Metagenome / Metatranscriptome Family F070374

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070374
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	48 residues
Representative Sequence	MDDLYAINAAKTEFREGFNLGDTSRILAIADPDLVNFSDGAPSE
Number of Associated Samples	95
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	91.06 %
% of genes near scaffold ends (potentially truncated)	97.56 %
% of genes from short scaffolds (< 2000 bps)	89.43 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (75.610 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (25.203 % of family members)
Environment Ontology (ENVO)	Unclassified (45.528 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.341 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.72% β-sheet: 0.00% Coil/Unstructured: 65.28%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF02683	DsbD	9.76
PF07992	Pyr_redox_2	5.69
PF07681	DoxX	4.07
PF02627	CMD	3.25
PF00578	AhpC-TSA	3.25
PF06628	Catalase-rel	2.44
PF08534	Redoxin	2.44
PF12974	Phosphonate-bd	2.44
PF13490	zf-HC2	1.63
PF00106	adh_short	1.63
PF13411	MerR_1	0.81
PF12833	HTH_18	0.81
PF13505	OMP_b-brl	0.81
PF07883	Cupin_2	0.81
PF12704	MacB_PCD	0.81
PF06751	EutB	0.81
PF00403	HMA	0.81
PF08327	AHSA1	0.81
PF00111	Fer2	0.81
PF14384	BrnA_antitoxin	0.81
PF00486	Trans_reg_C	0.81
PF14659	Phage_int_SAM_3	0.81
PF13602	ADH_zinc_N_2	0.81
PF00440	TetR_N	0.81
PF08281	Sigma70_r4_2	0.81
PF11746	DUF3303	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	4.07
COG4270	Uncharacterized membrane protein	Function unknown [S]	4.07
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	3.25
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	3.25
COG0753	Catalase	Inorganic ion transport and metabolism [P]	2.44
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	0.81
COG2608	Copper chaperone CopZ	Inorganic ion transport and metabolism [P]	0.81
COG4303	Ethanolamine ammonia-lyase, large subunit	Amino acid transport and metabolism [E]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.42 %
Unclassified	root	N/A	23.58 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.42 %
Unclassified	root	N/A	23.58 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.61 %
Unclassified	root	N/A	23.58 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.81 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	44.72 %
Unclassified	root	N/A	23.58 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	24.39 %
Unclassified	root	N/A	23.58 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.25 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	0.81 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.39 %
Unclassified	root	N/A	23.58 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.25 %
Halobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	0.81 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.39 %
Unclassified	root	N/A	23.58 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.25 %
Natrialbales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales	0.81 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.39 %
Unclassified	root	N/A	23.58 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.25 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.81 %
Natrialbaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.39 %
Unclassified	root	N/A	23.58 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.25 %
Natronorubrum	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natronorubrum	0.81 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.39 %
Unclassified	root	N/A	23.58 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.25 %
