Metagenome / Metatranscriptome Family F070475

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070475
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	88 residues
Representative Sequence	MRIGRLERAWGAEALRPAVGWKVWRVESGLLVSALYGDPWPVEEPIHAVCPRHDHEAPSPLCECGIHAGRELAAWEHYLRV
Number of Associated Samples	117
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	49.59 %
% of genes near scaffold ends (potentially truncated)	97.56 %
% of genes from short scaffolds (< 2000 bps)	90.24 %
Associated GOLD sequencing projects	115
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.699 % of family members)
Environment Ontology (ENVO)	Unclassified (30.081 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.341 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.76% β-sheet: 10.09% Coil/Unstructured: 76.15%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF12728	HTH_17	83.74
PF08281	Sigma70_r4_2	8.94
PF09190	DALR_2	2.44
PF04542	Sigma70_r2	1.63
PF00291	PALP	0.81
PF00588	SpoU_methylase	0.81
PF05991	NYN_YacP	0.81
PF07885	Ion_trans_2	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG0215	Cysteinyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.44
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.63
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.63
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.63
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.63
COG0219	tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain	Translation, ribosomal structure and biogenesis [J]	0.81
COG0565	tRNA C32,U32 (ribose-2'-O)-methylase TrmJ or a related methyltransferase	Translation, ribosomal structure and biogenesis [J]	0.81
COG0566	tRNA G18 (ribose-2'-O)-methylase SpoU	Translation, ribosomal structure and biogenesis [J]	0.81
COG3688	EndoRNase involved in mRNA decay, NYN (Nedd4-BP1/Rae1/YacP nuclease) family, contains PIN domain	Translation, ribosomal structure and biogenesis [J]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	97.56 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	97.56 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	60.16 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	26.02 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	60.16 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	26.02 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	60.16 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	9.76 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	1.63 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	60.16 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	9.76 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1.63 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	60.16 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	9.76 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1.63 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000881\|JGI10215J12807_1034879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2391	Open in IMG/M
3300000956\|JGI10216J12902_106968279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	776	Open in IMG/M
3300003911\|JGI25405J52794_10024981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	1223	Open in IMG/M
3300004157\|Ga0062590_101972860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	604	Open in IMG/M
3300005181\|Ga0066678_10952642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	559	Open in IMG/M
3300005332\|Ga0066388_101831113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	1080	Open in IMG/M
3300005340\|Ga0070689_101765281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	564	Open in IMG/M
3300005341\|Ga0070691_10068953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1713	Open in IMG/M
3300005355\|Ga0070671_101005977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	730	Open in IMG/M
3300005364\|Ga0070673_102349230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	507	Open in IMG/M
3300005440\|Ga0070705_100303111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1146	Open in IMG/M
3300005445\|Ga0070708_102233831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	505	Open in IMG/M
3300005446\|Ga0066686_10884298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	588	Open in IMG/M
3300005456\|Ga0070678_100167791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1785	Open in IMG/M
3300005468\|Ga0070707_101701677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	598	Open in IMG/M
3300005535\|Ga0070684_100505209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1120	Open in IMG/M
3300005536\|Ga0070697_101622598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	578	Open in IMG/M
3300005540\|Ga0066697_10506727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	684	Open in IMG/M
3300005545\|Ga0070695_100862265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	729	Open in IMG/M
3300005547\|Ga0070693_100015955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	3879	Open in IMG/M
3300005566\|Ga0066693_10123875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	952	Open in IMG/M
3300005569\|Ga0066705_10635080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	651	Open in IMG/M
3300005574\|Ga0066694_10352627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	697	Open in IMG/M
3300005578\|Ga0068854_100918884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	770	Open in IMG/M
3300005614\|Ga0068856_100758112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	991	Open in IMG/M
3300005618\|Ga0068864_101214715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	753	Open in IMG/M
3300005834\|Ga0068851_10725177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	613	Open in IMG/M
3300005887\|Ga0075292_1065789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	541	Open in IMG/M
3300005937\|Ga0081455_10017315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	6916	Open in IMG/M
3300006046\|Ga0066652_101897249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	535	Open in IMG/M
3300006173\|Ga0070716_101019459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	655	Open in IMG/M
3300006578\|Ga0074059_11895832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1131	Open in IMG/M
3300006606\|Ga0074062_10048732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1026	Open in IMG/M
3300006755\|Ga0079222_10923537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	736	Open in IMG/M
3300006791\|Ga0066653_10377933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	723	Open in IMG/M
3300006806\|Ga0079220_11684821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	553	Open in IMG/M
3300006847\|Ga0075431_101281124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	694	Open in IMG/M
3300006904\|Ga0075424_101020320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	882	Open in IMG/M
3300009012\|Ga0066710_101186811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1182	Open in IMG/M
3300009094\|Ga0111539_11589434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	758	Open in IMG/M
3300009098\|Ga0105245_10049417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3766	Open in IMG/M
3300009098\|Ga0105245_12746557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	545	Open in IMG/M
3300009162\|Ga0075423_10275302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1764	Open in IMG/M
3300009176\|Ga0105242_11056213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	823	Open in IMG/M
3300010145\|Ga0126321_1154733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	726	Open in IMG/M
3300010147\|Ga0126319_1652809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	654	Open in IMG/M
3300010154\|Ga0127503_11068254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	633	Open in IMG/M
3300010322\|Ga0134084_10279866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	613	Open in IMG/M
3300010335\|Ga0134063_10189065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	966	Open in IMG/M
3300010362\|Ga0126377_10273738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1654	Open in IMG/M
3300010362\|Ga0126377_10310912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	1557	Open in IMG/M
3300010362\|Ga0126377_13246509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	526	Open in IMG/M
3300010396\|Ga0134126_10234583	All Organisms → cellular organisms → Bacteria	2177	Open in IMG/M
3300010397\|Ga0134124_11079423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	818	Open in IMG/M
3300010403\|Ga0134123_11548844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	709	Open in IMG/M
3300011119\|Ga0105246_10564683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	977	Open in IMG/M
3300012201\|Ga0137365_10100249	All Organisms → cellular organisms → Bacteria	2180	Open in IMG/M
3300012209\|Ga0137379_10674446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	940	Open in IMG/M
3300012350\|Ga0137372_10101860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2408	Open in IMG/M
3300012355\|Ga0137369_10785997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	650	Open in IMG/M
3300012488\|Ga0157343_1024587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	570	Open in IMG/M
3300012501\|Ga0157351_1030071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	628	Open in IMG/M
3300012903\|Ga0157289_10111179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	797	Open in IMG/M
3300012907\|Ga0157283_10033484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1075	Open in IMG/M
3300012913\|Ga0157298_10006177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1813	Open in IMG/M
3300012915\|Ga0157302_10320219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	610	Open in IMG/M
3300012938\|Ga0162651_100017034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	962	Open in IMG/M
3300012958\|Ga0164299_10462116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	834	Open in IMG/M
3300012984\|Ga0164309_10585514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	869	Open in IMG/M
3300012986\|Ga0164304_10072153	All Organisms → cellular organisms → Bacteria	1965	Open in IMG/M
3300012988\|Ga0164306_10690002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	810	Open in IMG/M
3300012989\|Ga0164305_11863585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	545	Open in IMG/M
3300014497\|Ga0182008_10732125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	568	Open in IMG/M
3300015357\|Ga0134072_10176508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	722	Open in IMG/M
3300015372\|Ga0132256_102427757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	626	Open in IMG/M
3300017657\|Ga0134074_1138256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	848	Open in IMG/M
3300018061\|Ga0184619_10173370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	988	Open in IMG/M
3300018061\|Ga0184619_10294999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	744	Open in IMG/M
3300020070\|Ga0206356_11222021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	696	Open in IMG/M
3300021344\|Ga0193719_10056636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1700	Open in IMG/M
3300023069\|Ga0247751_1023476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	972	Open in IMG/M
3300024181\|Ga0247693_1000748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3890	Open in IMG/M
3300024224\|Ga0247673_1003559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1891	Open in IMG/M
3300024283\|Ga0247670_1062802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	674	Open in IMG/M
3300024290\|Ga0247667_1012849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1677	Open in IMG/M
3300024310\|Ga0247681_1081669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	517	Open in IMG/M
3300025910\|Ga0207684_10940138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	725	Open in IMG/M
3300025915\|Ga0207693_10228495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1461	Open in IMG/M
3300025920\|Ga0207649_11067652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	636	Open in IMG/M
3300025928\|Ga0207700_10026892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4019	Open in IMG/M
3300025933\|Ga0207706_10049366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	3719	Open in IMG/M
3300025944\|Ga0207661_10282348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	1484	Open in IMG/M
3300025960\|Ga0207651_11380269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	634	Open in IMG/M
3300026023\|Ga0207677_11048934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	741	Open in IMG/M
3300026035\|Ga0207703_11451160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	660	Open in IMG/M
3300026067\|Ga0207678_10787537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	839	Open in IMG/M
3300026075\|Ga0207708_10877885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	775	Open in IMG/M
3300026316\|Ga0209155_1286607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	511	Open in IMG/M
3300026550\|Ga0209474_10093800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2034	Open in IMG/M
3300026904\|Ga0207584_1004173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	625	Open in IMG/M
3300027909\|Ga0209382_11515594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	667	Open in IMG/M
3300028065\|Ga0247685_1004419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1845	Open in IMG/M
3300028379\|Ga0268266_12221325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	521	Open in IMG/M
3300028708\|Ga0307295_10059085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	997	Open in IMG/M
3300028778\|Ga0307288_10002117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	6181	Open in IMG/M
3300028778\|Ga0307288_10469326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	518	Open in IMG/M
3300028787\|Ga0307323_10224986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	677	Open in IMG/M
3300028790\|Ga0307283_10047328	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1015	Open in IMG/M
3300028814\|Ga0307302_10555658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	570	Open in IMG/M
3300028819\|Ga0307296_10794638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	516	Open in IMG/M
3300028878\|Ga0307278_10134583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	1109	Open in IMG/M
3300030904\|Ga0308198_1062994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	596	Open in IMG/M
3300031231\|Ga0170824_128720158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	757	Open in IMG/M
3300031421\|Ga0308194_10226252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	617	Open in IMG/M
3300031421\|Ga0308194_10245990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	598	Open in IMG/M
3300031548\|Ga0307408_101304138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	681	Open in IMG/M
3300031716\|Ga0310813_11590873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	610	Open in IMG/M
3300031820\|Ga0307473_10699079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	712	Open in IMG/M
3300031852\|Ga0307410_11041345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	707	Open in IMG/M
3300032005\|Ga0307411_10457021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	1070	Open in IMG/M
3300033551\|Ga0247830_10638316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	844	Open in IMG/M
3300034681\|Ga0370546_053351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	630	Open in IMG/M
3300034820\|Ga0373959_0217905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	511	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.98%
Host-Associated	Host-Associated	26.02%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.92%
Plants	Host-Associated → Plants	26.02%
Aquatic	Environmental → Aquatic	4.06%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.11%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.13%
Freshwater	Environmental → Aquatic → Freshwater	2.44%
Sediment	Environmental → Aquatic → Sediment	1.63%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.47%
Loam	Environmental → Terrestrial → Soil → Loam	13.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.57%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.32%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.32%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.44%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.63%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.81%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.81%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.20%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.32%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.50%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.06%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.44%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.63%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.81%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.81%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.06%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.25%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.25%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.25%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.25%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.44%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.44%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.44%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.44%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.44%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.44%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.63%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.63%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.63%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.81%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.81%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.81%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.81%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005887	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_403	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012488	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.yng.030610	Host-Associated	Open in IMG/M
3300012501	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300023069	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S049-202B-5	Environmental	Open in IMG/M
3300024181	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34	Environmental	Open in IMG/M
3300024224	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK14	Environmental	Open in IMG/M
3300024283	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11	Environmental	Open in IMG/M
3300024290	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08	Environmental	Open in IMG/M
3300024310	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK22	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A5-10 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028065	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK26	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300030904	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_202 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10215J12807_10348795	3300000881	Soil	MRIDRIERAWGAEALRPAVGWKVWRVEDGALLSVLYGDVWPVDEPVRATCRRHVHVAHEAPAIGCECGIHAGRELG
JGI10216J12902_1069682791	3300000956	Soil	MRTGRIERAWGAEALQPAVGWKVWRVEHGVLLSVLSGDRWPLDEPLRAACWRHDHEAPSPNCECGIYAGRELSAWGHYLAVGSE
JGI25405J52794_100249811	3300003911	Tabebuia Heterophylla Rhizosphere	MRIERIERAWGAEALRPAVGWKVWRVEDGALLSVLYGDVWPVDEPVRATCRRHVHVAHEAPAIGCECGIHAGRELGAWDHYLAIGAEERVFG
Ga0062590_1019728601	3300004157	Soil	MRIGRVESTWAEEALRPAVGWKVWRVENGLLRSVLYGDLWPVDEPVEAVCRRQLRSPHEAPSCGCECGIHAGRDLAAWDHYLTVGSEARVFGRVLLWGSTIQGAHGWRAAL
Ga0066678_109526421	3300005181	Soil	VKIGRLERAWGAEALQPVVGWKVWRVDEEARLRSVLYGDPWPVDEPVRAVCKRLLRSGHEAPARGCECGIHAGRELGAWEHYLAIDAESRV
Ga0066388_1018311133	3300005332	Tropical Forest Soil	MRIERIERAWGAEALRPAVGWKVWRVEDGALLSVLYGDLWPVDEPVHATCRRHVHVAHEAPALGCECGIHAG
Ga0070689_1017652811	3300005340	Switchgrass Rhizosphere	MRIGRLEREWAADALRPAVGWKVWRVADGQLVSVLYGNPWPVDEPIEASCFRHDHDAPARPCECGIHAGRELAAWEHYLHVGVESRV
Ga0070691_100689531	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MRTGRIEREWGAEALQPTVGWKVWRVENGLLVSVLYGDPWPVDEPLRATCIRHDHEAPARACECGIHAGRELAAWGHYLAVGAEARVFGR
Ga0070671_1010059771	3300005355	Switchgrass Rhizosphere	MRIGRVERTWGADALRPVVGWKVWRVEDGLLASVLYGDPWPVDEPIRAACARHRHDAPSPLCECGIH
Ga0070673_1023492302	3300005364	Switchgrass Rhizosphere	MRIGRLEREWAADALRPAVGWKVWRVADGQLVSVLYGNPWPVDEPIEASCFRHDHDAPARPCECGIHAGR
Ga0070705_1003031113	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MRIGRLERAWGAEALRPAVGWKVWRVESGLLVSALYGDPWPVEEPIHAVCPRHDHEAPSPLCECGIHAGRELAAWEHY
Ga0070708_1022338311	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VRIGRIAAAWGAEALRPAVGWKVWRVDEEARLRSVLYGDLWPVDEPVRATCRRVLRASHEAPSRGCECGIHAGRDLGAWDHYLAVERETRVFGRV
Ga0066686_108842981	3300005446	Soil	VRIGRIESAWGAEALRPAVGWKVWRVDEEARLLSVLYGDLWPVDEPVRATCRRVVHSSHEAPARGCECGIHAGRELGAWDHYLAIDAESRVFGRVLLWGSTLEGAHGWRAAEARPVEI
Ga0070678_1001677911	3300005456	Miscanthus Rhizosphere	MRVGRVEGAWGAEALRPAVGWKVWRVEDGLLKSVLYGDPWPADGPIEAACARHGHEAPAVACECGIHAGRTLEAWEHYLRVGAEARVFGRV
Ga0070707_1017016772	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VRIGRIAAAWGAEALRPAVGWKVWRVDEEAQLRSVLYGDLWPVDEPVRAICRRVLRSSHEAPSKGCECGIHAGRELGAWDHYLAVERETRVFGRVLLWGSTL
Ga0070684_1005052093	3300005535	Corn Rhizosphere	MRIGRLERAWAADALRPAVGWKVWRVEDGRLVSVLYGDPWPVDEPLEASCFRHAHEAPWQSCECGIHAGRELAAWEHYLHVGAESRVFGRVLLWGATI
Ga0070697_1016225982	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MRIGRLEREWAADALRPAVGWKVWRVADGQLVSVLYGNPWPVDEPIEASCFRHDHDAPARSCECGIHAGRELAAWEHYLHVGVESRVFGRVLLWGATVEGVH
Ga0066697_105067271	3300005540	Soil	MRIGRLERAWGAEALGPAVGWKVWRVENGLLVSVLYGDVWPVDEPIRAKCLRHEHEAPSPLCECGIHAGRELSAWAHYL
Ga0070695_1008622652	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MRIERIERAWGAEALRPAVGWKVWRVEDGALLSVLYGDVWPVDEPVRATCRRHVHVAHEAPAIGCECGIHAGRELSAWDHYLAVGAEARVFGRVLLWGAVLEGAT
Ga0070693_1000159551	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MRIGRLERAWGAEALRPAVGWKVWRVESGLLVSALYGDPWPVEEPIHAVCPRHDHEAPSPLCECGIHAGRELAAWEHYLRVGPESRVFGRVLL
Ga0066693_101238753	3300005566	Soil	MRTGRIERAWGAEALQPTVGWKVWRVDNGLLVSVLYGDPWPVDEPLQASCVRHDHDAPARACECGIHAGR
Ga0066705_106350801	3300005569	Soil	VRIGRIESAWGAEALRPAVGWKVWRVDEEARLLSVLYGDVWPVDEPVRATCRRVVHSSHEAPARGCECGIHA
Ga0066694_103526271	3300005574	Soil	MRTGRIERAWGAEALQPTVGWKVWRVENGLLVSVLYGDPWPVDEPLQATCVRHDHDAPARACECGIHAGRDLVAWG
Ga0068854_1009188842	3300005578	Corn Rhizosphere	MRVGRVERAWSAEALRPAVGWKVWRVEDGLLKSVLYGDPWPVDGPIEAACARHGHEAPAVACECGIHAGRTLEAWEHYLRVGAEARVFGRVLLWGATV
Ga0068856_1007581121	3300005614	Corn Rhizosphere	MRIGRLERAWGAEALRPAVGWKVWRVESGLLVSALYGDPWPVEEPIHAVCPRHDHEAPSPLCECGIHAGRT
Ga0068864_1012147151	3300005618	Switchgrass Rhizosphere	MRIGRLERAWAADALRPAVGWKVWRVEDGRLVSVLYGDPWPVDEPLEASCFRHAHEAPWQSCECGIHAGRELAAWEH
Ga0068851_107251772	3300005834	Corn Rhizosphere	MRVGRVERAWSAEALRPAVGWKVWRVEDGLLKSVLYGDPWPVDGPIEAACARHGHEAPAVACECGIHAGRTLEEWEHYLRVG
Ga0075292_10657892	3300005887	Rice Paddy Soil	MRIGRLERAWAADALRPAVGWKVWRVAEGRLVSVLYGDPWPVDGPIRASCFRHEHEAPSPSCECGIHAGRELAAWEHYLHVGAE
Ga0081455_100173151	3300005937	Tabebuia Heterophylla Rhizosphere	MRIERIERAWGAEALRPAVGWKVWRVEDGALLSVLYGDVWPVDEPVRATCRRHVHVAHEAPAIGCECGIHAG
Ga0066652_1018972492	3300006046	Soil	MRIGRLERAWGAEALGPAVGWKVWRVENGLLVSVLYGDVWPVDEPIRAKCLRHEHEAPSPLCECGIHAGRELSAWAHYLSVGAESRVFGR
Ga0070716_1010194591	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MRIGRLERAWGAEALRPAVGWKVWRVENGLLVSALYGDPWPVEEPIHAVCPRHDHEAPSPLCECGIHAGRELAAW
Ga0074059_118958321	3300006578	Soil	MRIGRLERAWAADALRPAVGWKVWRVAEGQLVSVLYGNPWPFDEPIEASCFRHEHEAPARSCECGIHAGRELDAWEHYLNVGAES
Ga0074062_100487323	3300006606	Soil	MRIGRLERAWAADALRPAVGWKVWRVAEGQLVSVLYGNPWPFDEPIEASCFRHEHEAPARSCECGIHAGRE
Ga0079222_109235373	3300006755	Agricultural Soil	MRIGRLERAWGAQALRPAVGWKVWRVESGLLVSALYGDPWPVEEPIHAVCPRHDHEAPSPLCECGIHAGR
Ga0066653_103779331	3300006791	Soil	MRTGRIERAWGAEALQPTVGWKVWRVENGLLVSVLYGDPWPVDEPLQATCVRHDHDAPARACECGIHAGRDLVAWGHYLNVGVESRVFGRV
Ga0079220_116848212	3300006806	Agricultural Soil	MRIGRLERAWGAEALRPAVGWKVWRVENGLLVSALYGDPWPVEEPIHAVCPRHDHEAPSPLCECGIHAGREL
Ga0075431_1012811242	3300006847	Populus Rhizosphere	MRIGRVESVWAEEALRPAVGWKVWRVEDGVLRSVLYGDFWPVDDPVEAVCRRQLRSRHAAPSRGCECGIHAGRDLAAW
Ga0075424_1010203201	3300006904	Populus Rhizosphere	MRIGRVESFWAEDALRPAVGWKVWRVENGLLRSVLYGDLWPVDEPVEAVCRRQLRSRHEAPSRGCECGIHAGRELGAWDHYLAVGSEARVFG
Ga0066710_1011868112	3300009012	Grasslands Soil	ARRGMKIGRIARAWGAEALQPAVGWKVWGVADGQLRSVLYGDLWPLDEPVRALCRRPLRTPHEAPAVACECGIHAGRELGAWDHYLAVEAGARQSA
Ga0111539_115894342	3300009094	Populus Rhizosphere	MRIGRVESVWAEEALRPAVGWKVWRVEDGVLRSVLYGDFWPVDDPVEAVCRRQLRSRHAAPSRGCECGIHAGRDLAAWDH
Ga0105245_100494171	3300009098	Miscanthus Rhizosphere	MRVGRVERAWGAEALRPAVGWKVWRVEDGLLKSVLYGDPWPVDGPIEAACARHGHEAPAVACECGIHAGRTLEAWEHYLRVGAEARVFGRVLLWGAT
Ga0105245_127465571	3300009098	Miscanthus Rhizosphere	MRVGRVERAWSAEALRPAVGWKVWRVEDGLLKSVLYGDPWPVDGPIEAACARHGHDAPAVACECGIHAGRTLEAWEHYLRVGAEARVFGRVLLWGAT
Ga0075423_102753021	3300009162	Populus Rhizosphere	VKIGRIEAAWAAEALRPAVGWKVWRVDEQARLRSVLYGDPWPLDAPVEATCKRLGHDAPHAGCECGIHAGRELAAWEHYLAIDAENRVFGRVLLWGSTLEGAHGWRAAQA
Ga0105242_110562131	3300009176	Miscanthus Rhizosphere	MRIGRLERAWAADALRPAVGWKVWRVEDSYLVSVLYGDPWPVGEPIRAHCFRHEHEAPSPSCECGIHAGRELEAWEHYLHVGADSRVFGRVLLWG
Ga0126321_11547332	3300010145	Soil	MRIGHIEHAWAAKDLRPAVGWKVWRVDEHTRLQSVLYGDPWPVDEPVHAVCKRLSHEAPFRGCECGIHAGRDLRAWDHYLHIDAEHRVFGRVLLWGSTLEGVH
Ga0126319_16528091	3300010147	Soil	MRIGRLERAWAADELRPAVGWKVWRVAESRLLSVLYGDPWPVDEPIDASCFRHEHEAPTPSCECGIHAGRELAAWEHYLHVGAESRVFG
Ga0127503_110682541	3300010154	Soil	MRIGRLERAWGANALRPAVGWKVWRVEDDRLVSVLYGDPWPVDEPINADCARHDHEAPSPWCECGIHAGRSLAAWEHYLHV
Ga0134084_102798662	3300010322	Grasslands Soil	MRIGRLERTWGAEALRPAVGWKVWRVDEEARLLSVLYGDLWPVDEPVRAPYRRVVHARHAGPAPATPPGRPMARLPRAAA
Ga0134063_101890651	3300010335	Grasslands Soil	MRTGRIERAWGAEALEPTVGWKVWRVDNGLLVSVLYGDPWPVDEPLQASCVRHDHDAPARACECGIHAGRDLVAWGHYLNVGAESRVFGRVLLWGATVE
Ga0126377_102737381	3300010362	Tropical Forest Soil	MRIGRLEHAWAAADLRPAVGWKVWRVENGLLRSVLYGDPWPVDAPVRAACRRHVHVPHEAPHAACECGIHAGRELAAWEHYLHVGAESRVFGRVLLWGATVEGASGWRAA
Ga0126377_103109121	3300010362	Tropical Forest Soil	MRIERIERAWGAEALRPAVGWKVWRVEDGALLSVLYGDVWPVDEPVRATCRRHVHVAHDAPAIGCECGIHAGRELGAWDHYLAVGAEERVFGRVLLWGAVLE
Ga0126377_132465091	3300010362	Tropical Forest Soil	MRIGRLERSWGAEALRPAVGWKVWRVENGLLASVLYGDPWPVDEPIRAECSRHDHEAPSPLCECGIHAGRDLAAWEHYLRV
Ga0134126_102345835	3300010396	Terrestrial Soil	MRVGRVEGAWGAEALRPAVGWKVWRVEDGLLKSVLYGDPWPVDGPIEAACARHGHEAPAVACECGIHAGRTLEAWEHYLRVGAEAR
Ga0134124_110794231	3300010397	Terrestrial Soil	MRTGRIEREWGAEALQPTVGWKVWRVENGLLVSVLYGDPWPVDEPLRATCVRHDHEAPARACECGIHAG
Ga0134123_115488441	3300010403	Terrestrial Soil	MRVGRVERAWSAEALRPAVGWKVWRVEDGLLKSVLYGDPWPADGPIEAACARHGHEAPAVACECGIHAGRTLEAWEHYLRVGAEA
Ga0105246_105646833	3300011119	Miscanthus Rhizosphere	MRIGRLERAWAADALRPAVGWKVWRVEDGRLVSVLYGDPWPVDEPLEASCFRHAHEAPWQSCECGIHAGRELAAWEHYLHVGAESRVFGRVLLWGATIEGTL
Ga0137365_101002495	3300012201	Vadose Zone Soil	VRIGQIESAWGAEALRPVVGWKVWRVDEEARLLSVLYGDLWPVDEPVRATCRRVVHSSHEAPARGCECGIHAGRELGAWDHYLAIDAESRVFGRVLLWG
Ga0137379_106744463	3300012209	Vadose Zone Soil	VRIGRIESAWGAEELRPAVGWKVWRVDDEARLLSVLYGDLWPVDEPVRATCRRVVHSSHEAPARGCECGIHAGRELGAWDHYLAIDAESRVFGRVLLWGSTLEGAHGWRAAEARPVEIFV
Ga0137372_101018601	3300012350	Vadose Zone Soil	MRIGRLEQAWGAEALRPAVGWKVWRVDEGLLRSVLYGDPWPVDEPIRAVCRRPSRSHHEAPARVCECGIHAGRELGAWDHYLAVGSETRVFGRALVWGSTVEGRHGWRAECA
Ga0137369_107859971	3300012355	Vadose Zone Soil	MRIGRLEQAWGAEALRPAVGWKVWRVEEGLLRSVLYGDPWPVDEPIRAVCRRPSRSPHEAPSRVCECGIHAGRELGAWDHYLAVG
Ga0157343_10245871	3300012488	Arabidopsis Rhizosphere	MRIGRLERAWGAEALRPAVGWKVWRVESGLLVSALYGNPWPVDEPIHAVCPRHDHEAPSPLCECGIHA
Ga0157351_10300712	3300012501	Unplanted Soil	MRIERIERAWGAEALRPAVGWKVWRVEDGALLSVLYGDVWPVDEPVRATCRRHVHVAHEAPAVGCECGIHAGRELRAWEH
Ga0157289_101111793	3300012903	Soil	MRIDRIERAWGAEALRPAVGWKVWRVEDGALLSVLYGDVWPVDEPVRATCRRHVHLAHEAPAIGCECGIHAGRELGAWDHYLAVGA
Ga0157283_100334843	3300012907	Soil	MRIGRVESFWAEDALRPAVGWKVWRVENGLLRSVLYGDLWPVDEPVEAVCRRQLRSRHEAPSRGCECGIHAGRELGAWDHYLAVG
Ga0157298_100061771	3300012913	Soil	MRIDRIERAWGAEALRPAVGWKVWRVEDGALLSVLYGDVWPVDEPVRATCRRHVHVAHEAPAIGCECGIHAGRELGAWDHYLAVGAEARVFGRVLLWGAVLEGATAWRGELARPVEIFV
Ga0157302_103202191	3300012915	Soil	MRIGRLEQAWAADALRPAVGWKVWRVEDGLLVSVLYGDRWPVDEPIRASCFRHEHEAPSPFCECGIHAGRE
Ga0162651_1000170341	3300012938	Soil	MRIERIERAWGAEALRPAVGWKVWRVEDGALLSVLYGDRWPVEEPVRATCRRHVHVAHDAPALGCECGIHAGRELRAWGHYLAVGAEARVFGRVLLWGAVLEGASAWRGELA
Ga0164299_104621161	3300012958	Soil	MRVGRLERAWAADALRPAVGWKVWRVADGQLVSVLYGNPWPVDEPIEADCFRHEHEAPSRFCECGIHAGRELAAWVHYLHVGVESRVFG
Ga0164309_105855143	3300012984	Soil	MRIGRLERAWAADALRPAVGWKVWRVADGQLVSVLYGNLWPVDEPIEASCFRHEHEAPARSCECGIHAGRELDAWEHYLHVGAESRVFGRVLLWGATVEG
Ga0164304_100721535	3300012986	Soil	MRVGRLERAWAAEALRPAVGWKVWRVESGLLVSVLYGDPWPVDEPLRAACIRHDHDAPVRACECGIHAGR
Ga0164306_106900023	3300012988	Soil	MRIGRLERAWAADALRPAVGWKVWRVADGQLVSVLYGNPWPVDEPIEASCFRHEHEAPARSCECGIHAGRELDAWEHY
Ga0164305_118635852	3300012989	Soil	MRTGRIEREWGAEALQPTVGWKVWRVESGLLVSVLYGAPWPVDEPLRAACIRHDHDAPARACECGIHAGRDLAAWGHYLNVGAESRVFGRVLLWGGTVEGAHGW
Ga0182008_107321251	3300014497	Rhizosphere	MRIGRIERAWGAESLRPAVGWKVWRVEDGLLKSVLYGDVWAPDVPIQAHCVRHEHAAPSPPCECGIHAGRELAAWQHYLAVGAESRVFGRVLLWGSTVEGAHGWRAAFARPVEIVVPA
Ga0134072_101765081	3300015357	Grasslands Soil	VRIGRIESAWGAEALRPAVGWKVWRVDEEARLLSVLYGDLWPVDEPVRATCRRVVHSSHEAPARGCECGIHAGRELGAWDHYLAIDAESRVF
Ga0132256_1024277572	3300015372	Arabidopsis Rhizosphere	MRIGRLERTWAAEALRPAVGWKVWRVAEGQLVSVLYGDPWPVDEPIVASCFRHEHEAPSPSCECGVHAGRELAAWEHYLHVGAESRVFGRVLLWGATV*
Ga0134074_11382562	3300017657	Grasslands Soil	VRIGRIESAWGAEALRPAVGWKVWRVDEEGRLLSVLYGDLWPVDEPVRATCRRVVHSSHEAPARGCECGIHAGRELGAWDHYLAIDAESRVFGRVLLWGSTLEGAHGWRAAEAR
Ga0184619_101733703	3300018061	Groundwater Sediment	MRIGRIESTWGAEALRPAVGWKVWRVDEVARLRSVLYGDLWPLDEPVRAHCKRLTHEAPYKGCECGIHAGREL
Ga0184619_102949991	3300018061	Groundwater Sediment	MRIGRLEQAWGAEALRPAVGWKVWRVEEGLLRSVLYGDPWPVDEPIRAVCRRPSRSPHEAPSRACECGIHAGRELGAWDHYLAV
Ga0206356_112220211	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MRIGRLEREWAADALRPAVGWKVWRVADGQLVSVLYGNPWPVDEPIEASCFRHDHEAPARSCECGIHAGRELAAWEHYLHVGVESRVFGRVLLW
Ga0193719_100566361	3300021344	Soil	MRIGRLERAWAADELRPAVGWKVWRVAESRLVSVLYGNPWPVDEPIVASCFRHEHEAPTPSCECGIHAGRE
Ga0247751_10234763	3300023069	Soil	MRIDRIERAWGAEALRPAVGWKVWRVEDGALLSVLYGDVWPVDEPVRATCRRHVHVAHEAPAIGCECGIHAGRELGAWDHYLAVGAEARVFGRVLLWGAVLEGATAWRGELARPVEIFVP
Ga0247693_10007486	3300024181	Soil	MRIGRLERAWGAEALRPAVGWKVWRVESGLLVSALYGNPWPVDEPIHAVCPRHDHEAPSPLCECGIHAGRELAAWEHYLRVGSESRVFGRV
Ga0247673_10035594	3300024224	Soil	MRIGRLERAWGAEALRPAVGWKVWRVESGLLVSALYGNPWPVDEPIHAVCPRHDHEAPSPLCECGIHAGRELAAWEHYLRVGSESRVF
Ga0247670_10628021	3300024283	Soil	MRIGRLERAWGAEALRPAVGWKVWRVESGLLVSALYGNPWPVEEPIHAVCPRHDHEAPSPLCECGIHAGRELAA
Ga0247667_10128494	3300024290	Soil	MRIGRLERAWGAEALRPAVGWKVWRVESGLLVSALYGNPWLVDEPIRAVCPRHDHEAPSPLCECGIHAGRELAAWEHYLRVGSESRVF
Ga0247681_10816692	3300024310	Soil	MRIGRLERAWGAEALRPAVGWKVWRVESGLLVSALYGNPWPVEEPIHAVCPRHDHEAPSPLCECGIHAGRELAAWEHYLRVGPESRV
Ga0207684_109401382	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MRIGRIEAAWAAEALRPVVGWKIWRVDEQMRLLSVLYGDPWPVDEPAHATCKRLAHEAPYPGCECGIHGG
Ga0207693_102284952	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MRIGRIEAAWAAEALRPAVGWKVWRVDEQMRLLSVLYGDPWPVDEPAHATCKRLAHEAPYPGCECGIHAGRDLAAWEHYLSIDPERRVFGRRALVQ
Ga0207649_110676521	3300025920	Corn Rhizosphere	MRIGRLERAWGAEALRPAVGWKVWRVESGLLVSALYGNPWPVDEPIHAVCPRHDHEAPSPLCECGIHAGRELAAWEHYLRVGSESRVFGRVLLW
Ga0207700_100268926	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MRIGRLERAWGAEALRPAVGWKVWRVESGLLVSALYGDPWPVEEPIHAVCPRHDHEAPSPLCECGIHAGRELAAWEHYLRV
Ga0207706_100493666	3300025933	Corn Rhizosphere	MRTGRIEREWGAEALQPTVGWKVWRVENGLLVSVLYGDPWPVDEPLRATCIRHDHEAPARACECGIHAGRELAAWGHYLAV
Ga0207661_102823481	3300025944	Corn Rhizosphere	MRIGRLERAWAADALRPAVGWKVWRVEDGRLVSVLYGDPWPVDEPLEASCFRHAHEAPWQSCECGIHAGRELAAWEHYLHVGAESRVFGRVLLWGAT
Ga0207651_113802692	3300025960	Switchgrass Rhizosphere	MRIGRLEREWAADALRPAVGWKVWRVADGQLVSVLYGNPWPVDEPIEASCFRHDHDAPARSCECGIHAGRELAAWEHYLHVGVESRVFGRVLLWGATVEGVHGWR
Ga0207677_110489342	3300026023	Miscanthus Rhizosphere	MRIGRLEREWAADALRPAVGWKVWRVADGQLVSVLYGNPWPVDEPIEASCFRHDHEAPARSCECGIHAGRELAAWEHYLHVGVESRVFGRVLLWGATV
Ga0207703_114511601	3300026035	Switchgrass Rhizosphere	MRIGRLEREWAADALRPAVGWKVWRVADGQLVSVLYGNPWPVDEPIEASCFRHDHDAPARSCECGIHAGRELAAWEHYLHVGVESRVFGRVLLWGATIE
Ga0207678_107875373	3300026067	Corn Rhizosphere	MRVGRVERAWAAEALRPAVGWKVWRVEDGVLKSVLYGDPWPVDAPIEAACVRHGHEAPAVACECGIHAGRTLEAWEHYLRVGAEGRVFGRVLLWGATVE
Ga0207708_108778851	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MRIDRIERAWGAEALRPAVGWKVWRVEDGALLSVLYGDVWPVDEPVRATCRRHVHVAHEAPAIGCECGIHAGRELGAWDHYLAVGAEA
Ga0209155_12866071	3300026316	Soil	VRIGRIESAWGAEALRPAVGWKVWRVDEEARLLSVLYGDLWPVDEPVRATCRRVVHSSHEAPARGCECGIHAGRELGAWDHYLAIDAERRVFGRVLLW
Ga0209474_100938004	3300026550	Soil	VRIGRIESAWGAEALRPAVGWKVWRVDEEARLLSVLYGDLWPVDEPVRATCRRVVHSSHEAPARGCECGIHAGRELGAWDHYLAIDAESRVFGRVLLWGSTLEGAHGWRAAEARPV
Ga0207584_10041732	3300026904	Soil	MRIDRIERAWGAEALRPAVGWKVWRVEDGALLSVLYGDVWPVDEPVRATCRRHVHVAHEAPAIGCECGIH
Ga0209382_115155942	3300027909	Populus Rhizosphere	MRIERIERAWGAEALRPAVGWKVWRVEDGALLSVLYGDVWPVDEPVRATCRRHVHVAHEAPAIGCECGIHAGRELGA
Ga0247685_10044194	3300028065	Soil	MRIGRLERAWGAEALRPAVGWKVWRVESGLLVSALYGNPWPVDEPIHAVCPRHDHEAPSPLCECGIHAGRELAAWEHYLRVGS
Ga0268266_122213251	3300028379	Switchgrass Rhizosphere	MRIGRLERAWGAEALRPAVGWKVWRVESGLLVSALYGDPWPVEEPIHAVCPRHDHEAPSPLCECGIHAGREL
Ga0307295_100590851	3300028708	Soil	MRIGRLERAWAADALRPAVGWKVWRVAERRLVSVLYGDPWPVDEPIRASCFRHEHEAPSPSCECGIHAGRELAAWEHYLHV
Ga0307288_100021179	3300028778	Soil	MRTGRIEREWGADALQPTVGWKVWRVEHGLLVSVLYGDPWPVDEPLRASCVRHEHDAPARACECGIHAGREL
Ga0307288_104693262	3300028778	Soil	MRIGRIESTWAAEALRPAVGWKVWRVDEVARLRSVLYGDLWPLDEPVRAHCKRLTHEAPYKGCECGIHAGRELNAWGHYLNVEREAR
Ga0307323_102249862	3300028787	Soil	MRTGRIEREWGAEALQPTVGWKVWRVEDGLLVSVLYGDPWPVDEPLRASCVRHEHDAPARACECGIHAG
Ga0307283_100473283	3300028790	Soil	MRIGRIERAWAADALRPAVGWKVWRVADGQLVSVLYGNPWPVDEPIEASCFRHEHEAPSRFCECGIHAGRELAAWEHYLHVGAEARVFGRVLLWGATVEG
Ga0307302_105556581	3300028814	Soil	MRIGRLERAWAADALRPAVGWKVWRVAERRLVSVLYGDPWPVDEPIRASCFRHEHEAPSPSCECGIHAGRELAAWEH
Ga0307296_107946382	3300028819	Soil	MRTGRIEREWGADALQPTVGWKVWRVEHGLLVSVLYGDPWPVDEPLRASCVRHEHDAPARACECGIHAGRELAAWGH
Ga0307278_101345833	3300028878	Soil	MRIGQVERAWGAEALQPAVGWKVWRVEHDAGQTRLRSVLYGDLWPVDEPVEAVCRRLLRVSHEPPSRGCECGIHAGRELGAW
Ga0308198_10629942	3300030904	Soil	MRIGRIESTWGAEALRPAVGWKVWRVDEVARLRSVLYGDLWPLDEPVQAHCKRLTHEAPYKGCECGIHAGRELNAWGH
Ga0170824_1287201581	3300031231	Forest Soil	MRIGRLERAWGAEALRPAVGWKVWRVENGLLASVLYGDPWPVDEPIRAVCSRHDHEAPSPLCECGIHAGREKI
Ga0308194_102262522	3300031421	Soil	MRIGRIESAWDAEALRPAVGWKVWRVDEQAQLLSVLYGDLWPVDEPIQAVCRRLSHEAPFEGCECGIHAGRELSAWGHYL
Ga0308194_102459902	3300031421	Soil	MKIGRLERAWGAEALQPVVAWKVWRVDEEARLRSVLYGDPWPVDEPVRAVCKRLLRSGHEAPARGCECGIHA
Ga0307408_1013041381	3300031548	Rhizosphere	MRIERIERAWGADALRPAVGWKVWRVQDGVLLSVLYGDPWPFDEPVRATCRRHVHVAHAAPSPACECGIHAGRELRAWDHYLAVGAEERVFGRVLL
Ga0310813_115908732	3300031716	Soil	VKIGRIEAAWAAEALRPAVGWKVWRVDELARLRSVLYGDPWPLDAPVEATCKRLGHDAPHAGCECGIHAGRELAAWEHYLAIDAENRVFGRVLLWGSTLEGAHG
Ga0307473_106990791	3300031820	Hardwood Forest Soil	VKIGRIEAAWAAEALRPAVGWKVWRVDEQARLRSVLYGDPWPLDAPVEAACKRLGHDAPYAGCECGIHAGRELAAWEHYLNVGSERRVFGRVLLWGSTLEGAHGWRAAQARPVE
Ga0307410_110413451	3300031852	Rhizosphere	MRIERIERAWGADALRPAVGWKVWRVQDGVLLSVLYGDPWPFDEPVRATCRRHVHVAHAAPSPACECGLHAGR
Ga0307411_104570213	3300032005	Rhizosphere	MRIERIERAWGADALRPAVGWKVWRVQDGVLLSVLYGDPWPFDEPVRATCRRHVHVAHAAPSPACECGIHAGRELRAWDHYLAVGAEERVFGRVLLWGAVLEGA
Ga0247830_106383163	3300033551	Soil	MRIERIERAWGAEALRPAVGWKVWRVEDGALLSVLYGDVWPVDEPVRATCRRHVHVAHEAPAIGCECGIHAGRELGAWDHYLAVGAEERV
Ga0370546_053351_2_262	3300034681	Soil	MRIGRIESTWGAEALRPAVGWKVWRVDEVARLRSVLYGDLWPLDEPVRAHCKRLTHEAPYKGCECGIHAGRELNAWGHYLNVEREAR
Ga0373959_0217905_1_306	3300034820	Rhizosphere Soil	MRIGRLERAWGAEALRPAVGWKVWRVESGLLVSALYGNPWPVEEPIHAVCPRHAHEAPSPLCECGIHAGRELAAWEHYLRVGPESRVFGRVLLWGSTVEGEH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070475

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences