Metagenome / Metatranscriptome Family F069858

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069858
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	43 residues
Representative Sequence	MANKNGRKGSQFETDVMKWLRNAGAMAERLTKAGAKDEGDMV
Number of Associated Samples	99
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	87.70 %
% of genes near scaffold ends (potentially truncated)	97.56 %
% of genes from short scaffolds (< 2000 bps)	83.74 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (48.780 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (26.016 % of family members)
Environment Ontology (ENVO)	Unclassified (54.472 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (62.602 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.86% β-sheet: 0.00% Coil/Unstructured: 57.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF13481	AAA_25	18.70
PF03796	DnaB_C	6.50
PF02467	Whib	4.07
PF12705	PDDEXK_1	3.25
PF01370	Epimerase	1.63
PF01807	zf-CHC2	0.81
PF01402	RHH_1	0.81
PF09250	Prim-Pol	0.81
PF04545	Sigma70_r4	0.81
PF00227	Proteasome	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	6.50
COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	Replication, recombination and repair [L]	6.50
COG0358	DNA primase (bacterial type)	Replication, recombination and repair [L]	0.81
COG0638	20S proteasome, alpha and beta subunits	Posttranslational modification, protein turnover, chaperones [O]	0.81
COG3484	Predicted proteasome-type protease	Posttranslational modification, protein turnover, chaperones [O]	0.81
COG5405	ATP-dependent protease HslVU (ClpYQ), peptidase subunit	Posttranslational modification, protein turnover, chaperones [O]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.22 %
Unclassified	root	N/A	48.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.78 %
Viruses	superkingdom	All Organisms → Viruses	41.46 %
cellular organisms	root	All Organisms → cellular organisms	9.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.78 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	21.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.51 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	9.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.78 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	21.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.51 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	9.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.78 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	21.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.51 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.78 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	21.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.51 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.51 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	13.01 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	6.50 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	4.07 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.51 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	13.01 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	6.50 %
Freshwater phage uvFW-CGR-AMD-COM-C403	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403	4.07 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.51 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	13.01 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	6.50 %
Freshwater phage uvFW-CGR-AMD-COM-C403	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403	4.07 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	19.51 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	13.01 %
Nocardioides massiliensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides massiliensis	6.50 %
Freshwater phage uvFW-CGR-AMD-COM-C403	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403	4.07 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000756\|JGI12421J11937_10175734	Not Available	513	Open in IMG/M
3300001950\|GOS2227_1054146	Not Available	1097	Open in IMG/M
3300002161\|JGI24766J26685_10054120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	896	Open in IMG/M
3300002408\|B570J29032_109459246	Not Available	780	Open in IMG/M
3300003497\|JGI25925J51416_10079474	Not Available	810	Open in IMG/M
3300005417\|Ga0068884_1489813	All Organisms → Viruses → Predicted Viral	1326	Open in IMG/M
3300005419\|Ga0068883_1538883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	870	Open in IMG/M
3300005420\|Ga0068879_1451259	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	800	Open in IMG/M
3300005517\|Ga0070374_10350744	Not Available	745	Open in IMG/M
3300005517\|Ga0070374_10433254	Not Available	659	Open in IMG/M