Natronorubrum thiooxidans	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natronorubrum → Natronorubrum thiooxidans	0.81 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10142912	All Organisms → cellular organisms → Bacteria	977	Open in IMG/M
3300002245\|JGIcombinedJ26739_100237921	Not Available	1711	Open in IMG/M
3300002245\|JGIcombinedJ26739_101059338	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300002910\|JGI25615J43890_1075692	All Organisms → cellular organisms → Bacteria → Acidobacteria	584	Open in IMG/M
3300002914\|JGI25617J43924_10108218	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300003350\|JGI26347J50199_1021086	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300003352\|JGI26345J50200_1000539	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3126	Open in IMG/M
3300004082\|Ga0062384_100175859	All Organisms → cellular organisms → Bacteria → Acidobacteria	1240	Open in IMG/M
3300004082\|Ga0062384_100206235	All Organisms → cellular organisms → Bacteria	1163	Open in IMG/M
3300004091\|Ga0062387_100720856	All Organisms → cellular organisms → Bacteria → Acidobacteria	733	Open in IMG/M
3300005332\|Ga0066388_104279217	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300005332\|Ga0066388_105503277	Not Available	641	Open in IMG/M
3300005439\|Ga0070711_100409135	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1103	Open in IMG/M
3300005921\|Ga0070766_10692468	Not Available	689	Open in IMG/M
3300006175\|Ga0070712_101435668	Not Available	602	Open in IMG/M
3300006806\|Ga0079220_10070740	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1718	Open in IMG/M
3300007255\|Ga0099791_10184218	All Organisms → cellular organisms → Bacteria	982	Open in IMG/M
3300007258\|Ga0099793_10616655	Not Available	544	Open in IMG/M
3300009038\|Ga0099829_10408549	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300009088\|Ga0099830_10088211	All Organisms → cellular organisms → Bacteria	2291	Open in IMG/M
3300009089\|Ga0099828_10433187	All Organisms → cellular organisms → Bacteria → Acidobacteria	1186	Open in IMG/M
3300009143\|Ga0099792_11153880	Not Available	524	Open in IMG/M
3300009638\|Ga0116113_1159273	All Organisms → cellular organisms → Bacteria → Acidobacteria	569	Open in IMG/M
3300010366\|Ga0126379_11550051	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300010366\|Ga0126379_11698369	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	736	Open in IMG/M
3300011269\|Ga0137392_10291184	All Organisms → cellular organisms → Bacteria → Acidobacteria	1349	Open in IMG/M
3300011269\|Ga0137392_10409485	All Organisms → cellular organisms → Bacteria	1126	Open in IMG/M
3300011271\|Ga0137393_10034681	All Organisms → cellular organisms → Bacteria	3851	Open in IMG/M
3300011271\|Ga0137393_11000048	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	712	Open in IMG/M
3300011271\|Ga0137393_11454483	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575	Open in IMG/M
3300012125\|Ga0154006_1046436	Not Available	541	Open in IMG/M
3300012189\|Ga0137388_10077169	All Organisms → cellular organisms → Bacteria → Acidobacteria	2796	Open in IMG/M
3300012189\|Ga0137388_11802677	Not Available	544	Open in IMG/M
3300012202\|Ga0137363_10202047	All Organisms → cellular organisms → Bacteria	1595	Open in IMG/M
3300012203\|Ga0137399_11405786	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
3300012363\|Ga0137390_11438014	Not Available	632	Open in IMG/M
3300012400\|Ga0134048_1290193	Not Available	1964	Open in IMG/M
3300012582\|Ga0137358_10123482	All Organisms → cellular organisms → Bacteria → Proteobacteria	1760	Open in IMG/M
3300012683\|Ga0137398_10871631	All Organisms → cellular organisms → Bacteria → Acidobacteria	628	Open in IMG/M
3300012917\|Ga0137395_10009720	All Organisms → cellular organisms → Bacteria → Acidobacteria	5186	Open in IMG/M
