Metagenome / Metatranscriptome Family F070343

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F070343
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	51 residues
Representative Sequence	MQKILGMMILIAGASQFAMATAVPEIGVGSAGSAIALISGAMLVIRGRRK
Number of Associated Samples	86
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	79.51 %
% of genes near scaffold ends (potentially truncated)	26.83 %
% of genes from short scaffolds (< 2000 bps)	76.42 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (60.163 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (13.821 % of family members)
Environment Ontology (ENVO)	Unclassified (19.512 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.659 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 52.56% β-sheet: 0.00% Coil/Unstructured: 47.44%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF09721	Exosortase_EpsH	9.35
PF00890	FAD_binding_2	4.67
PF08447	PAS_3	4.67
PF04452	Methyltrans_RNA	1.87
PF03060	NMO	1.87
PF08668	HDOD	1.87
PF13419	HAD_2	1.87
PF01425	Amidase	0.93
PF00326	Peptidase_S9	0.93
PF13807	GNVR	0.93
PF13709	DUF4159	0.93
PF13677	MotB_plug	0.93
PF13671	AAA_33	0.93
PF07624	PSD2	0.93
PF13620	CarboxypepD_reg	0.93
PF01522	Polysacc_deac_1	0.93
PF00903	Glyoxalase	0.93
PF02446	Glyco_hydro_77	0.93
PF01979	Amidohydro_1	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0516	IMP dehydrogenase/GMP reductase	Nucleotide transport and metabolism [F]	1.87
COG1385	16S rRNA U1498 N3-methylase RsmE	Translation, ribosomal structure and biogenesis [J]	1.87
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	1.87
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.93
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.93
COG1640	4-alpha-glucanotransferase	Carbohydrate transport and metabolism [G]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.16 %
All Organisms	root	All Organisms	39.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.16 %
cellular organisms	root	All Organisms → cellular organisms	39.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.16 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	39.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.16 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	24.39 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.63 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.16 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	17.89 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.63 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.63 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.16 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	15.45 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.63 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.63 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.16 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	15.45 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.63 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.63 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.16 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	14.63 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.63 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.63 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.81 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.16 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	14.63 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.63 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.63 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.81 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.16 %
Candidatus Sulfopaludibacter sp. SbA6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	13.82 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.63 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.63 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.63 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	0.81 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.81 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005329\|Ga0070683_100224012	Not Available	1787	Open in IMG/M
3300005335\|Ga0070666_10003457	All Organisms → cellular organisms → Bacteria → Proteobacteria	9570	Open in IMG/M
3300005445\|Ga0070708_100310293	Not Available	1486	Open in IMG/M
3300005458\|Ga0070681_10006273	All Organisms → cellular organisms → Bacteria	11561	Open in IMG/M
3300005533\|Ga0070734_10177075	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1232	Open in IMG/M
3300005533\|Ga0070734_10300091	All Organisms → cellular organisms → Bacteria → Terrabacteria group	918	Open in IMG/M
3300005534\|Ga0070735_10461395	Not Available	758	Open in IMG/M
3300005538\|Ga0070731_10005087	All Organisms → cellular organisms → Bacteria	10989	Open in IMG/M
3300005538\|Ga0070731_10005087	All Organisms → cellular organisms → Bacteria	10989	Open in IMG/M
3300005541\|Ga0070733_11186267	Not Available	511	Open in IMG/M
3300005544\|Ga0070686_101153456	Not Available	642	Open in IMG/M
3300005547\|Ga0070693_100259249	Not Available	1156	Open in IMG/M
3300005548\|Ga0070665_100492507	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1237	Open in IMG/M
3300005591\|Ga0070761_10115426	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1556	Open in IMG/M
3300005591\|Ga0070761_10744029	Not Available	615	Open in IMG/M
3300005614\|Ga0068856_100007769	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	10476	Open in IMG/M
3300005614\|Ga0068856_100780843	Not Available	975	Open in IMG/M
3300005712\|Ga0070764_11034858	Not Available	518	Open in IMG/M
3300005921\|Ga0070766_10430455	Not Available	868	Open in IMG/M
3300005921\|Ga0070766_10796508	Not Available	644	Open in IMG/M
3300005993\|Ga0080027_10260886	Not Available	685	Open in IMG/M
3300006052\|Ga0075029_100410031	Not Available	882	Open in IMG/M
3300006059\|Ga0075017_100883319	Not Available	693	Open in IMG/M
3300006176\|Ga0070765_100732916	All Organisms → cellular organisms → Bacteria	934	Open in IMG/M
3300006638\|Ga0075522_10060784	All Organisms → cellular organisms → Bacteria	2149	Open in IMG/M
3300006638\|Ga0075522_10114734	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1440	Open in IMG/M
3300009093\|Ga0105240_10423846	Not Available	1494	Open in IMG/M
3300009093\|Ga0105240_10706845	Not Available	1100	Open in IMG/M
3300009174\|Ga0105241_10035124	All Organisms → cellular organisms → Bacteria	3770	Open in IMG/M
3300009545\|Ga0105237_11643275	Not Available	649	Open in IMG/M
3300009551\|Ga0105238_10012501	All Organisms → cellular organisms → Bacteria	8563	Open in IMG/M
3300009553\|Ga0105249_10776187	Not Available	1021	Open in IMG/M
3300009764\|Ga0116134_1044776	Not Available	1709	Open in IMG/M
3300009764\|Ga0116134_1044776	Not Available	1709	Open in IMG/M
3300009764\|Ga0116134_1044776	Not Available	1709	Open in IMG/M
3300010373\|Ga0134128_11114045	Not Available	871	Open in IMG/M
3300010373\|Ga0134128_11114045	Not Available	871	Open in IMG/M
3300010373\|Ga0134128_11114045	Not Available	871	Open in IMG/M
3300010396\|Ga0134126_10554592	Not Available	1319	Open in IMG/M
3300010396\|Ga0134126_12392164	Not Available	575	Open in IMG/M
3300011120\|Ga0150983_10500553	Not Available	515	Open in IMG/M
3300011120\|Ga0150983_14526032	Not Available	549	Open in IMG/M