3300005525\|Ga0068877_10148721	All Organisms → Viruses → Predicted Viral	1433	Open in IMG/M
3300005527\|Ga0068876_10724495	Not Available	530	Open in IMG/M
3300005528\|Ga0068872_10402790	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	744	Open in IMG/M
3300005565\|Ga0068885_1855659	All Organisms → Viruses → Predicted Viral	1304	Open in IMG/M
3300005581\|Ga0049081_10158330	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	826	Open in IMG/M
3300005582\|Ga0049080_10099988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides massiliensis	987	Open in IMG/M
3300006802\|Ga0070749_10007721	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7029	Open in IMG/M
3300007304\|Ga0102689_1491932	All Organisms → Viruses → Predicted Viral	1318	Open in IMG/M
3300007321\|Ga0102692_1008780	All Organisms → Viruses → Predicted Viral	1328	Open in IMG/M
3300007523\|Ga0105052_10016156	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6091	Open in IMG/M
3300007523\|Ga0105052_10425251	Not Available	868	Open in IMG/M
3300007540\|Ga0099847_1028851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides massiliensis	1786	Open in IMG/M
3300008107\|Ga0114340_1263161	Not Available	518	Open in IMG/M
3300008116\|Ga0114350_1197143	Not Available	500	Open in IMG/M
3300008117\|Ga0114351_1140025	All Organisms → Viruses → Predicted Viral	1832	Open in IMG/M
3300008120\|Ga0114355_1008486	Not Available	7109	Open in IMG/M
3300008120\|Ga0114355_1153695	All Organisms → Viruses → Predicted Viral	1446	Open in IMG/M
3300008266\|Ga0114363_1154733	All Organisms → Viruses → Predicted Viral	1136	Open in IMG/M
3300008266\|Ga0114363_1212176	Not Available	583	Open in IMG/M
3300008266\|Ga0114363_1226285	Not Available	549	Open in IMG/M
3300008266\|Ga0114363_1247690	Not Available	503	Open in IMG/M
3300008267\|Ga0114364_1122399	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403	771	Open in IMG/M
3300008450\|Ga0114880_1092033	Not Available	1189	Open in IMG/M
3300008450\|Ga0114880_1214368	Not Available	633	Open in IMG/M
3300008450\|Ga0114880_1277776	Not Available	503	Open in IMG/M
3300009082\|Ga0105099_10283990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides massiliensis	967	Open in IMG/M
3300009082\|Ga0105099_10977899	Not Available	538	Open in IMG/M
3300009158\|Ga0114977_10776858	Not Available	505	Open in IMG/M
3300009163\|Ga0114970_10060194	Not Available	2427	Open in IMG/M
3300009163\|Ga0114970_10585954	Not Available	601	Open in IMG/M
3300009165\|Ga0105102_10187246	All Organisms → Viruses → Predicted Viral	1028	Open in IMG/M
3300009165\|Ga0105102_10563182	Not Available	626	Open in IMG/M
3300009180\|Ga0114979_10266962	All Organisms → Viruses → Predicted Viral	1022	Open in IMG/M
3300009183\|Ga0114974_10089841	All Organisms → Viruses → Predicted Viral	1991	Open in IMG/M
3300009469\|Ga0127401_1019747	All Organisms → Viruses → Predicted Viral	1980	Open in IMG/M
3300009474\|Ga0127390_1003011	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5437	Open in IMG/M
3300010157\|Ga0114964_10283156	Not Available	787	Open in IMG/M
3300010885\|Ga0133913_11361387	Not Available	1808	Open in IMG/M
3300010970\|Ga0137575_10002234	All Organisms → Viruses → Predicted Viral	3817	Open in IMG/M
3300011268\|Ga0151620_1084892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1009	Open in IMG/M
3300013372\|Ga0177922_11330954	Not Available	707	Open in IMG/M
3300017701\|Ga0181364_1003321	Not Available	2853	Open in IMG/M
3300017723\|Ga0181362_1121224	Not Available	512	Open in IMG/M
3300017736\|Ga0181365_1012796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2094	Open in IMG/M
3300017747\|Ga0181352_1194474	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	523	Open in IMG/M
3300017777\|Ga0181357_1206775	Not Available	698	Open in IMG/M
3300017784\|Ga0181348_1208257	Not Available	697	Open in IMG/M
3300017785\|Ga0181355_1028607	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2410	Open in IMG/M
3300019122\|Ga0188839_1020096	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	697	Open in IMG/M
3300019784\|Ga0181359_1132212	Not Available	878	Open in IMG/M
3300019784\|Ga0181359_1175151	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	714	Open in IMG/M
3300020220\|Ga0194119_10745574	Not Available	586	Open in IMG/M
3300020603\|Ga0194126_10732560	Not Available	573	Open in IMG/M
3300021519\|Ga0194048_10359219	Not Available	518	Open in IMG/M
3300021963\|Ga0222712_10668921	Not Available	589	Open in IMG/M
3300022179\|Ga0181353_1086100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides massiliensis	788	Open in IMG/M
3300022190\|Ga0181354_1130198	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	802	Open in IMG/M
3300022190\|Ga0181354_1169023	Not Available	672	Open in IMG/M
3300022198\|Ga0196905_1024032	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1882	Open in IMG/M
3300022407\|Ga0181351_1113212	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1029	Open in IMG/M
3300024480\|Ga0255223_1005385	All Organisms → Viruses → Predicted Viral	1845	Open in IMG/M
3300024531\|Ga0255228_1003408	All Organisms → Viruses → Predicted Viral	2551	Open in IMG/M
3300024566\|Ga0256309_1010868	All Organisms → Viruses → Predicted Viral	2501	Open in IMG/M
3300025647\|Ga0208160_1156444	Not Available	547	Open in IMG/M
3300025896\|Ga0208916_10386184	Not Available	611	Open in IMG/M
3300027608\|Ga0208974_1160402	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	565	Open in IMG/M
3300027659\|Ga0208975_1199502	Not Available	535	Open in IMG/M
3300027689\|Ga0209551_1082629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides massiliensis	1047	Open in IMG/M
3300027733\|Ga0209297_1250416	Not Available	680	Open in IMG/M
3300027734\|Ga0209087_1043829	Not Available	2075	Open in IMG/M
3300027741\|Ga0209085_1216642	Not Available	769	Open in IMG/M
3300027749\|Ga0209084_1329429	Not Available	566	Open in IMG/M
3300027756\|Ga0209444_10027489	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2751	Open in IMG/M
3300027756\|Ga0209444_10134465	Not Available	965	Open in IMG/M
3300027759\|Ga0209296_1276991	Not Available	677	Open in IMG/M
3300027772\|Ga0209768_10292248	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403	688	Open in IMG/M
3300027793\|Ga0209972_10373968	Not Available	611	Open in IMG/M
3300027806\|Ga0209985_10405470	Not Available	590	Open in IMG/M
3300028025\|Ga0247723_1023041	Not Available	2065	Open in IMG/M
3300028025\|Ga0247723_1046924	All Organisms → Viruses → Predicted Viral	1254	Open in IMG/M
3300028027\|Ga0247722_10107474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides massiliensis	1028	Open in IMG/M
3300028108\|Ga0256305_1168206	Not Available	520	Open in IMG/M
3300029930\|Ga0119944_1004198	All Organisms → Viruses → Predicted Viral	2370	Open in IMG/M
3300031578\|Ga0307376_10376447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides massiliensis	937	Open in IMG/M
3300031746\|Ga0315293_11038740	Not Available	581	Open in IMG/M
3300031758\|Ga0315907_10022651	Not Available	5798	Open in IMG/M
3300031758\|Ga0315907_10428944	All Organisms → Viruses → Predicted Viral	1060	Open in IMG/M
3300031784\|Ga0315899_10938978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides massiliensis	776	Open in IMG/M
3300031784\|Ga0315899_10963670	Not Available	762	Open in IMG/M
3300031786\|Ga0315908_11579011	Not Available	509	Open in IMG/M
3300031787\|Ga0315900_10243867	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1542	Open in IMG/M
3300031857\|Ga0315909_10303124	Not Available	1193	Open in IMG/M
3300031951\|Ga0315904_10275614	All Organisms → Viruses → Predicted Viral	1593	Open in IMG/M
3300031951\|Ga0315904_10312309	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1467	Open in IMG/M
3300031951\|Ga0315904_10318481	All Organisms → Viruses → Predicted Viral	1448	Open in IMG/M
3300031951\|Ga0315904_11169424	Not Available	593	Open in IMG/M
3300031963\|Ga0315901_10566104	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	870	Open in IMG/M
3300031963\|Ga0315901_11034370	Not Available	570	Open in IMG/M
3300032093\|Ga0315902_10181399	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2143	Open in IMG/M
3300032116\|Ga0315903_10148878	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2153	Open in IMG/M
3300032116\|Ga0315903_10942740	Not Available	611	Open in IMG/M
3300033418\|Ga0316625_101121066	Not Available	713	Open in IMG/M
3300033981\|Ga0334982_0371013	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403	657	Open in IMG/M
3300034012\|Ga0334986_0524502	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403	577	Open in IMG/M
3300034020\|Ga0335002_0666261	Not Available	528	Open in IMG/M
3300034022\|Ga0335005_0178407	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1331	Open in IMG/M
3300034062\|Ga0334995_0065758	All Organisms → Viruses → Predicted Viral	2878	Open in IMG/M
3300034092\|Ga0335010_0460007	Not Available	679	Open in IMG/M
3300034106\|Ga0335036_0183730	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1463	Open in IMG/M
3300034106\|Ga0335036_0217606	All Organisms → Viruses → Predicted Viral	1313	Open in IMG/M
3300034120\|Ga0335056_0498521	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403	642	Open in IMG/M
3300034122\|Ga0335060_0179722	All Organisms → Viruses → Predicted Viral	1215	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	95.94%
Terrestrial	Environmental → Terrestrial	4.06%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	88.62%
Marine	Environmental → Aquatic → Marine	5.69%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	2.44%
Unclassified	Environmental → Aquatic → Unclassified	1.63%
Soil	Environmental → Terrestrial → Soil	1.63%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	33.33%
Lentic	Environmental → Aquatic → Freshwater → Lentic	31.71%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	13.01%
Coastal	Environmental → Aquatic → Marine → Coastal	4.06%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.25%
River	Environmental → Aquatic → Freshwater → River	3.25%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	2.44%
Ice	Environmental → Aquatic → Freshwater → Ice	1.63%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified	1.63%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.81%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	0.81%
Pond	Environmental → Aquatic → Freshwater → Pond	0.81%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.81%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.81%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.81%
Clay	Environmental → Terrestrial → Soil → Clay	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	32.52%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	30.89%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	13.01%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	4.06%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.25%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	3.25%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	2.44%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	1.63%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified → Unclassified	1.63%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.81%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.81%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Freshwater → Pond → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	26.02%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	13.01%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	9.76%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	8.94%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	8.13%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	4.06%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	4.06%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	3.25%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	3.25%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	3.25%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	2.44%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	1.63%
Meromictic Pond	Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond	1.63%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.81%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.81%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	0.81%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.81%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.81%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.81%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.81%
Aquatic	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic	0.81%
Pond Fresh Water	Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water	0.81%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.81%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000756	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011	Environmental	Open in IMG/M
3300001950	Marine microbial communities from Delaware Bay, New Jersey, USA - GS011	Environmental	Open in IMG/M
3300002161	Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA	Environmental	Open in IMG/M
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental	Open in IMG/M
3300003497	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN	Environmental	Open in IMG/M
3300005417	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005419	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005420	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005517	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)	Environmental	Open in IMG/M
3300005525	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG	Environmental	Open in IMG/M
3300005527	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG	Environmental	Open in IMG/M
3300005528	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG	Environmental	Open in IMG/M
3300005565	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel7S_1600h metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300007304	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300007321	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300007523	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-03	Environmental	Open in IMG/M
3300007540	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG	Environmental	Open in IMG/M
3300008107	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NA	Environmental	Open in IMG/M
3300008116	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA	Environmental	Open in IMG/M
3300008117	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA	Environmental	Open in IMG/M
3300008120	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA	Environmental	Open in IMG/M
3300008266	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA	Environmental	Open in IMG/M
3300008267	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR	Environmental	Open in IMG/M
3300008450	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs	Environmental	Open in IMG/M
3300009082	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009158	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG	Environmental	Open in IMG/M
3300009163	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG	Environmental	Open in IMG/M
3300009165	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009180	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG	Environmental	Open in IMG/M
3300009183	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG	Environmental	Open in IMG/M
3300009469	Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 6m depth; DNA IDBA-UD	Environmental	Open in IMG/M
3300009474	Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 3m depth; DNA IDBA-UD	Environmental	Open in IMG/M
3300010157	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG	Environmental	Open in IMG/M
3300010885	northern Canada Lakes Co-assembly	Environmental	Open in IMG/M
3300010970	Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1, april 2016	Environmental	Open in IMG/M
3300011268	Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555	Environmental	Open in IMG/M
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental	Open in IMG/M
3300017701	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N	Environmental	Open in IMG/M
3300017723	Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N	Environmental	Open in IMG/M
3300017736	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N	Environmental	Open in IMG/M
3300017747	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N	Environmental	Open in IMG/M
3300017777	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017784	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental	Open in IMG/M
3300019122	Metatranscriptome of marine microbial communities from Baltic Sea - GS677_0p1	Environmental	Open in IMG/M
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental	Open in IMG/M
3300020220	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015018 Mahale Deep Cast 100m	Environmental	Open in IMG/M
3300020603	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015035 Kigoma Deep Cast 150m	Environmental	Open in IMG/M
3300021519	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m	Environmental	Open in IMG/M
3300021963	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657D	Environmental	Open in IMG/M
3300022179	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N	Environmental	Open in IMG/M
3300022190	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N	Environmental	Open in IMG/M
3300022198	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)	Environmental	Open in IMG/M
3300022407	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D	Environmental	Open in IMG/M
3300024480	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepC_0h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024531	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepA_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024566	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepA_8d (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025647	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025896	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300027608	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)	Environmental	Open in IMG/M
3300027659	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)	Environmental	Open in IMG/M
3300027689	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (SPAdes)	Environmental	Open in IMG/M
3300027733	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027734	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027741	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027749	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027756	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)	Environmental	Open in IMG/M
3300027759	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027772	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)	Environmental	Open in IMG/M
3300027793	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)	Environmental	Open in IMG/M
3300027806	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG (SPAdes)	Environmental	Open in IMG/M
3300028025	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC	Environmental	Open in IMG/M
3300028027	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC	Environmental	Open in IMG/M
3300028108	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepB_8d (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029930	Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727	Environmental	Open in IMG/M
3300031578	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2	Environmental	Open in IMG/M
3300031746	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20	Environmental	Open in IMG/M
3300031758	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123	Environmental	Open in IMG/M
3300031784	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112	Environmental	Open in IMG/M
3300031786	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124	Environmental	Open in IMG/M
3300031787	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114	Environmental	Open in IMG/M
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental	Open in IMG/M
3300031951	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120	Environmental	Open in IMG/M
3300031963	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116	Environmental	Open in IMG/M
3300032093	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117	Environmental	Open in IMG/M
3300032116	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033981	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011	Environmental	Open in IMG/M
3300034012	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027	Environmental	Open in IMG/M
3300034020	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055	Environmental	Open in IMG/M
3300034022	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058	Environmental	Open in IMG/M
3300034062	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045	Environmental	Open in IMG/M
3300034092	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069	Environmental	Open in IMG/M
3300034106	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131	Environmental	Open in IMG/M
3300034120	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172	Environmental	Open in IMG/M
3300034122	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2014-rr0181	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12421J11937_101757342	3300000756	Freshwater And Sediment	MANPNGRKGSQFETDVMRWLRNAGAFCEKLALAGKA
GOS2227_10541465	3300001950	Marine	LKRGLKISNPNGRKGSGFEIAIMKFLRTLGIFVERLVKAGKNDEG
JGI24766J26685_100541201	3300002161	Freshwater And Sediment	MANKNGRKGSQFETDVMKWLRNAGVMAERLTKAGAKDEGDMVVIISGET
B570J29032_1094592461	3300002408	Freshwater	MANPNGRKGAAFETAVLKFFRSAGVLAERLTKAGARDEGD
JGI25925J51416_100794741	3300003497	Freshwater Lake	MANPNGRKGAQFETDVMRWLRSAGALCERLVKAGKNDEGDLVAIIAGKQY
Ga0068884_14898134	3300005417	Freshwater Lake	MANKNGRKGSLFETTVLKWLRSKNVVAERLTKAGAKDEGDIVVMANGKTYIL
Ga0068883_15388833	3300005419	Freshwater Lake	MANKNGRKGSLFETTVLKWLRSKNVVAERLTKAGAKDEGDIV
Ga0068879_14512593	3300005420	Freshwater Lake	MANKNGRKGSLFETTVLKWLRSKNVVAERLTKAGAKDEGDIVVMANGKT
Ga0070374_103507443	3300005517	Freshwater Lake	MANPNGRKGSQFETDVMRWLRSAGALCERLVKAGKHDEGDLVAIIAGKQYI
Ga0070374_104332541	3300005517	Freshwater Lake	MANPNGRKGAQFETDVMRWLRSAGALCERLVKAGKHDEGDLVAIIAGKQYI
Ga0068877_101487211	3300005525	Freshwater Lake	MANKNGRKGSQFETDVMKWLRSKSVIAERLTKAGAKDEGDMVVI
Ga0068876_107244951	3300005527	Freshwater Lake	MANKNGRKGSVFETDVMKWLRGAGVTAERLTKAGA
Ga0068872_104027901	3300005528	Freshwater Lake	MANPNGRKGAQFETDVMRWLRDNNAVAERLTKAGAKDEGDLYVFLQG
Ga0068885_18556594	3300005565	Freshwater Lake	MANKNGRKGSLFETTVLKWLRSKNVVAERLTKAGAKDEGDIVVMA
Ga0049081_101583301	3300005581	Freshwater Lentic	MANPNGRKGAQFETDVMRWLRDNNAVAERLTKAGAKDEGDLYVFL
Ga0049080_100999881	3300005582	Freshwater Lentic	MANSNGRKGSKFETDVLKWLRQMGVLAERLTKAGSKDEGDMVAIIA
Ga0070749_1000772113	3300006802	Aqueous	MANPNGRKGAQFETDVMKWLRSVGAICERLTKAGAK
Ga0102689_14919321	3300007304	Freshwater Lake	MANKNGRKGSLFETTVLKWLRSKNVVAERLTKAGAKDEGDIVVMANGKTYI
Ga0102692_10087804	3300007321	Freshwater Lake	MANKNGRKGSLFETTVLKWLRSKNVVAERLTKAGAKDEGDIVVMANGKTYILE
Ga0105052_100161561	3300007523	Freshwater	MAKNQRIGSKFETDVMRWFRSVGVAAERLTKAGSKDEGDLVVVVAGQ
Ga0105052_104252511	3300007523	Freshwater	MSQYSKAKGAKFETDVMRWFRSAGVLAERLTKAGSKDEGDLVCIIA
Ga0099847_10288515	3300007540	Aqueous	MASKYNRVKGSIFETDVMKWLRKSGVLAERLTKAGSKD
Ga0114340_12631611	3300008107	Freshwater, Plankton	VANPNGRKGSQFETDVMKWLRKMGAMAERLTKAGAKD
Ga0114350_11971433	3300008116	Freshwater, Plankton	MANPNGRKGAQFETDVMKWFRAMGAVCERLTKTGAKDEGDLVAVVAGKT
Ga0114351_11400255	3300008117	Freshwater, Plankton	VANPNGRKGSQFETDVMRFLRSVGLLAERLTKAGSKDEGDIVCVVAG
Ga0114351_11638213	3300008117	Freshwater, Plankton	MANKNGRKGSQFETDVMKWLRKCGVMAERLTKAGAKDEGDMVAIIAGKTYILEL
Ga0114355_10084862	3300008120	Freshwater, Plankton	MANPNGRKGSQFETDVMKWLRKCGVMAERLTKAGAKDEGDMVAIIAGKTYIL*
Ga0114355_11536955	3300008120	Freshwater, Plankton	VANPNGRKGSQFETDVMRFLRSVGLLAERLTKAGSKDEGDIVCVVA
Ga0114363_11547334	3300008266	Freshwater, Plankton	MANPNGRKGAQYETDVMRWFREHEAVAERLTKAGAKDEGDG*
Ga0114363_12121763	3300008266	Freshwater, Plankton	MANPNGRKGALFETDVMKWLRSVGAIAERLTKAGSKDEGDI
Ga0114363_12262852	3300008266	Freshwater, Plankton	MANPNGRKGAQFETDVMKWFRAMGAVCERLTKTGAKDEGDLVAVVAGKTY
Ga0114363_12476903	3300008266	Freshwater, Plankton	MANKNGRKGSQFETDVMKWLRNAGAMAERLTKAGAKDE
Ga0114364_11223991	3300008267	Freshwater, Plankton	MANKNGRKGSQFETDVMKWLRKAGVAAERLTKAGAKDEGDMVAVI
Ga0114880_10920331	3300008450	Freshwater Lake	MANPNGRKGALFETDVMRWLRSVGAIAERLTKAGS
Ga0114880_12143683	3300008450	Freshwater Lake	MANPNGRKGSQFETDVMRFLRSVGLLAERLTKAGSKDEGDIV
Ga0114880_12777761	3300008450	Freshwater Lake	MANPNGRKGAQYETDVMRWFREHEAVAERLTKAGAKDEGDLYVFLQGKTYI
Ga0105099_102839902	3300009082	Freshwater Sediment	MANKNGRKGSQFETDVMKWLRSKSVIAERLTKAGAKDEGDMVVIISGETYIL
Ga0105099_109778992	3300009082	Freshwater Sediment	MANPNGRKGAQFETDVMRWLRSAGALCERLVKAGSADEGDLCAVVAG
Ga0114977_107768581	3300009158	Freshwater Lake	MANKNGRKGSQFETDVMKWLRNKGVIAERLTKAGAKDEGDMVVIVSGET
Ga0114970_1006019410	3300009163	Freshwater Lake	MANPNGRKGALFETAVMKWLRSVGATAERLTKAGSKDEGDIVCIISG
Ga0114970_105859543	3300009163	Freshwater Lake	MANPNGRKGALFETDVMRWLRSVGAMAERLTKAGSKDEGDIVAIVAG
Ga0105102_101872461	3300009165	Freshwater Sediment	MANPNGRKGSQFETDVMKWFRSMGAMAERLTKAGAKDEGDMVVIISGETYILE
Ga0105102_105631822	3300009165	Freshwater Sediment	MANPNGRKGAQFETDVMRWLRSAGALCERLVKAGKNDE
Ga0114979_102669621	3300009180	Freshwater Lake	MANKNGRKGSQFETDVMKWLRNAGAMAERLTKAGAKD
Ga0114974_100898415	3300009183	Freshwater Lake	MANKNGRKGSQFETDVMKWFRKAGIIAERLTKAGAKDEGDMV
Ga0127401_10197471	3300009469	Meromictic Pond	LANPNGRKGAQFETDVMKWLRKAGAMAERLTKAGAKDEGDMV
Ga0127390_100301111	3300009474	Meromictic Pond	MANPNGRKGAQFETDVMKWFRAMGAVCERLTKTGAKDEGDLV
Ga0114964_102831564	3300010157	Freshwater Lake	MANPNGRKGAQYETDVMRWLRSAGALCERLVRAGKADEGDLVAIIAG
Ga0133913_113613875	3300010885	Freshwater Lake	LANPNGRKGAAFETAVMKWLRSVGVLAERLTKTGAKD
Ga0137575_100022349	3300010970	Pond Fresh Water	MANPNGRKGSKFETDVLKWLRQTKDVLAERLTKAGAKDEGDLV
Ga0151620_10848923	3300011268	Freshwater	LANKNGRKGSVFETDVMKWLRGAGVTAERLTKAGAKD
Ga0177922_113309543	3300013372	Freshwater	VANPNGRKGALFETSVMKWLREHGVSAERLTKAGS
Ga0181364_10033211	3300017701	Freshwater Lake	MANPNGRKGALFETAVMKWLRSVGANAERLSKAGSNDEGDI
Ga0181362_11212241	3300017723	Freshwater Lake	MANPNGRKGSQFETDVMRWLRSAGALCERLVKAGKHDEGDLVAIIAGKQYIL
Ga0181365_10127961	3300017736	Freshwater Lake	MANKNGRKGSLFETTVLKWLRSKSVVAERLTKAGAKDEGDIVVMVNGKTYILE
Ga0181352_11944742	3300017747	Freshwater Lake	MANPNGRKGSKFEIDVLKFFRKMGLWIERLTKAGA
Ga0181357_12067754	3300017777	Freshwater Lake	MANPNGRKGAQFETDVMKWFRAMGAVCERLTKTGAKD
Ga0181348_12082571	3300017784	Freshwater Lake	MANPNGRKGAAFETAVLKFFRAAGVVAERLTKAGARDEGD
Ga0181355_10286079	3300017785	Freshwater Lake	MANPNGRKGSQFETDVMRWLRSAGALCERLVKAGKHDEGDLVAIIAG
Ga0188839_10200961	3300019122	Freshwater Lake	MANPNGRKGAQFETDVMRWLRDNNAVAERLTKAGA
Ga0181359_11322124	3300019784	Freshwater Lake	MANPNGRKGSQFETDVMRWLRSAGALCERLVKAGKHDEGDLVAII
Ga0181359_11751513	3300019784	Freshwater Lake	MANKNGRKGSQFETDVMKWLRSKGVIAERLTKAGAKD
Ga0194119_107455744	3300020220	Freshwater Lake	MANPSGRKGAQFETDVMKWFRTMGVICERLTKVGTKDEGDLVATIA
Ga0194126_107325601	3300020603	Freshwater Lake	MANPNGRKGAQFETDVMKWFRTMGVICERLTKVGTKDEGDLVATIAGKTYI
Ga0194048_103592193	3300021519	Anoxic Zone Freshwater	MANPNGRKGSKFETDVLKWLRLTKGVLAERLTKAGAKDEGDLVVI
Ga0222712_106689213	3300021963	Estuarine Water	MANPNGRKGALFETDVMRWLRSVGAIAERLTKAGSKDEGDIVAIVA
Ga0181353_10861002	3300022179	Freshwater Lake	MANKNGRKGSQFETDVMKWLRNAGVMAERLTKAGAKDEGDMVVIISGETYILD
Ga0181354_11301981	3300022190	Freshwater Lake	MANPNGRKGAQFETDVMRWLREHEAVAERLTKAGAKDEGDLYVFL
Ga0181354_11690231	3300022190	Freshwater Lake	MANPNGRKGAQFETDVMRWLRDNNAVAERLTKAGAKDEGDL
Ga0196905_10240321	3300022198	Aqueous	MANPNGRKGAQFETDVMKWLRSKGVIAERLTKAGAKD
Ga0181351_11132121	3300022407	Freshwater Lake	MANPNGRKGAQFETDVMRWLRDNEAVAERLTKAGAKDEGDLYVFVRGKT
Ga0255223_10053855	3300024480	Freshwater	MANPNGRKGAQFETDVMRWLRDNNAVAERLTKAGAKD
Ga0255228_10034087	3300024531	Freshwater	MANPNGRKGAQFETDVMRWLRDNNAVAERLTKAGAKDEGDLYVFLQGKTY
Ga0256309_10108681	3300024566	Freshwater	MANPNGRKGAQFETDVMRWLRDNNAVAERLTKAGAKDEGDLY
Ga0208160_11564441	3300025647	Aqueous	MVNKNGRKGSQFETDVMKWLRNAGVMAERLTKAGA
Ga0208916_103861843	3300025896	Aqueous	MANPNGRKGAAFETAVLKFFRAAGVVAERLTKAGARDEGDLVV
Ga0208974_11604021	3300027608	Freshwater Lentic	MANKNGRKGSQFETDVMKWLRSKGVIAERLTKAGAKDEGD
Ga0208975_11995023	3300027659	Freshwater Lentic	MANPNGRKGSQFETDVMKWLRKAGAVAERLTKAGAKDEGDMVCIVAG
Ga0209551_10826291	3300027689	Freshwater Lake	MANKNGRKGSQFETDVMKWLRNAGAMAERLTKAGAKDEGDM
Ga0209297_12504161	3300027733	Freshwater Lake	MANPNGRKGALFETDVMRWLRSVGAIAERLTKAGSKDEGDIVAIV
Ga0209087_10438291	3300027734	Freshwater Lake	MANPNGRKGALFETDVMRWLRSVGAIAERLTKAGSKDEGDIVA
Ga0209085_12166421	3300027741	Freshwater Lake	MANPNGRKGAQFETDVMRWLRAAGALCERLVKAGVN
Ga0209084_13294291	3300027749	Freshwater Lake	VNSMANPNGRKGSQFETDVMKWLRKMGAMAERLTKAGAKDEG
Ga0209444_1002748910	3300027756	Freshwater Lake	MANPNGRKGAQFETDVMRWLRSAGALCERLVKAGKHDEGDLVAI
Ga0209444_101344654	3300027756	Freshwater Lake	MANPNGRKGSQFETDVMRWLRSAGALCERLVKAGKHDEGDLVAI
Ga0209296_12769911	3300027759	Freshwater Lake	VANPNGRKGAQFETDVMRWLRTAGALCERLVKAGKNDEGDLVAIIA
Ga0209768_102922483	3300027772	Freshwater Lake	MANKNGRKGSQFETDVMKWLRNAGAMAERLTKAGAKDEGDMV
Ga0209972_103739681	3300027793	Freshwater Lake	MANPNGRKGAQYETDVMRWFREHEAVAERLTKAGAKDEGDLYV
Ga0209985_104054701	3300027806	Freshwater Lake	MANPNGRKGAQFETDVMRWLRTAGALCERLVKAGKNDEGDLVAIIAG
Ga0247723_10230411	3300028025	Deep Subsurface Sediment	VANPNGRKGALFETSVMKWLREHGVSAERLTKAGSK
Ga0247723_10469243	3300028025	Deep Subsurface Sediment	MANKNGRKGSQFETDVMKWLRSKSVIAERLTKAGAKDEGDMV
Ga0247722_101074741	3300028027	Deep Subsurface Sediment	MANPNGRKGAKFETDVMKWLRDKGVSAERLTKAGAKDEG
Ga0256305_11682061	3300028108	Freshwater	MANPNGRKGAQFETDVMRWLRDNNAVAERLTKAGAKDE
Ga0119944_10041986	3300029930	Aquatic	MANPNGRKGAQFETDVMRWLREHEAVAERLTKAGAKDE
Ga0307376_103764471	3300031578	Soil	MANPNGRKGSQFETDVMKWLRKCGVMAERLTKAGAKDEG
Ga0315293_110387403	3300031746	Sediment	MANKNGRKGSQFETDVMKWLRNAGATAERLTKAGAKDEGDM
Ga0315907_1002265113	3300031758	Freshwater	MANKNGRKGSQFETDVMKWLRNAGVIAERLTKAGAKDEGDMVVIISG
Ga0315907_104289443	3300031758	Freshwater	MANPNGRKGAQFETDVMRWLRDNNAVAERLTKAGAK
Ga0315899_109389781	3300031784	Freshwater	MANKNGRKGSQFETDVMKWLRKAGVAAERLTKAGAKDEGDMVAVIAGETYILE
Ga0315899_109636703	3300031784	Freshwater	VANPNGRKGALFETSVMKWLREHGVSAERLTKAGSKDEG
Ga0315908_115790112	3300031786	Freshwater	MANPNGRKGAQFETDVMRWLRGAGALCERLVKAGKN
Ga0315900_102438675	3300031787	Freshwater	MANPNGRKGAQFETDVMRWLRTAGALCERLVKAGKNDEGD
Ga0315909_103031241	3300031857	Freshwater	MANPNGRKGALFETDVMRWLRSVGAIAERLTKAGSKDEG
Ga0315904_102756141	3300031951	Freshwater	MANPNGRKGAQFETDTMRWLRENEAIAERLTKAGAKDEGDLYVFLK
Ga0315904_103123091	3300031951	Freshwater	MANPNGRKGAQFETDVMRWLRTAGALCERLVKAGKNDEGDL
Ga0315904_103184813	3300031951	Freshwater	MANKNGRKGSQFETDVMKWLRNAGAMAERLTKAGAKDEGDMVVII
Ga0315904_111694243	3300031951	Freshwater	MANPNGRKGSQFETDVMRFLRSVGLLAERLTKAGSKDEGDIVCVVAGNTYI
Ga0315901_105661041	3300031963	Freshwater	MANPNGRKGAQFETDVMRWLRDNNAVAERLTKAGAKDEGDLYVFLQ
Ga0315901_110343702	3300031963	Freshwater	VANPNGRKGAQFETDVMKWLRSMGAVAERLTKAGA
Ga0315902_101813991	3300032093	Freshwater	MANPNGRKGAQFETDVMRWLRGAGALCERLVKAGKHDEGDLVAIIGGKQYI
Ga0315903_101488781	3300032116	Freshwater	MANPNGRKGAQFETDVMRWLRTAGALCERLVKAGKNDEGDLVAVIAG
Ga0315903_109427403	3300032116	Freshwater	VANPNGRKGSQWEIDVLKLFRKIGLWIERLTKAGANDE
Ga0316625_1011210661	3300033418	Soil	LANKNGRKGSQFETDVMKWLRKCGVVAERLTKAGAKDE
Ga0334982_0371013_3_137	3300033981	Freshwater	MANKNGRKGSQFETDVMKWLRSKSVIAERLTKAGAKDEGDMVVII
Ga0334986_0524502_426_575	3300034012	Freshwater	MANKNGRKGSQFETDVMKWLRNAGVMAERLTKAGAKDEGDMVVIISGETY
Ga0335002_0666261_416_526	3300034020	Freshwater	MANPNGRKGALFETAVMKWLRSVGATAERLTKAGSKD
Ga0335005_0178407_1204_1329	3300034022	Freshwater	MANPNGRKGAQFETDVMRWLRGAGALCERLVKAGKNDEGDLV
Ga0334995_0065758_1_126	3300034062	Freshwater	MANKNGRKGSQFETDVMKWLRNAGVMAERLTKAGAKDEGDMV
Ga0335010_0460007_542_679	3300034092	Freshwater	MSNKNGRKGSQFETDVMKWLRNAGAMAERLTKAGAKDEGDMVVIIS
Ga0335036_0183730_2_112	3300034106	Freshwater	MANPNGRKGAQFETDVMRWLRNAGAFCEKLALAGKAD
Ga0335036_0217606_1185_1313	3300034106	Freshwater	MANKNGRKGSQFETDVMKWLRSKSVIAERLTKAGAKDEGDMVV
Ga0335056_0498521_1_126	3300034120	Freshwater	MANKNGRKGSQFETDVMKWLRSKGVIAERLTKAGAKDEGDMV
Ga0335060_0179722_2_121	3300034122	Freshwater	MANKNGRKGSQFETDVMKWLRNAGAMAERLTKAGAKDEGD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069858

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences