Metagenome / Metatranscriptome Family F070375

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070375
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	60 residues
Representative Sequence	MTHVLLLNLVFFIPATCGASAFALFVYRFLRNAPPPASPPGGGSKIPLPAAGPDDLARSA
Number of Associated Samples	74
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	39.02 %
% of genes near scaffold ends (potentially truncated)	23.58 %
% of genes from short scaffolds (< 2000 bps)	78.05 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (86.179 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (21.951 % of family members)
Environment Ontology (ENVO)	Unclassified (35.772 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (75.610 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 40.91% β-sheet: 0.00% Coil/Unstructured: 59.09%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF11706	zf-CGNR	43.09
PF03641	Lysine_decarbox	23.58
PF07992	Pyr_redox_2	13.01
PF07719	TPR_2	3.25
PF03795	YCII	1.63
PF08281	Sigma70_r4_2	1.63
PF02274	ADI	1.63
PF13586	DDE_Tnp_1_2	0.81
PF07883	Cupin_2	0.81
PF09369	MZB	0.81
PF02627	CMD	0.81
PF13302	Acetyltransf_3	0.81
PF05103	DivIVA	0.81
PF00491	Arginase	0.81
PF04542	Sigma70_r2	0.81
PF01230	HIT	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG1611	Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) family	Nucleotide transport and metabolism [F]	23.58
COG1834	N-Dimethylarginine dimethylaminohydrolase	Amino acid transport and metabolism [E]	1.63
COG2235	Arginine deiminase	Amino acid transport and metabolism [E]	1.63
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.63
COG4874	Uncharacterized conserved protein	Function unknown [S]	1.63
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	0.81
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.81
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.81
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.81
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.81
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.81
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.18 %
Unclassified	root	N/A	13.82 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.18 %
Unclassified	root	N/A	13.82 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.18 %
Unclassified	root	N/A	13.82 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	71.54 %
Unclassified	root	N/A	13.82 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	70.73 %
Unclassified	root	N/A	13.82 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	47.97 %
Unclassified	root	N/A	13.82 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2.44 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	47.15 %
Unclassified	root	N/A	13.82 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.44 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	47.15 %
Unclassified	root	N/A	13.82 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.81 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	47.15 %
Unclassified	root	N/A	13.82 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.81 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	47.15 %
Unclassified	root	N/A	13.82 %
unclassified Solirubrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter	0.81 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	47.15 %
Unclassified	root	N/A	13.82 %
Solirubrobacter sp. URHD0082	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003152\|Ga0052254_1054916	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300003321\|soilH1_10129387	Not Available	2284	Open in IMG/M
3300004479\|Ga0062595_100169167	All Organisms → cellular organisms → Bacteria	1303	Open in IMG/M
3300005163\|Ga0066823_10050660	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300005171\|Ga0066677_10564622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	650	Open in IMG/M
3300005177\|Ga0066690_10603739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	733	Open in IMG/M