3300012917\|Ga0137395_10495947	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300012918\|Ga0137396_10891427	Not Available	652	Open in IMG/M
3300012923\|Ga0137359_11703596	Not Available	518	Open in IMG/M
3300012925\|Ga0137419_10451466	All Organisms → cellular organisms → Bacteria → Acidobacteria	1013	Open in IMG/M
3300012925\|Ga0137419_11257595	Not Available	621	Open in IMG/M
3300012927\|Ga0137416_10553955	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	996	Open in IMG/M
3300014654\|Ga0181525_10073010	All Organisms → cellular organisms → Bacteria → Acidobacteria	1918	Open in IMG/M
3300015052\|Ga0137411_1117203	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300015245\|Ga0137409_10469947	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1079	Open in IMG/M
3300018019\|Ga0187874_10070018	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1578	Open in IMG/M
3300020062\|Ga0193724_1052410	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300020580\|Ga0210403_10793665	All Organisms → cellular organisms → Bacteria → Acidobacteria	753	Open in IMG/M
3300020582\|Ga0210395_11165447	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300020583\|Ga0210401_10373630	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1287	Open in IMG/M
3300020583\|Ga0210401_10637853	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	926	Open in IMG/M
3300021086\|Ga0179596_10573105	All Organisms → cellular organisms → Bacteria → Acidobacteria	573	Open in IMG/M
3300021180\|Ga0210396_11039651	Not Available	692	Open in IMG/M
3300021401\|Ga0210393_10225155	All Organisms → cellular organisms → Bacteria	1519	Open in IMG/M
3300021401\|Ga0210393_11027557	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	667	Open in IMG/M
3300021403\|Ga0210397_10807594	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300021404\|Ga0210389_11094845	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	616	Open in IMG/M
3300021405\|Ga0210387_10289849	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1438	Open in IMG/M
3300021406\|Ga0210386_10573227	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	975	Open in IMG/M
3300021407\|Ga0210383_10009618	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8278	Open in IMG/M
3300021407\|Ga0210383_10175327	All Organisms → cellular organisms → Bacteria	1828	Open in IMG/M
3300021420\|Ga0210394_10705141	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300021420\|Ga0210394_11602772	Not Available	548	Open in IMG/M
3300021432\|Ga0210384_10315446	All Organisms → cellular organisms → Bacteria	1408	Open in IMG/M
3300021477\|Ga0210398_10571445	All Organisms → cellular organisms → Bacteria	919	Open in IMG/M
3300022733\|Ga0224562_1013720	Not Available	652	Open in IMG/M
3300025915\|Ga0207693_11199506	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300025916\|Ga0207663_10301817	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1197	Open in IMG/M
3300026285\|Ga0209438_1182776	Not Available	554	Open in IMG/M
3300026481\|Ga0257155_1089081	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300026489\|Ga0257160_1104125	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300026557\|Ga0179587_10710126	Not Available	662	Open in IMG/M
3300027376\|Ga0209004_1013602	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1236	Open in IMG/M
3300027376\|Ga0209004_1096126	Not Available	502	Open in IMG/M
3300027548\|Ga0209523_1011373	All Organisms → cellular organisms → Bacteria	1652	Open in IMG/M
3300027548\|Ga0209523_1045063	All Organisms → cellular organisms → Bacteria	900	Open in IMG/M
3300027575\|Ga0209525_1002076	All Organisms → cellular organisms → Bacteria	4446	Open in IMG/M