3300011120\|Ga0150983_14526032	Not Available	549	Open in IMG/M
3300011120\|Ga0150983_14762977	Not Available	1307	Open in IMG/M
3300011120\|Ga0150983_16123238	Not Available	676	Open in IMG/M
3300011120\|Ga0150983_16123238	Not Available	676	Open in IMG/M
3300012985\|Ga0164308_12084621	Not Available	528	Open in IMG/M
3300013296\|Ga0157374_10332298	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1508	Open in IMG/M
3300013297\|Ga0157378_13269797	Not Available	503	Open in IMG/M
3300013307\|Ga0157372_10813107	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1086	Open in IMG/M
3300014167\|Ga0181528_10048345	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	2360	Open in IMG/M
3300014168\|Ga0181534_10186127	Not Available	1079	Open in IMG/M
3300014201\|Ga0181537_10000614	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	33109	Open in IMG/M
3300014325\|Ga0163163_10005009	All Organisms → cellular organisms → Bacteria	11415	Open in IMG/M
3300014325\|Ga0163163_10006692	All Organisms → cellular organisms → Bacteria	10099	Open in IMG/M
3300014492\|Ga0182013_10034657	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	4139	Open in IMG/M
3300014655\|Ga0181516_10443156	Not Available	665	Open in IMG/M
3300014657\|Ga0181522_10134176	All Organisms → cellular organisms → Bacteria	1442	Open in IMG/M
3300014838\|Ga0182030_10007031	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	23584	Open in IMG/M
3300014838\|Ga0182030_10385536	Not Available	1471	Open in IMG/M
3300014838\|Ga0182030_10385536	Not Available	1471	Open in IMG/M
3300014838\|Ga0182030_10385536	Not Available	1471	Open in IMG/M
3300014838\|Ga0182030_10520299	Not Available	1179	Open in IMG/M
3300017970\|Ga0187783_10527040	Not Available	856	Open in IMG/M
3300018033\|Ga0187867_10171443	All Organisms → cellular organisms → Bacteria → Acidobacteria	1242	Open in IMG/M
3300018033\|Ga0187867_10171443	All Organisms → cellular organisms → Bacteria → Acidobacteria	1242	Open in IMG/M
3300019240\|Ga0181510_1475308	Not Available	543	Open in IMG/M
3300019258\|Ga0181504_1317736	Not Available	661	Open in IMG/M
3300021168\|Ga0210406_10763902	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	739	Open in IMG/M
3300021170\|Ga0210400_11339526	Not Available	572	Open in IMG/M
3300021170\|Ga0210400_11339526	Not Available	572	Open in IMG/M
3300021181\|Ga0210388_10311674	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1383	Open in IMG/M
3300021181\|Ga0210388_10810266	Not Available	811	Open in IMG/M
3300021407\|Ga0210383_11252516	Not Available	622	Open in IMG/M
3300021420\|Ga0210394_10445578	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1139	Open in IMG/M
3300021433\|Ga0210391_10167876	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1728	Open in IMG/M
3300021475\|Ga0210392_10016916	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	4053	Open in IMG/M
3300021477\|Ga0210398_11224216	Not Available	592	Open in IMG/M
3300022533\|Ga0242662_10307926	Not Available	530	Open in IMG/M
3300022533\|Ga0242662_10307926	Not Available	530	Open in IMG/M
3300022713\|Ga0242677_1090960	Not Available	504	Open in IMG/M
3300022713\|Ga0242677_1090960	Not Available	504	Open in IMG/M
3300022721\|Ga0242666_1191770	Not Available	518	Open in IMG/M
3300022722\|Ga0242657_1129021	Not Available	649	Open in IMG/M
3300022722\|Ga0242657_1129021	Not Available	649	Open in IMG/M
3300025625\|Ga0208219_1149219	Not Available	509	Open in IMG/M
3300025862\|Ga0209483_1038681	Not Available	2311	Open in IMG/M
3300025899\|Ga0207642_10036291	Not Available	2114	Open in IMG/M
3300025912\|Ga0207707_10010679	All Organisms → cellular organisms → Bacteria → Proteobacteria	7979	Open in IMG/M
3300025913\|Ga0207695_10007912	All Organisms → cellular organisms → Bacteria	13415	Open in IMG/M
3300025934\|Ga0207686_10018283	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	3967	Open in IMG/M
3300025941\|Ga0207711_11357764	Not Available	653	Open in IMG/M
3300025942\|Ga0207689_10846113	Not Available	772	Open in IMG/M
3300026078\|Ga0207702_10166877	Not Available	2015	Open in IMG/M
3300026078\|Ga0207702_10614386	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1067	Open in IMG/M
3300027652\|Ga0209007_1138453	Not Available	607	Open in IMG/M
3300027826\|Ga0209060_10343450	Not Available	680	Open in IMG/M
3300027869\|Ga0209579_10020196	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	3769	Open in IMG/M
3300027869\|Ga0209579_10020196	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	3769	Open in IMG/M
3300027889\|Ga0209380_10611442	Not Available	631	Open in IMG/M
3300027889\|Ga0209380_10742621	Not Available	560	Open in IMG/M
3300028381\|Ga0268264_10548745	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1133	Open in IMG/M
3300028780\|Ga0302225_10450412	All Organisms → cellular organisms → Bacteria → Acidobacteria	603	Open in IMG/M
3300028780\|Ga0302225_10587309	Not Available	516	Open in IMG/M
3300028800\|Ga0265338_10128033	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	2011	Open in IMG/M
3300028800\|Ga0265338_10327188	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300029910\|Ga0311369_11012658	All Organisms → cellular organisms → Bacteria → Acidobacteria	655	Open in IMG/M
3300029999\|Ga0311339_10639767	All Organisms → cellular organisms → Bacteria → Acidobacteria	1051	Open in IMG/M
3300030007\|Ga0311338_10396109	Not Available	1484	Open in IMG/M
3300030053\|Ga0302177_10457147	All Organisms → cellular organisms → Bacteria → Acidobacteria	663	Open in IMG/M
3300030524\|Ga0311357_10576461	Not Available	1038	Open in IMG/M
3300031235\|Ga0265330_10361954	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	613	Open in IMG/M
3300031236\|Ga0302324_100010953	All Organisms → cellular organisms → Bacteria	18686	Open in IMG/M
3300031236\|Ga0302324_100146926	All Organisms → cellular organisms → Bacteria	3873	Open in IMG/M
3300031236\|Ga0302324_100223630	All Organisms → cellular organisms → Bacteria	2972	Open in IMG/M
3300031236\|Ga0302324_100223630	All Organisms → cellular organisms → Bacteria	2972	Open in IMG/M
3300031249\|Ga0265339_10379741	Not Available	662	Open in IMG/M
3300031525\|Ga0302326_12172834	Not Available	710	Open in IMG/M
3300031708\|Ga0310686_102922332	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1923	Open in IMG/M
3300031708\|Ga0310686_112141820	Not Available	729	Open in IMG/M
3300033513\|Ga0316628_104362240	Not Available	502	Open in IMG/M
3300034282\|Ga0370492_0344317	Not Available	605	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.05%
Host-Associated	Host-Associated	21.95%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.67%
Plants	Host-Associated → Plants	21.95%
Aquatic	Environmental → Aquatic	11.38%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.63%
Freshwater	Environmental → Aquatic → Freshwater	9.76%
Peat	Environmental → Terrestrial → Peat	9.76%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.69%
Sediment	Environmental → Aquatic → Sediment	1.63%
Roots	Host-Associated → Plants → Roots	1.63%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.89%
Loam	Environmental → Terrestrial → Soil → Loam	17.07%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.76%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	9.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.76%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.69%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.63%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.63%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.20%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	9.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.76%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.32%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.88%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.25%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.25%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.44%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.63%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.63%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.82%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	9.76%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	7.32%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.69%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	4.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	4.06%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.06%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.25%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	3.25%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.25%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	3.25%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.44%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.44%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.63%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.63%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.81%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.81%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.81%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014655	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300019240	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019258	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022713	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022721	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025625	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025862	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027652	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300031235	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG	Host-Associated	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031249	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG	Host-Associated	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070683_1002240123	3300005329	Corn Rhizosphere	MQKIVGMMILLAGASQFTMASTAPVPEIGVGSAGSALALISGAMLVIRGRRK*
Ga0070666_100034576	3300005335	Switchgrass Rhizosphere	MQKIVGMMILIAGASQFAMASTAPVPEIGVGSASSALALISGAMLVLRGRRK*
Ga0070708_1003102933	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MQKIVGMMILLAGASQFAMATAVPEIGVGSAGSAIALISGAMLVIRGRRK*
Ga0070681_100062737	3300005458	Corn Rhizosphere	MQKIVGMMILIAGASQFAMATAVPEIGVGSAGSAIALISGAMLVIRGRRK*
Ga0070734_101770752	3300005533	Surface Soil	MQKVLGMMILIATASQFAMATPVPEIGVGSAGSAIALISGALLVMRGRRK*
Ga0070734_103000912	3300005533	Surface Soil	MLRSTMFKTAGALLILAGVSSFAMANVTVPEIGAGSAGSALALLSGAILMIRGRKK*
Ga0070735_104613952	3300005534	Surface Soil	MQKVLGMMILLAGASQLAIASTTVPEIGVGSAGSAIALISGAMLVIRGRRK*
Ga0070731_100050875	3300005538	Surface Soil	MEKLLGMMFLLIGVSAVAMATVPEIGVGSAGSAIALLTGTLLVIRGRKK*
Ga0070731_100050876	3300005538	Surface Soil	VPKVLRMMFLVIGVSAVAMASPVPEIGVGSAGSAIALLSGVLLVMRGRKK*
Ga0070733_111862672	3300005541	Surface Soil	MQKVLGMLILIAGASQFAMATPVPEIGVGSAGSAIALISGAMLVIRGRRK*
Ga0070686_1011534561	3300005544	Switchgrass Rhizosphere	MQKIIGMMILIAGASQFAMASTAPVPEIGVGSASSALALISGAMLVLRGRRK*
Ga0070693_1002592494	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MQKIVGMMILIAGASQFAMASAVPEIGVGSAGSAIALISGAMLVIRGRRK*
Ga0070665_1004925072	3300005548	Switchgrass Rhizosphere	MQKILGMMILIAGASQFAMATAVPEIGVGSAGSAIALISGAMLVIRGRRK*
Ga0070761_101154261	3300005591	Soil	MQKVLGMMLLMVGASAFAMGTVAAVPEIGVGSAGSAIALLSGTLLVIRGRRRK*
Ga0070761_107440292	3300005591	Soil	MTKAVGLVLLFVGASSFALASVPEVTVGSAGSAVALLSGALLVIRGRRKK*
Ga0068856_1000077693	3300005614	Corn Rhizosphere	MQKVLGMMILLAGASHFAMASAVPEIGVGSAGSAIALISGAMLVIRGHRRK*
Ga0068856_1007808433	3300005614	Corn Rhizosphere	MQKIVGMMILLAGASQFTMASTAPVPEIGVGSASSALALISGAMLVLRGRRK*
Ga0070764_110348582	3300005712	Soil	ILGITLLVIGSSALAMGAVPEIGVGSAGSALALLSGTLLVFLGRKKKT*
Ga0070766_104304551	3300005921	Soil	IGGSMTKAVGLVLLFVGASSFALASVPEVTVGSAGSAVALLSGALLVIRGRRKK*
Ga0070766_107965082	3300005921	Soil	FRSVLFVEGNVSKILGITLLVIGSSALAMGAVPEIGVGSAGSALALLSGTLLVFLGRKKKT*
Ga0080027_102608862	3300005993	Prmafrost Soil	MTKVLGMMLLIVGAAHFAIGSNWTPVAAPEIGAGSAGSALALLSGALLVVRGRRK*
Ga0075029_1004100312	3300006052	Watersheds	MQKVLGMMLLIAGASQLAMASVPEIGAASAGSALALVSGALLVIRGRRK*
Ga0075017_1008833192	3300006059	Watersheds	MQKILGMMLLIAGASQLAMAVQTVPEIGAASAGSAIALISGAMLV
Ga0070765_1007329162	3300006176	Soil	MQKVLGMMLLIVGASAFAMGAVAAVPEIGVGSAGSAVALLSGTLLVIRGRRKK*
Ga0075522_100607842	3300006638	Arctic Peat Soil	MQKVLGMMILIAGASQFALATPVPEIGVGSAGSAIALISGAMLVIRGRRK*
Ga0075522_101147342	3300006638	Arctic Peat Soil	MQKVLGMVILLAGASQFAMASPVPEIGVGSAGSAIALISGAMLVIRGRRK*
Ga0105240_104238461	3300009093	Corn Rhizosphere	MQKVLGMMILLAGASHFAMASAVPEIGVGSAGSAIALISGAMLVIRG
Ga0105240_107068452	3300009093	Corn Rhizosphere	MQKVLGMRILLAGASHFAMASAVPEIGVGSAGSAIALISGAMLVIRGHRRK*
Ga0105241_100351242	3300009174	Corn Rhizosphere	MMILLAGASHFAMASAVPEIGVGSAGSAIALISGAMLVIRGRRRK*
Ga0105237_116432752	3300009545	Corn Rhizosphere	MSKLLGMMLLVAGTAHFAMATATPEIGVGSAGSALALVSGALLVIRGRRK*
Ga0105238_100125016	3300009551	Corn Rhizosphere	MQKVLGMMILLAGVSHFAMASAVPEIGVGSAGSAIALISGAMLVIRGRRRK*
Ga0105249_107761871	3300009553	Switchgrass Rhizosphere	MQKILGMMILIAGASQFAMATAVPEIGVGSAGSAIALISGAM
Ga0116134_10447762	3300009764	Peatland	MKKAVGLMLLLAGASSFAMAQSPSPEVGVGSAGSAIALLCGAVLVIRGRRKK*
Ga0116134_10447763	3300009764	Peatland	MTKAVGLMLLLVGAASFAMAAPPIAPEIGAGSAGSAIALLSGALLVIRGRRKK*
Ga0116134_10447764	3300009764	Peatland	MTKAVGMLLLLVGASSFAIAVNGGVPEIGVGSAGSAIALLSGALLVIRGRRKK*
Ga0134128_111140451	3300010373	Terrestrial Soil	MTEVFFGGKMAKVVGMLLLLAGVSSVAMAAVPEIGPGSAGSAIALLSGALLVYRGRRKQ*
Ga0134128_111140452	3300010373	Terrestrial Soil	MIKAVGMVLLLAGMASFASANAVPEIGPGSAGSAIALLSGALLVYRGRRKQ*
Ga0134128_111140453	3300010373	Terrestrial Soil	MTKAVGMFLLLAGAASFACAAPVPEIGPGSAGSAIALLSGALLVYRGRRKR*
Ga0134126_105545922	3300010396	Terrestrial Soil	MFLLLAGAASFACAAPVPEIGPGSAGSAIALLSGALLVYRGRRKR*
Ga0134126_123921642	3300010396	Terrestrial Soil	MTEVFFGGKMAKVVGMLLLLAGVSSVAMAAVPEIGPGSAGSAIALLSGALLVY
Ga0150983_105005531	3300011120	Forest Soil	SVLFVEGNVSKILGITLLVIGSSALAMGAVPEIGVGSAGSALALLSGTLLVFLGRKKKT*
Ga0150983_145260322	3300011120	Forest Soil	MRRVVGVLLLLVGAATFAVAQSAPEVSVGSAGSDIALLSGALLVIRGFRKK*
Ga0150983_145260323	3300011120	Forest Soil	GGSMTKAVGLVLLFVGASSFALAAVPEVGVGSAGSAIALLSGALLVIRGRRKK*
Ga0150983_147629773	3300011120	Forest Soil	MQKALGMMILLVGASNFAMAVAATPEIGAASAGSAIALISGALLVMRGRRKN*
Ga0150983_161232382	3300011120	Forest Soil	MTKALGMMLLLAGTASFAMAAPAVTPEVAVGSAGSGVALLSGVLLVVRGRRKK*
Ga0150983_161232383	3300011120	Forest Soil	MTKALGMMLLLAGTASFAMAAAVPEVGVGSAGSAIALVSGALLVMRGRRKK*
Ga0164308_120846212	3300012985	Soil	MQKIVGMMILIAGASQFAMASTAPVPEIGVGSASSALALISGAMLVLRGR
Ga0157374_103322982	3300013296	Miscanthus Rhizosphere	MQKILGMMILIAGASQLAMATVTVPEIGVGSAGSAIALISGAMLVIRGRRKY*
Ga0157378_132697971	3300013297	Miscanthus Rhizosphere	MQKIVGMMILIAGASQFAMASTAPVPEIGVGSASS
Ga0157372_108131072	3300013307	Corn Rhizosphere	MQKIVGMMILIAGASQFTMASTAPVPEIGVGSAGSALALISGAMLVIRGRRK*
Ga0181528_100483454	3300014167	Bog	LLLLAGTSTFAIAGLGAAPEIGAGSAGSAVALLAGTLLVIRGRRRK*
Ga0181534_101861271	3300014168	Bog	MLLLLAGTSTFAIAGLGAAPEIGAGSAGSAVALLAGTLLVIRGRRRK*
Ga0181537_100006145	3300014201	Bog	MQKLLGTLLLFVGASAFAMGAVPEISAGSAGSALALLSGTLLIIRGSRKNKA*
Ga0163163_1000500910	3300014325	Switchgrass Rhizosphere	MMILIAGASQFAMASTAPVPEIGVGSASSALALISGAMLVLRGRRK*
Ga0163163_100066921	3300014325	Switchgrass Rhizosphere	MKTIGMMLLLAGAANFAVGAVTVTPEISAGSAASAVTLLSGALLVIRGRRKKN*
Ga0182013_100346572	3300014492	Bog	MLLLLAGTSTFAIGGIGVAPEIGAGSAGSAVALLAGTLLVIRGRRRK*
Ga0181516_104431561	3300014655	Bog	EVMKNIQRALGLMLLVSAAASTAFATIATPEIAPGTAGSALALVSGLALMIRGRRK*
Ga0181522_101341763	3300014657	Bog	MQKLLGTLLLFVGASAFAMGAVPEISAGSAGSALALLSGTLLII
Ga0182030_1000703115	3300014838	Bog	MRKVLGMVLLLAGTSTFAIGGIGVAPEIGAGSAGSAVALLAGTLLVIRGRRRK*
Ga0182030_103855361	3300014838	Bog	MQKVFGLMLLIVGASAFAMGGVPEINAGSAGSAVVLISGALLVYRGRRK*
Ga0182030_103855362	3300014838	Bog	MQKMIGYALLVVGASGLAMAFSTPEINAGSAGSAVALISGALLVYRGRRK*
Ga0182030_103855363	3300014838	Bog	MQKIIGLALLVVGASAFAMALSTPEINAGSAGSAVALISGALLVYRGRRK*
Ga0182030_105202991	3300014838	Bog	MQKVLGMMILLAGASQFVMASAVPEIGVGSAGSAIALISGAMLVIRGRRK*
Ga0187783_105270402	3300017970	Tropical Peatland	VAKFAGFVLLIVGASSFAMAATIPEVGAASAGSAVALLSGALLVIRGRRKK
Ga0187867_101714431	3300018033	Peatland	MQKMIGYALLVVGASGLAMAFSTPEINAGSAGSAVALISGALLVYRGRRK
Ga0187867_101714432	3300018033	Peatland	MQKVFGLMLLIVGASAFAMGGVPEINAGSAGSAVVLISGALLVYRGRRK
Ga0187784_101701013	3300018062	Tropical Peatland	MQKIIGLMLLVVGSASFAQAVLAPEIDATSAGSAIALAAGMLLIYRGRRK
Ga0181510_14753081	3300019240	Peatland	GAFSLEKIMQKLLGTLLLFVGASAFAMGAVPEISAGSAGSALALLSGTLLIIRGSRKNKA
Ga0181504_13177361	3300019258	Peatland	DSGAFSLEKIMQKLLGTLLLFVGASAFAMGAVPEISAGSAGSALALLSGTLLIIRGSRKNKA
Ga0210406_107639021	3300021168	Soil	MNKALGMMLLLAGVSSLAMAATAAVPEIGVGSAGSAMALVSGALLVIRGRRK
Ga0210400_113395261	3300021170	Soil	MQKILGMMLLVAGASVFAMGASVPEISAGSAGSAVALLSGTLLIIRGRRKK
Ga0210400_113395262	3300021170	Soil	MRKVLGMMLLVAGASVIAMGGPSVPEISAGSAGSAVAMLSGALLILRGRRK
Ga0210388_103116743	3300021181	Soil	VEGNVSKILGITLLVIGSSALAMGAVPEIGVGSAGSALALLSGTLLVFLGRKKKT
Ga0210388_108102661	3300021181	Soil	MQKTLGMLLLIAGASQLAMASTTVPEIGAASAGSAIALISGAMLVIRGRRK
Ga0210383_112525162	3300021407	Soil	AFFVEGNVSKILGITLLVIGSSALAMGAVPEIGVGSAGSALALLSGTLLVFLGRKKKT
Ga0210394_104455781	3300021420	Soil	MQRLMGMMLLLAGASTFAMGAFTVPEIGAGSAGSAFALLSGTLLIIRGRRRK
Ga0210391_101678761	3300021433	Soil	ERAFFVEGNVSKILGITLLVIGSSALAMGAVPEIGVGSAGSALALLSGTLLVFLGRKKKT
Ga0210392_100169163	3300021475	Soil	MNKALGMMLLLAGVSSLAMAATAAVPEIGVGSAGSAMALVSGALLVIRGRRKK
Ga0210398_112242161	3300021477	Soil	MLKVTGMILLVVGTSTFAFGALVPEIGVGSAGSALALLSGALLVIRGRRKS
Ga0242662_103079261	3300022533	Soil	MTKLLGMMLLVAGTAHFAMATTPEISAGSAGSALALVSGALLVIRGRRK
Ga0242662_103079262	3300022533	Soil	MTKLLGMMLLVAGTAHFAMAVPTPEIGVGSAGSALALISGALLVIRGRRK
Ga0242677_10909601	3300022713	Soil	MTKTLGMLLLLIGASSFAMATVSPEIGAGSAGSALALLSGALLVIRGRRKK
Ga0242677_10909602	3300022713	Soil	MKKVFGFMLLLAGAASFAMATPPTPEVGVGSAGSAVALLSGALLVFRGRRK
Ga0242666_11917702	3300022721	Soil	GESTMKLVGMLLLLAGAACFALAETSAPEVGAGSAGSALALLSGALLVVRGRRKK
Ga0242657_11290212	3300022722	Soil	MTKAVGVLLLFVGASSFAMASGTPEVGAGSAGSAIALLSGALLVIRGRRKQ
Ga0242657_11290213	3300022722	Soil	MRRVVGVLLLLVGAATFAVAQSAPEVSVGSAGSDIALLSGALLVIRGFRKK
Ga0208219_11492191	3300025625	Arctic Peat Soil	ETVHLEELMQKILGMMILIAGASQFAMAVTAVPEIGAASAGSAIALISGAMLVIRGRRK
Ga0209483_10386812	3300025862	Arctic Peat Soil	MQKVLGMMILIAGASQFALATPVPEIGVGSAGSAIALISGAMLVIRGRRK
Ga0207642_100362913	3300025899	Miscanthus Rhizosphere	MQKIVGMMILLAGASQFTMASTAPVPEIGVGSAGSALALISGAMLVIRGRRK
Ga0207707_100106793	3300025912	Corn Rhizosphere	MQKIVGMMILIAGASQFAMATAVPEIGVGSAGSAIALISGAMLVIRGRRK
Ga0207695_100079126	3300025913	Corn Rhizosphere	MQKVLGMMILLAGASHFAMASAVPEIGVGSAGSAIALISGAMLVIRGHRRK
Ga0207686_100182832	3300025934	Miscanthus Rhizosphere	MQKILGMMILIAGASQFAMATAVPEIGVGSAGSAIALISGAMLVIRGRRK
Ga0207711_113577641	3300025941	Switchgrass Rhizosphere	MQKIVGMMILIAGASQFAMASTAPVPEIGVGSASSALALISG
Ga0207689_108461133	3300025942	Miscanthus Rhizosphere	MQKIVGMMILLAGASQFTMASTAPVPEIGVGSASSALALISGAMLVLRGRRK
Ga0207702_101668771	3300026078	Corn Rhizosphere	MQKVLGMMILLAGASHFAMASAVPEIGVGSAGSAIALISGAMLVIRGHRR
Ga0207702_106143861	3300026078	Corn Rhizosphere	YFKRFRWRNQMQKVLGMMILLAGASHFAMASAVPEIGVGSAGSAIALISGAMLVIRGHRR
Ga0209007_11384531	3300027652	Forest Soil	MQKVLGMMLLMVGASAFAMGTVAAVPEIGVGSAGSAIALLSGTLLVIRGRRRK
Ga0209060_103434502	3300027826	Surface Soil	MQKVLGMMILIATASQFAMATPVPEIGVGSAGSAIALISGALLVMRGRRK
Ga0209579_100201966	3300027869	Surface Soil	MEKLLGMMFLLIGVSAVAMATVPEIGVGSAGSAIALLTGTLLVIRGRKK
Ga0209579_100201967	3300027869	Surface Soil	VPKVLRMMFLVIGVSAVAMASPVPEIGVGSAGSAIALLSGVLLVMRGRKK
Ga0209380_106114421	3300027889	Soil	FRSVLFVEGNVSKILGITLLVIGSSALAMGAVPEIGVGSAGSALALLSGTLLVFLGRKKK
Ga0209380_107426211	3300027889	Soil	EISIGGSMTKAVGLVLLFVGASSFALASVPEVTVGSAGSAVALLSGALLVIRGRRKK
Ga0268264_105487452	3300028381	Switchgrass Rhizosphere	QTVYLEESMQKIVGMMILIAGASQFAMASTAPVPEIGVGSASSALALISGAMLVLRGRRK
Ga0302225_104504122	3300028780	Palsa	MQKVLGLMLLVIGASAFAMGAVSIVPEIGAGSAGSAVALLSGALLVIR
Ga0302225_105873092	3300028780	Palsa	MQKVLGMMLLVVGASAFAMGTVAAVPEIGVGSAGSAVALLSGTLLVIRGRRKK
Ga0265338_101280333	3300028800	Rhizosphere	MQKVLGIMLLIAGASQFATASAVPEIGVGSAGSAIALISGAMLVIRGHRR
Ga0265338_103271882	3300028800	Rhizosphere	MQKILGMMLLIAGASQLAMATPVPEIGAASAGSAIALISGAMLVIRGRRK
Ga0311369_110126581	3300029910	Palsa	MQKVLGLMLLVIGASAFAMGAVSIVPEIGAGSAGSAVALLSGALLVVRGRRKK
Ga0311339_106397672	3300029999	Palsa	MQKVFGMMLLVIGASTFAMATATVPEIGVGSAGSAVALLSGTLLVIRGRRKK
Ga0311338_103961091	3300030007	Palsa	MQKVLGMTLLLAGLAPFAMGVPTAPEIGVGSAGSALALLSGALLVIRGRRKQ
Ga0302177_104571472	3300030053	Palsa	MQKVLGLMLLVIGASAFAMGAVSIVPEIGAGSAGSAVALLSGALLVIRGRRKK
Ga0311357_105764612	3300030524	Palsa	GGTMQKVLGMMLLVVGASAFAMGTVAAVPEIGVGSAGSAVALLSGTLLVIRGRRKK
Ga0265330_103619541	3300031235	Rhizosphere	MQKILGMMLLIAGASQLAMATPVPEIGAASAGSAIALI
Ga0302324_1000109532	3300031236	Palsa	MLKGLGMVLLVVGASAFVMGVGRRAVPEIAAGSAGSAVALLSGTLLILRGSRKK
Ga0302324_1001469264	3300031236	Palsa	MLKLFGMMLLIVGASAFATGAVSVVPEIGVGSAGSAVALLSGTLLVIRGRRKR
Ga0302324_1002236305	3300031236	Palsa	MQKVLGMTLLLAGLAPFAMGVPTAPEIGVGSAGSALALLSGALLVIRSRRKQ
Ga0302324_1002236306	3300031236	Palsa	RPGLEIKLQKVLGMTLLLAGLAPFAMGVNVPEIGVGSAGSALALLSGALLVIRGRRKK
Ga0265339_103797412	3300031249	Rhizosphere	MQKVLGMVILIAGASQFAMASTVPEIGVGSAGSAIALISGAMLVIRGRRK
Ga0302326_121728341	3300031525	Palsa	MMLLVIGASTFAMATATVPEIGVGSAGSAVALLSGTLLVIRGRRKK
Ga0310686_1029223322	3300031708	Soil	MTKTVGLLLLFVGASSFALAATPEVGVGSAGSAIALLSGALLVIRGRRKK
Ga0310686_1121418201	3300031708	Soil	MQKVIGVMLLTIGASAFATAAVTVPEIGAGSAGSAVALLSGALLVIQGRRKK
Ga0316628_1043622401	3300033513	Soil	MQKILGMMILIASASQFAMAVTAVPEIGVGSAGSAIALISGAMLVMRGRRK
Ga0370492_0344317_344_487	3300034282	Untreated Peat Soil	MVLLLAGTSTFAIAGLGAAPEIGAGSAGSAVALLAGTLLVIRGRRRK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F070343

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences