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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F070145 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 123 |
| Average Sequence Length | 47 residues |
| Representative Sequence | MVQASDKQSRKANEKTRGDIKTNKGWFWCHERKDFFRWEEFINYKYKN |
| Number of Associated Samples | 102 |
| Number of Associated Scaffolds | 123 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 66.67 % |
| % of genes near scaffold ends (potentially truncated) | 52.85 % |
| % of genes from short scaffolds (< 2000 bps) | 58.54 % |
| Associated GOLD sequencing projects | 92 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.31 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (72.358 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (32.520 % of family members) |
| Environment Ontology (ENVO) | Unclassified (39.837 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (91.870 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 34.21% β-sheet: 10.53% Coil/Unstructured: 55.26% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.31 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 123 Family Scaffolds |
|---|---|---|
| PF00959 | Phage_lysozyme | 43.90 |
| PF10614 | CsgF | 13.82 |
| PF01521 | Fe-S_biosyn | 2.44 |
| PF03783 | CsgG | 2.44 |
| PF13759 | 2OG-FeII_Oxy_5 | 2.44 |
| PF04773 | FecR | 1.63 |
| PF11019 | DUF2608 | 1.63 |
| PF03477 | ATP-cone | 0.81 |
| PF00154 | RecA | 0.81 |
| PF08242 | Methyltransf_12 | 0.81 |
| PF12705 | PDDEXK_1 | 0.81 |
| COG ID | Name | Functional Category | % Frequency in 123 Family Scaffolds |
|---|---|---|---|
| COG0316 | Fe-S cluster assembly iron-binding protein IscA | Posttranslational modification, protein turnover, chaperones [O] | 2.44 |
| COG1462 | Curli biogenesis system outer membrane secretion channel CsgG | Cell wall/membrane/envelope biogenesis [M] | 2.44 |
| COG4841 | Uncharacterized conserved protein YneR, related to HesB/YadR/YfhF family | Function unknown [S] | 2.44 |
| COG0468 | RecA/RadA recombinase | Replication, recombination and repair [L] | 0.81 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 72.36 % |
| All Organisms | root | All Organisms | 27.64 % |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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| Habitat | Taxonomy | Distribution |
| Salt Marsh | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh | 32.52% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 8.94% |
| Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 8.94% |
| Estuarine Water | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water | 8.94% |
| Seawater | Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater | 7.32% |
| Pelagic Marine | Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine | 4.88% |
| Seawater | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater | 4.88% |
| Pond Water | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water | 4.88% |
| Pelagic Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine | 2.44% |
| Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine | 2.44% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 1.63% |
| Marine | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine | 1.63% |
| Estuarine | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine | 1.63% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 1.63% |
| Freshwater And Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine | 1.63% |
| Freshwater Lake | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake | 0.81% |
| Seawater | Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater | 0.81% |
| Sackhole Brine | Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine | 0.81% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 0.81% |
| Seawater | Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater | 0.81% |
| Water | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water | 0.81% |
| Saline Water And Sediment | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment | 0.81% |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000117 | Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010 | Environmental | Open in IMG/M |
| 3300000928 | Marine plume microbial communities from the Columbia River - 25 PSU | Environmental | Open in IMG/M |
| 3300000929 | Marine plume microbial communities from the Columbia River - 15 PSU | Environmental | Open in IMG/M |
| 3300001346 | Pelagic Microbial community sample from North Sea - COGITO 998_met_01 | Environmental | Open in IMG/M |
| 3300001354 | Pelagic Microbial community sample from North Sea - COGITO 998_met_05 | Environmental | Open in IMG/M |
| 3300001589 | Marine viral communities from the Pacific Ocean - LP-40 | Environmental | Open in IMG/M |
| 3300005239 | Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine | Environmental | Open in IMG/M |
| 3300005512 | Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water | Environmental | Open in IMG/M |
| 3300005738 | Seawater microbial communities from Vineyard Sound, MA, USA - sterilised with crude oil T0 | Environmental | Open in IMG/M |
| 3300006401 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_RNA1 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006403 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_RNA1 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006404 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_RNA2 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006561 | Marine microbial communities from the Black Sea in Odessa region - Od_1 | Environmental | Open in IMG/M |
| 3300006752 | Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG | Environmental | Open in IMG/M |
| 3300006789 | Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG | Environmental | Open in IMG/M |
| 3300006793 | Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG | Environmental | Open in IMG/M |
| 3300006802 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 | Environmental | Open in IMG/M |
| 3300006922 | Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG | Environmental | Open in IMG/M |
| 3300008012 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA | Environmental | Open in IMG/M |
| 3300009000 | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG | Environmental | Open in IMG/M |
| 3300009027 | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG | Environmental | Open in IMG/M |
| 3300009086 | Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713 | Environmental | Open in IMG/M |
| 3300009437 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414 | Environmental | Open in IMG/M |
| 3300010150 | Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG | Environmental | Open in IMG/M |
| 3300012963 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_RNA1 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300016734 | Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041410CS metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300016758 | Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071403BT metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300017706 | Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG | Environmental | Open in IMG/M |
| 3300017725 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29 | Environmental | Open in IMG/M |
| 3300017755 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09 | Environmental | Open in IMG/M |
| 3300017762 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18 | Environmental | Open in IMG/M |
| 3300017763 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20 | Environmental | Open in IMG/M |
| 3300017776 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23 | Environmental | Open in IMG/M |
| 3300017824 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017950 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017951 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017967 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017968 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017985 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018041 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018048 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018049 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018413 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011509CT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018415 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011508AT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018416 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018418 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018420 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018423 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018428 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018775 | Metatranscriptome of marine microbial communities from Baltic Sea - GS679_0p8 | Environmental | Open in IMG/M |
| 3300018876 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300019267 | Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071402VT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300019274 | Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071405CT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300019277 | Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071412AT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300019281 | Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071409AT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300020053 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041401AS metaG (spades assembly) | Environmental | Open in IMG/M |
| 3300020174 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041409US metaG (spades assembly) | Environmental | Open in IMG/M |
| 3300020176 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011505AT metaG (spades assembly) | Environmental | Open in IMG/M |
| 3300020185 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1 | Environmental | Open in IMG/M |
| 3300020188 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041411US metaG (spades assembly) | Environmental | Open in IMG/M |
| 3300020191 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041410US metaG (spades assembly) | Environmental | Open in IMG/M |
| 3300020438 | Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942) | Environmental | Open in IMG/M |
| 3300021364 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304 | Environmental | Open in IMG/M |
| 3300021368 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550 | Environmental | Open in IMG/M |
| 3300021375 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132 | Environmental | Open in IMG/M |
| 3300021379 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247 | Environmental | Open in IMG/M |
| 3300021389 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127 | Environmental | Open in IMG/M |
| 3300021957 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D | Environmental | Open in IMG/M |
| 3300021958 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D | Environmental | Open in IMG/M |
| 3300021959 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D | Environmental | Open in IMG/M |
| 3300021960 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D | Environmental | Open in IMG/M |
| 3300021964 | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D | Environmental | Open in IMG/M |
| 3300022065 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2) | Environmental | Open in IMG/M |
| 3300022900 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011510BT metaG | Environmental | Open in IMG/M |
| 3300022921 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG | Environmental | Open in IMG/M |
| 3300022922 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011508AT metaG | Environmental | Open in IMG/M |
| 3300023081 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG | Environmental | Open in IMG/M |
| 3300023105 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG | Environmental | Open in IMG/M |
| 3300023108 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG | Environmental | Open in IMG/M |
| 3300023175 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG | Environmental | Open in IMG/M |
| 3300024255 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG | Environmental | Open in IMG/M |
| 3300024348 | 0.2um to 3um size fraction coassembly | Environmental | Open in IMG/M |
| 3300025098 | Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025137 | Marine viral communities from the Pacific Ocean - LP-32 (SPAdes) | Environmental | Open in IMG/M |
| 3300025653 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025680 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328 (SPAdes) | Environmental | Open in IMG/M |
| 3300025694 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426 (SPAdes) | Environmental | Open in IMG/M |
| 3300025701 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025759 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes) | Environmental | Open in IMG/M |
| 3300025821 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110421 (SPAdes) | Environmental | Open in IMG/M |
| 3300025822 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414 (SPAdes) | Environmental | Open in IMG/M |
| 3300025830 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407 (SPAdes) | Environmental | Open in IMG/M |
| 3300025853 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes) | Environmental | Open in IMG/M |
| 3300025870 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025897 | Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes) | Environmental | Open in IMG/M |
| 3300026125 | Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MG (SPAdes) | Environmental | Open in IMG/M |
| 3300026138 | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG (SPAdes) | Environmental | Open in IMG/M |
| 3300026183 | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG (SPAdes) | Environmental | Open in IMG/M |
| 3300026187 | Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes) | Environmental | Open in IMG/M |
| 3300028197 | Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m | Environmental | Open in IMG/M |
| 3300029448 | Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082 | Environmental | Open in IMG/M |
| 3300031519 | Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| DelMOWin2010_100078815 | 3300000117 | Marine | MVHASDKQSRKANEETRGDLKKPKHKGNFWCHERKDFFKWEKLINYNYKT* |
| DelMOWin2010_100525416 | 3300000117 | Marine | MVQASNKQSRKADEKTRGDIKTNKGWFWCHERKDLFRWDEFINYKYK* |
| OpTDRAFT_100588042 | 3300000928 | Freshwater And Marine | MVQASNKQSREANEKTRRGIEANYKGRFYCHERKDFFPWKEFVNYKYNK* |
| NpDRAFT_101803783 | 3300000929 | Freshwater And Marine | KMVQASNKQSREADEKTRRGIEANYKGRFYCHERKDFFPWKEFVNYKYNK* |
| JGI20151J14362_100312414 | 3300001346 | Pelagic Marine | MVHASDKQSRKANEETRGDLKQPKHKGNFWCHERKDFFKWEEFRNYNYKT* |
| JGI20155J14468_100166397 | 3300001354 | Pelagic Marine | MVHASDKQSRKANEETRGDLKKPKHKGNFWCHERKDFFKWEEFRNYNYKT* |
| JGI24005J15628_100232403 | 3300001589 | Marine | MVQASNKQSRTADEKTRGDIKTNKGWFWCHERKDLFRWDEFINYKYK* |
| Ga0073579_10325614 | 3300005239 | Marine | MVQASNKQSREADEKTRRGIEANYKGRFYCHERKDFFPWKEFVNYKYNK* |
| Ga0074648_11302071 | 3300005512 | Saline Water And Sediment | MVQASDKQSRKANEKTRGDIGTNKGWFWCHERKDFFRWEEFINYKYKN* |
| Ga0076926_1099555 | 3300005738 | Marine | MVQASNKQSREANEKTRGDIKANKGWFWCHERKDYFRWEEFINYKYIK* |
| Ga0075506_17898463 | 3300006401 | Aqueous | MVQSSDEQSRKADEKTRGDLKKPKHKGNFWCHERKDFFKWEELINYNYKT* |
| Ga0075514_19356442 | 3300006403 | Aqueous | MVQASNKQSRKADEKTRGDIKQTNTNKGLFWCHERKDFFKWEELINYNYKT* |
| Ga0075515_100149643 | 3300006404 | Aqueous | MVHASDKQSRKANEETRGDLKKPKHKGNFWCHERKDFFKWEELINYNYKT* |
| Ga0075515_100313883 | 3300006404 | Aqueous | MVQASNKQSRKADEKTRGDIKQTNTNKGLFWCHERKDFFKWKELINYNYKT* |
| Ga0101389_10002001 | 3300006561 | Marine | KQSRKANEETRGDLKKPKHKGNFWCHERKDFFKWEEFRNYNYKT* |
| Ga0098048_10128455 | 3300006752 | Marine | MVQASDKQSRKANEKTRGDIGTNKGWFWCHERKNYFRWEELINYKYNK* |
| Ga0098054_11353421 | 3300006789 | Marine | GGCNRRQRFKMVQASNKQSRKANEKTRGDIGTNKGWFWCHERKNYFRWEELINYKYNK* |
| Ga0098055_100961710 | 3300006793 | Marine | MVQASNKQSRKADEKTRGDIGTNKGWFWCHERKNYFRWEELINYKYNK* |
| Ga0098055_10126491 | 3300006793 | Marine | MVQASNKQSRKADEKTRRGIEANYKGRFYCHERKDFFPWK |
| Ga0098055_10452301 | 3300006793 | Marine | MVQASNKQSRKADEKTRRGIEANYKGRFYCHERKDFFPWKEFVNYKYNK* |
| Ga0070749_1000562313 | 3300006802 | Aqueous | MVQASNKQSRKANETTRGDIKTNKGWFWCHERKDFFRWEEFINYKYKN* |
| Ga0098045_10026882 | 3300006922 | Marine | MVQASDKQSRKADEKTRGDIGTNKGWFWCHERKNYFRWEELINYKYNK* |
| Ga0075480_101108426 | 3300008012 | Aqueous | KMVQASNKQSRKANETTRGDIKTNKGWFWCHERKDFFRWEEFINYKYKN* |
| Ga0102960_13589962 | 3300009000 | Pond Water | VHASDKQSRKANEETRGDLKKPKHKGNFWCHERKDFFKWKELINYNYKT* |
| Ga0102957_10480435 | 3300009027 | Pond Water | RGDLKKPKHKGNFWCHERKDFFKWEELINYNYKT* |
| Ga0102812_102382204 | 3300009086 | Estuarine | EKTRRGIEANYKGRFYCHERKDFFPWKEFVNYKYNK* |
| Ga0115556_12139603 | 3300009437 | Pelagic Marine | QSRKANEETRGDLKQPKHKGNFWCHERKDFFKWEELINYNYKT* |
| Ga0098056_10169968 | 3300010150 | Marine | FKMVQASDKQSRKANEETRGDTVTHKGWYWCHERKDFFRWEEFINYNYKI* |
| Ga0129340_13611281 | 3300012963 | Aqueous | ASNKQSRKADEKTRGDIKQTNTNKGLFWCHERKDFFKWEELINYNYKT* |
| Ga0182092_13864653 | 3300016734 | Salt Marsh | DKQSRKANEETRGDLKKPKHKGNFWCHERKDFFKWEELINYNYKT |
| Ga0182070_14384254 | 3300016758 | Salt Marsh | KMVQASDEQSREANEETRRDLDHPVYKGWFWCHERKDFFRWEELLNNKN |
| Ga0181377_100026211 | 3300017706 | Marine | MVQASNKQSRKADEKTRRGIEANYKGRFYCHERKDFFPWKEFVNYKYNK |
| Ga0181398_10155525 | 3300017725 | Seawater | MVQASNKQSRKADEKARGDIKTNKGWFWCHERKDLFRW |
| Ga0181398_10310131 | 3300017725 | Seawater | FKMVQASNKQSRKADEKARGDIKTNKGWFWCHERKDLFRWDEFINYKYK |
| Ga0181411_100465716 | 3300017755 | Seawater | MVQSSDKPSRKANEETRGDLKQPKHKGNFWCHERKNYFKWEEFRNYN |
| Ga0181422_10530605 | 3300017762 | Seawater | FKMVQSSDKPSRKANEETRGDLKQPKHKGNFWCHERRNYFKWEEFRNYNYKD |
| Ga0181410_100000644 | 3300017763 | Seawater | MVQSSDKPSRKANEETRGDLKQPKHKGNFWCHERKNYFKWEEFRNYNYKD |
| Ga0181394_10137641 | 3300017776 | Seawater | KPSRKANEETRGDLKQPKHKGNFWCHERKNYFKWEEFRNYNYKD |
| Ga0181552_1001300610 | 3300017824 | Salt Marsh | MVHASDKQSRKANEETRGDLKKPKHKGNFWCHERKDFFKWEELINYNYKT |
| Ga0181607_100770461 | 3300017950 | Salt Marsh | MVQASDKQSRKANEETRGDLKKPKHKGNFWCHERKDF |
| Ga0181607_101470801 | 3300017950 | Salt Marsh | MVHASDKQSRKANEETRGDLKKPKHKGNFWCHERKDFFKWEEFINYNYKT |
| Ga0181577_100633644 | 3300017951 | Salt Marsh | MVQASDKQSRKVNEKTRGDIGTNKGWFWCHERKDFFRWEEFINYKYKN |
| Ga0181590_102932113 | 3300017967 | Salt Marsh | MVQTSNKSSRETYEEARKDLDHPVYKCWFWCHERKDFFRWEELLN |
| Ga0181587_101877201 | 3300017968 | Salt Marsh | QASDKQSRKVNEKTRGDIKTNKGWFWCHERKDFFRWEEFINYKYKN |
| Ga0181576_100396658 | 3300017985 | Salt Marsh | MVQASDKQSRKVNEKTRGDIKTNKGWFWCHERKDFFRWEEFINYKYKN |
| Ga0181601_1003642110 | 3300018041 | Salt Marsh | MVQASNKQSRKADEKTRGDIKQTNTNKGLFWCHERKDFFKWEELINYNYKT |
| Ga0181601_100798461 | 3300018041 | Salt Marsh | MVQASDKQSRKANEETRGDLKKPKHKGNFWCHERKDFFKWEEFI |
| Ga0181601_104455693 | 3300018041 | Salt Marsh | ASDKQSRKANEETRGDLKKPKHKGNFWCHERKDFFKWEEFINYNYKT |
| Ga0181601_106950891 | 3300018041 | Salt Marsh | MVHASDKQSRKANEETRGDLKKPKHKGNFWCHERKDFFKWEEFI |
| Ga0181606_100791345 | 3300018048 | Salt Marsh | MVHASDKQSRKANEETRGDLKKPKHKGNFWCHERKDFFKWEEF |
| Ga0181572_105040223 | 3300018049 | Salt Marsh | EGGCQRRQRFKMVQSSDKQSRKADEKTRKDLDHPVYKGWYWCHERKDYFRWKEFINYKYK |
| Ga0181560_103053651 | 3300018413 | Salt Marsh | MVQASDKQSRKANEKTRGDIKTNKGWFWCHERKDFFRWEEFI |
| Ga0181559_101170715 | 3300018415 | Salt Marsh | MVQASDKQSRKVNEKTRGDIGTNKGWFWCHERKDFFRWEEFINYKYK |
| Ga0181553_104546203 | 3300018416 | Salt Marsh | MVQASDKQSRKANEKTRGDIGTNKGWFWCHERKDFFRWEEFINYKYKN |
| Ga0181567_105227723 | 3300018418 | Salt Marsh | SRKVNEKTRGDIKTNKGWFWCHERKDFFRWEEFINYKYKN |
| Ga0181563_101004135 | 3300018420 | Salt Marsh | MVQASNKQSRKANEKTRGDIGTNKGWFWCHERKDFFRWEEFINYKYKN |
| Ga0181593_107131613 | 3300018423 | Salt Marsh | DKQSREANEKTRRDLEPKNKGWYWCHERKDFFRWEEFINYKFKD |
| Ga0181568_105085583 | 3300018428 | Salt Marsh | MVQTSDKQSRKANEKTRGDIGTNKGWFWCHERKDFF |
| Ga0188848_10019815 | 3300018775 | Freshwater Lake | MAQASDKQSREANEETRRDIENDYKGRFYCHERKDYFAWKEFVNYNYKT |
| Ga0181564_100233292 | 3300018876 | Salt Marsh | MVHASDKQSRKANEETRGDLKKPKHKGNFWCHERKDFFKWEEFRNYNYKT |
| Ga0181564_100262089 | 3300018876 | Salt Marsh | MVQASDKQSRKANEKTRGDIKTNKGWFWCHERKDFFRWEEFINYYK |
| Ga0182069_11811823 | 3300019267 | Salt Marsh | KADEKTRKDLDHPVYKGWYWCHERKDYFRWKEFINYNFKD |
| Ga0182073_15698884 | 3300019274 | Salt Marsh | GQGGPRFKMVQSSDKQSREANEKTRRDLEPKNKGWYWCHERKDFFRWEEFINYKFKD |
| Ga0182081_14015903 | 3300019277 | Salt Marsh | VQSSDKQSREANEETRRDLEPKNKGWYWCHERKDFFRWEEFINYKFKD |
| Ga0182077_10089841 | 3300019281 | Salt Marsh | MVQASDEQSREANEETRRDLDHPVYKGWFWCHERKDFFRWEELLNNKN |
| Ga0181595_104351471 | 3300020053 | Salt Marsh | KMVQASNKQSRKADEKTRGDIKQTNTNKGLFWCHERKDFFKWEELINYNYKT |
| Ga0181603_100893804 | 3300020174 | Salt Marsh | MVHASDKQSRKANEETRGDLKKPKHKGNFWCHERKDFFKW |
| Ga0181556_10129023 | 3300020176 | Salt Marsh | MVQASDKQSREANEKTRGDIKTNKGWFWCHERKDFFRWEEFINYYK |
| Ga0206131_100281267 | 3300020185 | Seawater | MVQASNKQSRKADEKTRGDIKTNKGWFWCHERKDLFRWDEFINYKYSK |
| Ga0181605_100589572 | 3300020188 | Salt Marsh | MVQASDKQSRKANEETRGDLKKPKHKGNFWCHERKDFFKWEEFINYNYKT |
| Ga0181604_103584493 | 3300020191 | Salt Marsh | VHASDKQSRKANEETRGDLKKPKHKGNFWCHERKDFFKWEEFINYNYKT |
| Ga0211576_101070565 | 3300020438 | Marine | MVQASNKQSRKADEKARGDIKTNKGWFWCHERKDLFRWDEFINYKYK |
| Ga0213859_100294583 | 3300021364 | Seawater | MVQASDKQSRKADEKTRGDIKTTHKGWFWCHERRDFFRWEEFRNYKYKD |
| Ga0213859_100461114 | 3300021364 | Seawater | MVQASDKQSRKANETTRGDIGTNKGWFWCHERKDFFRWEEFINYYK |
| Ga0213859_104566902 | 3300021364 | Seawater | QRFKMVHASDKQSRKANEETRGDLKKPKHKGNFWCHERKDFFKWEEFRNYNYKT |
| Ga0213860_100942615 | 3300021368 | Seawater | RSGQGGPRFKMVQSSDKQSREANEETRRDLEPKNKGWYWCHERKDFFRWEEFINYKFKD |
| Ga0213860_103984531 | 3300021368 | Seawater | EKTRGDIKTTHKGWFWCHERRDFFRWEEFRNYKYKD |
| Ga0213869_100132419 | 3300021375 | Seawater | MVQASNKQSRKADEKTRGDIKTNKGWFWCHERKDLFRWDEFINYKYK |
| Ga0213869_100716275 | 3300021375 | Seawater | MVHASDKQSRKANEETRGDLKQPKHKGNFWCHERKDFFKWKELINYNYKT |
| Ga0213864_101641163 | 3300021379 | Seawater | MVQASDEQSREANEETRRDLDHPVYKCWFWCHERKDFFRWEELLNNKN |
| Ga0213868_105619251 | 3300021389 | Seawater | MVQSSDKQSRKADEKTRGDLEPKNKGWYWCHERKDFFRWEEFINYK |
| Ga0222717_1001604210 | 3300021957 | Estuarine Water | MVQASNKQSRKVNEETRGDIKTNKGWFWCHERKDFFRWEELMNYKYNK |
| Ga0222717_102104451 | 3300021957 | Estuarine Water | MVQSSDKQSRKANEETRGDLKKPKHEGNFWCHERKDFFKWEELINYNYKT |
| Ga0222718_100379178 | 3300021958 | Estuarine Water | MVQASNKQSRKANETTRGDIKTNKGWFWCHERKDFFRWEEFINYKYKN |
| Ga0222718_100710203 | 3300021958 | Estuarine Water | MVQSSDKQSRKANEETRGDLKKPKHKGNFWCHERKDFFKWEELINYNYKT |
| Ga0222718_105363433 | 3300021958 | Estuarine Water | VNEETRGDIKTNKGWFWCHERKDFFRWEELMNYKYKD |
| Ga0222716_102354854 | 3300021959 | Estuarine Water | MVQASNKQSRKVNEKTRGDIKTNKGWFWCHERKDFFRWEELMNYKYKD |
| Ga0222715_100157256 | 3300021960 | Estuarine Water | MVQSSDKQSREANEETRRDLEPKNKGWYWCHERKDFFRWEEFINYKYKD |
| Ga0222715_100542654 | 3300021960 | Estuarine Water | MVQASDKQSRKANEKTRGDIKTNHKGWFWCHERKDFFRWEEFINYKYKN |
| Ga0222719_100034063 | 3300021964 | Estuarine Water | MVQASNKQSRKVNEETRGDIKTNKGWFWCHERKDFFRWEELMNYKYKD |
| Ga0222719_101632622 | 3300021964 | Estuarine Water | MVQASNKQSRKADEKTRGDIKQTNTNKGLFWCHERKDFFKWKELINYNYKT |
| Ga0222719_102078555 | 3300021964 | Estuarine Water | NKQSRKVNEETRGDIKTNKGWFWCHERKDFFRWEELMNYKYNK |
| Ga0212024_10660141 | 3300022065 | Aqueous | MVQASNKQSRKADEKTRGDIKQTNTNKGLFWCHER |
| Ga0255771_12981922 | 3300022900 | Salt Marsh | MVQASNKQSRKANEKTRGDIGTNKGWFWCHERKDFFRWEEFINY |
| Ga0255765_11292264 | 3300022921 | Salt Marsh | KMVQASDKQSRKANEETRGDLKKPKHKGNFWCHERKDFFKWEEFINYNYKT |
| Ga0255779_11911881 | 3300022922 | Salt Marsh | MVQASDKQSRKANETTRGDIKTNKGWFWCHERKDFFRWEEFINY |
| Ga0255764_1002142911 | 3300023081 | Salt Marsh | SDKQSREANEKTRRDLEPKNKGWYWCHERKDFFRWEEFINYNFKD |
| Ga0255782_103472533 | 3300023105 | Salt Marsh | MVQASDKQSRKANEKTRGDIKTNKGWFWCHERKDFFRWEEFINYKYKN |
| Ga0255784_101642795 | 3300023108 | Salt Marsh | SDKQSRKANEKTRGDIKTNKGWFWCHERKDFFRWEEFINYKYKN |
| Ga0255777_102213334 | 3300023175 | Salt Marsh | SAAVRRLEGGCQRRQRFKMVQASDKQSRKVNEKTRGDIKTNKGWFWCHERKDFFRWEEFINYKYKN |
| (restricted) Ga0233438_101375031 | 3300024255 | Seawater | MVQASNKQSRKANEKTRGDIKTNKGWFWCHERKDYFRWE |
| Ga0244776_100312199 | 3300024348 | Estuarine | MVQASNKQSREANEKTRRGIEANYKGRFYCHERKDFFPWKEFVNYKYNK |
| Ga0208434_10027254 | 3300025098 | Marine | MVQASDKQSRKANEKTRGDIGTNKGWFWCHERKNYFRWEELINYKYNK |
| Ga0209336_100658252 | 3300025137 | Marine | MVQASNKQSRTADEKTRGDIKTNKGWFWCHERKDLFRWDEFINYKYK |
| Ga0208428_11104992 | 3300025653 | Aqueous | MVQSSDEQSRKADEKTRGDLKKPKHKGNFWCHERKDFFKWEELINYNYKT |
| Ga0209306_10208661 | 3300025680 | Pelagic Marine | MVHASDKQSRKANEETRGDLKQPKHKGNFWCHERK |
| Ga0209406_10288424 | 3300025694 | Pelagic Marine | MVQASNKQSRKADEKTRGDIKTNKGWFWCHERKDLFRWDE |
| Ga0209771_12159901 | 3300025701 | Marine | GCQRRQRFEMVHASDKQGRKANEETRGDLKKPKHKGNFWCHERKDFFKWEELINYNYKT |
| Ga0208899_10110339 | 3300025759 | Aqueous | MVQASNKQSRKADEKTRGDIKQTNTNKGLFWCHERKTFSNGKS |
| Ga0209600_12073252 | 3300025821 | Pelagic Marine | HASDKQSRKANEETRGDLKKPKHKGNFWCHERKDFFKWEEFRNYNYKT |
| Ga0209714_11842802 | 3300025822 | Pelagic Marine | MVQASDKQSRKANEETRGDLKKPKHKGNFWCHERKDFFKWEEFIN |
| Ga0209832_10408013 | 3300025830 | Pelagic Marine | MVHASDKQSRKANEETRGDLKQPKHKGNFWCHERKDFFKWEEFRNYNYKT |
| Ga0208645_10174729 | 3300025853 | Aqueous | MVQASDKQSRKANETTRGDIKTNKGWFWCHERKDFFRWEEFINYKYKN |
| Ga0209666_12328913 | 3300025870 | Marine | MVQASNEQSRKANEKTRGDIKTNKGWFWCHERKDYFRWEELMNYKYNK |
| Ga0209425_100672082 | 3300025897 | Pelagic Marine | MVQASNKQSREANEKTRGDIKANKGWFWCHERKDYFRWEEFINYKYIK |
| Ga0209962_10601522 | 3300026125 | Water | MVHASDKQSRKANEETRGDLKKPKHKGNFWCHERKDFFKWEELIN |
| Ga0209951_100213412 | 3300026138 | Pond Water | MVQASNKQSRKVNEETRGDIKTNKGWFWCHERKDF |
| Ga0209932_10708591 | 3300026183 | Pond Water | RFKMVQASDKQSRKANEKTRGDIKTNHKGWFWCHERKDFFKWKELINYNYKT |
| Ga0209929_100046229 | 3300026187 | Pond Water | MVQASNEQSRKANEKTRGDIKTNKGWFWCHERKDFFRWEELMNYKYNK |
| Ga0209929_11161091 | 3300026187 | Pond Water | MVQSSDKQSRKANEETRGDLKKPKHKGNFWCHERK |
| Ga0257110_10227921 | 3300028197 | Marine | CQRRQRFKMVQASNKQSRTADEKTRGDIKTNKGWFWCHERKDLFRWDEFINYKYK |
| Ga0183755_100069428 | 3300029448 | Marine | MVQASNKQSRKVDEKTRGDIKTNKGWFWCHERKDLFRWDEFINYKYK |
| Ga0307488_100365914 | 3300031519 | Sackhole Brine | MVQASNKQSRTADEKTRGDIKTNKGWFWCHERKNLFRWDEFINYKYK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |