Metagenome / Metatranscriptome Family F069985

Basic Information
Family ID	F069985
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	52 residues
Representative Sequence	PLIVVWDATAFVIWLLTFGRSSIRWRNVDYRIREGMLVPAAPSPAQNSPQ
Number of Associated Samples	96
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	95.93 %
% of genes from short scaffolds (< 2000 bps)	75.61 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (64.228 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (41.463 % of family members)
Environment Ontology (ENVO)	Unclassified (37.398 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.341 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80 1JGI12053J15887_101899082 2JGI25384J37096_102384871 3JGI25616J43925_103856692 4Ga0058901_14897591 5Ga0066395_100046971 6Ga0066673_100691561 7Ga0066688_108135872 8Ga0066684_100175225 9Ga0066685_100030687 10Ga0066689_100060354 11Ga0066689_103502751 12Ga0070707_1003844962 13Ga0070732_107576831 14Ga0066661_100522311 15Ga0066661_101287613 16Ga0066694_100856861 17Ga0066696_101195511 18Ga0075019_105796852 19Ga0079222_100421724 20Ga0099791_102439311 21Ga0099793_101239731 22Ga0099793_105916672 23Ga0099794_100192121 24Ga0099794_101852262 25Ga0066710_1002723784 26Ga0066710_1031466632 27Ga0099829_101402681 28Ga0099828_100692421 29Ga0099828_105777492 30Ga0099827_105745572 31Ga0099827_118685431 32Ga0126376_121726282 33Ga0126372_129720052 34Ga0126378_105154061 35Ga0126379_100214531 36Ga0136449_1035680182 37Ga0137392_107226841 38Ga0137391_101946291 39Ga0137391_102723982 40Ga0137391_105587911 41Ga0137393_104331052 42Ga0137393_110092711 43Ga0137393_111824482 44Ga0137389_112477022 45Ga0137389_115662551 46Ga0137364_105640722 47Ga0137399_116957931 48Ga0137362_103311102 49Ga0137362_106937331 50Ga0137381_106754571 51Ga0137370_102079141 52Ga0137384_100551193 53Ga0137360_113799992 54Ga0137361_100885764 55Ga0137390_100382601 56Ga0137358_105290542 57Ga0137396_105461692 58Ga0137396_109939801 59Ga0137394_100500101 60Ga0137419_106213282 61Ga0137419_114684421 62Ga0137407_112121032 63Ga0137410_101858823 64Ga0164303_101802392 65Ga0134087_101063051 66Ga0134079_100007021 67Ga0137411_10782732 68Ga0137411_10907792 69Ga0137420_14198051 70Ga0137412_101180393 71Ga0182037_117823611 72Ga0187780_100660664 73Ga0187780_110664621 74Ga0066662_100846811 75Ga0066662_123286182 76Ga0179592_100009521 77Ga0179592_102876991 78Ga0210407_106485581 79Ga0210399_101068104 80Ga0210404_108768951 81Ga0179584_12760831 82Ga0210389_109298072 83Ga0210394_100386965 84Ga0210394_109900122 85Ga0210409_107776691 86Ga0242648_10927371 87Ga0137417_10902962 88Ga0137417_11517871 89Ga0137417_11994761 90Ga0137417_11994772 91Ga0137417_13274922 92Ga0209238_10902981 93Ga0209240_10571503 