Basic Information | |
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Family ID | F069831 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 123 |
Average Sequence Length | 43 residues |
Representative Sequence | MIDPITAFATAQAAIKGVQAAIKMGKDIHAIGGEMMKFFEAKD |
Number of Associated Samples | 83 |
Number of Associated Scaffolds | 123 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 80.77 % |
% of genes near scaffold ends (potentially truncated) | 20.33 % |
% of genes from short scaffolds (< 2000 bps) | 17.89 % |
Associated GOLD sequencing projects | 76 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.44 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (80.488 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (27.642 % of family members) |
Environment Ontology (ENVO) | Unclassified (70.732 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (72.358 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 54.93% β-sheet: 0.00% Coil/Unstructured: 45.07% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.44 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Freshwater Freshwater Lake Freshwater Lentic Freshwater Freshwater, Plankton Anoxic Zone Freshwater Freshwater Lake Freshwater Lake Freshwater Sediment Freshwater Aqueous Marine Estuarine Salt Marsh Estuarine Estuarine Water Soil |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
B570J40625_1002693245 | 3300002835 | Freshwater | MLDPITAFATAQAAVAGIQKAIKLGKDINGLVGEFGKFFDAKDVVQKAANDNGKKGQ |
JGI25908J49247_100035227 | 3300003277 | Freshwater Lake | MIDPITAFAVAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKDKVAKE |
Ga0066177_105354952 | 3300004096 | Freshwater Lake | MDPLTAFAVAQGAIKGIQAAIKMGKDIQGITGDVMKFFDAKDKVA |
Ga0066222_11096321 | 3300004460 | Marine | MIDPVTAFATAQAAIKGVQAAIKMGKDIHAISADVMKFFDAK |
Ga0007797_11934531 | 3300004771 | Freshwater | VIDPVTAFATAQAAIKGVQAAIKMGKDIHAISGEMMRFFEAKDIVQREASK |
Ga0007794_100507184 | 3300004774 | Freshwater | MLDPITAFATAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKDVVQKAAS |
Ga0007794_100775015 | 3300004774 | Freshwater | MDPITAFAAAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKDVVQRAASK |
Ga0007800_100188721 | 3300004776 | Freshwater | MLDPITAFATAQAAIKGVQAAIKMGKDIHAIGGEMMKFFEAKDVVQKAASKPK |
Ga0007792_102106252 | 3300004805 | Freshwater | VIDPITAFATAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKDVVQKAAS |
Ga0075464_101266531 | 3300006805 | Aqueous | MIDPVTAFATAQAAIKGVQAAIKMGKDIHAVGAEAMKFFEAKD |
Ga0102828_10804561 | 3300007559 | Estuarine | MIDPITTAFATAQAAIKGVQAAIKMGKDIHAIGGEMMKFFEAKDIV |
Ga0102923_12364183 | 3300007606 | Estuarine | MIDPITAFATAQAAIKGVQAAIKMGKDIHAIGGEMMKFFEAKDIV |
Ga0114355_10724586 | 3300008120 | Freshwater, Plankton | MDPITAFAAAQAAVAGIQKAIKLGKDNNGLVGEFGKFFDAKDV |
Ga0114363_100307215 | 3300008266 | Freshwater, Plankton | MDPLTAFAVAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKDKVAKEA |
Ga0114363_10287534 | 3300008266 | Freshwater, Plankton | MDPITAFAAAQAAVAGIQKAIKLGKDINGLVGQVF* |
Ga0114364_10662534 | 3300008267 | Freshwater, Plankton | MIDPITAFAVAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAK |
Ga0114364_11104501 | 3300008267 | Freshwater, Plankton | MDPLTAFAVAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAK |
Ga0114876_11011861 | 3300008448 | Freshwater Lake | MDPITAFAAAQAAVLGIQKAIKLGKDINGLVGEFGKFFDAR |
Ga0114880_10309925 | 3300008450 | Freshwater Lake | MDPITAFAAAQAAVAGIQKAIKLGKDINGLVGEFGKFFDAKDVVQKAANDK |
Ga0114962_101450281 | 3300009151 | Freshwater Lake | MIDPITAFATAQAAIKGVQAAIKMGKDIHAIGGEMMKFFEA |
Ga0114962_101688061 | 3300009151 | Freshwater Lake | MIDPFTAFATAQAAIKGVQAAIKMGKDIGAISGDL |
Ga0114962_102360822 | 3300009151 | Freshwater Lake | MIDPVTAFATAQAAIKGVHVAIKMGKDIHAIGGEMTKFFEAKDIVQREASK |
Ga0114962_102548571 | 3300009151 | Freshwater Lake | MLDPITAFATAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKD |
Ga0114963_100275644 | 3300009154 | Freshwater Lake | MIDPITAFATAQAAIKGVKAAIALGKDIQAVSGDLMK* |
Ga0114963_100371935 | 3300009154 | Freshwater Lake | MIDPITAFATAQAAIKGVQAAIKMGKDIGAISGDLMKFFE |
Ga0114963_100696684 | 3300009154 | Freshwater Lake | MIDPITAFATAQAAIKGVQAAIKMGKDIHAIGGEMMKFFEAKD |
Ga0114968_100239591 | 3300009155 | Freshwater Lake | MDPITAFAAAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKDVVQ |
Ga0114970_101694401 | 3300009163 | Freshwater Lake | MIDPITAFATAQAAIKGVQAAIKMGKDIHAIGGEMMKFFEAKDIVQREA |
Ga0114970_107833823 | 3300009163 | Freshwater Lake | MIDPLTAFAVAQGAIKGVQAAIKMGKDINAISGDLMKFFEAKDVVAKAAVKKKP |
Ga0114975_100233836 | 3300009164 | Freshwater Lake | MLDPVTAFATAQAAIKGVQAAIKMGKDIHAIGGEMMKFFEAKDVV |
Ga0114979_103269383 | 3300009180 | Freshwater Lake | MIDPVTAFATAQAAIKGVQAAIKMGKDIHAIGGEMMRFFEAKDVVQKAASQP |
Ga0114969_100882865 | 3300009181 | Freshwater Lake | MIDPLTAFAVAQGAIKGVQAAIKMGKDINAISGDLMKFFEAKDVVAKEAVK |
Ga0114969_103005391 | 3300009181 | Freshwater Lake | MVDPVTAFMAAQAALKGIKAAIAMGKDIQGIAGDM |
Ga0114971_103364802 | 3300009185 | Freshwater Lake | MIDPVTAFATAQAAIKAVQVAIKMGKDIHAIGGEM |
Ga0114960_100925571 | 3300010158 | Freshwater Lake | MIDPITAFATAQAAIKGVKAAIALGKDIQAVSGDLMKFF |
Ga0114967_101212225 | 3300010160 | Freshwater Lake | VEEGLIDPVTAFATAQAAIKGVKAAIALGKDIQAVSGDLMNFFEAKDVV |
Ga0114967_102827341 | 3300010160 | Freshwater Lake | MIDPLTAFAVAQGAIKGVQAAIKMGKDINAISGDLMKF |
Ga0114967_104493231 | 3300010160 | Freshwater Lake | MIDPLTAFAVAQGAIKGVQAAIKMGKDINSISGDLMKF |
Ga0136644_100593771 | 3300010334 | Freshwater Lake | MIDPITAFATAQAAIKGVQAAIKMGKDIGAISGDLMK |
Ga0136644_102486434 | 3300010334 | Freshwater Lake | VIDPITAFATAQAAIKGVQAAIKMGKDIHAISGEMMRF |
Ga0133913_102286727 | 3300010885 | Freshwater Lake | MIDPITAFATAQAAIKGVQAAIKMGKDIHAMSGDLMKFFEAKDVVA |
Ga0133913_104812354 | 3300010885 | Freshwater Lake | MDPFTAFATAQAAIKGIQAAIKMGKDIGAISGDLM |
Ga0133913_119944761 | 3300010885 | Freshwater Lake | VIDPVTAFMAAQAALKGIKAAIAMGKDIQGIAGDMVK |
Ga0153801_10909593 | 3300012017 | Freshwater | MIDPITAFAVAQGAIKGIQAAIKMGKDVQGITNDVMKFFD |
Ga0164292_106070311 | 3300013005 | Freshwater | MIDPITAFAAARAAVSGIQAAIKLGKDLQGITGDVMKFFDAK |
Ga0170791_145708813 | 3300013295 | Freshwater | MIDPITAFATAQAAIKGVKAAIALGKDIQAVSGDLMKFFD |
Ga0181338_10415864 | 3300015050 | Freshwater Lake | MIDPITAFAAARAAVSGIQAAIKLGKDIQGITGDVMKFFDAK |
Ga0182046_16497742 | 3300016776 | Salt Marsh | LIDPITAFATAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKDVVQKAASQP |
Ga0181363_10083231 | 3300017707 | Freshwater Lake | MIDPITAFATAQAAVAGIQKAIKLGKDINGLVGEFGKF |
Ga0181350_10695044 | 3300017716 | Freshwater Lake | MIDPLTAFAVAQGAIKGVQAAIKMGKDINAISGDLMKFF |
Ga0181365_10243891 | 3300017736 | Freshwater Lake | MIDPLTAFAVAQGAIKGIQAAIKMGKDVQGITHDVM |
Ga0181365_10572191 | 3300017736 | Freshwater Lake | MIDPVSAFIAAQAAVKGIQAAIKLGKDISGIASDLSKFFEAKDIV |
Ga0181365_10627903 | 3300017736 | Freshwater Lake | MIDPISAFAIAQGAIKGIQAAIKMGKDVQGITGDVMKFFDAK |
Ga0181344_10871042 | 3300017754 | Freshwater Lake | MIDPITAFATAQAAVAGIQKAIKLGKDINGLVGEFGKFFDAKDVVQK |
Ga0181344_11564871 | 3300017754 | Freshwater Lake | MIDPISAFAIAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKD |
Ga0181358_10146921 | 3300017774 | Freshwater Lake | MIDPITAFAVAQGAIKGIQAAIKMGKDINGISGDLMF |
Ga0181358_10158058 | 3300017774 | Freshwater Lake | MIDPISAFAIAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKDKV |
Ga0181358_10696436 | 3300017774 | Freshwater Lake | MIDPLTAFAVAQGAIKGVQAAMKMGKDINAISGDLMKFFEA |
Ga0181358_12241771 | 3300017774 | Freshwater Lake | MIDPLTAFAVAQGAIKGVQAAIKMGKDINAISGDL |
Ga0181357_11951911 | 3300017777 | Freshwater Lake | MTAFAVAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKEKVAKEAVK |
Ga0181357_12048551 | 3300017777 | Freshwater Lake | VDPLTAFAVAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKDK |
Ga0181349_11855323 | 3300017778 | Freshwater Lake | VIDPISAFAIAQGAIKGIQAAIKMGKDVQGLSPDRKS |
Ga0181346_12386901 | 3300017780 | Freshwater Lake | MIDPLTAFAIAQGAIKGVQAAIKMGKDINAISGDL |
Ga0181355_12147191 | 3300017785 | Freshwater Lake | MDPITAFAAAQAAVAGIQKAIKLGKDINGLVGEFGKFFDAKD |
Ga0181355_12682671 | 3300017785 | Freshwater Lake | VIDPLTAFAVAQGAIKGIQAAIKMGKDVQGITNDVMKFF |
Ga0208486_10342491 | 3300020556 | Freshwater | MIDPLTAFAVAQGAIKGIQAAIKMGKDINGISGDLM |
Ga0194060_105838872 | 3300021602 | Anoxic Zone Freshwater | VIDPVTAFATAQAAIKGVQAAIKMGKDIHAISGEM |
Ga0222714_105869372 | 3300021961 | Estuarine Water | MIDPITAFATAQAAVAGIQKALKLGKDITGCIKEFSALFESADVINK |
Ga0222713_104319261 | 3300021962 | Estuarine Water | MIDPITAFAVAQGAIKGVQAAIKMGKDINAISGDL |
Ga0181354_10029951 | 3300022190 | Freshwater Lake | MIDPITAFATAQAAVAGIQKALKLGKDITGCIKEFSQLFESADIVNKA |
Ga0181354_10945165 | 3300022190 | Freshwater Lake | VIDPLTAFAIAQSAVKGIQAAIKLGKDVQGITGDVMKFFDAKEKVAKV |
Ga0181354_11767884 | 3300022190 | Freshwater Lake | MIDPITAFAAARAAVSGIQAAIKLGKDIQGITGDVMKFFDAKDVV |
Ga0181354_12374224 | 3300022190 | Freshwater Lake | MIDPLTAFAVAQGAIKGVQAAIKMGKDINAISGDLI |
Ga0214919_100731661 | 3300023184 | Freshwater | MIDPITAFATAQAAIKGVQAAIKMGKDIHAIGAEAMKFFEAKDVVQRAAS |
Ga0244775_105063863 | 3300024346 | Estuarine | MIDPITAFATAQAAIKGVQAAIKMGKDIGAISGDLMKFFEAKDVVS |
Ga0208613_10136456 | 3300025616 | Freshwater | MLDPITAFATAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKDVVQKAASKPKGT |
Ga0208644_11261441 | 3300025889 | Aqueous | MIDPITAFATAQAAIKGVQAAIKMGKDIHAIGGEMMKFFEAKDIVQR |
Ga0208966_10754401 | 3300027586 | Freshwater Lentic | MIDPLTAFAVAQGAIKGVQAAIKMGKDINAISGDLMKFFDAKDVVAKEATK |
Ga0208975_10290565 | 3300027659 | Freshwater Lentic | MIDPITAFAAARAAVSGIQAAIKLGKDLQGITGDVMKFF |
Ga0209442_11763581 | 3300027732 | Freshwater Lake | VIDPITAFAVAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKEKV |
Ga0209442_12918131 | 3300027732 | Freshwater Lake | VDPLTAFAVAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKEKVAKE |
Ga0209297_12250431 | 3300027733 | Freshwater Lake | VIDPITAFATAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKDVVQRA |
Ga0209087_100409713 | 3300027734 | Freshwater Lake | VIDPITAFATAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKDVVQRAA |
Ga0209087_10609144 | 3300027734 | Freshwater Lake | VIDPITAFATAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKD |
Ga0209085_11528481 | 3300027741 | Freshwater Lake | MIDPITAFATAQAAIKGVKAAIALGKDIQAVSGDLMK |
Ga0209084_13076902 | 3300027749 | Freshwater Lake | MIDPITAFATAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKDVVQ |
Ga0209444_100674764 | 3300027756 | Freshwater Lake | MIDPISAFAIAQGAIKGIQAAIKMGKDVQGITNDVM |
Ga0209444_100823581 | 3300027756 | Freshwater Lake | MIDPITAFAVAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKDKVAKEAVK |
Ga0209088_101363823 | 3300027763 | Freshwater Lake | MIDPVTAFATAQAAIKGVQAAIKMGKDIHAIGGEMMK |
Ga0209088_102047103 | 3300027763 | Freshwater Lake | MIDPITAFATAQAAIKGIQAAIKMGKDIGAISGDLMKFFEAKDVV |
Ga0209768_102247421 | 3300027772 | Freshwater Lake | VIDPITAFAVAQGAIKGIQAAIKMGKDIQGITGDVM |
Ga0209353_101564285 | 3300027798 | Freshwater Lake | MIDPLTAFAAAQAAIKGVQAAIKMGKDIHAISGEMMK |
Ga0209353_102203941 | 3300027798 | Freshwater Lake | VIDPITAFAVAQGAIKGIQAAIKMGKDIQGITGDVMK |
Ga0209354_100046071 | 3300027808 | Freshwater Lake | MDPFTAFATAQAAIKGIQAAIKMGKDIGAISGDLMKFF |
Ga0209354_101904441 | 3300027808 | Freshwater Lake | MDPITAFAAAQAAVAGIQKAIKLGKDINGLVGEFGKFFDAKDVVQKAAN |
Ga0209354_104263051 | 3300027808 | Freshwater Lake | MIDPISAFAIAQGAIKGIQAAIKMGKDVQGITGDVM |
Ga0209400_10290574 | 3300027963 | Freshwater Lake | MDPITAFAAAQAAVKGVQAAIKLGKDIHAITGEAMKFFEAKDVVQR |
Ga0209191_13214172 | 3300027969 | Freshwater Lake | MIDPITAFATAQAAIKGIQAAIKMGKDIHAMSGDIMKLFDARNEVAV |
Ga0315291_112875391 | 3300031707 | Sediment | MIDPLTAFAVAQGAIKGVQAAIKMGKDINAISGDLMKFFEAKDVVAKAAVKP |
Ga0315907_103300771 | 3300031758 | Freshwater | MDPITAFATAQAAVAGIQKALKLGKDIQGLVGEFGRFFDAKDAVQKAAN |
Ga0315907_107267454 | 3300031758 | Freshwater | MDPITAFAAAQAAVAGIQKAIKLGKDINGLVGEFGKFFD |
Ga0315288_109047931 | 3300031772 | Sediment | MIDPLTAFAAAQAAIKGVQAAIKMGKDIHAISGEMMKFFEAKD |
Ga0315904_103637324 | 3300031951 | Freshwater | MIDPITAFATAQAAVAGIQKAIKLGKDINGLVGEFGKFFD |
Ga0315904_104229014 | 3300031951 | Freshwater | MDPITAFATAQAAVAGIQKAIKLGKDIQGLVGEFGKFFDAKDVVQKAANDSGKT |
Ga0315278_110493254 | 3300031997 | Sediment | MIDPLTAFAVAQGAIKGVQAAIKMGKDINAISGDLM |
Ga0315274_114268893 | 3300031999 | Sediment | MIDPLTAFAAAQAAIKGVQAAIKMGKDIHAISGEMMKFFEA |
Ga0315289_109967091 | 3300032046 | Sediment | MIDPLTAFAAAQAAIKGVQAAIKMGKDIHAISGEMMKFF |
Ga0315906_101630061 | 3300032050 | Freshwater | MIDPITAFATAQAAVAGIQKAIKLGKDINGLVGEFGK |
Ga0315906_105876714 | 3300032050 | Freshwater | MIDPITAFATAQAAVAGIQKAIKLGKDVNGLVGEFSRFFDARDAVQKAANDAG |
Ga0315906_112329951 | 3300032050 | Freshwater | MVDPITAFATAQAAVAGIQKAIKLGKDINGLIGDFGKFFDAKD |
Ga0315903_102259731 | 3300032116 | Freshwater | MDPITAFATAQAAVAGIQKALKLGKDIQGLVGEFGRFFDAKDAVQKAAND |
Ga0315903_102795695 | 3300032116 | Freshwater | VIDPITAFATAQAAVAGIQKAIKLGKDIQGLVGEFGRFFDAKDAVQKAANDAGKK |
Ga0315903_108531521 | 3300032116 | Freshwater | MLDPVTIGTAFATAQAAVAGIQKAIKLGKDINGLVGEFGKFFDARDVVQKA |
Ga0315268_111518561 | 3300032173 | Sediment | VIDPITAFMAAKAALKGIKAAIAMGKDVQGIAGDLVKFFDFKDVVVKA |
Ga0315276_115434044 | 3300032177 | Sediment | MIDPLTAFAVAQGAIKGVQAAIKMGKDINSISGDLMKFFEAKDVVAKE |
Ga0316616_1014760712 | 3300033521 | Soil | MIDPITAFATAQAAVAGIQKAIKLGKDINGLVGEFGKFFDARDVVQKAANDN |
Ga0334987_0202534_2_118 | 3300034061 | Freshwater | MIDPISAFAIAQGAIKGIQAAIKMGKDVQGITNDVMKFF |
Ga0334995_0049046_3313_3465 | 3300034062 | Freshwater | MIDPISAFAIAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKDKVAKEAVK |
Ga0335012_0047211_2393_2497 | 3300034093 | Freshwater | MIDPLTAFAVAQGAIKGVQAAIKMGKDINGISGDL |
Ga0335061_0534302_1_156 | 3300034168 | Freshwater | MIDPISAFAIAQGAIKGIQAAIKMGKDVQGITNDVMKFFDAKDKVAKEAVKD |
Ga0335061_0658915_2_163 | 3300034168 | Freshwater | MIDPITAFAVAQGAIKGIQAAIKMGKDINGISGDLMKFFEAKDVIAKESVKKKP |
Ga0335007_0674257_1_144 | 3300034283 | Freshwater | MIDPITAFATAQAAVAGIQKAIKLGKDINQLVGEFGKFFDARDVVQKA |
Ga0335048_0070031_3_110 | 3300034356 | Freshwater | MIDPLTAFAVAQGAIKGVQAAIKMGKDINGISGDLM |
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