NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F070487

Metagenome Family F070487

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F070487
Family Type Metagenome
Number of Sequences 123
Average Sequence Length 71 residues
Representative Sequence CIPGSTRMQLQVRDVDATIAALKQAGGAVVSTGGTTVELPGRGGATTKVAIVREPSNLFLVLLQAAAPRPQ
Number of Associated Samples 104
Number of Associated Scaffolds 123

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.84 %
% of genes near scaffold ends (potentially truncated) 95.93 %
% of genes from short scaffolds (< 2000 bps) 90.24 %
Associated GOLD sequencing projects 89
AlphaFold2 3D model prediction Yes
3D model pTM-score0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (80.488 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere
(8.943 % of family members)
Environment Ontology (ENVO) Unclassified
(48.780 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(61.789 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 10.10%    β-sheet: 25.25%    Coil/Unstructured: 64.65%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.55
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 123 Family Scaffolds
PF13594Obsolete Pfam Family 2.44
PF00903Glyoxalase 1.63
PF03734YkuD 0.81
PF02515CoA_transf_3 0.81
PF00126HTH_1 0.81
PF03466LysR_substrate 0.81
PF13577SnoaL_4 0.81
PF01266DAO 0.81
PF07690MFS_1 0.81
PF00753Lactamase_B 0.81
PF12681Glyoxalase_2 0.81
PF11154DUF2934 0.81
PF03719Ribosomal_S5_C 0.81
PF00027cNMP_binding 0.81
PF13011LZ_Tnp_IS481 0.81
PF00856SET 0.81
PF12680SnoaL_2 0.81
PF00196GerE 0.81
PF13564DoxX_2 0.81
PF00756Esterase 0.81

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 123 Family Scaffolds
COG0098Ribosomal protein S5Translation, ribosomal structure and biogenesis [J] 0.81
COG1376Lipoprotein-anchoring transpeptidase ErfK/SrfKCell wall/membrane/envelope biogenesis [M] 0.81
COG1804Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferasesLipid transport and metabolism [I] 0.81
COG3034Murein L,D-transpeptidase YafKCell wall/membrane/envelope biogenesis [M] 0.81


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms80.49 %
UnclassifiedrootN/A19.51 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004009|Ga0055437_10297952All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium536Open in IMG/M
3300004013|Ga0055465_10228498All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria620Open in IMG/M
3300004156|Ga0062589_100017355All Organisms → cellular organisms → Bacteria3277Open in IMG/M
3300005187|Ga0066675_11394492All Organisms → cellular organisms → Bacteria → Acidobacteria514Open in IMG/M
3300005328|Ga0070676_10121414All Organisms → cellular organisms → Bacteria → Proteobacteria1640Open in IMG/M
3300005329|Ga0070683_100198971All Organisms → cellular organisms → Bacteria → Acidobacteria1903Open in IMG/M
3300005330|Ga0070690_101287909All Organisms → cellular organisms → Bacteria585Open in IMG/M
3300005332|Ga0066388_100476055All Organisms → cellular organisms → Bacteria1888Open in IMG/M
3300005332|Ga0066388_105629472All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15634Open in IMG/M
3300005335|Ga0070666_10501795All Organisms → cellular organisms → Bacteria → Acidobacteria880Open in IMG/M
3300005353|Ga0070669_100279812All Organisms → cellular organisms → Bacteria → Proteobacteria1337Open in IMG/M
3300005354|Ga0070675_101991208All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium536Open in IMG/M
3300005364|Ga0070673_100784003Not Available879Open in IMG/M
3300005367|Ga0070667_100286390All Organisms → cellular organisms → Bacteria → Proteobacteria1481Open in IMG/M
3300005439|Ga0070711_101295910All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium632Open in IMG/M
3300005455|Ga0070663_101347195Not Available631Open in IMG/M
3300005456|Ga0070678_101472429All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium637Open in IMG/M
3300005466|Ga0070685_10373224All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales981Open in IMG/M
3300005466|Ga0070685_10963066All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300005546|Ga0070696_100190741All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1525Open in IMG/M
3300005564|Ga0070664_101247173Not Available702Open in IMG/M
3300005617|Ga0068859_100933349All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium952Open in IMG/M
3300005617|Ga0068859_101910251All Organisms → cellular organisms → Bacteria656Open in IMG/M
3300005618|Ga0068864_102160493All Organisms → cellular organisms → Bacteria → Acidobacteria563Open in IMG/M
3300005718|Ga0068866_11149556All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300005764|Ga0066903_103020485All Organisms → cellular organisms → Bacteria → Acidobacteria911Open in IMG/M
3300005840|Ga0068870_11278980All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium534Open in IMG/M
3300005843|Ga0068860_100435924All Organisms → cellular organisms → Bacteria1301Open in IMG/M
3300005843|Ga0068860_102166300All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300006173|Ga0070716_100585246All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium837Open in IMG/M
3300006237|Ga0097621_100084996All Organisms → cellular organisms → Bacteria → Proteobacteria2638Open in IMG/M
3300006638|Ga0075522_10033026All Organisms → cellular organisms → Bacteria3123Open in IMG/M
3300006755|Ga0079222_10373455All Organisms → cellular organisms → Bacteria977Open in IMG/M
3300006755|Ga0079222_10569368All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15854Open in IMG/M
3300006894|Ga0079215_11060640Not Available603Open in IMG/M
3300006904|Ga0075424_100840081Not Available980Open in IMG/M
3300006954|Ga0079219_10216841All Organisms → cellular organisms → Bacteria → Acidobacteria1103Open in IMG/M
3300009098|Ga0105245_10818986All Organisms → cellular organisms → Bacteria970Open in IMG/M
3300009101|Ga0105247_11172260All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium610Open in IMG/M
3300009143|Ga0099792_10149807All Organisms → cellular organisms → Bacteria → Acidobacteria1284Open in IMG/M
3300009147|Ga0114129_11139618All Organisms → cellular organisms → Bacteria974Open in IMG/M
3300009148|Ga0105243_11556444Not Available686Open in IMG/M
3300009156|Ga0111538_10258451All Organisms → cellular organisms → Bacteria → Acidobacteria2204Open in IMG/M
3300009162|Ga0075423_11558757All Organisms → cellular organisms → Bacteria709Open in IMG/M
3300009176|Ga0105242_13281075All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium503Open in IMG/M
3300009551|Ga0105238_12450378All Organisms → cellular organisms → Bacteria → Proteobacteria557Open in IMG/M
3300009553|Ga0105249_10287396All Organisms → cellular organisms → Bacteria → Acidobacteria1645Open in IMG/M
3300009792|Ga0126374_10873703All Organisms → cellular organisms → Bacteria → Acidobacteria694Open in IMG/M
3300010047|Ga0126382_10467813All Organisms → cellular organisms → Bacteria → Acidobacteria1004Open in IMG/M
3300010361|Ga0126378_10991264All Organisms → cellular organisms → Bacteria → Acidobacteria944Open in IMG/M
3300010366|Ga0126379_10050180All Organisms → cellular organisms → Bacteria3429Open in IMG/M
3300010397|Ga0134124_11826364All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium642Open in IMG/M
3300010401|Ga0134121_10793773All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium909Open in IMG/M
3300011428|Ga0137456_1056388All Organisms → cellular organisms → Bacteria947Open in IMG/M
3300011439|Ga0137432_1048802All Organisms → cellular organisms → Bacteria1272Open in IMG/M
3300012208|Ga0137376_10581578All Organisms → cellular organisms → Bacteria → Acidobacteria969Open in IMG/M
3300012208|Ga0137376_10862726All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15778Open in IMG/M
3300012232|Ga0137435_1107760All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium840Open in IMG/M
3300012469|Ga0150984_112984048All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium2740Open in IMG/M
3300012910|Ga0157308_10200525All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium673Open in IMG/M
3300012912|Ga0157306_10305926All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium585Open in IMG/M
3300012917|Ga0137395_10971558All Organisms → cellular organisms → Bacteria → Acidobacteria610Open in IMG/M
3300012948|Ga0126375_10318003All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1089Open in IMG/M
3300012948|Ga0126375_11915107All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium521Open in IMG/M
3300014326|Ga0157380_12954149Not Available541Open in IMG/M
3300015371|Ga0132258_10426461All Organisms → cellular organisms → Bacteria3301Open in IMG/M
3300015371|Ga0132258_12436839All Organisms → cellular organisms → Bacteria → Proteobacteria1310Open in IMG/M
3300015373|Ga0132257_100605944All Organisms → cellular organisms → Bacteria → Acidobacteria1354Open in IMG/M
3300015373|Ga0132257_103882414Not Available544Open in IMG/M
3300015374|Ga0132255_105370825All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium542Open in IMG/M
3300017947|Ga0187785_10646758All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium549Open in IMG/M
3300017993|Ga0187823_10312327All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium549Open in IMG/M
3300018064|Ga0187773_11152520All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium518Open in IMG/M
3300018476|Ga0190274_10181402All Organisms → cellular organisms → Bacteria → Proteobacteria1824Open in IMG/M
3300018476|Ga0190274_11049412All Organisms → cellular organisms → Bacteria892Open in IMG/M
3300019356|Ga0173481_10174707All Organisms → cellular organisms → Bacteria909Open in IMG/M
3300023069|Ga0247751_1024995All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium946Open in IMG/M
3300023102|Ga0247754_1167135All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium550Open in IMG/M
3300025567|Ga0210076_1104674All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium620Open in IMG/M
3300025862|Ga0209483_1252288All Organisms → cellular organisms → Bacteria → Acidobacteria680Open in IMG/M
3300025893|Ga0207682_10296376Not Available758Open in IMG/M
3300025893|Ga0207682_10523544All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium561Open in IMG/M
3300025918|Ga0207662_10469346All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium863Open in IMG/M
3300025918|Ga0207662_11374760All Organisms → cellular organisms → Bacteria → Proteobacteria501Open in IMG/M
3300025923|Ga0207681_10880663All Organisms → cellular organisms → Bacteria749Open in IMG/M
3300025924|Ga0207694_11384441All Organisms → cellular organisms → Bacteria → Proteobacteria595Open in IMG/M
3300025926|Ga0207659_10040712All Organisms → cellular organisms → Bacteria → Proteobacteria3251Open in IMG/M
3300025927|Ga0207687_11278139Not Available631Open in IMG/M
3300025931|Ga0207644_10876587All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15752Open in IMG/M
3300025931|Ga0207644_11242810Not Available626Open in IMG/M
3300025935|Ga0207709_10824423Not Available750Open in IMG/M
3300025937|Ga0207669_11736751All Organisms → cellular organisms → Bacteria533Open in IMG/M
3300025938|Ga0207704_11494735All Organisms → cellular organisms → Bacteria → Acidobacteria580Open in IMG/M
3300025939|Ga0207665_10648367All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium827Open in IMG/M
3300025940|Ga0207691_10969091Not Available710Open in IMG/M
3300025940|Ga0207691_11603354All Organisms → cellular organisms → Bacteria → Proteobacteria529Open in IMG/M
3300025944|Ga0207661_10594283All Organisms → cellular organisms → Bacteria1016Open in IMG/M
3300025944|Ga0207661_10651945Not Available968Open in IMG/M
3300025960|Ga0207651_12070617All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium511Open in IMG/M
3300025986|Ga0207658_10938580All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium788Open in IMG/M
3300026023|Ga0207677_11317830Not Available663Open in IMG/M
3300026067|Ga0207678_11388036Not Available621Open in IMG/M
3300026121|Ga0207683_11362113All Organisms → cellular organisms → Bacteria → Acidobacteria656Open in IMG/M
3300026121|Ga0207683_12175188All Organisms → cellular organisms → Bacteria → Acidobacteria503Open in IMG/M
3300028379|Ga0268266_10283485All Organisms → cellular organisms → Bacteria1541Open in IMG/M
3300028379|Ga0268266_10481749All Organisms → cellular organisms → Bacteria1183Open in IMG/M
3300028381|Ga0268264_10906128Not Available885Open in IMG/M
3300031238|Ga0265332_10128695All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1062Open in IMG/M
3300031854|Ga0310904_10749842Not Available679Open in IMG/M
3300031858|Ga0310892_10770285Not Available665Open in IMG/M
3300031910|Ga0306923_11933973All Organisms → cellular organisms → Bacteria601Open in IMG/M
3300031913|Ga0310891_10050081All Organisms → cellular organisms → Bacteria1168Open in IMG/M
3300032005|Ga0307411_12351162All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium501Open in IMG/M
3300032076|Ga0306924_11713594All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15658Open in IMG/M
3300032144|Ga0315910_11354673Not Available555Open in IMG/M
3300032770|Ga0335085_10639714All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1191Open in IMG/M
3300032783|Ga0335079_12131750All Organisms → cellular organisms → Bacteria → Acidobacteria537Open in IMG/M
3300032828|Ga0335080_11033135All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium835Open in IMG/M
3300033433|Ga0326726_10809637All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium907Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere8.94%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere7.32%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.88%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.88%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere4.88%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere4.06%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere4.06%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere4.06%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.25%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil3.25%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil3.25%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.25%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere3.25%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere3.25%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands2.44%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil2.44%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.44%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.44%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere2.44%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere2.44%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.44%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere2.44%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.63%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.63%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil1.63%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.63%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.63%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.63%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.63%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.81%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.81%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.81%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.81%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.81%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.81%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.81%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000953Soil microbial communities from Great Prairies - Kansas Corn soilEnvironmentalOpen in IMG/M
3300004009Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2EnvironmentalOpen in IMG/M
3300004013Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005455Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaGHost-AssociatedOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005466Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005718Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006638Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-AEnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006894Agricultural soil microbial communities from Utah to study Nitrogen management - NC ControlEnvironmentalOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300011428Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT615_2EnvironmentalOpen in IMG/M
3300011439Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2EnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012232Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2EnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012910Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2EnvironmentalOpen in IMG/M
3300012912Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2EnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017947Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MGEnvironmentalOpen in IMG/M
3300017993Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3EnvironmentalOpen in IMG/M
3300018064Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300019356Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)EnvironmentalOpen in IMG/M
3300023069Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S049-202B-5EnvironmentalOpen in IMG/M
3300023102Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5EnvironmentalOpen in IMG/M
3300025567Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025862Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)EnvironmentalOpen in IMG/M
3300025893Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025918Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025924Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025940Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025986Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026067Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026121Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300031238Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaGHost-AssociatedOpen in IMG/M
3300031854Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031913Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4EnvironmentalOpen in IMG/M
3300031940Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2EnvironmentalOpen in IMG/M
3300032005Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1Host-AssociatedOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032144Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soilEnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300033433Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MNEnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI11615J12901_1100473113300000953SoilAAIDTLKRHGGAVVSTGGTTVNLPGRGGATTKVAIVRDPDNLFLVLLQAAPQPPAPR*
Ga0055437_1029795213300004009Natural And Restored WetlandsRMQLQVRDVDATIATLKQAGGAVVSTGGTTVELPGRGGATTKVAIVRDPNNLFLVLLQAAAAAPATPTSLRVQ*
Ga0055465_1022849813300004013Natural And Restored WetlandsNIQDPGSTRIQLQVRDVDAAIDTLKRHGGAVVSTGGATVNLPGRGGATTKVAIVRDPDNLFLVLLQAAPPPPR*
Ga0062589_10001735513300004156SoilGNIQDPGSTRIQLQVRDVDAAIDALKRHGGTVASTGGTTVNLPGRGGATTKVAIVRDPDNLFLVLLQAAPPAPR*
Ga0066675_1139449213300005187SoilSTRMQIQVRDVDAAIAALKTAGGVVVSTGGATVDLPGRGGAVTKTAIVRDPNNLFLVLLQAAPPRPNP*
Ga0070676_1012141413300005328Miscanthus RhizosphereQVRDVDATIAALTKAGGTVVSAGGTTVELPGRGGATTRVAIVREPSNLFLVLLQAPAPAPVRGRE*
Ga0070683_10019897113300005329Corn RhizosphereGSTRMQLQVRDVDAAIAALKTSGGVVVSTGGNTVDLPGRGGATTKVAIVRDPNNLFLVLLQAR*
Ga0070690_10128790923300005330Switchgrass RhizosphereRGNIQDPGSTRIQLQVRDVDATIDALKRHGGAVASTGGTTVNLPGRGGATTKVAIVRDPDNLFLVLLQAAPPAPR*
Ga0066388_10047605513300005332Tropical Forest SoilDFKGVDRRNIRGTIQDPGSTRMQLQVRDVDAAIESLKAAGGAVVSTGGGTVELPGRGGATTKVAIVRDPNNLFLVLIQAAPARTP*
Ga0066388_10562947223300005332Tropical Forest SoilRDVDAAIDILKAAGGVVVSTGGNTVQLPGRGGATTKVAIVRDPNNLFLVLIQAPGPR*
Ga0070666_1050179513300005335Switchgrass RhizosphereKVVRGNIQDPGSTRMQLQVRDVEATIAALKQAGGAVVSTGGTTVELPGRGGATTKVAIVRDPNNLFLVLLQAAALAAPRPQ*
Ga0070669_10027981213300005353Switchgrass RhizosphereVRGNIQDPGSTRIQLQVRDVDAAIDALKRHGGTVASTGGTTVNLPGRGGATTKVAIVRDPDNLFLVLLQAAPPAPR*
Ga0070675_10016848013300005354Miscanthus RhizosphereATIAALKQAGGAVVSTGGTTVELPGRGGATTKVAIVRDPNNLFLVLLQAAAPAAPRPQ*
Ga0070675_10199120823300005354Miscanthus RhizosphereDPGSTRIQLQVRDVDATIDALKRHGGAVASTGGTTVNLPGRGGATTKVAIVRDPDNLFLVLLQTAAPAPR*
Ga0070673_10078400313300005364Switchgrass RhizosphereKDVDAAIETLKKHGGAVVSTGGTTVNLPGRGGATTKVAIVRDPDNLFLVLLQAAR*
Ga0070667_10028639023300005367Switchgrass RhizosphereSTRMQLQVRDVDATIAVLTKAGGMVVSAGGTTVELPGRGGATTKVAIVREPSNLFLVLLQAAAPRPQ*
Ga0070711_10129591023300005439Corn, Switchgrass And Miscanthus RhizosphereMQLQVRDVDAVIESLKAAGGAVVSTGGSTVDLPGRGGATTKVAIVRDANNLFLVLIQAAPAAARTP*
Ga0070663_10134719523300005455Corn RhizosphereGSTRIQLQVRDAQATIDAVKRLGGVPVSTGGGTVGLPGRGGATTTVGIVRDPNNLFLVLLQVAPK*
Ga0070678_10147242923300005456Miscanthus RhizosphereQVRDVDAAIAALKSAGGTVVSAGGATVELPGRGGATTKVAIVRDPNNLFVVLLQAAPPPPRP*
Ga0070685_1037322423300005466Switchgrass RhizosphereIQDPGSTRIQLQVRDVDATIAALKQAGGAVVSTGGATVELPGRGGATTKVAIVRDPDNLFLVLLQAAAPAAPRPQ*
Ga0070685_1096306613300005466Switchgrass RhizosphereSVRGSIQDPGSTRMQLQVRDVDEAVAMLKRDGGTVVSSGGTTVELPGRGGATTKVAIVRDPNNLFLVLLQAAPRPPEAR*
Ga0070696_10019074133300005546Corn, Switchgrass And Miscanthus RhizosphereDPGSTRIQLQMKDVDAAIETLKKHGGAVVSTGGTTVNLPGRGGATTKVAIVRDPDNLFLVLLQAAR*
Ga0070664_10124717323300005564Corn RhizosphereIQDPGSTRMQLQVRDVEATIAALKQAGGAVVSTGGTTVELPGRGGATTKVAIVREPSNLFLVLLQAAAPAAPRLQ*
Ga0068859_10093334913300005617Switchgrass RhizospherePGSTRIQLQVKDVDAAIETLKKHGGAVVSTGGTTVNLPGRGGATTKVAIVRDPDNLFLVLLQAAR*
Ga0068859_10191025123300005617Switchgrass RhizosphereDRKIVRGNIQDPGSTRIQLQVRDVDAAIDALKRHGGTVASTGGTTVNLPGRGGATTKVAIVRDPDNLFLVLLQAAPPAPR*
Ga0068864_10216049313300005618Switchgrass RhizosphereNLQDPGSTRMQIQVRDVDAAIAQLKAAGGVVQSTGGNTVDLPGRGGATTKVAIVRDPNNLFLVLLQAAAPAPARTP*
Ga0068866_1114955623300005718Miscanthus RhizosphereVRGNIQDPGSTRIQLQVRDVDAAIDALKRHGGAVASTGGTTVNLPGRGGATTKVAIVRDPDNLFLVLLQAAPPAPR*
Ga0066903_10302048513300005764Tropical Forest SoilVRDVDAAIESLKAAGGVVVSAGGGTVELPGRGGATTKVAIVRDPNNLFLVLIQTAGPR*
Ga0068870_1127898013300005840Miscanthus RhizosphereGSTRIQLQVKDVDAAIETLKKHGGAVVSTGGTTVNLPGRGGATTKVAIVRDPDNLFLVLLQAAR*
Ga0068860_10043592433300005843Switchgrass RhizosphereMQLQVRDVDATIAALKQAGGAVVSTGGTTVELPGRGGATTKVAIVRDPNNLFLVLLQAAAPAAPRPQ*
Ga0068860_10216630013300005843Switchgrass RhizosphereQLQVRDVDATIATLKQAGGAVVSTGGTTVELPGRGGATTKVAIVRDPSNLFLVLLQAAAPPAAPTALRVQ*
Ga0070716_10058524623300006173Corn, Switchgrass And Miscanthus RhizosphereRRTVRANIQDPGSTRMQLQIRDVDAAIATLKAAGGTVQSTGGATVDLPGRGGAVTKTAIVRDPNNLFLVLIQTAAR*
Ga0097621_10008499643300006237Miscanthus RhizosphereGNIQDPGSTRMQLQVRDVDATIAALTKAGGTVVSAGGTTVELPGRGGATTKVAIVREPSNLFLVLLQAPAPAPVRGRE*
Ga0075522_1003302653300006638Arctic Peat SoilNIQDPGSTRMQLQVRDIDATIAALKAAGGTVVSTGGTTAELPGRGGATTKVAIVRDPNNLFLVLIPAAPPRPTP*
Ga0079222_1037345513300006755Agricultural SoilKGVNGRVVKGDIQDPGSTRIQLQVRDVDATIAALKQAGGAVVSAGGTTVELPGRGGATTKVAIVRDPDNLFLVLLQAPRPQ*
Ga0079222_1056936813300006755Agricultural SoilNIQDPGSTRMQLQVRDVDATIDALKAAGGAVVSSGGTTVELPGRGGATTKVAIVRDPNNLFLVLIQAAPPKTP*
Ga0079215_1106064023300006894Agricultural SoilSARIQLQVRDVDATIAALKQAGGAVVSTGGSTVDLPGRGGATTKVAIVRDPDNLFLVLLQAPRP*
Ga0075424_10084008113300006904Populus RhizosphereVDAAIDVLKRHGGAVVSTGGATVNLPGRGGATTKVAIVRDPDNLFLVLLQAAPPAPPAQ*
Ga0079219_1021684113300006954Agricultural SoilMQLQVRDVGATIDALEAAGGTVVSTGGNTVDLPGRGGATTKVAIVRDPNNLFLVLIQAAPRP*
Ga0105245_1081898623300009098Miscanthus RhizosphereDVDATIAALKQAGGAVVSTGGTTVELPGRGGATTKVAIVREPSNLFLVLLQAAAPRPQ*
Ga0105247_1117226023300009101Switchgrass RhizosphereDPGSTRMQLQVRDVDATIAALTKAGGTVVSAGGTTVELPGRGGATTRVAIVREPSNLFLVLLQAPAPAPVRGRE*
Ga0099792_1014980733300009143Vadose Zone SoilFKGVDRKTVRANLQDPGSTRMQIQVRDVDATITALKAAGGVVQSTGGTTVELPGRGGATTKVAIVRDPNNLFLVLLQAAAPR*
Ga0114129_1113961813300009147Populus RhizosphereGNIQDPGSTRMQLQVKDVDAAIDTLKRHGGAVVSTGGTTVNLPGRGGATTKVAIVRDPDNLFLVLLQAAR*
Ga0105243_1155644423300009148Miscanthus RhizosphereTRMQLQVRDVDAAIAALKTSGGVVVSTGGATVDLPGRGGAVTKTAIVRDPNNLFLVLLQVAPPRTP*
Ga0111538_1025845123300009156Populus RhizosphereVRDVDATIAALKQAGGAVVSTGGTTVELPGRGGATTKVALVRDPDNLFLVLLEAAPAAPRNP*
Ga0075423_1155875713300009162Populus RhizosphereIDRRTVRGNIQDPGSTRIQLQVRDVDAAIETLKRHGGTVVSTGGATVNLPGRGGATTKVAIVRDPDNLFLVLLQAAPPAPAAK*
Ga0105242_1328107523300009176Miscanthus RhizosphereRGNIQDPGSTRMQLQVRDVDATIAALKQAGGAVVSTGGTTVELPGRGGATTKVALVRDPDNLFLVLLEAAPAAPRNP*
Ga0105238_1245037813300009551Corn RhizosphereQLQVRDVDAAVAALRQAGGTVVSAGGTTVELPGRGGATTKVAIVREPSNLFLVLLQAAAPRPQ*
Ga0105249_1028739623300009553Switchgrass RhizosphereGVDRRTVRGNIQDPGSTRMQLQVRDVNATIAALKQAGGAVVSTGGTTVELPGRGGATTKVALVRDPDNLFLVLLEAAPAAPRNP*
Ga0105249_1327041813300009553Switchgrass RhizosphereVDAAIDALTRHGGAVVSTGGTTVNLPGRGGATTKVAIVRDPDNLFLVLLQAAR*
Ga0126374_1087370323300009792Tropical Forest SoilRDVNATIDALKAAGGTVVSTGGSTVELPGRGGATTKVAIVRDPNNLFLVLIQAAPARTP*
Ga0126382_1046781323300010047Tropical Forest SoilGNIQDPGSTRMQVQVRDVDAAIESLKAAGGAVVSTGGATVDLPGRGGATTKVAIVRDPNNLFLVLIQTASPR*
Ga0126378_1099126413300010361Tropical Forest SoilMQLQVRDVDAAIDALKAAGGTVVSTGGSTVELPGRGGATTKVAIVRDPNNLFLVLLQAAPPRTP*
Ga0126379_1005018013300010366Tropical Forest SoilTVRANIQDPGSTRMQLQVRDVDATIDALKASGGSVVSTGGGTVELPGRGGATTKVAIVRDPNNLFLVLIQTAAPRTP*
Ga0134124_1182636423300010397Terrestrial SoilLQVRDVDATIAALKGAGGSVVSAGGSTVELPGRGGATTKVAIVRDPNNLFLVLLQAAPPAPKNP*
Ga0134121_1079377313300010401Terrestrial SoilRRVVRGNIQDPGSTRMQLQVRDVDAAIAALRQAGGTIVSSGGTTVELPGRGGASTKVAIVREPSNLFLVLLQAAAAPRPQ*
Ga0137456_105638813300011428SoilRIQLQVADVDAAIDVLKRHGGAVVSTGGTTVNLPGRGGATTKVAIVRDPDNLFLVLLQAAPPAR*
Ga0137432_104880233300011439SoilGSTRIQLQVRDVDATIDALKRHGGTVASTGGTTVNLPGRGGATTKVAIVRDPDNLFLVLLQAAPPAPR*
Ga0137376_1058157823300012208Vadose Zone SoilQDPGSTRMQIQVRDVDAAIAALKTAGGVVVSTGGATVDLPGRGGAVTKTAIVRDPNNLFLVLLQAAPPRPNP*
Ga0137376_1086272613300012208Vadose Zone SoilDAAITVLKAAGGVVVSTGGSPVDLPGRGGAVTKTVIVRDPDNLFLVLIQAAPPRTP*
Ga0137435_110776023300012232SoilRMVKSNLQDPGSTRIQLQVRDVDAVIAAVKAAGGSVQSTGGTTVDLPARGGTIKVAIVRDPDNLFLVLLQTAAPPRP*
Ga0150984_11298404853300012469Avena Fatua RhizosphereRSVERRVVRGNIQDPGSTRMQLQVRDVDATVAALTKAGGTVVSAGGTTVELPGRGGATTKVAIVREPSNLFLVLLQVAAAPRPE*
Ga0157308_1020052513300012910SoilVDRRMVKSNLQDPGSTRIQLQVRDVDAAVAAVKAAGGSVQSTGGAPVELPARGGTIKTAIVRDPDNLFLVLLQAAAPAR*
Ga0157306_1030592613300012912SoilDVDAAIDALKRHGGAVVSTGGTTVNLPGRGGATTKVAIVRDPDNLFLVLLQAAPPAPR*
Ga0137395_1097155813300012917Vadose Zone SoilTRMQIQVRDVDAAIAALKASGGTVVSTGGNTVDLPGRGGATTKVAIVRDPNNLFLVLLQAAPARGNP*
Ga0126375_1031800313300012948Tropical Forest SoilDFKSLDRRTVRGNLQDPGSTRMQLQVRDVDAAIESLKAAGGAVVSTGGGTVELPGRGGTTTKVAIVRDPDNLFLVLIQTAATR*
Ga0126375_1191510713300012948Tropical Forest SoilQVRDVDAVIELLKAAGGVVVSTGGGTVDLPGRGGATTKVAIVRDPNNLFLVLIQTAPTRTP*
Ga0157380_1295414923300014326Switchgrass RhizosphereDRRTVHGNIQDPGSTRIQLQVRDAQATIDAVKKLGGVPVSTGGGTVGLPGRGGATTTVGIVRDQNNLFLVLLQVAPK*
Ga0132258_1042646113300015371Arabidopsis RhizosphereGNIQDPGSTRMQLQVRDVDAALASLKEAGGTVVSTGGTTVELPGRGGATTKVAIVRDPNNLFLVLIQTAAPARTP*
Ga0132258_1243683933300015371Arabidopsis RhizosphereTRMQLQVRDVDATIAALKQAGGAVVSTGGTTVELPGRGGATTKVAIVRDPNNLFLVLLQAAAPAAPRPQ*
Ga0132257_10060594413300015373Arabidopsis RhizosphereRRVVRSSIQDPGSTRMQLQVRDVDEAIAMLKRDGGTVVSTGGNTVELPGRGGNTTKVAIVRDPNNLFLVLLQVAPQPPRNP*
Ga0132257_10388241413300015373Arabidopsis RhizosphereGNIQDPGSTRIQLQVRDAQATIDAVKKLGGVAVSTGGGTVGLPGRGGATTTVGIVRDPNNLFLVLLQVAPR*
Ga0132255_10537082523300015374Arabidopsis RhizosphereKGVDRKTVRANIQDPGSTRMQLQVRDVDATIDALKASGGTVISTGGNTVDLPGRGGATTKVAIVRDPNNLFLVLIQAAPRTQ*
Ga0187785_1064675813300017947Tropical PeatlandGSTRMQLQVRDVDATIEVLKAAGGAVVSTGGGTIELPGRGGATTKVAIVRDPNNLFLVLIQTAAAR
Ga0187823_1031232723300017993Freshwater SedimentPGSTRMQLQVRDVDAAIEVLKAAGGAVVSTGGRTIDLPGRGGATTKVAIVRDPNNLFLVLIQAAGNR
Ga0187773_1115252023300018064Tropical PeatlandRTVRGNIQDPGSTRMQLQVKDVDATIDVLKSAGGVVVSSGGSTVDLPGRGGATTKVAIVRDPNNLFLVLIQAAPRS
Ga0190274_1018140233300018476SoilGNIQDPGSTRMQLQVRDVDATIAALKQAGGAVVSTGGTTVELPGRGGATTKVAIVRDPSNLFLVLLQAAAPAAPRPQ
Ga0190274_1104941213300018476SoilPGSTRIQLQVRDVDATIAALKQAGGTVASTGGTTVELPGRGGATTKVAIVRDPDNLFLVLLQAPRP
Ga0173481_1017470723300019356SoilDVDAAIDALKRHGGTVASTGGTTVNLPGRGGATTKVAIVRDPDNLFLVLLQAAPPAPR
Ga0247751_102499523300023069SoilFKGVDRRMVKSNLQDPGSTRIQLQVRDVDAAVAAVKAAGGSVQSTGGAPVELPARGGTIKTAIVRDPDNLFLVLLQAAAPAR
Ga0247754_116713523300023102SoilKGGDRRMVKSNLQDPGSTRIQLQVRDVDAAVAAVKAAGGSVQSTGGAPVELPARGGTIKTAIVRDPDNLFLVLLQAAAPAR
Ga0210076_110467423300025567Natural And Restored WetlandsNIQDPGSTRIQLQVRDVDAAIDTLKRHGGAVVSTGGATVNLPGRGGATTKVAIVRDPDNLFLVLLQAAPPPPR
Ga0209483_125228823300025862Arctic Peat SoilSNIQDPGSTRMQLQVRDIDATIAALKAAGGTVVSTGGTTAELPGRGGATTKVAIVRDPNNLFLVLIPAAPPRPTP
Ga0207682_1029637613300025893Miscanthus RhizosphereRDVDATIAALKQAGGAVVSTGGATVELPGRGGATTKVAIVRDPDNLFLVLLQAAAPAAPRPQ
Ga0207682_1052354413300025893Miscanthus RhizosphereRDVDAAIDALKRHGGAVASTGGTTVNLPGRGGATTKVAIVRDPDNLFLVLLQAAPPAPR
Ga0207662_1046934623300025918Switchgrass RhizosphereRRTVRGNIQDPGSTRIQLQVRDVDAAIETLKRHGGTVVSTGGATVNLPGRGGATTKVAIVRDPDNLFLVLLQAAPPAPAAK
Ga0207662_1137476023300025918Switchgrass RhizosphereSTRMQLQVRDVDATIAALTKAGGTVVSAGGTTVELPGRGGATTKVAIVREPSNLFLVLLQAPAPAPVRGRE
Ga0207681_1088066323300025923Switchgrass RhizosphereVDRKIVRGNIQDPGSTRIQLQVRDVDAAIDALKRHGGTVASTGGTTVNLPGRGGATTKVAIVRDPDNLFLVLLQAAPPAPR
Ga0207694_1138444123300025924Corn RhizosphereQLQVRDVDATIAALTKAGGTVVSAGGTTVELPGRGGATTKVAIVREPSNLFLVLLQAAAPRPQ
Ga0207659_1004071253300025926Miscanthus RhizosphereGVDRKVVRGNIQDPGSTRMQLQVRDVDATIAALKQAGGAVVSTGGTTVELPGRGGATTKVAIVRDPNNLFLVLLQAAAPAAPRPQ
Ga0207687_1127813913300025927Miscanthus RhizosphereDVDATIAALKQAGGAVVSTGGTTVELPGRGGATTKVAIVREPSNLFLVLLQAAAPRPQ
Ga0207644_1087658723300025931Switchgrass RhizosphereGSTRMQLQVRDVDEAVAMLKRDGGAVVSSGGTTVELPGRGGATTKVAIVRDPNNLFLVLLQAAPRPPEGR
Ga0207644_1124281023300025931Switchgrass RhizosphereCIPGSTRMQLQVRDVDATIAALKQAGGAVVSTGGTTVELPGRGGATTKVAIVREPSNLFLVLLQAAAPRPQ
Ga0207709_1082442323300025935Miscanthus RhizosphereNIQDPGSTRMQLQVRDVDATIAALKQAGGAVVSTGGTTVELPGRGGATTKVAIVRDPNNLFLVLLQAAAPAPAAPSALRVQ
Ga0207669_1173675113300025937Miscanthus RhizosphereQDPGSTRIQLQVRDVDAAIDALKRHGGTVASTGGTTVNLPGRGGATTKVAIVRDPDNLFLVLLQAAPPAPR
Ga0207704_1149473523300025938Miscanthus RhizosphereDEAIAMLKRDGGTVVSTGGNTVELPGRGGNTTKVAIVRDPNNLFLVLLQVAPQPPRNP
Ga0207665_1064836713300025939Corn, Switchgrass And Miscanthus RhizosphereVRANIQDPGSTRMQLQIRDVDAAIATLKAAGGTVQSTGGATVDLPGRGGAVTKTAIVRDPNNLFLVLIQTAAR
Ga0207691_1096909113300025940Miscanthus RhizosphereVDRKVVRGNIQDPGSTRMQLQVRDVDATIAALKQAGGAVVSTGGTTVELPGRGGATTKVAIVRDPNNLFLVLLQAAAPAAPRPQ
Ga0207691_1160335413300025940Miscanthus RhizosphereSTRMQLQVRDVDATIAVLTKAGGMVVSAGGTTVELPGRGGATTKVAIVREPSNLFLVLFQAAAPRPQ
Ga0207661_1059428323300025944Corn RhizosphereMPRTFVWHPGKGPKTTPSKLQDPGSTRMQLQVRDVDAAIAALKTSGGVVVSTGGNTVDLPGRGGATTKVAIVRDPNNLFLVLLQAR
Ga0207661_1065194513300025944Corn RhizosphereMQLQVRDVDAAIAELAKAGGAVVSSGGTTVALPGRGGSTTNVAIVRDPDNLFL
Ga0207651_1207061713300025960Switchgrass RhizosphereRRMVKSNLQDPGSTRIQLQVRDVDAVIAAVKAAGGSVQSTGGTTVDLPARGGSIKVAIVRDPDNLFLVLLQTAAPPRP
Ga0207658_1093858013300025986Switchgrass RhizosphereGSTRMQLQVRDVDATIATLKQAGGAVVSTGGTTVELPGRGGATTKVAIVREPSNLFLVLLQAAPAAPRPQ
Ga0207677_1131783023300026023Miscanthus RhizosphereDATIAALKQAGGAVVSTGGTTVELPGRGGATTKVAIVRDPSNLFLVLLQAAAPAAPRPQ
Ga0207678_1138803623300026067Corn RhizosphereGSTRIQLQVRDAQATIDAVKKLGGVPVSTGGGTVGLPGRGGATTTVGIVRDPNNLFLVLLQVAPK
Ga0207683_1136211313300026121Miscanthus RhizosphereMQLQVRDVDAAIAALKSAGGTVVSAGGATVELPGRGGATTKVAIVRDPNNLFVVLLQAAPPPPRP
Ga0207683_1217518813300026121Miscanthus RhizosphereGNIQDPGSTRMQLQVRDVDAAIAALRQAGGTVVSSGGTTVELPGRGGATTRVAIVREPSNLFLVLLQAAAAPRPQ
Ga0268266_1028348513300028379Switchgrass RhizosphereRVVRGNIQDPGSTRMQLQVRDVDAAIAALRQAGGTVVSAGGTTVELPGRGGATTRVAIVREPSNLFLVLLQAAAAPRPQ
Ga0268266_1048174913300028379Switchgrass RhizosphereGGRVVKGDIQDPGSTRIQLQVRDVDATIAALKQAGGAVVSTGGATVELPGRGGATTRVAIVRDPDNLFLVLLQAAAPAAPRPQ
Ga0268264_1090612813300028381Switchgrass RhizosphereRGNIQDPGSTRMQLQVRDVDAAVAALRQAGGTVVSAGGTTVELPGRGGATTKVAIVREPSNLFLVLIQAAAAARPQ
Ga0265332_1012869513300031238RhizospherePGSTRMQLQVRDVDATIAGLKAAGGVVVSTGGTTAELPGRGGATTKVAIVRDPNNLFLVLIQAAPPRP
Ga0310904_1074984223300031854SoilVKGDIQDPGSTRIQLQVRDVDATIAALKQAGGAVVSAGGTTVELPGRGGATTKVAIVRDPDNLFLVLLQAPRPQ
Ga0310892_1077028523300031858SoilSNLQDPGSTRIQLQVRDVDAVIAAVKAAGGSVQSTGGTTVDLPARGGSIKVAIVRDPDNLFLVLLQTAAPPRP
Ga0306923_1193397323300031910SoilKTVPSRLQDPGSTRMQLLVRDVDRAIEALRRAGGSVVSTGGAAVELTGRAGGPPTKVAIVRDPNNLFVVLLQLPPAAPQQGSPSR
Ga0310891_1005008133300031913SoilFKGVDRKTVRGNIQDPGSTRIQLQVRDVDATIDALKRHGGTVASTGGTTVNLPGRGGATTKVAIVRDPDNLFLVLLQAAPPAPR
Ga0310901_1045474823300031940SoilVDAAIDSLKRHGGAVVSTGGTTVNLPGRGGATTKVAIVRDPDNLFLVLLQAAR
Ga0307411_1235116213300032005RhizosphereMGVDRRIVRGSIQDPGSTRIQLQVRDVDAAIEALKRSGGAVVSSGGATVNLPGRGGATTKVAIVRDPDNLFLVLLPAPR
Ga0306924_1171359423300032076SoilVDRRTVRANIQDPGSTRMQLQVRDVDAVIDLLKAAGGVVVSTGGGTVDLPGRGGATTKVAIVRDPNNLFLVLIQTAPTRTP
Ga0315910_1135467323300032144SoilIQLQVRDVDATIAALKQAGGAVVSTGGTTVELPGRGGATTKVAIVRDPDNLFLVLLQAPRPQ
Ga0335085_1063971423300032770SoilRMQLQVRDVDEAIAMLKRDGGMVVSTGGNTVELPGRGGATTKVAIVRDPNNLFLVLLQAAPQPPRNP
Ga0335079_1213175013300032783SoilGVDRKTTRANLQDPGSTRMQIQVRDVDATIAALKAAGGIVVSTGGSTVDLPGRGGATTKVAIVRDPNNLFLVLLQAQAR
Ga0335080_1103313523300032828SoilANIQDPGSTRMQLQVRDVDAAIEVLKGAGGAVVSTGGGTIDLPGRGGATTKVAIVRDPNNLFLVLIQTAPAR
Ga0326726_1080963713300033433Peat SoilGSTRMQLQVRDVDATIAALTKAGGTVVSAGGTTVELPGRGGATTKVAIVREPSNLFLVLLQAAVPRPQ


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.