3300027635\|Ga0209625_1135419	Not Available	552	Open in IMG/M
3300027667\|Ga0209009_1002156	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5187	Open in IMG/M
3300027701\|Ga0209447_10095527	All Organisms → cellular organisms → Bacteria → Acidobacteria	817	Open in IMG/M
3300027767\|Ga0209655_10140187	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300027768\|Ga0209772_10066063	All Organisms → cellular organisms → Bacteria	1088	Open in IMG/M
3300027795\|Ga0209139_10162161	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	791	Open in IMG/M
3300027846\|Ga0209180_10650734	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300027874\|Ga0209465_10056442	All Organisms → cellular organisms → Bacteria	1887	Open in IMG/M
3300027889\|Ga0209380_10028872	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natronorubrum → Natronorubrum thiooxidans	3128	Open in IMG/M
3300027889\|Ga0209380_10095289	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1717	Open in IMG/M
3300027903\|Ga0209488_11120043	All Organisms → cellular organisms → Bacteria → Acidobacteria	536	Open in IMG/M
3300027908\|Ga0209006_10420012	Not Available	1124	Open in IMG/M
3300028047\|Ga0209526_10579817	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	721	Open in IMG/M
3300028906\|Ga0308309_11538414	Not Available	567	Open in IMG/M
3300030524\|Ga0311357_11498593	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300030842\|Ga0075404_11357678	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300031057\|Ga0170834_113542494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	517	Open in IMG/M
3300031122\|Ga0170822_15612654	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300031233\|Ga0302307_10134741	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1285	Open in IMG/M
3300031474\|Ga0170818_105454853	All Organisms → cellular organisms → Bacteria	1198	Open in IMG/M
3300031682\|Ga0318560_10040513	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2255	Open in IMG/M
3300031708\|Ga0310686_112519737	Not Available	832	Open in IMG/M
3300031715\|Ga0307476_11226546	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300031718\|Ga0307474_10692320	Not Available	805	Open in IMG/M
3300031720\|Ga0307469_11776773	Not Available	595	Open in IMG/M
3300031754\|Ga0307475_10013524	All Organisms → cellular organisms → Bacteria	5530	Open in IMG/M
3300031754\|Ga0307475_11093257	All Organisms → cellular organisms → Bacteria → Acidobacteria	624	Open in IMG/M
3300031754\|Ga0307475_11277393	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300031823\|Ga0307478_10145094	All Organisms → cellular organisms → Bacteria	1879	Open in IMG/M
3300031823\|Ga0307478_10335191	All Organisms → cellular organisms → Bacteria	1244	Open in IMG/M
3300031823\|Ga0307478_10596886	All Organisms → cellular organisms → Bacteria → Acidobacteria	923	Open in IMG/M
3300031962\|Ga0307479_10010409	All Organisms → cellular organisms → Bacteria	8639	Open in IMG/M
3300031962\|Ga0307479_10645745	All Organisms → cellular organisms → Bacteria → Acidobacteria	1039	Open in IMG/M
3300031962\|Ga0307479_10667476	Not Available	1019	Open in IMG/M
3300031962\|Ga0307479_10758570	All Organisms → cellular organisms → Bacteria → Acidobacteria	947	Open in IMG/M
3300031962\|Ga0307479_11453742	Not Available	643	Open in IMG/M
3300032174\|Ga0307470_10118258	All Organisms → cellular organisms → Bacteria	1558	Open in IMG/M
3300032180\|Ga0307471_100495813	All Organisms → cellular organisms → Bacteria	1368	Open in IMG/M
3300032180\|Ga0307471_102013248	Not Available	724	Open in IMG/M
3300032180\|Ga0307471_102773931	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	622	Open in IMG/M
3300032205\|Ga0307472_100025023	All Organisms → cellular organisms → Bacteria	3352	Open in IMG/M
3300032205\|Ga0307472_101853560	Not Available	600	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.19%
Host-Associated	Host-Associated	0.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.43%
Aquatic	Environmental → Aquatic	9.76%
Fungi	Host-Associated → Fungi	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.80%
Freshwater	Environmental → Aquatic → Freshwater	9.76%
Peat	Environmental → Terrestrial → Peat	1.63%
Mycelium	Host-Associated → Fungi → Mycelium	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.11%
Loam	Environmental → Terrestrial → Soil → Loam	18.70%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.76%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.63%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	35.77%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.08%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.45%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.25%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.44%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.63%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.81%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	25.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.07%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	16.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.76%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	7.32%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.25%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.44%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.44%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.44%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.44%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.63%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.63%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.81%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.81%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.81%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300003350	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3	Environmental	Open in IMG/M
3300003352	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009638	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012125	Attine ant fungus gardens microbial communities from Florida, USA - TSFL090 MetaG	Host-Associated	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012400	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300022733	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU3	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027376	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027575	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030842	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB3 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_101429123	3300001867	Forest Soil	MDDFYYAINAAKTEFREGFNAGDAARILAIADPELVSFSDGQPSEFGKSGLE
JGIcombinedJ26739_1002379211	3300002245	Forest Soil	MDNLYAINLAKTEFREGFNLSDAVRILAITDADLVNFSSEQPSGFGKSGLDHLAIRLQSLFEQFA
JGIcombinedJ26739_1010593381	3300002245	Forest Soil	MDDLYAINAAKTEFREGFNLGDTSRILAIADPDLVNFSDGAPSE
JGI25615J43890_10756922	3300002910	Grasslands Soil	MDDLYAINVAKSEFRECFNLADTSRLLAIADSDLVNFSDG
JGI25617J43924_101082181	3300002914	Grasslands Soil	MDDLYAINAAKSEFREGFNLADPSRMLAIADPDLVNFSDG
JGI26347J50199_10210861	3300003350	Bog Forest Soil	MDDLYAINAAKTEFRECFSLGDTSRMLAIADPDLVTFSDGQPSEF
JGI26345J50200_10005391	3300003352	Bog Forest Soil	MDDLYAINVAKTEFREGYNLGDAARILAAADPDLVNFSSEQ
Ga0062384_1001758592	3300004082	Bog Forest Soil	MDDLYKINMAKSEFRDSFNLSDASRLLAIADPDLVNFSDGQPCE
Ga0062384_1002062351	3300004082	Bog Forest Soil	MDDLYTINVAKSEFRDSFNFSDVAKLLAIADPDLVNFSDGQPCEFGGS
Ga0062387_1007208561	3300004091	Bog Forest Soil	MDDLYAINVAKSEFRDSVNFSDIAKLLAIADPDLVNFSDGQPC
Ga0066388_1042792171	3300005332	Tropical Forest Soil	MDDLYAINVAKTEFREAFNHGDPSRILEIADPGLVNFSDRQPSEFGESGLASLKRRL
Ga0066388_1055032772	3300005332	Tropical Forest Soil	MDDMYAINVAKTEFREVFNHGDPSRILEIADPGLVNFSDRQPSEFGESG
Ga0070711_1004091351	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MDDLYAVNAAKSEFREGLNRGDTSRVLAIADPDLVNFSDGQPSEFGESGL
Ga0070766_106924682	3300005921	Soil	MDDLYAINAAKSEFRDCFNLSDVSRLLAIADPELVNFSDGQPCE
Ga0070712_1014356682	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VDDLYAINAAKTEFREAFNSGDVSVLLALADPDLVNFADGHPSEFGEGGL
Ga0079220_100707401	3300006806	Agricultural Soil	VDDLYAINAAKTEFREAFNSGDVSVLLALADPDLVNFADGHPSEFGE
Ga0099791_101842182	3300007255	Vadose Zone Soil	MDDLYAINAAKSEFREGFNLADPSRMLAIADPHLVNFSDGQPSEFGGANWMP*
Ga0099793_106166551	3300007258	Vadose Zone Soil	MDDLYAINAAKSEFREGFNLADPSRMLAIADPDLVNFSDGQPSEF
Ga0099829_104085492	3300009038	Vadose Zone Soil	MDDLFAINAAKTEFRECFNLGDASRVLAIADPDLVSFSDGQPSEFGASGLEALKTRLT
Ga0099830_100882111	3300009088	Vadose Zone Soil	MDDLFAINTAKTEFRECFNLGDASRVLAIADPDLVSFSDGQPSEFG
Ga0099828_104331872	3300009089	Vadose Zone Soil	MAMDDLYAINAAKGEFRDCFNFSDVSRLVAIADPEMVNFSDGQPCGFRRGGWMHLKLG*
Ga0099792_111538801	3300009143	Vadose Zone Soil	MDNLFAINAAKTEFREGFNLGDASRVLAIADPDLVSFSDGQPSEFCASGLQ
Ga0116113_11592731	3300009638	Peatland	MDDLYAINVAKSEFRNCFNFSDVSKLLAIADPDLVNFSDGRPCE
Ga0126379_115500512	3300010366	Tropical Forest Soil	MDDLYAINVAKSEFRECFNCGDTSRMLAIADLDLVNLSDGQGRRSR
Ga0126379_116983691	3300010366	Tropical Forest Soil	MDDLYAINVAKTEFREAFNHGDPSRILEIADHGLVNLSDRRPSEFGESGL
Ga0137392_102911841	3300011269	Vadose Zone Soil	MAMDDLYAINAAKGEFRDCFNFSDVSRLLSIADPEMVNFSD
Ga0137392_104094851	3300011269	Vadose Zone Soil	MAMDDLYAINAAKGEFRDCFNFSDVSRLLSIADPEMVNFSDGQPCGFRRGGWMH*
Ga0137393_100346811	3300011271	Vadose Zone Soil	MDNLFAINAAKTEFREGFNLGDASRVLAIADPDLVSF
Ga0137393_110000481	3300011271	Vadose Zone Soil	MAMDDLYSINAAKSEFRDCFNLSDVSRLLAITDADLVN
Ga0137393_114544831	3300011271	Vadose Zone Soil	MDDLYAINAAKTEFREAFNQGDPCRIIAIAHPDLINFSDGQPSEFGETGLQSFKRR
Ga0154006_10464361	3300012125	Attine Ant Fungus Gardens	MDELYAINAAKTAFRDCFNFADSSRLLGIADPELVNFSDGQPS
Ga0137388_100771692	3300012189	Vadose Zone Soil	MDDLYAINAAKGEFRDCFNFSDVSRLLSIADPEMVNFSDGQPCGFRRGGWMH*
Ga0137388_118026771	3300012189	Vadose Zone Soil	MGHGDKGMDDLFAINAAKTEFRECFNLGDVSRVLAIADPDLVSFSDGQ
Ga0137363_102020471	3300012202	Vadose Zone Soil	MDNLFAINAAKTEFREGFNLGDASRVLAIADPDLVSFSDGQPSEFCASGLEVLKTRLTNL
Ga0137399_114057862	3300012203	Vadose Zone Soil	YAINAAKGEFRDCFNFSDVSRLLAIADPEMVNFSDSQPCGFRRGGWMHLKLG*
Ga0137390_114380142	3300012363	Vadose Zone Soil	MDDLFAINTAKTEFRECFNLGDASRVLAIADPDLVSFSDGQPSEFGASGLEALKTRLT
Ga0134048_12901932	3300012400	Grasslands Soil	MLELYAINVAKSEFREGFNLGDTSRILAVADPDLVNFSDAQP
Ga0137358_101234821	3300012582	Vadose Zone Soil	MEHGDKGMDDLFAINAAKTEFRECFNLGDVSRVLAIADPDL
Ga0137398_108716311	3300012683	Vadose Zone Soil	MAMDDLYAINAAKGEFRDCFNFSDVSRLLAIADPEMVNFSDGQPCGF
Ga0137395_100097205	3300012917	Vadose Zone Soil	MAMDDLYAINAAKGEFRDCFNFSDVSRLVAIADPEMVNFSDGQPCGFR
Ga0137395_104959471	3300012917	Vadose Zone Soil	MDDLYAINVAKSEFREGFNLGDVSRVLAIADPDLVS
Ga0137396_108914272	3300012918	Vadose Zone Soil	MDNLFAINAAKTEFREGFNLGDASRVLAIADPDLVSFSDGQPSEFGASGL
Ga0137359_117035961	3300012923	Vadose Zone Soil	MDDLFAINAAKTEFRECFNLGDASRVLAIADPDLVSFSDGQPSEFCASGLE
Ga0137419_104514662	3300012925	Vadose Zone Soil	MAMDDLYAINAAKGEFRDCFNFSDVSRLLAIADPE
Ga0137419_112575952	3300012925	Vadose Zone Soil	MDNLFAINAAKTEFRECFNLGDASRVLAIADRDLVSFSDGQPSEFCASGLEVLKTRLTN
Ga0137416_105539552	3300012927	Vadose Zone Soil	MERGDKGMDDLFAINAAKTEFRECFNLEDVSRVLVIADPDLVSFSDAQPSEFGASGLEAL
Ga0181525_100730101	3300014654	Bog	MDDLYTINVAKSEFRDSFNFSDVAKLLAIADPDLVNFSDGQ
Ga0137411_11172031	3300015052	Vadose Zone Soil	MAMDDLYAINGAKSEFRDCFNLSDVSRLLAIADPDLVNF
Ga0137409_104699473	3300015245	Vadose Zone Soil	MDDLYAINAAKSEFREGFNLADPSRMLAIADPDLVNFSDGQPSEFGESGLDALKT
Ga0187874_100700182	3300018019	Peatland	MDDLYAINVAKTEFREAYNRGDAARILAGADPDLVNFS
Ga0193724_10524102	3300020062	Soil	MDDFFAINAAKTEFRECFNLGDASGVLAIADPDLVSFSDGQPSEFGAS
Ga0210403_107936651	3300020580	Soil	MDDLCAINAAKSEFRDCFNLSDVSRLLAIADPEMVNFSDGQP
Ga0210395_111654471	3300020582	Soil	MDDLYAINVAKTEFRDCFNLGDPSRVLAIADPDLVSFSDGQPSEFGGSGLDTLKNRIANLFE
Ga0210401_103736302	3300020583	Soil	MDNLYAINVAKTEFREGFNLGDAARILAITDPDLVNFS
Ga0210401_106378532	3300020583	Soil	MDNLYAINVAKTEFREGFNLGDAARILAITDPDLVNFSSEQPSGFGKSGLDHLAIRLQSL
Ga0179596_105731052	3300021086	Vadose Zone Soil	MDDLYAINAAKGEFRDCFNFSDVSRLVAIADPEMVNFSDGQPCGFRRGGLDAFKTRLE
Ga0210396_110396511	3300021180	Soil	VDDLYAINAAKTEFREAFNCGDVSALLALADPDLVNFSDGHPSEFGDS
Ga0210393_102251552	3300021401	Soil	MDDLYAINVAKSEFRDCFNLSDVSRLLAIADPDLVNFSDGQPC
Ga0210393_110275571	3300021401	Soil	MDDLYAINVAKSEFRDCFNLSDVSRLLAIADPDLVNFSDGQPCEFG
Ga0210397_108075941	3300021403	Soil	MDDLYAINAAKTEFRECFNLGDISKILAIADPDLVGFTDGAP
Ga0210389_110948451	3300021404	Soil	MDDLYAVNVAKTEFREGFNLGDAARILAIADPQLVSFSDGQPSEF
Ga0210387_102898492	3300021405	Soil	MDNLYAINVAKTEFREGFNLGDVARILAVTDPDLVNFSSEQPSGF
Ga0210386_105732272	3300021406	Soil	MDDLYAVSAAKSEFREGLNRGDTSRVLAIADPDLVNFSDGQPSEFGESGLDAL
Ga0210383_100096187	3300021407	Soil	MDELYAINAAKSEFRDSFNFSDPSRFLAIADPELVSFSDGQPSEFGESGLE
Ga0210383_101753272	3300021407	Soil	MDDLYAINAAKSEFRDCFNLSDVSRLLAIADPELVNFSDGQPCEFGASGLDALKTR
Ga0210394_107051412	3300021420	Soil	MDDLYAINVAKSEFRDCFNLSDVSRLLEIADPELVNFSDGQP
Ga0210394_116027721	3300021420	Soil	MDDLYAINQAKTEYRDAFNLGDMQRILALADPELVNFSN
Ga0210384_103154461	3300021432	Soil	MDDLYAINVAKTEFRDCFNLGDPSRVLAIADPDLVSFSDGQPSEFGGSGLDTL
Ga0210398_105714451	3300021477	Soil	MDDLYAINAAKTEFREGFNAGDAARILAIADPELVSFSDGQPSEF
Ga0224562_10137201	3300022733	Soil	MDNLYAINVAKTEFREGFNLGDAAHILATVDPDLVNFSSE
Ga0207693_111995061	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MDDLYAINVAKSEFRDCFNLSDVSRLLAIADPDLVNFSDGQPCEFGASGLD
Ga0207663_103018171	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MDDLYAVNAAKSEFREGLNRGDTSRVLAIADPDLVNFSDGQPSEFGESGLDA
Ga0209438_11827761	3300026285	Grasslands Soil	MDNLFAINAAKTEFRECFNLGDASRVLAIADRDLVSFSDGQPS
Ga0257155_10890812	3300026481	Soil	MDDLFAINAAKTEFRECFNLGDVSRVLAIADPDLV
Ga0257160_11041252	3300026489	Soil	MDDLYAINAAKTEFREGFNLADASRILAVADPDLVNFSDGQPSEFGQSGLDALK
Ga0179587_107101261	3300026557	Vadose Zone Soil	MDDLFAINAAKTEFRECFNLGDVSRVLAIADPDLVSFSDGQPSEFGASGLAA
Ga0209004_10136023	3300027376	Forest Soil	MDDLYAINLAKSEFRECFNLGDTSRLLAIADPDLVNFSDGQPSEFGESGLDAF
Ga0209004_10961262	3300027376	Forest Soil	MDELYAINVAKTEFRDCFNFADVSRLLAIADPELV
Ga0209523_10113731	3300027548	Forest Soil	MDDLFAINAAKTEFRECFNLGDVSRVLAIADPDLVSFSDGQPSEFGASGLEALKG
Ga0209523_10450631	3300027548	Forest Soil	MDDLYAINAAKTEFREAFNHGDPSRILAIADPELISFSDHHPSEFGESGLASLNRRLEKI
Ga0209525_10020769	3300027575	Forest Soil	MDDLLAINTAKSNFRDAFNDGDVDRILAIADLDLVSFSEGQPSEFGRPGLDALK
Ga0209625_11354191	3300027635	Forest Soil	MDDLYAINAAKTEFRECFNLGDISKLLAIADPDLVSFNDGAPSEFGQS
Ga0209009_10021561	3300027667	Forest Soil	MDNLYAINVGKTEFREGFNLGDAARILAIADPDLVNFS
Ga0209447_100955272	3300027701	Bog Forest Soil	MDDLYAINVAKSEFRDSVNFSDIAKLLAIADPDLVNFSDGQPCEFG
Ga0209655_101401871	3300027767	Bog Forest Soil	MDDLYAINVAKTEFREGYNRGDAARILAIVDPDLVNFSSEQPSGFG
Ga0209772_100660632	3300027768	Bog Forest Soil	MDDLYAINVAKSEFRDCFNLSDVSRLLAIADPDLVNFSNGQP
Ga0209139_101621611	3300027795	Bog Forest Soil	MDDLYAINVAKTEFREGYNRGDAARILAIVDPDLVNFSSEQPSGFGKNGLDDL
Ga0209180_106507341	3300027846	Vadose Zone Soil	MDDLYAINAAKTEFREAFNQGDPRGIIAIAHPDLINFSDGQPSEFGETGLQSFKRRLEKLFADYTA
Ga0209465_100564421	3300027874	Tropical Forest Soil	MDDLYAINVAKSEFRESFNLGDTSRLLTIADPDVVNFSDGQPSEFGENGLDAFK
Ga0209380_100288721	3300027889	Soil	MDDLYAINAAKSEFRDCFNLSDVSRLLAIADPELVNFSDGQPCEFGA
Ga0209380_100952891	3300027889	Soil	MDNLYAINVAKTEFREGFNLGDVARILAVTDPDLVNFSSEQPSGFGKSGLDH
Ga0209488_111200432	3300027903	Vadose Zone Soil	MDDLYAINAAKGEFRDCFNFSDVSRLVAIADPEMVNFS
Ga0209006_104200121	3300027908	Forest Soil	MDNLYAINLAKTEFREGFNLSDAVRILAITDADLVNFSSEQPSGFGKSGLDHLAIRLQSLFEQF
Ga0209526_105798171	3300028047	Forest Soil	MEHGDKEMDLYAINAAKSEFREGFNLGDTSRVLAIADPDLVNFSDGQPSEFGAS
Ga0308309_115384141	3300028906	Soil	MDDFYAINAAKTEFREGFNLGDVARILAIADPDLVSFS
Ga0311357_114985932	3300030524	Palsa	MDDLLAINTAKSKFRDAFNNGDVDRILAMADPDLVSFSEGQPSEFG
Ga0075404_113576781	3300030842	Soil	MDDLYAINVVKTEFREGFNLGDTSRVLAIADPDLVNFSDGQPSEFGESGLD
Ga0170834_1135424941	3300031057	Forest Soil	MDDFYAINAAKTEFRDSFNLGDVARLLAIADPQLVSFSDGQPSEFGKSGLEALEIRLKSL
Ga0170822_156126542	3300031122	Forest Soil	MDDLYAVNAAKSEFREGLNRGDTSRVLAIADPDLVNFSDGQPSEFGESGLD
Ga0302307_101347413	3300031233	Palsa	MDDLFAINAAKTKFRDSFNDGDVESLLALADPDLVSFSDAQPSEFGMPGLDALKI
Ga0170818_1054548531	3300031474	Forest Soil	MDDLYAINAAKSEFRDCFNLSDVSRLLAIADPDLVNFSDGQPCEFGTSGLDAL
Ga0318560_100405131	3300031682	Soil	MDDLYAINVAKSEFRESFNLGDASRLLTIADPDVVNFSDGQPSEFGENGLDAFKTRL
Ga0310686_1125197372	3300031708	Soil	MDDLYAINVAKTEFREGFNLGEAARILAIVDPDLVNFSSEQPSGFGKSD
Ga0307476_112265461	3300031715	Hardwood Forest Soil	MDNLYAINVAKTEFREGFNLGDAARILAITDPDLVNFSSEQPSGFGKSGL
Ga0307474_106923201	3300031718	Hardwood Forest Soil	MDDFYAINAAKTEFREGFNLGDVARILAIADPDLVSFSDGQPSEFG
Ga0307469_117767731	3300031720	Hardwood Forest Soil	MDDFYYAINAAKTEFREGFNAGDAARILAIADPELVSFSDGQPSEFGKSGLETLEIRL
Ga0307475_100135248	3300031754	Hardwood Forest Soil	VDDLYAINAAKTEFREAFNSGDVSVLLALADPDVVNFSDGH
Ga0307475_110932571	3300031754	Hardwood Forest Soil	MDDFYAINAAKTEFREGFNAGDAARILAIADPELVSFS
Ga0307475_112773932	3300031754	Hardwood Forest Soil	MNDLYAINAAKTEFRECFNFGDTSRFLAIADPELVNFPDGAPSEFGKSGLD
Ga0307478_101450941	3300031823	Hardwood Forest Soil	VDDLYAINAAKTEFREAFNSGDVSVLLALADPDVVNFSDGHPSEFGESGLDALRN
Ga0307478_103351911	3300031823	Hardwood Forest Soil	MDDLYAVNAVKSEFREGLNRGDTSRVLAIADPDLVNFSDGQPSEFGESGLDALKSRLANLFE
Ga0307478_105968861	3300031823	Hardwood Forest Soil	MDDSYTINAAKTEFREGFNCGDTSRIMAIVDPDLVDFSDGQPSEFAGSGSDALKS
Ga0307479_100104091	3300031962	Hardwood Forest Soil	MDELFTVNAAKTEFREAFNLGDVARFLAIADPELV
Ga0307479_106457453	3300031962	Hardwood Forest Soil	MDDMYAINAAKTEFRECFNLGDVSKILAIVDPDLVSFNDGAP
Ga0307479_106674762	3300031962	Hardwood Forest Soil	VDDLYAINAAKTEFREAFNCGDVSALLALADPDLVNFSDGHPSEFG
Ga0307479_107585702	3300031962	Hardwood Forest Soil	VDDLYEINVAKTEFRDCFNFSDASRLLAIADPDFVNFSHGQPSEFGREGLDSLRI
Ga0307479_114537421	3300031962	Hardwood Forest Soil	MDDLYKINVAKSEFREGLNLGDASRVLAIVDPDLVNFSDGHPSDF
Ga0307470_101182581	3300032174	Hardwood Forest Soil	MDDLFAINAAKTEFRECFNLGDVSRVLAIADPDLVS
Ga0307471_1004958133	3300032180	Hardwood Forest Soil	MDELYAINVAKSEFREGFNLGDTSRILAIADPDLVNF
Ga0307471_1020132481	3300032180	Hardwood Forest Soil	MAMDDLYAINVAKSEFRDCFNLSDVSRLLAIADPDLV
Ga0307471_1027739311	3300032180	Hardwood Forest Soil	MDDLYAINAAKTEFREAFNQGDACRIIAIADPDLINFSDGQPSEFGESRLESFKRRLEKL
Ga0307472_1000250234	3300032205	Hardwood Forest Soil	MLELYAINVAKSEFREGFNLGDTSRILAVADPDLVNFSDAQPSEFGESGLDAWKAR
Ga0307472_1018535601	3300032205	Hardwood Forest Soil	MDDLYAINAAKTEFRDAFNLGDVARLLAIADPDLISFSDGHPSEFGKSGLDAF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070374

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences