Metagenome / Metatranscriptome Family F069831

Overview

Basic Information

• Family ID: F069831
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 123
• Average Sequence Length: 43 residues
• Representative Sequence: MIDPITAFATAQAAIKGVQAAIKMGKDIHAIGGEMMKFFEAKD
• Number of Associated Samples: 83
• Number of Associated Scaffolds: 123

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 80.77 %
• % of genes near scaffold ends (potentially truncated): 20.33 %
• % of genes from short scaffolds (< 2000 bps): 17.89 %
• Associated GOLD sequencing projects: 76
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (80.488 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (27.642 % of family members)
• Environment Ontology (ENVO): Unclassified (70.732 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (72.358 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 54.93%
  β-sheet: 0.00%
  Coil/Unstructured: 45.07%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF16080	Phage_holin_2_3	5.69
PF13884	Peptidase_S74	4.07
PF16778	Phage_tail_APC	3.25
PF13392	HNH_3	3.25
PF13759	2OG-FeII_Oxy_5	2.44
PF07460	NUMOD3	1.63
PF08291	Peptidase_M15_3	0.81
PF00959	Phage_lysozyme	0.81
PF13550	Phage-tail_3	0.81
PF02945	Endonuclease_7	0.81
PF09636	XkdW	0.81

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.49 %
All Organisms	root	All Organisms	19.51 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.49 %
Viruses	superkingdom	All Organisms → Viruses	18.70 %
cellular organisms	root	All Organisms → cellular organisms	0.81 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.49 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	17.07 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.63 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.81 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.49 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	17.07 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.63 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.49 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	17.07 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.63 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.81 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.49 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	17.07 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.63 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.81 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.49 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	13.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.63 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.81 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.49 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	13.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.63 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.81 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300002835|B570J40625_100269324	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1756
3300004771|Ga0007797_1193453	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	513
3300004776|Ga0007800_10018872	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1682
3300007559|Ga0102828_1080456	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	781
3300007606|Ga0102923_1236418	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	565
3300008266|Ga0114363_1003072	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	15627
3300008266|Ga0114363_1028753	All Organisms → Viruses → Predicted Viral	2871
3300009163|Ga0114970_10783382	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	502
3300013005|Ga0164292_10607031	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	706
3300015050|Ga0181338_1041586	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	683
3300017774|Ga0181358_1015805	All Organisms → Viruses → Predicted Viral	3059
3300017780|Ga0181346_1238690	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	640
3300017785|Ga0181355_1214719	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	750
3300027756|Ga0209444_10067476	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1554
3300027756|Ga0209444_10082358	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1359