3300005177\|Ga0066690_10811773	Not Available	607	Open in IMG/M
3300005178\|Ga0066688_10261359	All Organisms → cellular organisms → Bacteria	1110	Open in IMG/M
3300005179\|Ga0066684_10926156	Not Available	567	Open in IMG/M
3300005184\|Ga0066671_10283601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1033	Open in IMG/M
3300005332\|Ga0066388_100295667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2264	Open in IMG/M
3300005332\|Ga0066388_100367760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2084	Open in IMG/M
3300005332\|Ga0066388_100399447	All Organisms → cellular organisms → Bacteria	2020	Open in IMG/M
3300005332\|Ga0066388_101043101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1376	Open in IMG/M
3300005332\|Ga0066388_101745465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1104	Open in IMG/M
3300005332\|Ga0066388_103392761	Not Available	814	Open in IMG/M
3300005332\|Ga0066388_106239221	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300005454\|Ga0066687_10084858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1565	Open in IMG/M
3300005467\|Ga0070706_100336286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1408	Open in IMG/M
3300005524\|Ga0070737_10129378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1115	Open in IMG/M
3300005529\|Ga0070741_10006078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	26212	Open in IMG/M
3300005529\|Ga0070741_11225459	Not Available	632	Open in IMG/M
3300005529\|Ga0070741_11419092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	576	Open in IMG/M
3300005529\|Ga0070741_11633013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	527	Open in IMG/M
3300005532\|Ga0070739_10068851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2152	Open in IMG/M
3300005532\|Ga0070739_10113725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1501	Open in IMG/M
3300005538\|Ga0070731_10126887	All Organisms → cellular organisms → Bacteria	1691	Open in IMG/M
3300005540\|Ga0066697_10364692	Not Available	840	Open in IMG/M
3300005555\|Ga0066692_10991951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	514	Open in IMG/M
3300005556\|Ga0066707_10828168	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300005559\|Ga0066700_10978764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	558	Open in IMG/M
3300005561\|Ga0066699_10800303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	664	Open in IMG/M
3300005576\|Ga0066708_10185384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1298	Open in IMG/M
3300005764\|Ga0066903_100006712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	10289	Open in IMG/M
3300005764\|Ga0066903_100082030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	4219	Open in IMG/M
3300005764\|Ga0066903_100258772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2697	Open in IMG/M
3300005764\|Ga0066903_100263007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2680	Open in IMG/M
3300005764\|Ga0066903_100323960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2463	Open in IMG/M
3300005764\|Ga0066903_100428669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2195	Open in IMG/M
3300005764\|Ga0066903_100476872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2101	Open in IMG/M
3300005764\|Ga0066903_100541708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1991	Open in IMG/M
3300005764\|Ga0066903_100765517	All Organisms → cellular organisms → Bacteria	1718	Open in IMG/M
3300005764\|Ga0066903_100826182	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1662	Open in IMG/M
3300005764\|Ga0066903_101532190	Not Available	1260	Open in IMG/M
3300005764\|Ga0066903_101966981	All Organisms → cellular organisms → Bacteria	1122	Open in IMG/M
3300005764\|Ga0066903_102118649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1083	Open in IMG/M
3300005764\|Ga0066903_103117102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	897	Open in IMG/M
3300005764\|Ga0066903_103689629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	824	Open in IMG/M
3300005764\|Ga0066903_104149476	Not Available	776	Open in IMG/M
3300005764\|Ga0066903_104472052	Not Available	746	Open in IMG/M
3300005764\|Ga0066903_106465878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	611	Open in IMG/M
3300005764\|Ga0066903_107478425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	564	Open in IMG/M
3300005764\|Ga0066903_108021966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	541	Open in IMG/M
3300005891\|Ga0075283_1018874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1074	Open in IMG/M
3300005898\|Ga0075276_10079293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	709	Open in IMG/M
3300005902\|Ga0075273_10024213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1024	Open in IMG/M
3300005905\|Ga0075269_10006654	All Organisms → cellular organisms → Bacteria	1721	Open in IMG/M
3300006175\|Ga0070712_101389198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	613	Open in IMG/M
3300006796\|Ga0066665_10557193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	931	Open in IMG/M
3300006800\|Ga0066660_10289915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1301	Open in IMG/M
3300006804\|Ga0079221_10815006	Not Available	671	Open in IMG/M
3300009012\|Ga0066710_103407288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	604	Open in IMG/M
3300010043\|Ga0126380_10289388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1159	Open in IMG/M
3300010048\|Ga0126373_10915215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	941	Open in IMG/M
3300010048\|Ga0126373_11214073	Not Available	820	Open in IMG/M
3300010152\|Ga0126318_10310613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	661	Open in IMG/M
3300010303\|Ga0134082_10463123	Not Available	549	Open in IMG/M
3300010326\|Ga0134065_10052626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1258	Open in IMG/M
3300010360\|Ga0126372_10619466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1042	Open in IMG/M
3300010360\|Ga0126372_12212529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	599	Open in IMG/M
3300010360\|Ga0126372_12232971	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	597	Open in IMG/M
3300010366\|Ga0126379_13185542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	549	Open in IMG/M
3300010366\|Ga0126379_13414284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	532	Open in IMG/M
3300010366\|Ga0126379_13641477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	516	Open in IMG/M
3300010373\|Ga0134128_10002600	All Organisms → cellular organisms → Bacteria	22263	Open in IMG/M
3300010376\|Ga0126381_100349051	All Organisms → cellular organisms → Bacteria	2045	Open in IMG/M
3300010376\|Ga0126381_100718352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1430	Open in IMG/M
3300010376\|Ga0126381_101028750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1189	Open in IMG/M
3300010376\|Ga0126381_101663199	Not Available	922	Open in IMG/M
3300010376\|Ga0126381_102124366	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300010396\|Ga0134126_11035939	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300012206\|Ga0137380_10096231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2705	Open in IMG/M
3300012211\|Ga0137377_10747399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	912	Open in IMG/M
3300012356\|Ga0137371_10048036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3299	Open in IMG/M
3300012357\|Ga0137384_11317396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	569	Open in IMG/M
3300012359\|Ga0137385_10224941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1632	Open in IMG/M
3300012971\|Ga0126369_10063372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3211	Open in IMG/M
3300014497\|Ga0182008_10068894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1741	Open in IMG/M
3300015371\|Ga0132258_10352044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3642	Open in IMG/M
3300015371\|Ga0132258_10514761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2995	Open in IMG/M
3300015374\|Ga0132255_106140984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	508	Open in IMG/M
3300017947\|Ga0187785_10005334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4249	Open in IMG/M
3300017947\|Ga0187785_10592593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	567	Open in IMG/M
3300017974\|Ga0187777_10543719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	815	Open in IMG/M
3300018058\|Ga0187766_10468399	Not Available	844	Open in IMG/M
3300018431\|Ga0066655_10565535	Not Available	762	Open in IMG/M
3300018433\|Ga0066667_11833548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	550	Open in IMG/M
3300018468\|Ga0066662_10552021	Not Available	1065	Open in IMG/M
3300018468\|Ga0066662_10947075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	849	Open in IMG/M
3300021560\|Ga0126371_10672081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1184	Open in IMG/M
3300021560\|Ga0126371_13322291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	544	Open in IMG/M
3300025994\|Ga0208142_1012470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	867	Open in IMG/M
3300026330\|Ga0209473_1077333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1409	Open in IMG/M
3300026530\|Ga0209807_1008544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5054	Open in IMG/M
3300026550\|Ga0209474_10048991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3033	Open in IMG/M
3300026550\|Ga0209474_10230546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1159	Open in IMG/M
3300027706\|Ga0209581_1021078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3339	Open in IMG/M
3300027773\|Ga0209810_1080913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1531	Open in IMG/M
3300027857\|Ga0209166_10102596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1595	Open in IMG/M
3300027968\|Ga0209061_1006539	All Organisms → cellular organisms → Bacteria	9398	Open in IMG/M
3300031938\|Ga0308175_100000027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	125001	Open in IMG/M
3300031938\|Ga0308175_100075863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3013	Open in IMG/M
3300031938\|Ga0308175_100198424	All Organisms → cellular organisms → Bacteria	1974	Open in IMG/M
3300031938\|Ga0308175_102537719	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300031939\|Ga0308174_10298334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1269	Open in IMG/M
3300031939\|Ga0308174_11976818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	502	Open in IMG/M
3300031996\|Ga0308176_10942770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	908	Open in IMG/M
3300032074\|Ga0308173_10252265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1495	Open in IMG/M
3300032770\|Ga0335085_11579166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	680	Open in IMG/M
3300032770\|Ga0335085_11601264	All Organisms → cellular organisms → Bacteria → Terrabacteria group	675	Open in IMG/M
3300032892\|Ga0335081_11479498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	753	Open in IMG/M
3300032955\|Ga0335076_10247958	Not Available	1675	Open in IMG/M
3300033803\|Ga0314862_0102322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	665	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.75%
Host-Associated	Host-Associated	3.25%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.12%
Plants	Host-Associated → Plants	3.25%
Aquatic	Environmental → Aquatic	1.63%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.12%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.44%
Freshwater	Environmental → Aquatic → Freshwater	1.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.35%
Loam	Environmental → Terrestrial → Soil → Loam	24.39%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.44%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.81%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	21.95%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	18.70%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.38%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.50%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.44%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.63%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.81%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.81%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	21.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.82%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	9.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.50%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.06%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.06%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	4.06%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.25%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.25%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.44%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.63%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Sediment	0.81%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.81%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.81%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.81%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003152	Freshwater sediment microbial communities from Loktak Lake, India	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005524	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005891	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_304	Environmental	Open in IMG/M
3300005898	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_405	Environmental	Open in IMG/M
3300005902	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_102	Environmental	Open in IMG/M
3300005905	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_105	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025994	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_304 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027706	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300027773	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027968	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033803	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_0_10	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0052254_10549162	3300003152	Sediment	MTHVLLLNLVFFVPGTCGAAASAFIIHRLLSTGAPPASPPPAGGSKSPLPAAGPDDLARSA*
soilH1_101293871	3300003321	Sugarcane Root And Bulk Soil	AYGSDVTHVLLLNLVFFIPATCGATAFALFVYRFLKSAPPPASPPGGGTKAPLPAAGPDDLAHSA
Ga0062595_1001691673	3300004479	Soil	MTHVVLLNLVFFIPATCGATAFAVFVYRLLKSAAPPAAPPRGGRKPPLPGAGPDDLARSA
Ga0066823_100506601	3300005163	Soil	MTHVLLLNLVFFIPATCGASAFALLVLRFLRQAPPPASPPGGGSKTRLPAAGPDDLARSA
Ga0066677_105646222	3300005171	Soil	MTHVLLLNLVFFVPAACGATAFALFIYRFLRSAPPPASSPPGGGGRVPLPVAGPDDLARSA*
Ga0066690_106037392	3300005177	Soil	NLVFFIPATCGATAFAVFVYRFLRSGEPPLPPPGGGSKAPLPVAGPDDLARSA*
Ga0066690_108117731	3300005177	Soil	MTHVLVLNLVFFIPAASGASAFVYCVLRCLRTAPPPASPPSGGSKAPVPSAG
Ga0066688_102613592	3300005178	Soil	MTHVVLLNLVFFIPATCGATAFAVFVYRFLRSGEPPLPPPGGGSKAPLPVAGPDDLARSA
Ga0066684_109261562	3300005179	Soil	MTHVLLLNLVFFIPATCGASAFAFFVYRFLRSSPPPARPPDGGSKVPLPAAGPD
Ga0066671_102836011	3300005184	Soil	LNLVFFVPAACGATAFALFIYRFLRSAPPPASSPPGGGGRVPLPVAGPDDLARSA*
Ga0066388_1002956673	3300005332	Tropical Forest Soil	MTHVLFLNLVFFIPATCGATAFAFFIYRFLNSAPPSAPAPPGGGSKVPLPVAGPEDLARSA*
Ga0066388_1003677604	3300005332	Tropical Forest Soil	MTHVVLLNLVFFIPATCGATAFALYIHRFLRSAPPPAQPPEGGSKAPLPAAGPDDLARSA
Ga0066388_1003994471	3300005332	Tropical Forest Soil	MTHIVLINLVFFFPATCGASAFALFVYRFLRGASPPEALPPPGGSKVPRPSAGPDDLARSA*
Ga0066388_1010431013	3300005332	Tropical Forest Soil	MTHVLFLNLVFFIPATCGASAFALLVYRFLRSPAPPASPPGGGSKTPLPAAGPDDLARSA
Ga0066388_1017454652	3300005332	Tropical Forest Soil	MTHVMLLNLVFFIPATCGASAFTFFVLRFLRTAPPPKSPPGGGSKAPLPSAGPDDLARSA
Ga0066388_1033927612	3300005332	Tropical Forest Soil	MTHVLFLNLVFFIPATCGATAFALFVYRFLKSSPPPAGSPPGGSKAPLPIAGPEDLARSA
Ga0066388_1062392211	3300005332	Tropical Forest Soil	MTHVVLLNLVFFIPATCGATAFSLFVYRFLRSAAPPEPAPPDGGSKTPLPAAGPHDLARSA*
Ga0066687_100848583	3300005454	Soil	VTHVLLLNLVFFVPATCGATAFTLFIVRFLRTPSPASFPPEGGSKVPPPGSGPDDLARSA
Ga0070706_1003362864	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTHVLLLNLVFFVPATCGASAFAFFIYRFLTSAPPPDSGPEGGSKVPHGVGPDDLARSA*
Ga0070737_101293782	3300005524	Surface Soil	MAHVVVLNIVFFLLPTCGATAFAFFVYRFLRSSAPPEPGPPEGGSKTPLPLAGPDDLARSA*
Ga0070741_1000607826	3300005529	Surface Soil	MLVHVLLLNLVFFIPATCGATALVLVWRRILRTAPPSPPAGPGGGSNVRLPSAGPNDLARSA*
Ga0070741_112254592	3300005529	Surface Soil	MTHVLILNLVFFIPATCGATAFAAFIYRFLKTAPPPAASPPGGGSKAPL
Ga0070741_114190922	3300005529	Surface Soil	MHLVLLNLVFFLIPTCGASAFALIVWRILRQGAPPAPGDAGGGSQVSLPSAGPDDLARSA
Ga0070741_116330132	3300005529	Surface Soil	MAHVLLLNLVFFIPATCGATAFAFFVYRFLRSAPPPSSPPGGGNRTRSPAAGPDDLARS
Ga0070739_100688513	3300005532	Surface Soil	MAHLVLLNLIFFLLPTCGAAAFAFLVWRFLRSSTPPEPGPPEGGSKTRLPVAGPDDLARSA*
Ga0070739_101137254	3300005532	Surface Soil	MTHVLFLNLVFFVPATCGASAFAFIVYRILRSASPPEPAPPEGGSKTPLPAAGPDDLARSA*
Ga0070731_101268872	3300005538	Surface Soil	MTHVVLLNLVFFIPATCGASAFALFVYRFLRTSPPESRPPDGGSKKPLPAAGPDDLARSA
Ga0066697_103646922	3300005540	Soil	MTHVLLLNLVFFVPATCGATAFALFIYRFLRSAPPPASSPPGGGGRVPLPVAGPDDLARSA*
Ga0066692_109919512	3300005555	Soil	DMTHVLLLNLVFFIPATCGASAFALFVYRFLRNAPPPASPPGGGNKIPLPAAGPDDLARSA*
Ga0066707_108281681	3300005556	Soil	DMTHVLLLNLVFFIPATCGASAFALFVYRFLRNAPPPASPPGGGSKIPLPAAGPDDLARSA*
Ga0066700_109787642	3300005559	Soil	MTHVLLLYLVFFVPAACGATAFALFIYRFLRSAPPPASSPPGGGGRVPLPVAGPDDLARSA*
Ga0066699_108003032	3300005561	Soil	MTHVVLLNLVFFIPATCGATAFAVFVYRFLRTGEPPAPPPGGGSKAPLPAAGPDDLARSV
Ga0066708_101853844	3300005576	Soil	SGGSKGYRRHMTHVLLLNLVFFVPAACGATAFALFIYRFLRSAPPPASSPPGGGGRVPLPVAGPDDLARSA*
Ga0066903_10000671211	3300005764	Tropical Forest Soil	MTHVVLLNLVFFTPATCGATAFALYIHRFLRSAPPPAQPPEGGSKAPLPAAGPDDLARSA
Ga0066903_1000820306	3300005764	Tropical Forest Soil	VTHVVLLNLVFFIPATCGASTFAFFVYRFLQSAPPPASPPGGGSKAPLPVAGPNDLARSA
Ga0066903_1002587722	3300005764	Tropical Forest Soil	MTHVVLLNLVFFVPATCGATAFALYIHRFLSSAPPPAHPPEGGSKVPLPAAGPEDLARSA
Ga0066903_1002630072	3300005764	Tropical Forest Soil	MTHVLFLNLVFFVPATCGATAFAVFIYRFLKTSPPPTSSPPGGGSRAPLPVAGPEDLARSA*
Ga0066903_1003239602	3300005764	Tropical Forest Soil	MTHVVLLNLVFFIPATCGATAFSLFVYRFLRFAAPPEQAPPDGGSKTPLPAAGPEDLARSA*
Ga0066903_1004286692	3300005764	Tropical Forest Soil	MTHVLVLNLVFFIPATCGASAFVFFVLRFLRSAPPPISPPRGGSKAPAPSAGPDDLARSA
Ga0066903_1004768722	3300005764	Tropical Forest Soil	MTHVVLLNLVFFAPSACGASAFVYVVYKCLRSGPPPSAPPDGGSKVPLPAAGPNDLARSA
Ga0066903_1005417082	3300005764	Tropical Forest Soil	MTHVLVLNLVFFFPATCGASAFVFLVLRFLRTTPPPLSPPDGGSKTPVPSAGPDDLAHSA
Ga0066903_1007655173	3300005764	Tropical Forest Soil	MTQVVLLNLVFFVPATCGATAFALFIYRFLRMASPPDPGPPGGGSGQPLPVAGPEDLARSA*
Ga0066903_1008261823	3300005764	Tropical Forest Soil	MTHVLILNLVFFIPATCGASAFAFFVLRFLRTAPPPMSPPRGGGKAPSPSAGPDDLARSA
Ga0066903_1015321901	3300005764	Tropical Forest Soil	MTHVLLLNLVFFFPATCGAAAFSFVVYRILRTAPPTGASPEGGSKSPLPAAGPNDLARSA
Ga0066903_1019669812	3300005764	Tropical Forest Soil	MTHVLLLNLVFFFPATSGAAAFAFVVYRILRTSPPPAAPPEGGSKSPLPAAGPNDLARSA
Ga0066903_1021186492	3300005764	Tropical Forest Soil	MTHVLLLNLVFFVPATCGASAFAFFIYRFLTSAPPPDSEPEGGSKGPRRVGPDDLARSA*
Ga0066903_1031171022	3300005764	Tropical Forest Soil	MTHVLILNLVFFIPATCGASAFAFFVLRFLRIAPPPKSPPGGGSKAPLPSAGPDDLARSA
Ga0066903_1036896292	3300005764	Tropical Forest Soil	VLLNLVFFIPATCGASAFSLFVYRFLRTTAPPSPSPPEGGSKLPLPGAGPEDLARSA*
Ga0066903_1041494762	3300005764	Tropical Forest Soil	MTNVLLLNLVFFVPATCGATAFALYIHRFLRSAPPPAQPPEGGSKVPLPAAGPDDLARSA
Ga0066903_1044720521	3300005764	Tropical Forest Soil	MTHVMLFNLVFFIPAACGASAFALFVYRFLKSGSPPSGPPGGGAKLPRPTAGPDDLARSA
Ga0066903_1064658782	3300005764	Tropical Forest Soil	LNLVFFIPATCGSTAFGLFIYRFLRSSPPSASSPPGGGSKAPLPAAGPDDLARSA*
Ga0066903_1074784252	3300005764	Tropical Forest Soil	MTHLLVLNLVFFFPATCGASAFAFFMYRFLRSAPPPDHPPEGGSKVQRPVAGPDDLARSA
Ga0066903_1080219662	3300005764	Tropical Forest Soil	MTHVVLLNLVFFFPATCGATAFALFILRFLKSGPPPAASPPDGGTKTPLPAAGPEDLASSA*
Ga0075283_10188742	3300005891	Rice Paddy Soil	MTHVMLLNLVFFIPATCGASAFAFFVYRFLKSAPPPASPPGGGSKVPLPAAGPDDLASSA
Ga0075276_100792932	3300005898	Rice Paddy Soil	MTHVVLLNLFFFVPATCGATASALFIYRFLKSAPPPASPPGGGSKAPLPSAGPDDLARSA
Ga0075273_100242132	3300005902	Rice Paddy Soil	MTHVLLLNLVFFFPATCGATAFAFFVYRFLRTAPPPASSPPGGGSKAPLPAAGPDDLARSA*
Ga0075269_100066543	3300005905	Rice Paddy Soil	MTHVMLLNLVFFIPATCGASAFAFLVYRFLKSAPPPASPPGGGSKVPLPAAGPDDLASSA
Ga0070712_1013891982	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTHVLLLNLVFFIPATCGASAFVLFVLRFLRQAPPPASPPGGGSKTRLPAAGPDDLARSA
Ga0066665_105571931	3300006796	Soil	RRRRPRRWSLRLRQHGIRGEMTHVVLLNLVFFIPATCGASAFAFFVYRFLRTVPPPASPPEGGTKVPLPAAGPDDLARSA*
Ga0066660_102899152	3300006800	Soil	MTHVLLLNLVFFVPAACGATAFALFIYRFLRTAPPPASSPPGGGGRVPLPVAGPDDLARSA*
Ga0079221_108150062	3300006804	Agricultural Soil	MTHVVLLNLVFFIPATCGATAFAIFVYRLLKSASPPPPPLGGGSKVPVPAAGP
Ga0066710_1034072881	3300009012	Grasslands Soil	RSRQYGIRGDMTHVLLLNLVFFIPATCGASAFAFFVYRFLRSSPPPARPPDGGSKVPLPAAGPDDLARSA
Ga0126380_102893882	3300010043	Tropical Forest Soil	MTHVVLLNLVFFTPATCGASAFSLFVYRFLRTTAPPGPSAPEGGSKLPLPTAGPEDLARSA*
Ga0126373_109152152	3300010048	Tropical Forest Soil	MTHIVLINIVFFIPATCGASAFALFVYRFLRSASPPDAHPPHGGSRLPLPIAGPDDLAHSA*
Ga0126373_112140732	3300010048	Tropical Forest Soil	MTHVVLLNLVFFTPATCGASAFAFFVYRFLRGTSAPDAPPPQGGSKVPLPSAGPEDLARSA*
Ga0126318_103106131	3300010152	Soil	ATCGATAFAFFIYRFLKSAPPPAASPPAGGSKAPLPTAGPDDLAHSA*
Ga0134082_104631231	3300010303	Grasslands Soil	MTHVLLLNLVFFIPATCGASAFAFYVYRFLRSSPPPARPPDGGSKVPLPAA
Ga0134065_100526264	3300010326	Grasslands Soil	ALPAGSRATCGASAFAFFVYRFLRTVPPPASPPEGGTKVPLPAAGPDDLARSA*
Ga0126372_106194662	3300010360	Tropical Forest Soil	MTHVVLLNLVFFIPATCGATAFALYIHRFLRSAPPPAQPPEGGSKAPLPAAGPDDLVRSA
Ga0126372_122125292	3300010360	Tropical Forest Soil	VTNIVLLNLVFFIPATCGASTFAFFICRFLRNSLPPDASPPGGGSKLPLPAAGPDDLARSA*
Ga0126372_122329712	3300010360	Tropical Forest Soil	MTHVVLLNLVFFIPATCGATAFSLFVYRFLRSAAPPEPAPPDGGSKTPLPAAGPEDLARSA*
Ga0126379_131855422	3300010366	Tropical Forest Soil	VTNIVLLNLVFFIPATCGASTFAFFICRFLRNSLPPDSSPPGGGSKLPLPAAGPDDLARSA*
Ga0126379_134142842	3300010366	Tropical Forest Soil	MTNVLLLNLVFFVPATCGATAFALYIHRFLRSAPPPAQPPEGGSKAPLPVAGPDDLARSA
Ga0126379_136414771	3300010366	Tropical Forest Soil	MTHVLILNLVFFIPATCGASAFAFFVLRFLRIAPRPKSPPGGGSKAPLPSAGPDDLARSA
Ga0134128_1000260021	3300010373	Terrestrial Soil	MTHVLLLNLVFFVPSVCGAAAFALVVHRLLQSAAPPAPSPPGGGSKAPLPAAGPDDLARSA*
Ga0126381_1003490513	3300010376	Tropical Forest Soil	MTHVVLLNLVFFIPATCGASAFSFFIYRFLRSSGPPGPTPPDGGSKVPLPSAGPEDLARSA*
Ga0126381_1007183523	3300010376	Tropical Forest Soil	VTHVVLLNLVFFIPATCGASAFSFFVYRFLRSAGPPDPSPPEGGSKTPLPAAGPEDLARSA*
Ga0126381_1010287502	3300010376	Tropical Forest Soil	MTPIVLINIVFFIPATCGATAFALFIYRFLRSASPPEGRPPHGGSKLPLPTAGPEDLARSA*
Ga0126381_1016631992	3300010376	Tropical Forest Soil	VTNVVLLNVVFFVPATCGATAFAVFIYRFLKTSPPPTSSPPGGGSRAPLPVAGPEDLARSA*
Ga0126381_1021243662	3300010376	Tropical Forest Soil	MTHIVLINIVFFIPATCGASAFALFVYRFLRSASPPDAHPPHGGSRLPLPGAGPDDLARSA*
Ga0134126_110359392	3300010396	Terrestrial Soil	MTHVLLLNLVFFIPATSGATTFAYFVYRFLKSASPPASPPGGGGKAPLPAAGPDDLSRSA
Ga0137380_100962312	3300012206	Vadose Zone Soil	MTHVVLLNLVFFIPATCGATAFALFVYRFLRSAPPPSSLPPEGGSKAPLPTAGPDDLARSA*
Ga0137377_107473991	3300012211	Vadose Zone Soil	GATAFALFIYRFLRSAPPPASSPPGGGGRVPLPVAGPDDLARSA*
Ga0137371_100480366	3300012356	Vadose Zone Soil	MTHVVLLNLVFFIPATCGATAFGLFVYRFLRSAPPPSSLPPEGGSKAPLPTAGPDDLARSA*
Ga0137384_113173961	3300012357	Vadose Zone Soil	MTHVLLLNLVFFIPATCGASTFAFFVYRFLRSAPPPAHPPEGGNKVPAPAAGPDDLARSA
Ga0137385_102249413	3300012359	Vadose Zone Soil	MTHVLLLNLVFFIPATCGATAFGLFVYRFLRSAPPPSSLPPEGGSKAPLPTAGPDDLARSA*
Ga0126369_100633724	3300012971	Tropical Forest Soil	MTHVVLLNLVFFIPATCGATAFALYIHRFLRSAPPPAQPPEGGSKAPLPVAGPDDLARSA
Ga0182008_100688944	3300014497	Rhizosphere	MTHVLLLNLVFFFPATCGATAFAFFVYRFLRSAPPPESPPGGGSKTPLPAAGPHDLARSA
Ga0132258_103520442	3300015371	Arabidopsis Rhizosphere	MTHVVLLNLVFFIPATCGASAFALFIYRVLRSAAPPGSAPPDGGSKTPLPSAGLEDLARSA*
Ga0132258_105147614	3300015371	Arabidopsis Rhizosphere	MTHVLLLNLVFFIPATCGASAFAFLVLRFLRSAPPPVSPPRGGSKAPAPSAGPDDLARSA
Ga0132255_1061409841	3300015374	Arabidopsis Rhizosphere	MTHVLLLNLVFFIPATCGASAFAFLVLRFLRSAPPPVSPPRGGSKAPAPSAGPDDL
Ga0187785_100053345	3300017947	Tropical Peatland	MTHVLFLNLVFFIPATCGATAFAVFIYRFLKSSPPPASPPAGGSKMPLPVAGPEDLARSA
Ga0187785_105925932	3300017947	Tropical Peatland	MTHVLLLNLVFFFPATCGAAAFAFVVYRILRTAPPTGTSPEGGTKTPLPAAGPNDLARSA
Ga0187777_105437192	3300017974	Tropical Peatland	MTHVVLLNLVFFVPATCGATAFALYIHRFLRSAPPGSPPPQGGSKAPLPAAGPDDLARSA
Ga0187766_104683991	3300018058	Tropical Peatland	MTHVLLLNLVFFVPATCGATAFALYIHRFLRSAPPGSPPPQGGSKAPLPAAGPDDLARSA
Ga0066655_105655352	3300018431	Grasslands Soil	MTHVVLLNLVFFVPATCGATASFLLLYRALTSGAPPQPPDGHGGRKVPVLPGAGPDDLARSA
Ga0066667_118335481	3300018433	Grasslands Soil	MTHVLLLNLVFFIPATCGASAFAFFVYRFLRTGEPPAPPPGGGSKAPLPAAGPDDLARSV
Ga0066662_105520212	3300018468	Grasslands Soil	MTHVLLLNLVFFIPATCGASAFALFVYRFLRNAPPPASPPGGGSKIPLPAAGPDDLARSA
Ga0066662_109470752	3300018468	Grasslands Soil	DARRSRRVCARRRTGYSWDMTHVVLLNLVFFIPATCGATAFGLFVYRFLGSNPPSLPTAGPDDLARSA
Ga0126371_106720812	3300021560	Tropical Forest Soil	MTPIVLINIVFFIPATCGATAFALFIYRFLRSASPPEGRPPHGGSKLPLPTAGPEDLARS
Ga0126371_133222912	3300021560	Tropical Forest Soil	MTHVLFLNLVFFVPATCGATAFAVFIYRFLKTSPPPTSSPPGGGSRAPLPVAGPEDLARS
Ga0208142_10124701	3300025994	Rice Paddy Soil	HATGADTGRGRRVCALGSTAYSCEMTHVMLLNLVFFIPATCGASAFAFFVYRFLKSAPPPASPPGGGSKVPLPAAGPDDLASSA
Ga0209473_10773334	3300026330	Soil	THVLLLNLVFFVPAACGATAFALFIYRFLRSAPPPASSPPGGGGRVPLPVAGPDDLARSA
Ga0209807_10085442	3300026530	Soil	MTHVLLLNLVFFVPAACGATAFALFIYRFLRSAPPPASSPPGGGGRVPLPVAGPDDLARS
Ga0209474_100489911	3300026550	Soil	MTHVLLLNLVFFVPATCGATAFALFIYRFLRSAPPPASSPPGGGGRVPLPVAGPDDLARS
Ga0209474_102305463	3300026550	Soil	MTHVLLLNLVFFIPATCGASAFAFFVYRFLRSSPPPARPPDGGSKVPLPAAGPDDLARSA
Ga0209581_10210785	3300027706	Surface Soil	MAHVVVLNIVFFLLPTCGATAFAFFVYRFLRSSAPPEPGPPEGGSKTPLPLAGPDDLARS
Ga0209810_10809133	3300027773	Surface Soil	MAHLVLLNLIFFLLPTCGAAAFAFLVWRFLRSSTPPEPGPPEGGSKTRLPVAGPDDLARS
Ga0209166_101025962	3300027857	Surface Soil	MTHVLLLNLVFFIPATCGATAFAVIVYRLLRVAPPPASPPDGGTKTPSPLAGPDDLARSA
Ga0209061_100653911	3300027968	Surface Soil	RSPRSVILRDMAHVVVLNIVFFLLPTCGATAFAFFVYRFLRSSAPPEPGPPEGGSKTPLPLAGPDDLARSA
Ga0308175_10000002757	3300031938	Soil	MTHVLLLNLVFFVPATCGATAFAFIVHRVLRSTPPPAASPPGGGSKIPLPAAGPDDLARS
Ga0308175_1000758634	3300031938	Soil	MTHVLLLNLVFFTPATCGAAAFVLCIHRCLGSNPPPASSSPEGGSKAPLPAAGPDDLAHS
Ga0308175_1001984243	3300031938	Soil	MTHVLLLNLVFFIPATCGATAFVLCIHRCLKSNPPPASLQPGGGSNAPLPAAGPDDLARS
Ga0308175_1025377192	3300031938	Soil	MTHVLLLNVVFFIPATCGAAALVLCIHRCLKSNPPPASSPPGGGSKAPLPAAGPDDLARS
Ga0308174_102983341	3300031939	Soil	CSRGSSANRCDVMHVLLLNLVFFIPAGCGASAFTFFVHRFLRSAPPPASPPEGGRKAPRPVAGPDDLARSA
Ga0308174_119768182	3300031939	Soil	MTHLVLLNLVFFIPATCGASAFAFYIHRFLNSAAPPGAPPPGGGSKAPLPAAGPDDLARS
Ga0308176_109427703	3300031996	Soil	MTHVLLLNLVFFVPATCGATAFVLCIHRCLKSNPPPASLQPGGGSNAPLPAAGPDDLARS
Ga0308173_102522652	3300032074	Soil	MTHVLVLNLVFFIPATCGATAFALLVYRFLRSASPPAPPLDGGSKAPRPAAGPDDLARSA
Ga0335085_115791662	3300032770	Soil	MTHLLFLNLVFFVPAACGASAFVFCISRILRVAPPPASPEDGGSKVPLPAAGPDDLARSA
Ga0335085_116012642	3300032770	Soil	MTHVVLLNLVFFIPATCGATAFAVIVYRWFLRTEAPPAPDGPGGAKLPVAPVGPDDL
Ga0335081_114794982	3300032892	Soil	CDMTHIVLLNLVFFIPATCGATAFALFVYRFLRSAPPPASSPPGGGSKAPLPAVGPDDLARSA
Ga0335076_102479581	3300032955	Soil	MTHVLLLNLVFFAPGTCGATAFAFIIRRILRSAPPPAWPPPEGGSRVPL
Ga0314862_0102322_285_467	3300033803	Peatland	MTHVLLLNLVFFVPAASGASAFAFCIYRLLRAAPPPAPPVDGGSKVPLPAAGPDDLARSA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070375

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences