NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F070277

Metagenome Family F070277

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F070277
Family Type Metagenome
Number of Sequences 123
Average Sequence Length 67 residues
Representative Sequence MRRTRLLSAIGVSLWSAVVAGSQVAAPVVLSPGLRAHVKDERFGIVTSIRGLPLGVRDGLQT
Number of Associated Samples 95
Number of Associated Scaffolds 123

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 69.67 %
% of genes near scaffold ends (potentially truncated) 99.19 %
% of genes from short scaffolds (< 2000 bps) 94.31 %
Associated GOLD sequencing projects 88
AlphaFold2 3D model prediction Yes
3D model pTM-score0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (86.992 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil
(16.260 % of family members)
Environment Ontology (ENVO) Unclassified
(29.268 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(48.780 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 37.78%    β-sheet: 0.00%    Coil/Unstructured: 62.22%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 123 Family Scaffolds
PF08031BBE 10.57
PF07995GSDH 4.07
PF02687FtsX 2.44
PF00873ACR_tran 1.63
PF07681DoxX 1.63
PF12796Ank_2 1.63
PF04229GrpB 1.63
PF02133Transp_cyt_pur 1.63
PF03405FA_desaturase_2 0.81
PF04998RNA_pol_Rpb1_5 0.81
PF00330Aconitase 0.81
PF07676PD40 0.81
PF01022HTH_5 0.81
PF10282Lactonase 0.81
PF01252Peptidase_A8 0.81
PF01872RibD_C 0.81
PF00753Lactamase_B 0.81
PF12704MacB_PCD 0.81
PF09594GT87 0.81
PF13502AsmA_2 0.81
PF00575S1 0.81
PF00326Peptidase_S9 0.81
PF07969Amidohydro_3 0.81
PF05163DinB 0.81
PF00111Fer2 0.81
PF13360PQQ_2 0.81
PF04191PEMT 0.81
PF08818DUF1801 0.81
PF02311AraC_binding 0.81
PF13620CarboxypepD_reg 0.81
PF09107SelB-wing_3 0.81
PF06267DUF1028 0.81
PF00903Glyoxalase 0.81
PF01436NHL 0.81
PF03174CHB_HEX_C 0.81
PF02627CMD 0.81

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 123 Family Scaffolds
COG0277FAD/FMN-containing lactate dehydrogenase/glycolate oxidaseEnergy production and conversion [C] 10.57
COG2133Glucose/arabinose dehydrogenase, beta-propeller foldCarbohydrate transport and metabolism [G] 4.07
COG0597Lipoprotein signal peptidaseCell wall/membrane/envelope biogenesis [M] 1.63
COG4270Uncharacterized membrane proteinFunction unknown [S] 1.63
COG2259Uncharacterized membrane protein YphA, DoxX/SURF4 familyFunction unknown [S] 1.63
COG2320GrpB domain, predicted nucleotidyltransferase, UPF0157 familyGeneral function prediction only [R] 1.63
COG5649Uncharacterized conserved protein, DUF1801 domainFunction unknown [S] 0.81
COG0086DNA-directed RNA polymerase, beta' subunit/160 kD subunitTranscription [K] 0.81
COG5646Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)Posttranslational modification, protein turnover, chaperones [O] 0.81
COG4430Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 familyFunction unknown [S] 0.81
COG3525N-acetyl-beta-hexosaminidaseCarbohydrate transport and metabolism [G] 0.81
COG3342Uncharacterized conserved protein, Ntn-hydrolase superfamilyGeneral function prediction only [R] 0.81
COG2318Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)Secondary metabolites biosynthesis, transport and catabolism [Q] 0.81
COG2128Alkylhydroperoxidase family enzyme, contains CxxC motifInorganic ion transport and metabolism [P] 0.81
COG1985Pyrimidine reductase, riboflavin biosynthesisCoenzyme transport and metabolism [H] 0.81
COG0599Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase familyGeneral function prediction only [R] 0.81
COG0262Dihydrofolate reductaseCoenzyme transport and metabolism [H] 0.81

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms86.99 %
UnclassifiedrootN/A13.01 %

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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2228664021|ICCgaii200_c0435860All Organisms → cellular organisms → Bacteria → Acidobacteria575Open in IMG/M
3300000956|JGI10216J12902_101947398All Organisms → cellular organisms → Bacteria2714Open in IMG/M
3300000956|JGI10216J12902_115649386All Organisms → cellular organisms → Bacteria → Acidobacteria552Open in IMG/M
3300001139|JGI10220J13317_11726569All Organisms → cellular organisms → Bacteria → Acidobacteria719Open in IMG/M
3300001990|JGI24737J22298_10258486All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300002128|JGI24036J26619_10075362All Organisms → cellular organisms → Bacteria673Open in IMG/M
3300003993|Ga0055468_10106717Not Available795Open in IMG/M
3300004114|Ga0062593_101737647All Organisms → cellular organisms → Bacteria683Open in IMG/M
3300004156|Ga0062589_100206178Not Available1425Open in IMG/M
3300004480|Ga0062592_101117467Not Available730Open in IMG/M
3300004480|Ga0062592_101469912All Organisms → cellular organisms → Bacteria652Open in IMG/M
3300004480|Ga0062592_101519194All Organisms → cellular organisms → Bacteria → Acidobacteria643Open in IMG/M
3300004480|Ga0062592_102714880Not Available501Open in IMG/M
3300004643|Ga0062591_100518758All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1029Open in IMG/M
3300004643|Ga0062591_101623877All Organisms → cellular organisms → Bacteria → Acidobacteria652Open in IMG/M
3300005093|Ga0062594_102319371All Organisms → cellular organisms → Bacteria → Acidobacteria584Open in IMG/M
3300005294|Ga0065705_10915704All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium571Open in IMG/M
3300005294|Ga0065705_10934551All Organisms → cellular organisms → Bacteria565Open in IMG/M
3300005328|Ga0070676_10184590All Organisms → cellular organisms → Bacteria → Acidobacteria1358Open in IMG/M
3300005328|Ga0070676_10875454All Organisms → cellular organisms → Bacteria667Open in IMG/M
3300005331|Ga0070670_100494533All Organisms → cellular organisms → Bacteria1087Open in IMG/M
3300005333|Ga0070677_10768181All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium548Open in IMG/M
3300005334|Ga0068869_101734399All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300005335|Ga0070666_10335869All Organisms → cellular organisms → Bacteria1079Open in IMG/M
3300005340|Ga0070689_101204944All Organisms → cellular organisms → Bacteria680Open in IMG/M
3300005353|Ga0070669_100383199All Organisms → cellular organisms → Bacteria → Acidobacteria1147Open in IMG/M
3300005364|Ga0070673_101341086Not Available672Open in IMG/M
3300005367|Ga0070667_100856194All Organisms → cellular organisms → Bacteria → Acidobacteria845Open in IMG/M
3300005441|Ga0070700_101088147All Organisms → cellular organisms → Bacteria662Open in IMG/M
3300005456|Ga0070678_100326994All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter1311Open in IMG/M
3300005471|Ga0070698_100040115All Organisms → cellular organisms → Bacteria4814Open in IMG/M
3300005518|Ga0070699_101724229All Organisms → cellular organisms → Bacteria → Acidobacteria574Open in IMG/M
3300005543|Ga0070672_101926206All Organisms → cellular organisms → Bacteria → Proteobacteria532Open in IMG/M
3300005577|Ga0068857_100858632All Organisms → cellular organisms → Bacteria869Open in IMG/M
3300005618|Ga0068864_100702504All Organisms → cellular organisms → Bacteria988Open in IMG/M
3300006046|Ga0066652_102008871All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300006196|Ga0075422_10551346All Organisms → cellular organisms → Bacteria → Acidobacteria529Open in IMG/M
3300006845|Ga0075421_102310725Not Available565Open in IMG/M
3300006845|Ga0075421_102541324All Organisms → cellular organisms → Bacteria533Open in IMG/M
3300006847|Ga0075431_101131688All Organisms → cellular organisms → Bacteria → Acidobacteria747Open in IMG/M
3300006847|Ga0075431_101928998Not Available546Open in IMG/M
3300006865|Ga0073934_10644075Not Available616Open in IMG/M
3300006876|Ga0079217_11374166Not Available550Open in IMG/M
3300006881|Ga0068865_102021646All Organisms → cellular organisms → Bacteria → Acidobacteria523Open in IMG/M
3300006894|Ga0079215_10415946All Organisms → cellular organisms → Bacteria → Proteobacteria801Open in IMG/M
3300006904|Ga0075424_100460482All Organisms → cellular organisms → Bacteria1357Open in IMG/M
3300006904|Ga0075424_102324454All Organisms → cellular organisms → Bacteria563Open in IMG/M
3300007004|Ga0079218_12106783All Organisms → cellular organisms → Bacteria → Acidobacteria650Open in IMG/M
3300009094|Ga0111539_12792858All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium566Open in IMG/M
3300009147|Ga0114129_11647856All Organisms → cellular organisms → Bacteria784Open in IMG/M
3300009147|Ga0114129_12244077All Organisms → cellular organisms → Bacteria → Acidobacteria656Open in IMG/M
3300009147|Ga0114129_13116108All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300009156|Ga0111538_11337279All Organisms → cellular organisms → Bacteria → Acidobacteria904Open in IMG/M
3300009174|Ga0105241_12017762All Organisms → cellular organisms → Bacteria568Open in IMG/M
3300009597|Ga0105259_1187022All Organisms → cellular organisms → Bacteria → Acidobacteria505Open in IMG/M
3300009609|Ga0105347_1229005All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium757Open in IMG/M
3300010403|Ga0134123_13420924All Organisms → cellular organisms → Bacteria → Acidobacteria513Open in IMG/M
3300011436|Ga0137458_1026341All Organisms → cellular organisms → Bacteria → Acidobacteria1462Open in IMG/M
3300012226|Ga0137447_1084784All Organisms → cellular organisms → Bacteria → Acidobacteria618Open in IMG/M
3300012909|Ga0157290_10457843All Organisms → cellular organisms → Bacteria → Acidobacteria511Open in IMG/M
3300012955|Ga0164298_10909354Not Available641Open in IMG/M
3300015372|Ga0132256_101620133All Organisms → cellular organisms → Bacteria → Acidobacteria757Open in IMG/M
3300015373|Ga0132257_102313544All Organisms → cellular organisms → Bacteria → Acidobacteria696Open in IMG/M
3300015374|Ga0132255_102077324All Organisms → cellular organisms → Bacteria865Open in IMG/M
3300017789|Ga0136617_10229189All Organisms → cellular organisms → Bacteria → Acidobacteria1555Open in IMG/M
3300018072|Ga0184635_10277759Not Available661Open in IMG/M
3300018075|Ga0184632_10462161All Organisms → cellular organisms → Bacteria → Acidobacteria525Open in IMG/M
3300018422|Ga0190265_11786938Not Available723Open in IMG/M
3300018422|Ga0190265_12319657All Organisms → cellular organisms → Bacteria → Acidobacteria638Open in IMG/M
3300018429|Ga0190272_11277902Not Available728Open in IMG/M
3300018429|Ga0190272_13359835All Organisms → cellular organisms → Bacteria500Open in IMG/M
3300018469|Ga0190270_10872038All Organisms → cellular organisms → Bacteria → Proteobacteria915Open in IMG/M
3300018469|Ga0190270_12341673All Organisms → cellular organisms → Bacteria → Acidobacteria595Open in IMG/M
3300018476|Ga0190274_11274824All Organisms → cellular organisms → Bacteria821Open in IMG/M
3300018481|Ga0190271_10178954All Organisms → cellular organisms → Bacteria2085Open in IMG/M
3300018481|Ga0190271_12801517All Organisms → cellular organisms → Bacteria585Open in IMG/M
3300018481|Ga0190271_12852312All Organisms → cellular organisms → Bacteria → Acidobacteria580Open in IMG/M
3300018481|Ga0190271_13076882All Organisms → cellular organisms → Bacteria → Acidobacteria559Open in IMG/M
3300018481|Ga0190271_13193645All Organisms → cellular organisms → Bacteria549Open in IMG/M
3300019377|Ga0190264_10409594All Organisms → cellular organisms → Bacteria883Open in IMG/M
3300019377|Ga0190264_10814188All Organisms → cellular organisms → Bacteria → Acidobacteria713Open in IMG/M
3300019889|Ga0193743_1107134All Organisms → cellular organisms → Bacteria → Acidobacteria1036Open in IMG/M
3300020020|Ga0193738_1186425All Organisms → cellular organisms → Bacteria → Acidobacteria524Open in IMG/M
3300022214|Ga0224505_10097538All Organisms → cellular organisms → Bacteria1157Open in IMG/M
3300023067|Ga0247743_1074986All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia cenocepacia516Open in IMG/M
3300025903|Ga0207680_10434892All Organisms → cellular organisms → Bacteria930Open in IMG/M
3300025907|Ga0207645_10085186All Organisms → cellular organisms → Bacteria → Acidobacteria2029Open in IMG/M
3300025925|Ga0207650_10289100All Organisms → cellular organisms → Bacteria1336Open in IMG/M
3300025961|Ga0207712_11735242All Organisms → cellular organisms → Bacteria → Acidobacteria560Open in IMG/M
3300027717|Ga0209998_10127372All Organisms → cellular organisms → Bacteria → Acidobacteria645Open in IMG/M
3300027886|Ga0209486_10084836All Organisms → cellular organisms → Bacteria → Acidobacteria1653Open in IMG/M
3300027907|Ga0207428_10713579All Organisms → cellular organisms → Bacteria → Acidobacteria716Open in IMG/M
3300027907|Ga0207428_11242775Not Available517Open in IMG/M
3300027909|Ga0209382_10570507All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas1236Open in IMG/M
(restricted) 3300028043|Ga0233417_10493253All Organisms → cellular organisms → Bacteria → Acidobacteria574Open in IMG/M
3300028809|Ga0247824_10217663All Organisms → cellular organisms → Bacteria1050Open in IMG/M
3300028812|Ga0247825_10012430All Organisms → cellular organisms → Bacteria5570Open in IMG/M
3300028812|Ga0247825_11270195All Organisms → cellular organisms → Bacteria → Acidobacteria538Open in IMG/M
3300028812|Ga0247825_11429463All Organisms → cellular organisms → Bacteria507Open in IMG/M
3300031184|Ga0307499_10012487All Organisms → cellular organisms → Bacteria1729Open in IMG/M
3300031538|Ga0310888_10950046All Organisms → cellular organisms → Bacteria → Acidobacteria538Open in IMG/M
3300031547|Ga0310887_10896529All Organisms → cellular organisms → Bacteria561Open in IMG/M
3300031548|Ga0307408_102134342All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium540Open in IMG/M
3300031562|Ga0310886_10224963All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1037Open in IMG/M
3300031562|Ga0310886_11128247All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Handelsmanbacteria → Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10507Open in IMG/M
3300031847|Ga0310907_10564515All Organisms → cellular organisms → Bacteria616Open in IMG/M
3300031854|Ga0310904_10550914All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21781Open in IMG/M
3300031944|Ga0310884_10933827All Organisms → cellular organisms → Bacteria → Acidobacteria536Open in IMG/M
3300032002|Ga0307416_101048553All Organisms → cellular organisms → Bacteria → Acidobacteria919Open in IMG/M
3300032012|Ga0310902_10371486All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium902Open in IMG/M
3300032012|Ga0310902_11363474All Organisms → cellular organisms → Bacteria → Acidobacteria504Open in IMG/M
3300032017|Ga0310899_10470057All Organisms → cellular organisms → Bacteria613Open in IMG/M
3300032075|Ga0310890_10071262Not Available2074Open in IMG/M
3300032075|Ga0310890_10498790All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21925Open in IMG/M
3300032075|Ga0310890_11130838All Organisms → cellular organisms → Bacteria → Acidobacteria635Open in IMG/M
3300032122|Ga0310895_10129550All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1066Open in IMG/M
3300032211|Ga0310896_10620563All Organisms → cellular organisms → Bacteria → Acidobacteria605Open in IMG/M
3300032421|Ga0310812_10203093All Organisms → cellular organisms → Bacteria → Proteobacteria860Open in IMG/M
3300033408|Ga0316605_10951529All Organisms → cellular organisms → Bacteria → Acidobacteria823Open in IMG/M
3300033419|Ga0316601_100607985All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1063Open in IMG/M
3300033551|Ga0247830_10342309All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1154Open in IMG/M
3300034149|Ga0364929_0227815All Organisms → cellular organisms → Bacteria → Acidobacteria622Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil16.26%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil16.26%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere12.20%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil7.32%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere5.69%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.06%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere4.06%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil3.25%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil3.25%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.44%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.44%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.63%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere1.63%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.63%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.63%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.63%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.63%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.81%
Polar Desert SandEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand0.81%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.81%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment0.81%
Hot Spring SedimentEnvironmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment0.81%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.81%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.81%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.81%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.81%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.81%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.81%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.81%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.81%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.81%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.81%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2228664021Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300001139Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soilEnvironmentalOpen in IMG/M
3300001990Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3Host-AssociatedOpen in IMG/M
3300002128Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5EnvironmentalOpen in IMG/M
3300003993Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005333Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaGHost-AssociatedOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006196Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1Host-AssociatedOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006865Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaGEnvironmentalOpen in IMG/M
3300006876Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200EnvironmentalOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006894Agricultural soil microbial communities from Utah to study Nitrogen management - NC ControlEnvironmentalOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009597Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299EnvironmentalOpen in IMG/M
3300009609Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011436Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT642_2EnvironmentalOpen in IMG/M
3300012226Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT400_2EnvironmentalOpen in IMG/M
3300012909Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1EnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017789Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)EnvironmentalOpen in IMG/M
3300018072Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2EnvironmentalOpen in IMG/M
3300018075Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1EnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018429Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 TEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300019377Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 TEnvironmentalOpen in IMG/M
3300019889Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2EnvironmentalOpen in IMG/M
3300020020Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1EnvironmentalOpen in IMG/M
3300022214Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_4_1EnvironmentalOpen in IMG/M
3300023067Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S221-509R-5EnvironmentalOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300027717Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027886Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)EnvironmentalOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028043 (restricted)Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0.5_MGEnvironmentalOpen in IMG/M
3300028809Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48EnvironmentalOpen in IMG/M
3300028812Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48EnvironmentalOpen in IMG/M
3300031184Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_SEnvironmentalOpen in IMG/M
3300031538Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1EnvironmentalOpen in IMG/M
3300031547Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4EnvironmentalOpen in IMG/M
3300031548Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3Host-AssociatedOpen in IMG/M
3300031562Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3EnvironmentalOpen in IMG/M
3300031847Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4EnvironmentalOpen in IMG/M
3300031854Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1EnvironmentalOpen in IMG/M
3300031944Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1EnvironmentalOpen in IMG/M
3300032002Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3Host-AssociatedOpen in IMG/M
3300032012Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3EnvironmentalOpen in IMG/M
3300032017Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032122Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4EnvironmentalOpen in IMG/M
3300032211Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1EnvironmentalOpen in IMG/M
3300032421Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3EnvironmentalOpen in IMG/M
3300033408Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCTEnvironmentalOpen in IMG/M
3300033419Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCTEnvironmentalOpen in IMG/M
3300033551Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5EnvironmentalOpen in IMG/M
3300034149Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
ICCgaii200_043586022228664021SoilMKSRVLSLLGAVGLSVWSCGGVAGQTPTPAALPGALRDHMKDERFDIVTSIRGLPLGVRDGLQTLFGSDSLDIG
JGI10216J12902_10194739853300000956SoilMIEYRGCRTRLLYAIGASLCGVVLASGQAAPPTALSAALRARVKDERFEIVTSIRGLPLGVRDELETLFGSS
JGI10216J12902_11564938613300000956SoilMTIPTVWMRLLCAIGVSLCSVVIVTSQSVQPEALSAALRDRVKEGRFQVVTSIRGLPLGVRGALQTLFG
JGI10220J13317_1172656923300001139SoilMDTVYAKNTRVWMRNRRILFLCAISVSLWSGVVVGSQAAAPVTLSGALRDHVKDDRFGIVTSIRGLPLGVRDELQTLF
JGI24737J22298_1025848623300001990Corn RhizosphereMRNTRLFFLCAIGVSLWSAVGAGSQAAAPTALSGALRDRVKDERFGIVTSIRGLPLGVRDELQTLFGSQTLDIADPGG
JGI24036J26619_1007536223300002128Corn, Switchgrass And Miscanthus RhizosphereMRNTRLFFLCAIGVSLWSAVGAGSQAAAPTALSGALRDRVKDERFGIVTSIRGLPLGVR
Ga0055468_1010671723300003993Natural And Restored WetlandsMRRTRLLCAIGLSLWSAVVAGSQAVAPAELPGALRDHVKNDRFGLVTSIRGLPLGVRNELQTMFGS
Ga0062593_10173764713300004114SoilMRPLCTIAAILGSTAVIGSQAAPAAALSEAQRAHLKADRFQIVTSIRGLPLGVRDGLQALFAGVSLD
Ga0062589_10020617823300004156SoilMIEYRGCRTRLLYAIGASLCGVVLASGQAAPPTALTAALRARVKDERFEIVTSIRGLPLGVRDELE
Ga0062592_10111746713300004480SoilMDRTRLVYAIVVSLCSVVVACNQPLRPIPLSDALRAHVKDERFQTVTSIRGLPLGVLYGLENLFGNQT
Ga0062592_10146991213300004480SoilMYRTRLLCALGVGFWSAVVAGSQAPPPVALSGELRAHVQDERFQVSTSIRGLPLGVRAGLQTLFGSQEL
Ga0062592_10151919413300004480SoilMRCTQLLCAIGVGMCSAGVAGDQEPAAGALTGALRTHVAEERFDVVTSIRGLPLGVRDGLQAL
Ga0062592_10271488023300004480SoilMRGTRILCAMFVAAWSAVIGGSQAAAPVVLPAALQVHVKGEQFQIVTSIRGLPLGV
Ga0062591_10051875813300004643SoilMHRTRLLLCAIGVSLWPAIACGQTAAPAELPATLRAHLKEERLGIVTSIRGLPLGV
Ga0062591_10162387723300004643SoilMQLLVLFGILAPMRPTHLLSAVGVSLWLATVPGNQAASPTALSDALRAHVKDERFAIVTSIRGLPLGVREELQTLFGSQSLDI
Ga0062594_10231937113300005093SoilMRHTQLLCAIAVSLWSAVAAGSQAVPGALSGALRNYVKDGRFGIVTSIRGLPLGVRH
Ga0065705_1091570423300005294Switchgrass RhizosphereVTASAKLSGAIIVSLWAAVVVGGQAVPPPALSAALRAHVKDERFQIVTSIRGLPLGVRDELQTLFGSQTLDIADPGA
Ga0065705_1093455123300005294Switchgrass RhizosphereMPHTRLLCAIGVSLCSAVVAGSQAVPPAALSEALRDHVKNGRFQIVTSIRGLPLGVRNEL
Ga0070676_1018459023300005328Miscanthus RhizosphereMRNTRLFFLCAIGVSLWSAVGAGSQAAAPTALSGALRDRVKDERFGIVTSIRGLPLGVRDELQTLFGSQTLDIADPGGAFQVTDAIVDPKLPT
Ga0070676_1087545413300005328Miscanthus RhizosphereMHRTRLLCTIAVSFWSAVIAASQAVPSVALSGAMRAHVEGERFQIVTSIRGLPLGVRDALQMLFGSQSLDI
Ga0070670_10049453313300005331Switchgrass RhizosphereMRNTRLFFLCAIGVSLWSAVGAGSQAAAPTALSGALRDRVKDERFGIVTSIRGLPLGVRDELQTLFGSQTLDIAD
Ga0070677_1076818113300005333Miscanthus RhizosphereMRHTRLFCAIGLSLSSAVITGSQATPAASLSESLRAHVKDERFQIVTSIRGLPLGVR
Ga0068869_10173439923300005334Miscanthus RhizosphereMRRTRLFCAFGVSLWSAAVTGSQAAPSTVLSEALRAHVKAERFQIVTSVRGLPLGV
Ga0070666_1033586913300005335Switchgrass RhizosphereMYRVWMRRTRLFCAIGVSLWSAAVTGSQAAPSSALSEALRAHVKAERFQIVTSVRG
Ga0070689_10120494413300005340Switchgrass RhizosphereMRPLCTIAAILGSTAVIGSQAAPAAALSEAQRAHLKADRFQIVTSIRGLPLGVRDGLQALFAGVS
Ga0070669_10038319913300005353Switchgrass RhizosphereMRHTRLLCALAVSLWLAVVAGSQVAPGALSGALRDYVRDGRFGLVTSIRGLPLG
Ga0070673_10134108613300005364Switchgrass RhizosphereMDRTRLVYAIVVSLCSVVVACNQPLRPIPLSDALRAHVKDERFQTVTSIRGLPLGVLY
Ga0070667_10085619423300005367Switchgrass RhizosphereMRNTRLFFLCAIGVSLWSAVGAGSQAAAPTALSGALRDRVKDERFGIVTSIRGLPLGVRDELQTLFGSQTLDIADPGGAFQVTDAIVDPKLP
Ga0070700_10108814713300005441Corn, Switchgrass And Miscanthus RhizosphereMRNTRLLFLCAVVVSLWSAVVSGSQAAAPTAPSAALRDHVKDDRFGIVTSIRGLPLGVRDELQRLFGSQTLDIADPGAEFQLTDAIA
Ga0070678_10032699423300005456Miscanthus RhizosphereMFKMRCAQSVCVIGLCLWTAVVIGRQAAPPAALSDALRTHLKNEQFYIVTSIRGLPLGVRGE
Ga0070698_10004011513300005471Corn, Switchgrass And Miscanthus RhizosphereMRRTRLLSAIGVSLWSAVVAGSQVAAPVVLSPGLRAHVKDERFGIVTSIRGLPLGVRDGLQT
Ga0070699_10172422923300005518Corn, Switchgrass And Miscanthus RhizosphereMRCTRLLCAIGVSLWAAVVAGNQAAPPVALSGALRAHAKDERFEIVTSIRGLPLGVRDGLQTLFGSQA
Ga0070672_10192620613300005543Miscanthus RhizosphereVRLLCAIGVSLWSAVVIGNQSTPPAVLSGALRSHVADERFGIVTSIRGLPLGVRDA
Ga0068857_10085863223300005577Corn RhizosphereMRRTRLFCAIGVSLWSAAVTGSQAAPSSALSEALRAHVKAERFQIVTSVRGLPLG
Ga0068864_10070250423300005618Switchgrass RhizosphereMRNTRLLFLCAVVVSLWSAVVSGSQAAAPTAPSAALRDHVKDDRFGIVTSIRGLPLGVRDELQRLFGSQTLDIADPGAEFQLTDAIADPK
Ga0066652_10200887123300006046SoilMLRTRLLCAIGVSLWSAVIAGSQAVPPVAMSGALRDHVKDDRFQIVTSIRGLPLGVRGGLQTLFGSQTLD
Ga0075422_1055134623300006196Populus RhizosphereMSLWSAVVAGSQAGAPAALSEALRDHVKNDRFGIVTSIRGLPLGVRNKLQELFGGQNTLEIDIAEPGAEFQV
Ga0075421_10231072523300006845Populus RhizosphereMCHTRLLYAIGVSLWAAVVAGSQAVPPIAPSEALQAHLTNERFGIVTSIRGLPLGV
Ga0075421_10254132423300006845Populus RhizosphereMRSGLRLRSNPLCAIGLSLWSAVAAASQTAPPNALSATLRSHVKSERFDVVTSIRGLPL
Ga0075431_10113168813300006847Populus RhizosphereMRRTQLLCAIGVSFWSAMAAGSQATDADALSGTLRTHVQDERFGIVTSIRGLPLGVR
Ga0075431_10192899813300006847Populus RhizosphereVYGLEVRRTRFLCAIGVSVWLAVIAGNQAPAPVALSAALRAHLKDERFEIVTSIRGLPLG
Ga0073934_1064407513300006865Hot Spring SedimentMRMCCAVGVSLWSAAVAANQTAPAAVMSEALRAHVKAERFSIVSSIRGLPLGVREEL
Ga0079217_1137416613300006876Agricultural SoilMRRTRVLSAIGGCVWSAVIAGSQAAAPIELSPGFRDHVKTERFGIVTSVR
Ga0068865_10202164623300006881Miscanthus RhizosphereMRHTRLLCALAVSLWLAVVAGSQVAPGALSGALRDYVRDGRFGLVTSIRGLPLGVRHELQTMFGS
Ga0079215_1041594623300006894Agricultural SoilMRGLRLLCAIGVGFWSAVVAGSQAAPPVNLSGELRAHVQAERFQLVTSLRGLPLGVRAALQTLFGSPGLDIADPGEAFQASGASVNANPPIRRM
Ga0075424_10046048233300006904Populus RhizosphereMRNTRLLVLCAVGVSLWSAAVAGSQAAAPITLSRALRDHVKDDRFGIVTSIRGLPLGV
Ga0075424_10232445413300006904Populus RhizosphereMRRTRFLCALFVAFCPAVIVGSQAAAPVVLPAALQSHIKDEQFQIVTSIRGLPLG
Ga0079218_1210678313300007004Agricultural SoilMRRIRLFCAIGVSLWSVVIAGNQAAPAVILPDALRVHLKDERFAIVTSIRGLPLGVRNELQTLWSSKTLDIADPGAE
Ga0111539_1279285823300009094Populus RhizosphereVTQQLRRISQLSRFWMYRTRVLSAIVVSLWSVVVVGSQAVPPMALSETVRGHVKDARFQIVTSVRGLPLGV
Ga0114129_1164785623300009147Populus RhizosphereMHRTRLLLCAIGVSLWPAIACGQSAASAELPATLRAHLKEERLGIVTSIRGLPLGVRDELQTLFGNQLQ
Ga0114129_1224407723300009147Populus RhizosphereMRRIRLFCAIGVGYGSAVIAGSQAAPPIALPGELRTHVRDERFGIVTSIRGLPLGVRSGL
Ga0114129_1311610823300009147Populus RhizosphereMRNTRLFFLCAIGVSLWSAVGAGSQAAAPTALSGALRDRVKDERFGIVTSIRGLPLGVRDELQTLFGSQTLDIADPG
Ga0111538_1133727913300009156Populus RhizosphereVRHLLFLSAIGVSLWSVMAAGSQATGASALSGALRAHVQDERFGIVTSIRGLPLGVR
Ga0105241_1201776223300009174Corn RhizosphereMRRTRLLFAIGLSLWSAVVACSQEALPSVALSGVRRAHVEDERFEIVTSIRGLPLGVREWLQMLFGSPTLDIA
Ga0105259_118702213300009597SoilMRRTRLLCAIGVGLWSAVIAGSQAAAPVELSQELQAHVKDERFGIVTSIRGLPLGVRDMLQTL
Ga0105347_122900533300009609SoilSLWSAVATGSQAAPSVALDEALKAHLKSERLEMVTSIRGLPLGVRDELQTLFGGRLDMA*
Ga0134123_1342092423300010403Terrestrial SoilMLPEAWMRRTQLLCVIGVIVLSAMAAGSQVTNAGALSGALRAHVQDERFGIVTSIRGLPLGVRDAL
Ga0137458_102634123300011436SoilMRCTRLFFAIGVSLWSAVVIGSQAAPTGALSQELRAHVTDDRFQIVTSIRGLPLGVR
Ga0137447_108478413300012226SoilMRRTRLLCAIGVSFWSAVVAGSQAAVPVVLSGALQAHVKDERFGIVTSIRGLPLGVRDGLQTLFGSQAL
Ga0157290_1045784323300012909SoilMRCTQLLCAIGVGMCSAGVAGDQEPAAGALTGALRTHVAEERFDVVTSIRGLPLGVRDGLQALFGSG
Ga0164298_1090935423300012955SoilMRRTRLFCAIGVSLCSALVTGSQAAPTVALSEALRDHVKNERLEIVTSIRGLPLGVR
Ga0132256_10162013313300015372Arabidopsis RhizosphereMLRTRLFCAIGLSLCSAVCAAGQTAPGAALSSALRDHLKAERLDMVTSIRGLPLGVRDALQALFGSQT
Ga0132257_10231354433300015373Arabidopsis RhizosphereMRHTRLLCALAVSLWLAVVAGSQVAAGALSGALRDYVRDGRFGLVTSIRGL
Ga0132255_10207732433300015374Arabidopsis RhizosphereMSPESVFWTHRTAVLCVIAVSAWWAVIAGSQSAPPVALPASLRSHIQTERFDIVTSIRGLPLGVRDGLQTLFGSQTLEIAEPGTPFQVTDVMTNP
Ga0136617_1022918913300017789Polar Desert SandMIRLVHRTRLLRAIGVSLCSVVVAGRQAAPEAALSGELRTHVHDERFGIVTSIRGLPLGVRDGLQT
Ga0184635_1027775923300018072Groundwater SedimentMRRTQLFCAIGVSLLSTVVSGQTAPAALSEALRAHLKDEQFSIVTSIRGL
Ga0184632_1046216113300018075Groundwater SedimentMLTARRPWMGLGCLLCAIGLSVWSAVPATSQTAVPAALSGTLRDHVKDERFEVVTSIRGLPLGVRDGLQTLFGSQ
Ga0190265_1178693823300018422SoilMGVDASHTMFCAIAVSLCSLVVAGSQTPGPVVLSGTLRAHVKDERFDTITSIRGLPLGVRDELQRLFGG
Ga0190265_1231965723300018422SoilMRRTRLLCAIGVGLCVAVVAGNQAAPPGALSGALRAHVNDERFGIVTSIRGLPLGVRDGLQTLFGSQG
Ga0190272_1127790213300018429SoilMKEAKLAVVSMRRTRVLVLCAIGLSVWSAVAAGGQVAPPMALSGALRAQLKGARFGIVTSIRGLPLG
Ga0190272_1335983523300018429SoilMTRLLCMIGVSVWSVVAAAGQAAAPVVLPAELRAHLKSEPFGIVTSIRGLPLGVRDRLQALF
Ga0190270_1087203833300018469SoilMSHTKFLFAIGVSFCAVALVGSQAAAPAALSGALRDHVKAGPFQIVTAVRGLPIGVRDGLQKLFGS
Ga0190270_1234167323300018469SoilMRHDVMRPTQLLSAIGVSLWSVMAAGSQARDADTLSGALRAHVQDERFGIVTSIRGLPLGVRDGLQTLFGSRELDMGDPG
Ga0190274_1127482413300018476SoilMRRTRFLFAIGVSLCSAVIVGSQTVPPVALPGALRGHVKDERFQMVTSIRGLPLGVRGGLQTLFGSQ
Ga0190271_1017895453300018481SoilMHHTRLLSAIGVSLLLAVVAGSQAVAPKELSAELRDHVKSGRFGIVTSIRGLPLGVRAELQKLFGSKTLDIAESGAEFQLSDVVIDPDIPIRRLVAA
Ga0190271_1280151713300018481SoilMRPTRLFCAIGVSLWSVVAIGSQTAPSVALDEELRAHLKSERLEMVTSIRGLPLGVRDELQTLFGGRL
Ga0190271_1285231223300018481SoilMRRTQLFCAIGVSLWSVVTCSQAAPPVPLSEALRAHVKDERFQIVTSIRGLPLGVRDRLQTLF
Ga0190271_1307688223300018481SoilMHHIRLLCAIGVSLWAAARAGSQAPADALSGALRAHVKDERFGIVTSIRGLPLGVRDELQTLFGSPSL
Ga0190271_1319364523300018481SoilMPRTRLLLCTMGVGLSSAMVVAFQAAPPVALTSELRAHLKGDRFEIVTSIRGLPLGVRDGLQALFAS
Ga0190264_1040959423300019377SoilMRRTRVLSAISGCLWSAVIAGSQTATPIELSPGLRAHLKTERFGIVTSIRGLPLGVRDML
Ga0190264_1081418823300019377SoilMRHTRILCAIGVSVWSAVAAGNQMASPMTLSGALRAHVEDARFGIVTSIRGLPLGVRDDLQALFGSSNLDIVDPGATF
Ga0193743_110713413300019889SoilMGLGRLLCAIGLSVWPAVAATSQMAVPAALPGTLRDHVKDERFEVVTSIRGLPLGVRDGLQTLFGSQTLDIAESRAEFQGTD
Ga0193738_118642523300020020SoilMRRTRVLSAISGCLWSAVIAGSQTATPIELSPGLRAHVKTERFGIVTSIRGLPLGVRDMLQTLFASQTLDIAE
Ga0224505_1009753823300022214SedimentMGVGLWWAVCSGSQGTPPVALPGDLRAHVRDERFGIVTSIRGLPLGVRAALQTLFDSQTLDI
Ga0247743_107498623300023067SoilMRRTRLFCAIGVSLWSAAVTGSQAAPSAALSEALRAHVKAERFQIVTSVRGLPL
Ga0207680_1043489223300025903Switchgrass RhizosphereMYRVWMRRTRLFCAIGVSLWSAAVTGSQAAPSSALSEALRAHVKAERFQIVTSLRGLPLGVRDGLQTL
Ga0207645_1008518613300025907Miscanthus RhizosphereMRNTRLFFLCAIGVSLWSAVGAGSQAAAPTALSGALRDRVKDERFGIVTSIRGLPLGVRDELQTLFGSQTLDIADPGGASLHERVGPRNPETEHVDQG
Ga0207650_1028910033300025925Switchgrass RhizosphereMIRTRLLCAIGVSLWSVVVAGSQAAPSGPLSGALRTHIADDRFQIVTSIRGLPLGVRNEL
Ga0207712_1173524213300025961Switchgrass RhizosphereMRHTRLLCALAVSLWLAVVAGSQVAPGALSGALRDYVRDGRFGLVTSIRGLPLGVRHELQTMFGSQTLDIAE
Ga0209998_1012737213300027717Arabidopsis Thaliana RhizosphereMRRTPLFCAIGVVLWSAAAIANQATSTPALSDALRAHVKDDRFQIVTAVRGLPLGVRDGLQALFGSQSLDIADPDADFQVTDV
Ga0209486_1008483633300027886Agricultural SoilMRWTKLLCAIRVSLSSAVFAASQATDAGALSEALRAHVQADRFEIVTAVRGLPLGVRDNLQMLFG
Ga0207428_1071357913300027907Populus RhizosphereMCHTRLLYAIGVSLWAAVVAGSQAVPPIAPSEALQAHLTNERFGIVTSIRGLPLGVRERLQMLFGSQTLDI
Ga0207428_1124277513300027907Populus RhizosphereMRRTGLFCAIGLSLWSAVIAGNQAAAPAELSLELRAHVKDERFGIVTSIRGL
Ga0209382_1057050723300027909Populus RhizosphereMRRTQLLCAIGVSFWSAMAAGSQATDAAALSGTLRTHVQDERFGIVTSIRGLPLGVRDGLQTLFGSRELDMGDPG
(restricted) Ga0233417_1049325323300028043SedimentVHRILLCAIGVGSAIAAGSQAAPPVALSKELRARVQEERFQIVTSLRGLPLGVRDGLQTL
Ga0247824_1021766323300028809SoilMRRTRLFCAIGVSLCSAAITGSQAPSAVLSETLRAHVKAEQFQIVTSVRGLPLGVRDGLQ
Ga0247825_1001243013300028812SoilMRRTRLLCAIGASLWSAVIAGSQAAAPVELSPVLRAHVKDERFGIVTSIRGLPLGVRNGLQMLWGS
Ga0247825_1127019513300028812SoilMRRKRMLCAIGAILGSAVIAGSQSGAPVELPLDLRAHVKADRFGIVTSIRGLPLGVRNGLQTLWGSQA
Ga0247825_1142946313300028812SoilMRRAHFLFAIGVSLWSAVVAGRQAPSTALSAALRAHVQDERFGIVTSIRGLPLGVRAAD
Ga0307499_1001248713300031184SoilMRHTRLLCAIGVSLWSAVVAGNQAPPTAALSEAQRAHVKNERFDIVTSIRGLPLGVRDALQK
Ga0310888_1095004623300031538SoilMRCTQLLCAIGVGMCSAGVAGDQEPAAGALTGALRTHVAEERFDVVTSIRGLPLGVRDGLQALFGSGT
Ga0310887_1089652923300031547SoilMRNTRLFFLCAIGVSLWSAVGAGSQAAAPTALSGALRDRVKDERFGIVTSIRGLPLGVRDELQTLFGSQTLDIADPGGAFQVTDAIV
Ga0307408_10213434213300031548RhizosphereMFLRRVIVLLCAVGVILWLAMGAGKQAAPRAELSGALQAHVKDERFGIVTSIRG
Ga0310886_1022496313300031562SoilMRHTRLLCAIGVSVWSAVVAGSQAAAPVVPSEALRAHVKDERFSIVTSIRGLPLGVREGLQT
Ga0310886_1112824713300031562SoilVKRLLCAIGVTVWSAVMAASQAAAPVVMPGALHAHVKDERFEIVTSIRGLPLGVREGLQTLFGSRTL
Ga0310907_1056451513300031847SoilMRNTRLFFLCAIGVSLWSAVGAGSQAAAPTALSGALRDRVKDERFGIVTSIRGLPLGVRDELQ
Ga0310904_1055091423300031854SoilMRRTQVVCAIGLSLWSALVAGRQAVAPGALPEALRAHLKGERLQIVTSIRGLPLGVRDSLQMLFGSQSLDIA
Ga0310884_1093382723300031944SoilMRWTKLLCAIGVSLWSVVFAGSQVTDGGALSAALRAHLQAERFEIVTSIRGLPLGVRDRLQMLFGNHTLDIAD
Ga0307416_10104855323300032002RhizosphereMHRIRLFCAIGVSLWAAVLAGNQAAPAVILPDALRLHLKDERFAIVTSIRGLPLGVRN
Ga0310902_1037148623300032012SoilMRWTKLLCAIGVSLWSVFFAGSQVTDGGALSAALRAHLQAERFEIVTSIRGLPLGVRDRLQMLFGSHTLDIADPGAQFQGSNVVAD
Ga0310902_1136347423300032012SoilMYRTLLLCAIGGGLWSAAITGQPAPPVALAGELRAHVQDERFQIVSSIRGLPLGVRAGLQTLF
Ga0310899_1047005723300032017SoilMRNTRLFFLCAIGVSLWSAVGAGSQAAAPTALSGALRDRVKDERFGIVTSIRGLPLGVRDELQTLFGSQTLDIADPGGAFQVTDAI
Ga0310890_1007126213300032075SoilMRRIRLFCAIGVGFWSTVVAGSQAAPPIALPGELRTHVRDERFGIVTSIRGLPLGVRSGLQTLFDSQAL
Ga0310890_1049879013300032075SoilMRRTQVVCAIGLSLWSALVAGRQAVAPGALPEALRAHLKGERLQIVTSIRGLPLGVRDSLQMLFGSQSLDI
Ga0310890_1113083823300032075SoilMRRTRFLFAVGVSVWSAVIAGSQAAAPVALSRELRAHVKDERFEIVTSIRGLPLGVRDGLQTLF
Ga0310895_1012955013300032122SoilMRWTKLLCAIGVSLWSVVFAGSQVTDGGALSAALRAHLQAERFEIVTSIRGLPLGVRDRLQMLFGSHTLDIADPGAEFQGTT
Ga0310896_1062056313300032211SoilMRNTRLFFLCAIGVSLWSAVGAGSQAAAPTALSGALRDRVKDERFGIVTSIRGLPLGVRDELQTLFGSQTLDIADPGGAFQVTDAIVDPKLPTRR
Ga0310812_1020309313300032421SoilMIRTRLLCAIGVSLWSVVVAGSQAAPSGPLSGALRTHIADDRFQIVTSIRGLPLGVRNELQTLFGTQSL
Ga0316605_1095152923300033408SoilMRRTSLLCAVGLSLWSTVVTGGQVAAPGALSGTLRGHVQDERFGIVTSIRGLPLGVRD
Ga0316605_1218538523300033408SoilMRQTRLLCAIGMSLWSAVVAGSQAAAPVALSGALRDQVKNGRFGMVTSIRGLP
Ga0316601_10060798513300033419SoilMRHTRLLCAIGVGLWSAVVAGSQAAAPVALPGALRDLVKNGRFGMVTSIRGLPLGVRDG
Ga0247830_1034230913300033551SoilMRRTRLFCAIGVSLGSALVTCSQAAPSGALSEALRDHVKNERLDIVTSIRGLPLGVRDGLQTLFGSQA
Ga0364929_0227815_433_6213300034149SedimentMRRTRLLCAIGVGLWSAVIAGSQAAAPVELPLELQAHVKDERFGIVTAIRGLPLGVRIGLQAL

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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