3300027772|Ga0209768_10224742	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	829
3300027808|Ga0209354_10190444	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	833
3300031758|Ga0315907_10330077	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1246
3300031758|Ga0315907_10726745	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	751
3300031772|Ga0315288_10904793	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	799
3300031951|Ga0315904_10422901	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1200
3300031999|Ga0315274_11426889	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	664
3300032173|Ga0315268_11151856	Not Available	784
3300032177|Ga0315276_11543404	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	690
3300034062|Ga0334995_0049046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3465
3300034168|Ga0335061_0534302	Not Available	595

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.19%
Terrestrial	Environmental → Terrestrial	0.81%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	91.87%
Marine	Environmental → Aquatic → Marine	7.32%
Soil	Environmental → Terrestrial → Soil	0.81%

Type

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	47.97%
Lentic	Environmental → Aquatic → Freshwater → Lentic	35.77%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	8.13%
Coastal	Environmental → Aquatic → Marine → Coastal	2.44%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	2.44%
Unclassified	Environmental → Aquatic → Marine → Unclassified	2.44%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.81%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	42.28%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	34.96%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	8.13%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	5.69%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	2.44%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	2.44%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.63%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.81%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.81%

Habitat

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	27.64%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	26.83%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	8.13%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	7.32%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	5.69%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	5.69%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	4.06%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	1.63%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.63%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.63%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.63%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.63%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	1.63%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.81%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.81%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.81%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.81%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.81%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental
3300004096	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 2)	Environmental
3300004460	Marine viral communities from Newfoundland, Canada BC-1	Environmental
3300004771	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA2.5M	Environmental
3300004774	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA5M	Environmental
3300004776	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA14M	Environmental
3300004805	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA6M	Environmental
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental
3300007559	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541	Environmental
3300007606	Estuarine microbial communities from the Columbia River estuary - metaG 1569-02	Environmental
3300008120	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA	Environmental
3300008266	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA	Environmental
3300008267	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR	Environmental
3300008448	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs	Environmental
3300008450	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs	Environmental
3300009151	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG	Environmental
3300009154	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG	Environmental
3300009155	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG	Environmental
3300009163	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG	Environmental
3300009164	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG	Environmental
3300009180	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG	Environmental
3300009181	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG	Environmental
3300009185	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG	Environmental
3300010158	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_MF_MetaG	Environmental
3300010160	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG	Environmental
3300010334	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (v2)	Environmental
3300010885	northern Canada Lakes Co-assembly	Environmental
3300012017	Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1m	Environmental
3300013005	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaG	Environmental
3300013295	northern Canada Lakes metatranscriptome co-assembly	Environmental
3300015050	Freshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.S.D	Environmental
3300016776	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011505AT metaT (Metagenome Metatranscriptome)	Environmental
3300017707	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.N	Environmental
3300017716	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D	Environmental
3300017736	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N	Environmental
3300017754	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D	Environmental
3300017774	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D	Environmental
3300017777	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N	Environmental
3300017778	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D	Environmental
3300017780	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N	Environmental
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental
3300020556	Freshwater microbial communities from Lake Mendota, WI - 03AUG2012 deep hole epilimnion (SPAdes)	Environmental
3300021602	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L222-5m	Environmental
3300021961	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D	Environmental
3300021962	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D	Environmental
3300022190	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N	Environmental
3300023184	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503	Environmental
3300024346	Whole water sample coassembly	Environmental
3300025616	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA6M (SPAdes)	Environmental
3300025889	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)	Environmental
3300027586	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)	Environmental
3300027659	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)	Environmental
3300027732	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (SPAdes)	Environmental
3300027733	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)	Environmental
3300027734	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG (SPAdes)	Environmental
3300027741	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)	Environmental
3300027749	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)	Environmental
3300027756	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)	Environmental
3300027763	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)	Environmental
3300027772	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)	Environmental
3300027798	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)	Environmental
3300027808	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)	Environmental
3300027963	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)	Environmental
3300027969	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)	Environmental
3300031707	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20	Environmental
3300031758	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123	Environmental
3300031772	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20	Environmental
3300031951	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120	Environmental
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental
3300032046	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40	Environmental
3300032050	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122	Environmental
3300032116	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119	Environmental
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental
3300034061	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028	Environmental
3300034062	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045	Environmental
3300034093	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072	Environmental
3300034168	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Apr2016-rr0183	Environmental
3300034283	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061	Environmental
3300034356	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
B570J40625_1002693245	3300002835	Freshwater	MLDPITAFATAQAAVAGIQKAIKLGKDINGLVGEFGKFFDAKDVVQKAANDNGKKGQ
JGI25908J49247_100035227	3300003277	Freshwater Lake	MIDPITAFAVAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKDKVAKE
Ga0066177_105354952	3300004096	Freshwater Lake	MDPLTAFAVAQGAIKGIQAAIKMGKDIQGITGDVMKFFDAKDKVA
Ga0066222_11096321	3300004460	Marine	MIDPVTAFATAQAAIKGVQAAIKMGKDIHAISADVMKFFDAK
Ga0007797_11934531	3300004771	Freshwater	VIDPVTAFATAQAAIKGVQAAIKMGKDIHAISGEMMRFFEAKDIVQREASK
Ga0007794_100507184	3300004774	Freshwater	MLDPITAFATAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKDVVQKAAS
Ga0007794_100775015	3300004774	Freshwater	MDPITAFAAAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKDVVQRAASK
Ga0007800_100188721	3300004776	Freshwater	MLDPITAFATAQAAIKGVQAAIKMGKDIHAIGGEMMKFFEAKDVVQKAASKPK
Ga0007792_102106252	3300004805	Freshwater	VIDPITAFATAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKDVVQKAAS
Ga0075464_101266531	3300006805	Aqueous	MIDPVTAFATAQAAIKGVQAAIKMGKDIHAVGAEAMKFFEAKD
Ga0102828_10804561	3300007559	Estuarine	MIDPITTAFATAQAAIKGVQAAIKMGKDIHAIGGEMMKFFEAKDIV
Ga0102923_12364183	3300007606	Estuarine	MIDPITAFATAQAAIKGVQAAIKMGKDIHAIGGEMMKFFEAKDIV
Ga0114355_10724586	3300008120	Freshwater, Plankton	MDPITAFAAAQAAVAGIQKAIKLGKDNNGLVGEFGKFFDAKDV
Ga0114363_100307215	3300008266	Freshwater, Plankton	MDPLTAFAVAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKDKVAKEA
Ga0114363_10287534	3300008266	Freshwater, Plankton	MDPITAFAAAQAAVAGIQKAIKLGKDINGLVGQVF*
Ga0114364_10662534	3300008267	Freshwater, Plankton	MIDPITAFAVAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAK
Ga0114364_11104501	3300008267	Freshwater, Plankton	MDPLTAFAVAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAK
Ga0114876_11011861	3300008448	Freshwater Lake	MDPITAFAAAQAAVLGIQKAIKLGKDINGLVGEFGKFFDAR
Ga0114880_10309925	3300008450	Freshwater Lake	MDPITAFAAAQAAVAGIQKAIKLGKDINGLVGEFGKFFDAKDVVQKAANDK
Ga0114962_101450281	3300009151	Freshwater Lake	MIDPITAFATAQAAIKGVQAAIKMGKDIHAIGGEMMKFFEA
Ga0114962_101688061	3300009151	Freshwater Lake	MIDPFTAFATAQAAIKGVQAAIKMGKDIGAISGDL
Ga0114962_102360822	3300009151	Freshwater Lake	MIDPVTAFATAQAAIKGVHVAIKMGKDIHAIGGEMTKFFEAKDIVQREASK
Ga0114962_102548571	3300009151	Freshwater Lake	MLDPITAFATAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKD
Ga0114963_100275644	3300009154	Freshwater Lake	MIDPITAFATAQAAIKGVKAAIALGKDIQAVSGDLMK*
Ga0114963_100371935	3300009154	Freshwater Lake	MIDPITAFATAQAAIKGVQAAIKMGKDIGAISGDLMKFFE
Ga0114963_100696684	3300009154	Freshwater Lake	MIDPITAFATAQAAIKGVQAAIKMGKDIHAIGGEMMKFFEAKD
Ga0114968_100239591	3300009155	Freshwater Lake	MDPITAFAAAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKDVVQ
Ga0114970_101694401	3300009163	Freshwater Lake	MIDPITAFATAQAAIKGVQAAIKMGKDIHAIGGEMMKFFEAKDIVQREA
Ga0114970_107833823	3300009163	Freshwater Lake	MIDPLTAFAVAQGAIKGVQAAIKMGKDINAISGDLMKFFEAKDVVAKAAVKKKP
Ga0114975_100233836	3300009164	Freshwater Lake	MLDPVTAFATAQAAIKGVQAAIKMGKDIHAIGGEMMKFFEAKDVV
Ga0114979_103269383	3300009180	Freshwater Lake	MIDPVTAFATAQAAIKGVQAAIKMGKDIHAIGGEMMRFFEAKDVVQKAASQP
Ga0114969_100882865	3300009181	Freshwater Lake	MIDPLTAFAVAQGAIKGVQAAIKMGKDINAISGDLMKFFEAKDVVAKEAVK
Ga0114969_103005391	3300009181	Freshwater Lake	MVDPVTAFMAAQAALKGIKAAIAMGKDIQGIAGDM
Ga0114971_103364802	3300009185	Freshwater Lake	MIDPVTAFATAQAAIKAVQVAIKMGKDIHAIGGEM
Ga0114960_100925571	3300010158	Freshwater Lake	MIDPITAFATAQAAIKGVKAAIALGKDIQAVSGDLMKFF
Ga0114967_101212225	3300010160	Freshwater Lake	VEEGLIDPVTAFATAQAAIKGVKAAIALGKDIQAVSGDLMNFFEAKDVV
Ga0114967_102827341	3300010160	Freshwater Lake	MIDPLTAFAVAQGAIKGVQAAIKMGKDINAISGDLMKF
Ga0114967_104493231	3300010160	Freshwater Lake	MIDPLTAFAVAQGAIKGVQAAIKMGKDINSISGDLMKF
Ga0136644_100593771	3300010334	Freshwater Lake	MIDPITAFATAQAAIKGVQAAIKMGKDIGAISGDLMK
Ga0136644_102486434	3300010334	Freshwater Lake	VIDPITAFATAQAAIKGVQAAIKMGKDIHAISGEMMRF
Ga0133913_102286727	3300010885	Freshwater Lake	MIDPITAFATAQAAIKGVQAAIKMGKDIHAMSGDLMKFFEAKDVVA
Ga0133913_104812354	3300010885	Freshwater Lake	MDPFTAFATAQAAIKGIQAAIKMGKDIGAISGDLM
Ga0133913_119944761	3300010885	Freshwater Lake	VIDPVTAFMAAQAALKGIKAAIAMGKDIQGIAGDMVK
Ga0153801_10909593	3300012017	Freshwater	MIDPITAFAVAQGAIKGIQAAIKMGKDVQGITNDVMKFFD
Ga0164292_106070311	3300013005	Freshwater	MIDPITAFAAARAAVSGIQAAIKLGKDLQGITGDVMKFFDAK
Ga0170791_145708813	3300013295	Freshwater	MIDPITAFATAQAAIKGVKAAIALGKDIQAVSGDLMKFFD
Ga0181338_10415864	3300015050	Freshwater Lake	MIDPITAFAAARAAVSGIQAAIKLGKDIQGITGDVMKFFDAK
Ga0182046_16497742	3300016776	Salt Marsh	LIDPITAFATAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKDVVQKAASQP
Ga0181363_10083231	3300017707	Freshwater Lake	MIDPITAFATAQAAVAGIQKAIKLGKDINGLVGEFGKF
Ga0181350_10695044	3300017716	Freshwater Lake	MIDPLTAFAVAQGAIKGVQAAIKMGKDINAISGDLMKFF
Ga0181365_10243891	3300017736	Freshwater Lake	MIDPLTAFAVAQGAIKGIQAAIKMGKDVQGITHDVM
Ga0181365_10572191	3300017736	Freshwater Lake	MIDPVSAFIAAQAAVKGIQAAIKLGKDISGIASDLSKFFEAKDIV
Ga0181365_10627903	3300017736	Freshwater Lake	MIDPISAFAIAQGAIKGIQAAIKMGKDVQGITGDVMKFFDAK
Ga0181344_10871042	3300017754	Freshwater Lake	MIDPITAFATAQAAVAGIQKAIKLGKDINGLVGEFGKFFDAKDVVQK
Ga0181344_11564871	3300017754	Freshwater Lake	MIDPISAFAIAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKD
Ga0181358_10146921	3300017774	Freshwater Lake	MIDPITAFAVAQGAIKGIQAAIKMGKDINGISGDLMF
Ga0181358_10158058	3300017774	Freshwater Lake	MIDPISAFAIAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKDKV
Ga0181358_10696436	3300017774	Freshwater Lake	MIDPLTAFAVAQGAIKGVQAAMKMGKDINAISGDLMKFFEA
Ga0181358_12241771	3300017774	Freshwater Lake	MIDPLTAFAVAQGAIKGVQAAIKMGKDINAISGDL
Ga0181357_11951911	3300017777	Freshwater Lake	MTAFAVAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKEKVAKEAVK
Ga0181357_12048551	3300017777	Freshwater Lake	VDPLTAFAVAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKDK
Ga0181349_11855323	3300017778	Freshwater Lake	VIDPISAFAIAQGAIKGIQAAIKMGKDVQGLSPDRKS
Ga0181346_12386901	3300017780	Freshwater Lake	MIDPLTAFAIAQGAIKGVQAAIKMGKDINAISGDL
Ga0181355_12147191	3300017785	Freshwater Lake	MDPITAFAAAQAAVAGIQKAIKLGKDINGLVGEFGKFFDAKD
Ga0181355_12682671	3300017785	Freshwater Lake	VIDPLTAFAVAQGAIKGIQAAIKMGKDVQGITNDVMKFF
Ga0208486_10342491	3300020556	Freshwater	MIDPLTAFAVAQGAIKGIQAAIKMGKDINGISGDLM
Ga0194060_105838872	3300021602	Anoxic Zone Freshwater	VIDPVTAFATAQAAIKGVQAAIKMGKDIHAISGEM
Ga0222714_105869372	3300021961	Estuarine Water	MIDPITAFATAQAAVAGIQKALKLGKDITGCIKEFSALFESADVINK
Ga0222713_104319261	3300021962	Estuarine Water	MIDPITAFAVAQGAIKGVQAAIKMGKDINAISGDL
Ga0181354_10029951	3300022190	Freshwater Lake	MIDPITAFATAQAAVAGIQKALKLGKDITGCIKEFSQLFESADIVNKA
Ga0181354_10945165	3300022190	Freshwater Lake	VIDPLTAFAIAQSAVKGIQAAIKLGKDVQGITGDVMKFFDAKEKVAKV
Ga0181354_11767884	3300022190	Freshwater Lake	MIDPITAFAAARAAVSGIQAAIKLGKDIQGITGDVMKFFDAKDVV
Ga0181354_12374224	3300022190	Freshwater Lake	MIDPLTAFAVAQGAIKGVQAAIKMGKDINAISGDLI
Ga0214919_100731661	3300023184	Freshwater	MIDPITAFATAQAAIKGVQAAIKMGKDIHAIGAEAMKFFEAKDVVQRAAS
Ga0244775_105063863	3300024346	Estuarine	MIDPITAFATAQAAIKGVQAAIKMGKDIGAISGDLMKFFEAKDVVS
Ga0208613_10136456	3300025616	Freshwater	MLDPITAFATAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKDVVQKAASKPKGT
Ga0208644_11261441	3300025889	Aqueous	MIDPITAFATAQAAIKGVQAAIKMGKDIHAIGGEMMKFFEAKDIVQR
Ga0208966_10754401	3300027586	Freshwater Lentic	MIDPLTAFAVAQGAIKGVQAAIKMGKDINAISGDLMKFFDAKDVVAKEATK
Ga0208975_10290565	3300027659	Freshwater Lentic	MIDPITAFAAARAAVSGIQAAIKLGKDLQGITGDVMKFF
Ga0209442_11763581	3300027732	Freshwater Lake	VIDPITAFAVAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKEKV
Ga0209442_12918131	3300027732	Freshwater Lake	VDPLTAFAVAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKEKVAKE
Ga0209297_12250431	3300027733	Freshwater Lake	VIDPITAFATAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKDVVQRA
Ga0209087_100409713	3300027734	Freshwater Lake	VIDPITAFATAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKDVVQRAA
Ga0209087_10609144	3300027734	Freshwater Lake	VIDPITAFATAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKD
Ga0209085_11528481	3300027741	Freshwater Lake	MIDPITAFATAQAAIKGVKAAIALGKDIQAVSGDLMK
Ga0209084_13076902	3300027749	Freshwater Lake	MIDPITAFATAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKDVVQ
Ga0209444_100674764	3300027756	Freshwater Lake	MIDPISAFAIAQGAIKGIQAAIKMGKDVQGITNDVM
Ga0209444_100823581	3300027756	Freshwater Lake	MIDPITAFAVAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKDKVAKEAVK
Ga0209088_101363823	3300027763	Freshwater Lake	MIDPVTAFATAQAAIKGVQAAIKMGKDIHAIGGEMMK
Ga0209088_102047103	3300027763	Freshwater Lake	MIDPITAFATAQAAIKGIQAAIKMGKDIGAISGDLMKFFEAKDVV
Ga0209768_102247421	3300027772	Freshwater Lake	VIDPITAFAVAQGAIKGIQAAIKMGKDIQGITGDVM
Ga0209353_101564285	3300027798	Freshwater Lake	MIDPLTAFAAAQAAIKGVQAAIKMGKDIHAISGEMMK
Ga0209353_102203941	3300027798	Freshwater Lake	VIDPITAFAVAQGAIKGIQAAIKMGKDIQGITGDVMK
Ga0209354_100046071	3300027808	Freshwater Lake	MDPFTAFATAQAAIKGIQAAIKMGKDIGAISGDLMKFF
Ga0209354_101904441	3300027808	Freshwater Lake	MDPITAFAAAQAAVAGIQKAIKLGKDINGLVGEFGKFFDAKDVVQKAAN
Ga0209354_104263051	3300027808	Freshwater Lake	MIDPISAFAIAQGAIKGIQAAIKMGKDVQGITGDVM
Ga0209400_10290574	3300027963	Freshwater Lake	MDPITAFAAAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKDVVQR
Ga0209191_13214172	3300027969	Freshwater Lake	MIDPITAFATAQAAIKGIQAAIKMGKDIHAMSGDIMKLFDARNEVAV
Ga0315291_112875391	3300031707	Sediment	MIDPLTAFAVAQGAIKGVQAAIKMGKDINAISGDLMKFFEAKDVVAKAAVKP
Ga0315907_103300771	3300031758	Freshwater	MDPITAFATAQAAVAGIQKALKLGKDIQGLVGEFGRFFDAKDAVQKAAN
Ga0315907_107267454	3300031758	Freshwater	MDPITAFAAAQAAVAGIQKAIKLGKDINGLVGEFGKFFD
Ga0315288_109047931	3300031772	Sediment	MIDPLTAFAAAQAAIKGVQAAIKMGKDIHAISGEMMKFFEAKD
Ga0315904_103637324	3300031951	Freshwater	MIDPITAFATAQAAVAGIQKAIKLGKDINGLVGEFGKFFD
Ga0315904_104229014	3300031951	Freshwater	MDPITAFATAQAAVAGIQKAIKLGKDIQGLVGEFGKFFDAKDVVQKAANDSGKT
Ga0315278_110493254	3300031997	Sediment	MIDPLTAFAVAQGAIKGVQAAIKMGKDINAISGDLM
Ga0315274_114268893	3300031999	Sediment	MIDPLTAFAAAQAAIKGVQAAIKMGKDIHAISGEMMKFFEA
Ga0315289_109967091	3300032046	Sediment	MIDPLTAFAAAQAAIKGVQAAIKMGKDIHAISGEMMKFF
Ga0315906_101630061	3300032050	Freshwater	MIDPITAFATAQAAVAGIQKAIKLGKDINGLVGEFGK
Ga0315906_105876714	3300032050	Freshwater	MIDPITAFATAQAAVAGIQKAIKLGKDVNGLVGEFSRFFDARDAVQKAANDAG
Ga0315906_112329951	3300032050	Freshwater	MVDPITAFATAQAAVAGIQKAIKLGKDINGLIGDFGKFFDAKD
Ga0315903_102259731	3300032116	Freshwater	MDPITAFATAQAAVAGIQKALKLGKDIQGLVGEFGRFFDAKDAVQKAAND
Ga0315903_102795695	3300032116	Freshwater	VIDPITAFATAQAAVAGIQKAIKLGKDIQGLVGEFGRFFDAKDAVQKAANDAGKK
Ga0315903_108531521	3300032116	Freshwater	MLDPVTIGTAFATAQAAVAGIQKAIKLGKDINGLVGEFGKFFDARDVVQKA
Ga0315268_111518561	3300032173	Sediment	VIDPITAFMAAKAALKGIKAAIAMGKDVQGIAGDLVKFFDFKDVVVKA
Ga0315276_115434044	3300032177	Sediment	MIDPLTAFAVAQGAIKGVQAAIKMGKDINSISGDLMKFFEAKDVVAKE
Ga0316616_1014760712	3300033521	Soil	MIDPITAFATAQAAVAGIQKAIKLGKDINGLVGEFGKFFDARDVVQKAANDN
Ga0334987_0202534_2_118	3300034061	Freshwater	MIDPISAFAIAQGAIKGIQAAIKMGKDVQGITNDVMKFF
Ga0334995_0049046_3313_3465	3300034062	Freshwater	MIDPISAFAIAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKDKVAKEAVK
Ga0335012_0047211_2393_2497	3300034093	Freshwater	MIDPLTAFAVAQGAIKGVQAAIKMGKDINGISGDL
Ga0335061_0534302_1_156	3300034168	Freshwater	MIDPISAFAIAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKDKVAKEAVKD
Ga0335061_0658915_2_163	3300034168	Freshwater	MIDPITAFAVAQGAIKGIQAAIKMGKDINGISGDLMKFFEAKDVIAKESVKKKP
Ga0335007_0674257_1_144	3300034283	Freshwater	MIDPITAFATAQAAVAGIQKAIKLGKDINQLVGEFGKFFDARDVVQKA
Ga0335048_0070031_3_110	3300034356	Freshwater	MIDPLTAFAVAQGAIKGVQAAIKMGKDINGISGDLM