94Ga0209761_13109641 95Ga0209268_11195112 96Ga0209686_10020661 97Ga0209154_10028838 98Ga0209803_10276121 99Ga0209158_13680141 100Ga0209377_10670963 101Ga0209807_11865771 102Ga0209156_100297053 103Ga0209648_108376472 104Ga0208997_10713392 105Ga0208990_10860971 106Ga0209074_100468043 107Ga0209180_101695981 108Ga0209283_100935233 109Ga0209067_101365291 110Ga0209526_104598351 111Ga0073994_100742171 112Ga0307469_102781691 113Ga0318494_106505161 114Ga0307477_105277062 115Ga0307475_101132101 116Ga0307475_107685601 117Ga0318568_104081701 118Ga0307473_108732591 119Ga0307473_111229822 120Ga0307473_115420042 121Ga0307478_113570122 122Ga0311301_117096972 123Ga0307472_1016521991
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80 1JGI12053J15887_101899082 2JGI25384J37096_102384871 3Ga0066395_100046971 4Ga0066684_100175225 5Ga0066685_100030687 6Ga0066689_100060354 7Ga0070732_107576831 8Ga0075019_105796852 9Ga0099793_105916672 10Ga0099794_100192121 11Ga0126376_121726282 12Ga0126379_100214531 13Ga0137391_102723982 14Ga0137362_106937331 15Ga0137419_106213282 16Ga0182037_117823611 17Ga0187780_110664621 18Ga0210407_106485581 19Ga0210399_101068104 20Ga0209526_104598351
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50 1Ga0179584_12760831 2JGI12053J15887_101899082 3Ga0058901_14897591 4Ga0066395_100046971 5Ga0066673_100691561 6Ga0066689_100060354 7Ga0070732_107576831 8Ga0066710_1031466632 9Ga0099829_101402681 10Ga0099827_118685431 11Ga0126372_129720052 12Ga0126378_105154061 13Ga0136449_1035680182 14Ga0137392_107226841 15Ga0137391_102723982 16Ga0137393_110092711 17Ga0137393_111824482 18Ga0137389_112477022 19Ga0137396_105461692 20Ga0137419_106213282 21Ga0137419_114684421 22Ga0137407_112121032 23Ga0164303_101802392 24Ga0182037_117823611 25Ga0187780_100660664 26Ga0187780_110664621 27Ga0066662_100846811 28Ga0066662_123286182 29Ga0210399_101068104 30Ga0210404_108768951 31Ga0210394_100386965 32Ga0209240_10571503 33Ga0209686_10020661 34Ga0209154_10028838 35Ga0209074_100468043 36Ga0209526_104598351 37Ga0318494_106505161 38Ga0307477_105277062 39Ga0307475_101132101 40Ga0307473_108732591
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.79% β-sheet: 10.26% Coil/Unstructured: 67.95%
Feature Viewer
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF01266	DAO	27.64
PF01370	Epimerase	21.95
PF01408	GFO_IDH_MocA	9.76
PF13231	PMT_2	3.25
PF08241	Methyltransf_11	0.81
PF01609	DDE_Tnp_1	0.81
PF00733	Asn_synthase	0.81
PF13537	GATase_7	0.81
PF13450	NAD_binding_8	0.81
PF01914	MarC	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG2095	Small neutral amino acid transporter SnatA, MarC family	Amino acid transport and metabolism [E]	0.81
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.81
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.81
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.81
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.81
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.81
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.81

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.92 %
Unclassified	root	N/A	30.08 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.92 %
Unclassified	root	N/A	30.08 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.23 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	5.69 %
Unclassified	root	N/A	30.08 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	17.07 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	5.69 %
Unclassified	root	N/A	30.08 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.88 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	5.69 %
Unclassified	root	N/A	30.08 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.25 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.81 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	5.69 %
Unclassified	root	N/A	30.08 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.25 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.81 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	5.69 %
Unclassified	root	N/A	30.08 %

Name	Rank	Taxonomy	Distribution
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.81 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	5.69 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.81 %
Unclassified	root	N/A	30.08 %

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10189908	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300002561\|JGI25384J37096_10238487	Not Available	531	Open in IMG/M
3300002917\|JGI25616J43925_10385669	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300004120\|Ga0058901_1489759	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300004633\|Ga0066395_10004697	All Organisms → cellular organisms → Bacteria	4753	Open in IMG/M
3300005175\|Ga0066673_10069156	All Organisms → cellular organisms → Bacteria	1829	Open in IMG/M
3300005178\|Ga0066688_10813587	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300005179\|Ga0066684_10017522	All Organisms → cellular organisms → Bacteria	3656	Open in IMG/M
3300005180\|Ga0066685_10003068	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	8009	Open in IMG/M
3300005447\|Ga0066689_10006035	All Organisms → cellular organisms → Bacteria	5155	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	1.63%
Terrestrial	Environmental → Terrestrial	98.37%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Sediment	1.63%
Soil	Environmental → Terrestrial → Soil	98.37%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	7.32%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	89.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.63%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.63%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.07%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	21.14%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.63%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.63%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.63%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.06%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	8.13%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.63%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.32%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	13.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.81%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.25%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.81%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.63%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	41.46%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.63%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004120	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF238 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M

Showing 1 to 10 of 96 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_101899082	3300001661	Forest Soil	WGLKQSGIWKKMPLIVVWDATAFVIWLLTFGRNSIRWRNVDYRIREGMLVPVVQAPVQNSSH*
JGI25384J37096_102384871	3300002561	Grasslands Soil	FVIWLLTFGRSSIRWRNVDYRIREGMLVSAAPSPAQNSPQ*
JGI25616J43925_103856692	3300002917	Grasslands Soil	AFVIWLLTFGRNSIRWRNVDYRIREGMLVPAAPSPAQSPPH*
Ga0058901_14897591	3300004120	Forest Soil	WGLKQTGLWKKMPLIVVWDATAFAIWLLTFGRNSIRWRNVDYRIQGGTLLPDVSSPARNSPQ*
Ga0066395_100046971	3300004633	Tropical Forest Soil	FIIWLLSFGRRRIRWRNVDYWIRGGMLVPVEPNQVPNSQR*
Ga0066673_100691561	3300005175	Soil	LRQIGLWKKMPLIIMWDATAFLIWLLTFGRSSIRWRNVDYQIREGMLVPVVQAPIQHSSQ
Ga0066688_108135872	3300005178	Soil	VGAWGLRQSGLWKKLPLIVVWDATAFVIWLLTFGRKSIRWRNVDYRIREGMLVPVVQAPVQNSQ*
Ga0066684_100175225	3300005179	Soil	WFVGAWGMKQHGLWKKMPLIIVWDATAFVIWLLTFGRRRIRWRNVDYRIRDGMLVPVASSSATNSTR*
Ga0066685_100030687	3300005180	Soil	IIMWDATAFLIWLLTFGRSSIRWRNVDYQIREGMLVPVVQAPIQHSSQ*
Ga0066689_100060354	3300005447	Soil	WKKMPLIVVWDATAFLIWLLTFGRNSIRWRDVDYRIREGTLVPAASSSAENSSQ*
Ga0066689_103502751	3300005447	Soil	LPLIVVWDATAFMIWLLTFGRKSIRWRNVDYRIREGMLVPVVQAPVQNSQ*
Ga0070707_1003844962	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VGVWGLHQRGLWKWMPLIVVWDATAFVIWLLTFGRNSIRWRNVDYRIQEGMLVPAAPSPAQSPSQ*
Ga0070732_107576831	3300005542	Surface Soil	LVWDATAFVIWLLTFGRRRIRWRNVDYRIHDGMLVPVAPNPASNLPR*
Ga0066661_100522311	3300005554	Soil	FVIWLLTFGRRRIRWRNVDYRIRDGMLVPVTPNPAPNSWR*
Ga0066661_101287613	3300005554	Soil	LIVVWDATAFVIWLLTFGRSSIRWRNVDYRIREGMLVSAAPSPAQNSPQ*
Ga0066694_100856861	3300005574	Soil	KMMPLIVVWDATAFVIWLLTFGRNSIRWRDVDYRIREGTLVPAASSSAENSSQ*
Ga0066696_101195511	3300006032	Soil	MMPLIVVWDATAFVIWLLTFGRNSIRWRDVDYRIREGTLVPAASSSAENSSQ*
Ga0075019_105796852	3300006086	Watersheds	LIVVWDATAFVIWLLTFGRNSIRWRNVDYRIQGGTLMPDVPSPAQNSPQ*
Ga0079222_100421724	3300006755	Agricultural Soil	AFVIWLLTFGRRRIRWRNVDYRIHDGMLVPVAPNLAGDSSR*
Ga0099791_102439311	3300007255	Vadose Zone Soil	IVVWDATAFVIWLLTFGRNSIRWRNVDYRIREGMLVPAAPSPAQSPPH*
Ga0099793_101239731	3300007258	Vadose Zone Soil	LIVVWDATAFVIWLLTFGRNSIRWRDVDYRIREGMLVPAASSPAQNSPQ*
Ga0099793_105916672	3300007258	Vadose Zone Soil	VAMTWLVAVWGLQQRGPWKMMPLIVVWDATAFVIWLLTFGRNSIRWRDVNYRIREGTLVPAASSSAQNSSQ*
Ga0099794_100192121	3300007265	Vadose Zone Soil	ATAFVIWMLTFGRKSIRWRNVDYRIREGMLVPVVPHPAQTS*
Ga0099794_101852262	3300007265	Vadose Zone Soil	KKMPLIVVWDATAFVIWLLTFGRNSIRWRDVDYRIREGMLVPAASSPAQNSPQ*
Ga0066710_1002723784	3300009012	Grasslands Soil	ATAFMIWLLTFGRKSIRWRNVDYRIREGMLVPVVQAPVQNSQ
Ga0066710_1031466632	3300009012	Grasslands Soil	WFVGAWGMKQHGLWKKMPLIIVWDATAFVIWLLTFGRRRIRWRNVDYRIRDGMLVPMASSSATNSTR
Ga0099829_101402681	3300009038	Vadose Zone Soil	AWGLKQSGLWKKMPLIVVWDATALVIWLLTFGRNSIRWRNVDYRIREGMLVPAAQSPAQSPPQ*
Ga0099828_100692421	3300009089	Vadose Zone Soil	LWKKMPLIVVWDATAFVIWLLTFGRNSIRWRNVDYRIREGMLVPVVQAPAQNSSQ*
Ga0099828_105777492	3300009089	Vadose Zone Soil	SGLWKKMPLIILWDATAFVIWLLTFGRNSIRWRNVDYRIREGMLVPVVQAPVQNSSH*
Ga0099827_105745572	3300009090	Vadose Zone Soil	IGVWGLRQTGLWKKMPLIVVWDAAAFVIWLLTFGRSSIRWRNVDYRIREGMLVPAAPSPAQNSPQ*
Ga0099827_118685431	3300009090	Vadose Zone Soil	WGLRQTGLWKKMPLIIAWDATAFVIWLLTFGRNSIRWRNVDYRIHEGMLVPVVHVPAQNSSQ*
Ga0126376_121726282	3300010359	Tropical Forest Soil	LLPFGSRSIRWPNVDYRIRDGKLVPIAANSASSVSR*
Ga0126372_129720052	3300010360	Tropical Forest Soil	WDATALIIWLLTFGRRRIRWRNVDYRIRDGRLVPMAANPASNASR*
Ga0126378_105154061	3300010361	Tropical Forest Soil	LFLIWDSTAFVIWLLTFGRRRIRWRNVDYRIRDGVLVPIIPNPASNSLN*
Ga0126379_100214531	3300010366	Tropical Forest Soil	FVIWLLTFGRRRIRWRNVDYRIRDGVLVPINPNPASNSLN*
Ga0136449_1035680182	3300010379	Peatlands Soil	WKQMPLIVVWDATAFVIWLLTFGRNSIRWRNVDYRIEGGTLLPATPSAARNSPQ*
Ga0137392_107226841	3300011269	Vadose Zone Soil	IVLWDATAFVIWLLTFGRNSIRWRDVDYRIREGMLVPVIRAPAQNSSH*
Ga0137391_101946291	3300011270	Vadose Zone Soil	KGLWKWMPLIVLWDAAAFVIWLLTFGRSSIRWRNVDYRIQEGMLVPVVQAPAQNSSQ*
Ga0137391_102723982	3300011270	Vadose Zone Soil	GLKQSGLWKKTPLIIIWDATAFVIWLLTFGRSSIRWRNVDYRIREGMLVPVVPNPAQNSSQSFKNSGRAA*
Ga0137391_105587911	3300011270	Vadose Zone Soil	TMPLFIVWDATAFLIWLLTFGRNSIRWRNVDYRIREGMLVPVVQAPVQNSSH*
Ga0137393_104331052	3300011271	Vadose Zone Soil	KMPLIIIWDATAFVIWLLTFGRNSIRWRNVDYRIREGMLVPVVPNPAQNSSQSCKNSGRAA*
Ga0137393_110092711	3300011271	Vadose Zone Soil	KMPLIIVWDATAFVIWLLTFGRRRIRWRNVDYRIRDGMLVPVTTNPASNFHR*
Ga0137393_111824482	3300011271	Vadose Zone Soil	LRQKGLWKWMPLIVLWDAAAFVIWLLTFGRSSIRWRNVDYRIQEGMLVPVVQASAQNSSQ
Ga0137389_112477022	3300012096	Vadose Zone Soil	LWKMMPLIVVWDATAFVVWLLSFGRNRIRWRDVDYRIREGMLVPVAPNPVQNSSQ*
Ga0137389_115662551	3300012096	Vadose Zone Soil	GPWKMMPLIVVWDATAFVIWLLTFGRNSIRWRDVNYRIREGTLVPAASSSAQNSSQ*
Ga0137364_105640722	3300012198	Vadose Zone Soil	WLIGVWGLQQTGLWKKMPLIVVWDATAFVIWLLTFGRSSIRWRNVDYRIREGMLVSAAPSPAQNSPQ*
Ga0137399_116957931	3300012203	Vadose Zone Soil	MPLIVVWDATAFVIWLLTFGRNSIRWRDVDYRIREGMLVPVASSPAQNSPQ*
Ga0137362_103311102	3300012205	Vadose Zone Soil	ATAFVIWLLTFGRNSIRWRDVDYRIREGMLVPAASSPAQNSPQ*
Ga0137362_106937331	3300012205	Vadose Zone Soil	IWLLTFGRNSIRWRNVDYRIREGTLVPVVQAPAQNSSR*
Ga0137381_106754571	3300012207	Vadose Zone Soil	VAMTWLIGVWGLRQTGLWKKMPLIVVWDATAFVIWLLTFGRSSIRWRNVDYRIREGMLVPAPPSPAQNSPQ*
Ga0137370_102079141	3300012285	Vadose Zone Soil	LLTFGRNSIRWRDVDYRIREGTLVPAASSSAQNSSP*
Ga0137384_100551193	3300012357	Vadose Zone Soil	VAMTWLVAVWGLQQRGPWKMMPLIVVWDATAFVIWLLTFGRNSIRWRDVDYRIREGTLVPAASSSAQNSSQ*
Ga0137360_113799992	3300012361	Vadose Zone Soil	VICDATAFVIWLLTFGRNSIRWRNVDYRIEGGTLLPAVPSSARNSPQ*
Ga0137361_100885764	3300012362	Vadose Zone Soil	LHQSGLWKKMPLIILWDATAFVIWLLTFGRNSIRWRNVDYRIREGMLVPVVQAPVQNSSH
Ga0137390_100382601	3300012363	Vadose Zone Soil	WDATAFVIWLLTFGRNSIRWRNVDYRIREGMLVPVVQAPAQNSSQ*
Ga0137358_105290542	3300012582	Vadose Zone Soil	LTFGRNSIRWRNVDYRIREGMLVPVVQAPVQGSSQ*
Ga0137396_105461692	3300012918	Vadose Zone Soil	WGLKQSGLWKKVPLIFVWDATEFVIWLLTFGRTSIRWRNVDYRIRGGMLVPVVPHPAQNSSQS*
Ga0137396_109939801	3300012918	Vadose Zone Soil	IWLLTFGRSSIRWRNVDYRIREGTLVPVVQAPAQNSSR*
Ga0137394_100500101	3300012922	Vadose Zone Soil	PLFIVWDATAFLIWLLTFGRNSIRWRNVDYRIREGMLVPVVQAPVQNSSH*
Ga0137419_106213282	3300012925	Vadose Zone Soil	WKKLPLIFVWDVTAFVIWLLTFGRKSIRWRNVDYRIREGMLVPVVPQPAQNSSQS*
Ga0137419_114684421	3300012925	Vadose Zone Soil	QTGLWKKMPLIVIWDATAFVIWLLTFGRNSIRWRNVDYRIREGMLVPVAPTPAQHSPQ*
Ga0137407_112121032	3300012930	Vadose Zone Soil	LWKWMPLIVVWDATAFVIWLLTFGRNSIRWRNVDYRIQEGMLVPASPSPAQSHPQ*
Ga0137410_101858823	3300012944	Vadose Zone Soil	VWGLKQTGLWKKLPLIFVWDATAFVIWMLTFGRKSIRWRNVDYRIREGMLVPVVPHPAHNSSQS*
Ga0164303_101802392	3300012957	Soil	KAPLIFVWDATALVIWLLTFGRKSIRWRDVDYRVREGMLVPVVPHPAQNSSQS*
Ga0134087_101063051	3300012977	Grasslands Soil	KMMPLIVVWDATAFVIWLLTFGRNSIRWRDVDYRIREGTLVPAASSSA*
Ga0134079_100007021	3300014166	Grasslands Soil	VVWDATAFVIWLLTFGRNSIRWRDVDYRIREGTLVPAASSSAQNSSP*
Ga0137411_10782732	3300015052	Vadose Zone Soil	WDATAFVIWMLTFGRKSIRWRNVDYRIREGMLVPVVPHPAHNSSQS*
Ga0137411_10907792	3300015052	Vadose Zone Soil	VIWMLTFGRKSIRWRNVDYRIREGMLVPVVPHPAHNSSQS*
Ga0137420_14198051	3300015054	Vadose Zone Soil	IFVWDATAFVIWMLTFGRKSIRWRNVDYRIREGMLVPVVPHPAHNSSQS*
Ga0137412_101180393	3300015242	Vadose Zone Soil	VWGLKQSGLWRTMPLFIVWDATAFLIWLLTFGRNSIRWRNVDYRIREGMLVPVVQAPAQNSSH*
Ga0182037_117823611	3300016404	Soil	QRALWRAMPLVLVWDATAFVIWLLTFGRRRIRWRSVDYRIRDGMLVPEAPNSPTNSPP
Ga0187780_100660664	3300017973	Tropical Peatland	FVIWLLTFGRRNIRWRNVDYRIRDGMLVPVAPNPAQNSAR
Ga0187780_110664621	3300017973	Tropical Peatland	WGLKQPGTWKRMPLFLVWDATAFVIWLLTFGRRNIRWRNVDYRIRNGMLVPLKPSAT
Ga0066662_100846811	3300018468	Grasslands Soil	FVWDATALVIWLLTFGRRRIRWRNVDYRIRDGMLVPVPSHPASNSAR
Ga0066662_123286182	3300018468	Grasslands Soil	VAMTWLIGVWGLQQKGLWKWMPLIVVWDATAFVIWLLSFGRSRIRWRNVDYRIQEGMLVPAAPSPAQSPPQ
Ga0179592_100009521	3300020199	Vadose Zone Soil	AFVIWLLTFGRNSIRWRDVDYRIREGMLVPAASSPAQNSPQ
Ga0179592_102876991	3300020199	Vadose Zone Soil	LLTFGRSSIRWRDVDYRIHEGMLVPVASSPAQNSPQ
Ga0210407_106485581	3300020579	Soil	LTFGRSSIRWRNVDYQIRGGMLVPVVPNPAQNSSQ
Ga0210399_101068104	3300020581	Soil	VVWDLTAFVIWLLTFGRKNIRWRNVDYRIRDGMLVPVVPNPVENSTQSSIG
Ga0210404_108768951	3300021088	Soil	GLKQTGLWKKMPLIVVWDATAFVIWVLTFGRNSIRWRNVDYRIQEGMLVPVAQSPVQNAH
Ga0179584_12760831	3300021151	Vadose Zone Soil	PLIVVWDATAFVIWLLTFGRSSIRWRNVDYRIREGMLVPAAPSPAQNSPQ
Ga0210389_109298072	3300021404	Soil	LTAFVIWLLTFGRKNIRWRNVDYRIRDGMLVPVVPNPVENSTQSSIG
Ga0210394_100386965	3300021420	Soil	IVVWDATAFVIWLLTFGRNSIRWRNVDYRIQEGMLVPATSSPAQNSTQ
Ga0210394_109900122	3300021420	Soil	IWLLTFGRRNIRWRNVDYRIRDGMLVPVAPNPAQNSAR
Ga0210409_107776691	3300021559	Soil	WGLHQTGLWKKMPLIVVWDATAFVIWLLTFGRNSIRWRNVDYRIREGMLVPAAQSPAQNSPQ
Ga0242648_10927371	3300022506	Soil	MPLIVVWDATAFVIWLLTFGRNSIRWRDVDYRIREGMLVPAASTPAQNSPQ
Ga0137417_10902962	3300024330	Vadose Zone Soil	GVWGLQQSGLWKKMPLIVVWDATAFVIWLLTFGRNSIRWRDVDYRIREGMLVPAASSPAQNSPQ
Ga0137417_11517871	3300024330	Vadose Zone Soil	DATAFVIWLLTFGRSSIRWRNVDYRIREGTLVPVVQAPAQNSSR
Ga0137417_11994761	3300024330	Vadose Zone Soil	VWGLQQSGLWKKMPLIVVWDATAFVIWLLTFGRNSIRWRDVDYRIREGMLVPAASSPAQNSPQ
Ga0137417_11994772	3300024330	Vadose Zone Soil	WGLQQSGLWKKMPLIVVWDATAFVIWLLTFGRNSIRWRDVDYRIREGMLVPAASSPAQNSPQ
Ga0137417_13274922	3300024330	Vadose Zone Soil	GGLWKKMPLIVVWDATAFVIWLLTFGRSSIRWRDVDYRIREGMLVPAASSPAQNSPQ
Ga0209238_10902981	3300026301	Grasslands Soil	KMMPLIVVWDATAFVIWLLTFGRNSIRWRDVDYRIREGTLVPAASSSAENSSQ
Ga0209240_10571503	3300026304	Grasslands Soil	KQGSLWKQMPLIIVWDATAFMIWLLTFGRNSIRWRNVDYRIREGTLVPVVQAPAQNSSR
Ga0209761_13109641	3300026313	Grasslands Soil	DATAFVIWLLTFGRSSIRWRNVDYRIREGMLVSAAPSPAQNSPQ
Ga0209268_11195112	3300026314	Soil	MPLIVVWDATAFVIWLLTFGRNSIRWRDVDYRIREGTLVPAASSSAENSSQ
Ga0209686_10020661	3300026315	Soil	MPLIVVWDATAFVIWLLTFGRRRIRWRNVDYRIRDGMLVPIAPSPVQNSPR
Ga0209154_10028838	3300026317	Soil	VWDAMAFLIWLLTFGRRRIRWRNVDYRIRDGMLVPVTPNPAPNSLR
Ga0209803_10276121	3300026332	Soil	PLIVVWDATAFVIWLLTFGRNSIRWRDVDYRIREGTLVPAASSSAENSSQ
Ga0209158_13680141	3300026333	Soil	WDATAFLIWLLTFGRSSIRWRNVDYQIREGMLVPVVQAPIQHSSQ
Ga0209377_10670963	3300026334	Soil	QIGLWKKMPLIIMWDATAFLIWLLTFGRSSIRWRNVDYQIREGMLVPVVQAPIQHSSQ
Ga0209807_11865771	3300026530	Soil	VAMTWLVAVWGLQQRGPWKMMPLIVVWDATAFVIWLLTFGRNSIRWRDVDYRIREGTLVPAASSSAQNSSQ
Ga0209156_100297053	3300026547	Soil	VAVWGLQQRGPWKMMPLVVVWDATAFVIWLLTFGRNSIRWRDVDYRIREGTLVPAASSSAQNSSQ
Ga0209648_108376472	3300026551	Grasslands Soil	GLHQSGLWKKMPLIILWDATAFVIWLLTFGRNSIRWRNVDYRIREGMLVPVVQAPVQNSS
Ga0208997_10713392	3300027181	Forest Soil	LIVVWDATAFVIWLLTFGRNSIRWRNIDYRIQEGMLVPAAPSPAQSHPQ
Ga0208990_10860971	3300027663	Forest Soil	WKKMPLIVVWDATAFVIWLLTFGRNSIRWRNVDYRIEGGTLLPAVPSSARNSPQ
Ga0209074_100468043	3300027787	Agricultural Soil	LIIVWDATAFVIWLLTFGRRRIRWRNVDYRIHDGMLVPVAPNLAGDSSR
Ga0209180_101695981	3300027846	Vadose Zone Soil	IWLLTFGRNSIRWRNVDYRIREGMLVPVVQAPAQNSSQ
Ga0209283_100935233	3300027875	Vadose Zone Soil	LWKKMPLIVVWDATAFVIWLLTFGRNSIRWRNVDYRIREGMLVPVVQAPAQNSSQ
Ga0209067_101365291	3300027898	Watersheds	IWLLTFGRKSIRWRNVDYRIREGMLVPVVQTPAQNSSH
Ga0209526_104598351	3300028047	Forest Soil	KKMPLIVVWDATAFIIWLLTFGRNSIRWRNVDYRIQEGMLVPVAANPGQSSSESPIG
Ga0073994_100742171	3300030991	Soil	FVIWLLTFGRNSIRWRDVDYRIREGMLVPAASSPAQNSPQ
Ga0307469_102781691	3300031720	Hardwood Forest Soil	FVIWLLTFGRKSIRWRNVDYRIREGKLVPVVPHPAQTS
Ga0318494_106505161	3300031751	Soil	TWLVGAWGLQQRGLWKKMPLVIFWDASAFVIWLLTFGRRRIRWRNVDYRIRDGMLVPVAPNPASDSPR
Ga0307477_105277062	3300031753	Hardwood Forest Soil	ATAFVIWLLTFGRKNIRWRNVDYRIRDGMLVRVAPNPAQDSR
Ga0307475_101132101	3300031754	Hardwood Forest Soil	LRQSGLWKQMPLIVVWDAAAFVIWLLTFGRSSIRWRDVDYRIHEGMLVPVASSPAQNSPQ
Ga0307475_107685601	3300031754	Hardwood Forest Soil	TAFVIWLLTFGRSSIRWRNVDYRIREGMLVPVVQAPAHNSSQ
Ga0318568_104081701	3300031819	Soil	ITWLVGAWGLQQRGLWKKMPLVIFWDASAFVIWLLTFGRRRIRWRNVDYRIRDGMLVPVAPNPASDSPR
Ga0307473_108732591	3300031820	Hardwood Forest Soil	ATAFVIWVLTFGRKNIRWRNVDYRIREGMLVPIVQAPAQNSSN
Ga0307473_111229822	3300031820	Hardwood Forest Soil	AFVIWLLTFGRKSIRWRNVDYRIREGMLVPVVPQPAQNSSQS
Ga0307473_115420042	3300031820	Hardwood Forest Soil	IFVWDATAFVIWLLTFGRKSIRWRNVDYRIREGMLVPVVPHPAHNSSQS
Ga0307478_113570122	3300031823	Hardwood Forest Soil	LLTFGRKSIRWRNVDYRIREGMLVPVAQTPAQNSSD
Ga0311301_117096972	3300032160	Peatlands Soil	WKQMPLIVVWDATAFVIWLLTFGRNSIRWRNVDYRIEGGTLLPATPSAARNSPQ
Ga0307472_1016521991	3300032205	Hardwood Forest Soil	LIVVWDATAFVNWLLTFGRNSIRWRDVDYQIREGTLVPAASSSAQNSSQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069985

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences