEAAP*
Ga0126373_108632152	3300010048	Tropical Forest Soil	VIGSATYVFEQFMNSRDFTTMTDLTLVARDKREYLLAELRAAALRARLWQADIDAIGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQETAA*
Ga0126373_110657411	3300010048	Tropical Forest Soil	MTSLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0126370_102642972	3300010358	Tropical Forest Soil	MTNLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLSRLLAVREEQEAAP*
Ga0126376_100667743	3300010359	Tropical Forest Soil	MTSLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP*
Ga0126372_107901552	3300010360	Tropical Forest Soil	MISSETVTRDRREYLLAELRAAALRARLWQVDIDAVGIALKAGLISPDQAVEHLSDCGLLRLLGLREEQEAAP*
Ga0126372_122194072	3300010360	Tropical Forest Soil	MISSETVTRDRREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEHEAAP*
Ga0126377_117772912	3300010362	Tropical Forest Soil	MISSETVTRDGREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGFLRLLAVREEQEASP*
Ga0126379_105674511	3300010366	Tropical Forest Soil	DKREYLFAELRAAALRARLWQADIDAVGLALKAGVISPDQAVEHLSDCGLLRLLAVPHEQEAAP*
Ga0126379_106852912	3300010366	Tropical Forest Soil	MISSETVTRDRREYLLAELRVAALRARLWQADIDAVGLALKAGLISPDQAVEHLSHCGLLRLLGLREEQEAAT*
Ga0126379_116005972	3300010366	Tropical Forest Soil	MISSETVTRDGRYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGFLRLLAVREEQEAAP*
Ga0126381_1043898091	3300010376	Tropical Forest Soil	MTNLEPVERDKREYLFAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLCDCGLLRLLAVGEEQEA
Ga0126383_104972621	3300010398	Tropical Forest Soil	MITSETVTRDSREYLLAELRAATLRARLWQADIDVVGLALKAGLISPDQAVEHLSDCGLLRLLA
Ga0126383_108529951	3300010398	Tropical Forest Soil	MISSETVTRDGRYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGFLRLLAVREE
Ga0126383_109640711	3300010398	Tropical Forest Soil	MISSETVTRDRREYLLAELRVAALRARLWQADIDAVGLALKAGLISPDQAVEHLSHCGLLRLLGLREEHEAAT*
Ga0126383_126787852	3300010398	Tropical Forest Soil	MISSEAVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDHGLLRLLAVREEQEAAP*
Ga0126383_130211001	3300010398	Tropical Forest Soil	MSDRREYLLAELRAAALRARLLQADIDAVGLALKAGLISPDQAVEHLCDCGLLHLVGVREEQEAA*
Ga0124844_11966792	3300010868	Tropical Forest Soil	MISSETVTRDGREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGFLRLLAVRE
Ga0137377_105528811	3300012211	Vadose Zone Soil	MITSETVTRDRREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEIAP*
Ga0126375_105529921	3300012948	Tropical Forest Soil	RMISSETVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGFLRLLAVREEQEASP*
Ga0164300_101992352	3300012951	Soil	MTDLEAIARDKREYLLVELRAAALRARLWQADIDAVGLALKAGLISSDQAVEHLADCGVLCLVGLREGQETAA*
Ga0126369_106740461	3300012971	Tropical Forest Soil	KADCFMATKTEYLLSELRCASLRARLLQSNVDAVGLALKAGLISPDEAVEYLADCGVLPLVGLREEQEQAA*
Ga0126369_119272701	3300012971	Tropical Forest Soil	MSDRREYLLAELRAAALRTRLLQADIDAVGLALKAGLISPDQAVEHLCDCGLLHLVGVREEQEAA*
Ga0126369_121161832	3300012971	Tropical Forest Soil	MISSETVTRDRREYLLAELRVAALRARLWQADIDVVGLALKAGLISRDQAVEHLSDCGLLRLLGLRVEQEAAA
Ga0126369_134677222	3300012971	Tropical Forest Soil	DLQTIARDRREYLLAELRAAALRARLWQADIDAVGLALKGGLISPDQAVEHLADCGVLCLVGLREGQEAAA*
Ga0182036_114896591	3300016270	Soil	CEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0182041_100719523	3300016294	Soil	MTNLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQEART
Ga0182041_102585192	3300016294	Soil	MSDRREYLLVELRAAALRRLLQADIDAVGLALKAGLISPDQAVEHLFDFGLLHLVGVREEQEAA
Ga0182033_103191751	3300016319	Soil	REYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQEATT
Ga0182035_104101291	3300016341	Soil	LLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQEATT
Ga0182032_101052441	3300016357	Soil	MTNLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLL
Ga0182040_111813151	3300016387	Soil	MNKGQRDFTTMTNLEPVVRDKREYLLAELRAAALRARLWQADIDAVGIALKAGLISPDQAVEHLSDCGLLRLLGLREEQEVAT
Ga0182037_107170422	3300016404	Soil	MISSEMVTRDRREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVKHLSHCGLLRLLGLREEQEAAT
Ga0182038_117154031	3300016445	Soil	NLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQEATT
Ga0182038_118122331	3300016445	Soil	EYLLAELRAAALRARLWQADIDAIGLALKAGLISPDQAVGHLSDCGLLRLLGLREEQETA
Ga0210406_101595632	3300021168	Soil	MTDLEAIARDKREYLLVELRAAALRARLWQADIDAVGLALKAGLISSDQAVEHLADCGVLCLVGLREGQETAA
Ga0126371_100570936	3300021560	Tropical Forest Soil	MISSETVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0126371_104975142	3300021560	Tropical Forest Soil	MSDRREYLLAELRAAALRARLLQADIDAVGLALKAGLISPDQAIEHLSDCGLLHLVGLREEQEAA
Ga0126371_105166121	3300021560	Tropical Forest Soil	MTNLEPVERDKREYLLAELRAATLRARLWQADIDVVGLALKAGLISPDQAVEHLSDCGLLRLLALREEQEAAP
Ga0207693_104096092	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MPDLEAIARDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISADQAVEHLADCGVLCLVGLREEQRAAA
Ga0307284_102538251	3300028799	Soil	NKREYLLAELRAAAVRARLWQAGIDAVELALKAGLISPDQAVEHLADCGVLPLVGLREEQEEAA
Ga0307296_102221001	3300028819	Soil	PRGFLFAVRFKSQTTTDFTTMTDLEPIARNKREYLLAELRAAAVRARLWQAGIDAVELALKAGLISPDQAVEHLADCGVLPLVGLREEQEEAA
Ga0318516_100091187	3300031543	Soil	MTNLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQEATT
Ga0318534_101187801	3300031544	Soil	ETVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0318528_101313061	3300031561	Soil	MTMTNLEPVARDKCEYLLAEFRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQEATT
Ga0318573_102679762	3300031564	Soil	MTMTNLEPVARDKCEYLLAEFRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQETAG
Ga0310915_104862802	3300031573	Soil	MTNLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVRAEQEAAP
Ga0318555_101596091	3300031640	Soil	FTNSRDFMTMTNLEPVARDKCEYLLAEFRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQETAG
Ga0318572_101287904	3300031681	Soil	YLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0306917_107468492	3300031719	Soil	MTNLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0306918_114774572	3300031744	Soil	MTNLEPVARDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISSDQAVEHLSDCGLLRLLGLREEQETVG
Ga0306918_115252102	3300031744	Soil	MTDLTLVARDKREYLLAELRAAALRARLWQADIDAIGLALKAGLISPDQAVGHLSDCGLLRLLGLREEQETAA
Ga0318494_101149054	3300031751	Soil	MISSETVTRDRREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0318548_102311892	3300031793	Soil	TVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0310917_107197002	3300031833	Soil	RMISSETVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0318512_103780022	3300031846	Soil	VTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0318495_100686831	3300031860	Soil	LLRMISSETVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0306919_107625211	3300031879	Soil	MISSEMVTRDRREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSHCGLLRLLGLREEQEAAT
Ga0306925_1003311510	3300031890	Soil	MTGSQRDRCEYLLAELSAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDWDLLRLLGLREEGPPP
Ga0306925_110014132	3300031890	Soil	MTNLEPVARDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGVREEQEVAS
Ga0318520_100844052	3300031897	Soil	MISSETVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLSVREEQEAAP
Ga0306921_110419874	3300031912	Soil	MISSEMVTRDRREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSHCGLLRLLGL
Ga0306921_112653602	3300031912	Soil	MTNVDPVARDKREYLLAELRAAALRARLLQADIDAVGLALKAGLISPDQAVEHLFDFGLLHLVGVREEQEAA
Ga0310912_110727991	3300031941	Soil	MISSEMVTRDRREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSHCGLLRLLGLREEQEA
Ga0310916_103232942	3300031942	Soil	VARDKCEYLLAEFRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQETAG
Ga0310909_100785383	3300031947	Soil	MISSETVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAVLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0318569_105728642	3300032010	Soil	MTNLEPVERDQREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQEATT
Ga0318549_104693181	3300032041	Soil	PFTKGFHRMTNLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLGLREEQEATT
Ga0318556_101892241	3300032043	Soil	MTNLEPVERDKREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLL
Ga0318570_103726862	3300032054	Soil	DRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0318533_101850441	3300032059	Soil	LTRMTGSQRDRCEYLLAELSAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDWDLLRLLGLREEGPPP
Ga0318504_100109335	3300032063	Soil	MISSETVTRDRCEYLLTELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0318510_101873342	3300032064	Soil	LRMISSETVTRDRCEYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP
Ga0306920_1030545361	3300032261	Soil	MTNVDPVARDKREYLLAELRAAALRARLLQADIDAVGLALKAGLISPDQAVEHLFDFGLLHLVGVREEQEA
Ga0306920_1032607282	3300032261	Soil	MTNLEPVERDQREYLLAELRAAALRARLWQADIDAVGLALKAGLISPDQAVEHLSDCGLLRLLAVREEQEAAP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070614

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences