Metagenome Family F069770

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069770
Family Type	Metagenome
Number of Sequences	123
Average Sequence Length	111 residues
Representative Sequence	ARLGDAAPGGGHYSNFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRIAASGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVTPTTTGVGPEGLFLATAEP
Number of Associated Samples	101
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.85 %
% of genes near scaffold ends (potentially truncated)	91.87 %
% of genes from short scaffolds (< 2000 bps)	82.93 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (91.057 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (10.569 % of family members)
Environment Ontology (ENVO)	Unclassified (60.976 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (76.423 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 40.74% Coil/Unstructured: 59.26%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF13407	Peripla_BP_4	26.83
PF04199	Cyclase	5.69
PF00532	Peripla_BP_1	1.63
PF13377	Peripla_BP_3	1.63
PF00005	ABC_tran	1.63
PF13193	AMP-binding_C	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	5.69

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.06 %
Unclassified	root	N/A	8.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.06 %
Unclassified	root	N/A	8.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.06 %
Unclassified	root	N/A	8.94 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	48.78 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	26.02 %
Unclassified	root	N/A	8.94 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	47.15 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	26.02 %
Unclassified	root	N/A	8.94 %

Name	Rank	Taxonomy	Distribution
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	41.46 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	26.02 %
Unclassified	root	N/A	8.94 %

Name	Rank	Taxonomy	Distribution
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	38.21 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	25.20 %
Unclassified	root	N/A	8.94 %

Name	Rank	Taxonomy	Distribution
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	38.21 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	25.20 %
Unclassified	root	N/A	8.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004156\|Ga0062589_102392744	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300004157\|Ga0062590_103027234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	504	Open in IMG/M
3300004463\|Ga0063356_104803631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	581	Open in IMG/M
3300005327\|Ga0070658_10367626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1233	Open in IMG/M
3300005328\|Ga0070676_10013997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	4402	Open in IMG/M
3300005328\|Ga0070676_10346060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1021	Open in IMG/M
3300005328\|Ga0070676_11367590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	542	Open in IMG/M
3300005335\|Ga0070666_11368069	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300005347\|Ga0070668_100078410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	2584	Open in IMG/M
3300005347\|Ga0070668_102218075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	507	Open in IMG/M
3300005353\|Ga0070669_100445196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1067	Open in IMG/M
3300005353\|Ga0070669_101466893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	593	Open in IMG/M
3300005355\|Ga0070671_100461851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1090	Open in IMG/M
3300005355\|Ga0070671_100751895	Not Available	847	Open in IMG/M
3300005365\|Ga0070688_100125911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1722	Open in IMG/M
3300005366\|Ga0070659_100376390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1195	Open in IMG/M
3300005406\|Ga0070703_10144855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	886	Open in IMG/M
3300005438\|Ga0070701_10448045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	828	Open in IMG/M
3300005438\|Ga0070701_10563228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	749	Open in IMG/M
3300005441\|Ga0070700_101461998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	580	Open in IMG/M
3300005451\|Ga0066681_10410843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	832	Open in IMG/M
3300005455\|Ga0070663_100042637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3189	Open in IMG/M
3300005457\|Ga0070662_101465193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	588	Open in IMG/M
3300005466\|Ga0070685_10872529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	668	Open in IMG/M
3300005539\|Ga0068853_101709251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	610	Open in IMG/M
3300005543\|Ga0070672_101381464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	630	Open in IMG/M
3300005544\|Ga0070686_100962175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	698	Open in IMG/M
3300005549\|Ga0070704_100052741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	2871	Open in IMG/M
3300005578\|Ga0068854_100779197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	832	Open in IMG/M
3300005617\|Ga0068859_102080899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	627	Open in IMG/M
3300005618\|Ga0068864_100098343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	2592	Open in IMG/M
3300005719\|Ga0068861_100424534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1185	Open in IMG/M
3300005834\|Ga0068851_10869849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	563	Open in IMG/M
3300005840\|Ga0068870_10155273	All Organisms → cellular organisms → Bacteria	1352	Open in IMG/M
3300005844\|Ga0068862_100272848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1547	Open in IMG/M
3300006881\|Ga0068865_100498651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1015	Open in IMG/M
3300006881\|Ga0068865_102107657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M
3300006904\|Ga0075424_101072740	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	858	Open in IMG/M
3300009090\|Ga0099827_10103838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	2264	Open in IMG/M
3300009094\|Ga0111539_12337874	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300009156\|Ga0111538_10973556	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1073	Open in IMG/M
3300009174\|Ga0105241_12689879	Not Available	501	Open in IMG/M
3300009176\|Ga0105242_11981451	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	624	Open in IMG/M
3300010373\|Ga0134128_12456718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	574	Open in IMG/M
3300010400\|Ga0134122_12363527	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300010403\|Ga0134123_10604797	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1054	Open in IMG/M
3300011119\|Ga0105246_10758328	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	857	Open in IMG/M
3300012096\|Ga0137389_10418753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1145	Open in IMG/M
3300012361\|Ga0137360_10898439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	763	Open in IMG/M
3300012362\|Ga0137361_10428117	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1216	Open in IMG/M
3300012480\|Ga0157346_1018989	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	584	Open in IMG/M
3300012904\|Ga0157282_10369361	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300012918\|Ga0137396_11206496	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	533	Open in IMG/M
3300012922\|Ga0137394_10465546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1075	Open in IMG/M
3300012922\|Ga0137394_10467924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1072	Open in IMG/M
3300013297\|Ga0157378_10122230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2401	Open in IMG/M
3300013297\|Ga0157378_10363095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1418	Open in IMG/M
3300013306\|Ga0163162_11210139	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	857	Open in IMG/M
3300013306\|Ga0163162_13480386	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300013308\|Ga0157375_11070571	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	943	Open in IMG/M
3300013308\|Ga0157375_13637458	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300013308\|Ga0157375_13692863	Not Available	509	Open in IMG/M
3300014325\|Ga0163163_12536423	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300014326\|Ga0157380_11429854	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	743	Open in IMG/M
3300014969\|Ga0157376_10392277	All Organisms → cellular organisms → Bacteria	1340	Open in IMG/M
3300014969\|Ga0157376_12588902	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	547	Open in IMG/M
3300015054\|Ga0137420_1020604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2364	Open in IMG/M
3300015373\|Ga0132257_101624708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	827	Open in IMG/M
3300015374\|Ga0132255_105365275	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300015374\|Ga0132255_105953995	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	516	Open in IMG/M
3300017792\|Ga0163161_10770301	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	806	Open in IMG/M
3300022904\|Ga0247769_1164006	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300025315\|Ga0207697_10036765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2005	Open in IMG/M
3300025321\|Ga0207656_10378849	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	709	Open in IMG/M
3300025321\|Ga0207656_10570080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	577	Open in IMG/M
3300025907\|Ga0207645_10018928	All Organisms → cellular organisms → Bacteria → Proteobacteria	4522	Open in IMG/M
3300025908\|Ga0207643_10585097	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	718	Open in IMG/M
3300025918\|Ga0207662_11147626	Not Available	552	Open in IMG/M
3300025923\|Ga0207681_11096738	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	668	Open in IMG/M
3300025926\|Ga0207659_10086909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	2326	Open in IMG/M
3300025930\|Ga0207701_10250156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1547	Open in IMG/M
3300025931\|Ga0207644_10588602	Not Available	923	Open in IMG/M
3300025931\|Ga0207644_10732401	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	825	Open in IMG/M
3300025931\|Ga0207644_11839259	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300025934\|Ga0207686_11480670	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	559	Open in IMG/M
3300025940\|Ga0207691_10156025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	2004	Open in IMG/M
3300025940\|Ga0207691_10760607	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	815	Open in IMG/M
3300025941\|Ga0207711_10275354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1549	Open in IMG/M
3300025960\|Ga0207651_10092574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	2217	Open in IMG/M
3300025972\|Ga0207668_11481427	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300026041\|Ga0207639_11116406	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	740	Open in IMG/M
3300026075\|Ga0207708_10746325	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	840	Open in IMG/M
3300026088\|Ga0207641_10026369	All Organisms → cellular organisms → Bacteria → Proteobacteria	4795	Open in IMG/M
3300026088\|Ga0207641_12012166	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300026089\|Ga0207648_10578694	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1033	Open in IMG/M
3300026095\|Ga0207676_10167378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1911	Open in IMG/M
3300026095\|Ga0207676_12075430	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300026277\|Ga0209350_1093873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	763	Open in IMG/M
3300026323\|Ga0209472_1275305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	536	Open in IMG/M
3300027655\|Ga0209388_1193623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	565	Open in IMG/M
3300027882\|Ga0209590_10475082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	808	Open in IMG/M
3300027909\|Ga0209382_12210472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	520	Open in IMG/M
3300028596\|Ga0247821_10656403	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	681	Open in IMG/M
3300028889\|Ga0247827_10949199	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	581	Open in IMG/M
3300031538\|Ga0310888_10667738	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	635	Open in IMG/M
3300031716\|Ga0310813_11087446	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	732	Open in IMG/M
3300031740\|Ga0307468_101304254	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300031820\|Ga0307473_10807837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	669	Open in IMG/M
3300031820\|Ga0307473_11260756	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300031847\|Ga0310907_10563598	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300031911\|Ga0307412_11719914	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300032012\|Ga0310902_11028765	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	573	Open in IMG/M
3300032017\|Ga0310899_10529304	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	582	Open in IMG/M
3300032075\|Ga0310890_10223207	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1308	Open in IMG/M
3300032122\|Ga0310895_10034019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1767	Open in IMG/M
3300033550\|Ga0247829_10087859	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2307	Open in IMG/M
3300034819\|Ga0373958_0075582	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	755	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	60.16%
Environmental	Environmental	39.84%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	60.16%
Terrestrial	Environmental → Terrestrial	38.21%
Aquatic	Environmental → Aquatic	1.63%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	37.40%
Rhizosphere	Host-Associated → Plants → Rhizosphere	35.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	23.58%
Freshwater	Environmental → Aquatic → Freshwater	0.81%
Sediment	Environmental → Aquatic → Sediment	0.81%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.81%
Roots	Host-Associated → Plants → Roots	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.27%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	21.14%
Soil	Host-Associated → Plants → Rhizosphere → Soil	21.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.63%
Loam	Environmental → Terrestrial → Soil → Loam	8.13%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.44%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.81%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	21.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	21.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.63%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.01%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.13%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.32%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.44%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.63%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.81%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.81%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	10.57%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.32%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	7.32%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	6.50%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.69%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.25%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.25%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.25%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.25%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.44%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.44%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.44%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.44%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.63%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.81%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.81%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012480	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.yng.040610	Host-Associated	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300022904	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L166-409R-6	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062589_1023927441	3300004156	Soil	FGLWPVVSEKGTIAFTAAVDGGPSPVIAVRIASGGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVTPTTTGVGPEGLFLATAEP*
Ga0062590_1030272341	3300004157	Soil	NFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRIAASGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVTPTTTGVGPEGLFLATAEP*
Ga0063356_1048036311	3300004463	Arabidopsis Thaliana Rhizosphere	RDGRTQAVARLGDAAPGGGQYSNFGLWPVISEKGTIAFTAAVDGGPSPVIAVRMAASAPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDISFAVAPTTTGAGPEGLFVASAEP*
Ga0070658_103676261	3300005327	Corn Rhizosphere	VISERGAIAFTAAVDGGPSPVIAVRVAANGPRRVVGVGDSVPGGARIESFSLLPVVSIGAAGEVSFAVAPTTAGAGPEGLFVATAEP*
Ga0070676_100139971	3300005328	Miscanthus Rhizosphere	AAGIFAIRDGRTHAVARLGEAAPGGGQYSNFGLWPVVNEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDNVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFLATADP*
Ga0070676_103460601	3300005328	Miscanthus Rhizosphere	VSEKGTIAFTAAVDGGPSPVIAVRIAASGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVTPTTTGVGPEGLFLATAEP*
Ga0070676_113675901	3300005328	Miscanthus Rhizosphere	LGDAAPGGGTLSNFGLWPAVSTKGVIAFTAAVDGGPSPVIVVLVAGDGPRRVVGVGDSVPGGTPIASLTLLPVVSVGAAGVVSFAVAPTATGGGPEGLFVAAPEP*
Ga0070666_113680691	3300005335	Switchgrass Rhizosphere	VSEKGTIAFTAAVDGGPSPVIAVRIASGGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTAGAGPEGLFVASAEP*
Ga0070668_1000784104	3300005347	Switchgrass Rhizosphere	TVVFHGQLKGAPTAAGIFAIEDGRTRAVARLGDEAPGGGHYSNFGLWPAVNARGTIAFTAAVDGGPSPVIAVRVATGGPRRVVGVGDSVPGGERIASLSLLPVVSIGAAGDVSFAVAPTTAGAGPEGLFVAPAAEP*
Ga0070668_1022180751	3300005347	Switchgrass Rhizosphere	AVARLGDAAPGGGQYSNFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDSVPGGARIESLSLLPVVSIGAAGQISFAVAPTTTGAGPEGLFVATAEP*
Ga0070669_1004451962	3300005353	Switchgrass Rhizosphere	AAPGGGQYSNFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDSVPGGARIESLSLLPVVSIGAAGQISFAVAPTTTGAGPEGLFVATAEP*
Ga0070669_1014668932	3300005353	Switchgrass Rhizosphere	ERIGFGDRGTIVFHGQIKGVPTAAGIFAIRDGRIQAVARLGDAAPGGGHYSNFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRIASGGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTAGAGPEGLFVASAEP*
Ga0070671_1004618512	3300005355	Switchgrass Rhizosphere	RIQAVARLGDAAPGGGHYSNFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRIASGGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTAGAGPEGLFVASAEP*
Ga0070671_1007518951	3300005355	Switchgrass Rhizosphere	GGRFSNFGLWPAVSATGAIGFAASVDDGPSPVIVVRTGREGLHRVVGVGDPLPGGARIASLTLLPVVSLGGTGTVSFAVAPTATGGGPEGVFVAEAEP*
Ga0070688_1001259111	3300005365	Switchgrass Rhizosphere	AAGIFAIRDGRVQAVARLGDAAPGGGQYSNFGLWPVISEKGTIAFTAAVDGGPSPVIAVRIAASGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVTPTTTGVGPEGLFLATAEP*
Ga0070659_1003763902	3300005366	Corn Rhizosphere	IVFHGQLKDASVAAGIFALREGRLRAVARLGDAAPGGGRYSNFGLWPAVSANGTIAFTAAVDDGPSPVIAVRIAADGPQRVVGVGDDVPGGGRIASLSLLPVVSIGPAGDVSFAVAPTTADPGPEGLFVSAAP*
Ga0070703_101448551	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	TLSNFGLWPAVSTKGVIAFTAAVDGGPSPVIVVLVAGDGPRRVVGVGDSVPGGTPIASLTLLPVVSVGAAGVVSFAVAPTATGGGSEGLFGAAPEP*
Ga0070701_104480451	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	IRDGRTQAVARLGDVAPGGGQYSNFGLWPVVNEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDNVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFLATADP*
Ga0070701_105632281	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	FALREGRLRAVARLGDAAPGGGRYSNFGLWPAVSANGTIAFTAAVDDGPSPVIAVRIAADGPQRVVGVGDDVPGGGRIASLSLLPVVSIGPAGDVSFAVAPTTADPGPEGLFVSAAP*
Ga0070700_1014619981	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	AAGIFAIRDGRTQAVARLGDAAPGGGQYSNFGLWPVVNEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDNVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFLATADP*
Ga0066681_104108431	3300005451	Soil	IEDGRPRVVARLGDPAPGGGHFSNFGLWPAVGASGAIAFAGSVDDGPSPVIVVRTAADGLRRVVGVGDRVPSGARIATLTLLPVVSVNTGGAVSFAVAPTATGEGPEGLFLATPGP*
Ga0070663_1000426374	3300005455	Corn Rhizosphere	NFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRIAASGPRRVVGVGDSVPGGARIESFSLLPVVSIGAAGEVSFAVAPTTAGAGPEGLFVAIAEP*
Ga0070662_1014651931	3300005457	Corn Rhizosphere	RLGDAAPGGGQYSNFGLWPVISEKGTIAFTAAVDGGPSPVIAVRMAAGGPRRVVGVGDTVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFVTAAEP*
Ga0070685_108725292	3300005466	Switchgrass Rhizosphere	TVVFHGQLKGAPKAAGIFAIRDGRTQAVARLGDVAPGGGQYSNFGLWPVVNEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDNVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFLATADP*
Ga0068853_1017092512	3300005539	Corn Rhizosphere	FGLWPVVNEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDNVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFLATADP*
Ga0070672_1013814641	3300005543	Miscanthus Rhizosphere	FAIRDGRTQAVARLGDAAPGGGQYSNFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRMTANGPRRVISVGDSVPGGARIESLSLLPVVSIGAAGDISFAVTPTTTGAGPEGLFVATAEP*
Ga0070686_1009621751	3300005544	Switchgrass Rhizosphere	AIRDGRTQAVARLGDAAPGGGQYSNFGLWPVVNEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDNVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFLATADP*
Ga0070704_1000527414	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	PGGGTLSNFGLWPAVSTKGVIAFTAAVDGGPSPVIVVLVAGDGPRRVVGVGDSVPGGTPIASLTLLPVVSVGAAGVVSFAVAPTATGGGPEGLFVAAPEP*
Ga0066661_104190261	3300005554	Soil	HFSNFGLWPAVGASGVVAFAGSVDDGPSPVIVVRTAADGLRRVIGVGDSLPSGARIATLTLLPVVSVNTGGAVSFAVAPTATGEGPEGLFLATPGP*
Ga0066693_100303533	3300005566	Soil	GGGHFSNFGLWPAVGASGAIAFAGSVDDGPSPVIVVRTAADGLRRVVGVGDRVPSGARIATLTLLPVVSVNTGGAVSFAVAPTATGEGPEGLFLATPGP*
Ga0068854_1007791971	3300005578	Corn Rhizosphere	QYSNFGLWPVISERGAIAFTAAVDGGPSPVIAVRVAANGPRRVVGVGDSVPGGARIESFSLLPVVSIGAAGEVSFAVAPTTAGAGPEGLFVATAEP*
Ga0068859_1020808992	3300005617	Switchgrass Rhizosphere	AGIFAIRDGRTQAVARLGDAAPGGGQYSNFGLWPVVNEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDNVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFLATADP*
Ga0068864_1000983434	3300005618	Switchgrass Rhizosphere	RAVARLGDAAPGGGQYSNFGLWPVISERGAIAFTAAVDGGPSPVIAVRVAANGPRRVVGVGDSVPGGARIESFSLLPVVSIGAAGEVSFAVAPTTAGAGPEGLFVATAEP*
Ga0068861_1004245342	3300005719	Switchgrass Rhizosphere	SNFGLWPAINASGTIAFTAAVDDGPSPVIAVRVAAEGPRRIVGVGDSIAGGARIASLSLLPVVSIGGGGEVSFAVAPTTAEAGPEGLFVAP*
Ga0068861_1006458351	3300005719	Switchgrass Rhizosphere	RFSNFGLWPALGASGTIAFAASVDDGPSPVIIVRTAADGLRRVAGVGDRVPGGGRIATLTLLPVVSVNAGGAVSFAVAPTATGEGADGLFLAAPAP*
Ga0068851_108698491	3300005834	Corn Rhizosphere	AVALLGDAAPGGGRYSNFGLWPAINASGTIAFTAAVDDGPSPVIAVRVAAEGPRRIVGVGDSIAGGARIASLSLLPVVSIGGGGEVSFAVAPTTAEAGPEGLFVAP*
Ga0068870_101552731	3300005840	Miscanthus Rhizosphere	NFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRIASGGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVTPTTTGVGPEGLFLATAEP*
Ga0068862_1002728483	3300005844	Switchgrass Rhizosphere	IHDGRTQAVARLGDAAPGGGRYSNFGLWPAVNAKGAIAFTAAVDGGPSPVIAVRVSDGEARRVVGVGDSVPGGERIASLSLLPVVSIGAGGDVSFAVAPTTTGAGPEGLFVATAAAP*
Ga0068865_1004986512	3300006881	Miscanthus Rhizosphere	AAPGGGQYSNFGLWPVVNEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDSVPGGARIESLSLLPVVSIGAAGQISFAVAPTTTGAGPEGLFVATAEP*
Ga0068865_1021076572	3300006881	Miscanthus Rhizosphere	KGTIAFTAAVDGGPSPVIAVRMTANGPRRVISVGDSVPGGARIESLSLLPVVSIGAAGDISFAVTPTTTGAGPEGLFVATAEP*
Ga0075424_1010727401	3300006904	Populus Rhizosphere	NFGLWPVVAASGVIAFAGSVDDGPSPVIVVRTAAEGLRRVVGVGDSVPGGARIASLTLLPVVSVNAAGAVSFAVAPTAAGQGPEGVFLAPAP*
Ga0099827_101038383	3300009090	Vadose Zone Soil	ARLGDPAPGGGHFSNFGLWPAVGASGAIAFAGSVDGGPSPVIVVRTAAEGLRRVVGVGDRLPSGARIATLTLLPIVSTNRDGVVSFAVAPTATGEGPEGLFLAATAP*
Ga0111539_123378742	3300009094	Populus Rhizosphere	ERIGFGDRGTIVFHGQIKGVPTAAGIFAIRDGRIQAVARLGDAAPGGGHYSNFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRIASGGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDISFAVTPTTTGAGPEGLFVATAEP*
Ga0111538_109735562	3300009156	Populus Rhizosphere	QYSNFGLWPVVNEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDNVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTIGAGPEGLFLATADP*
Ga0105241_126898791	3300009174	Corn Rhizosphere	DQGTVVFHGQLKGAPTAAGIFAIHGGRTEAVARLGDAAPGGGQYSNFGLWPVVNEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDNVPGGARIASLSLLPVVSIGAAGDVSFAVAPTATGGGPEGIFVAAPEP*
Ga0105242_119814512	3300009176	Miscanthus Rhizosphere	GGQYSNFGLWPVVNEKGTIAFTAAVDGGPSPVIAVRIAASGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVTPTTTGVGPEGLFLATAEP*
Ga0134128_124567181	3300010373	Terrestrial Soil	IDEGRARVVALLGDPAPGGGTFSNFGLWPAVSTMGTIAFTASVDGGPSPVIVVRTGGDGLHRVVGVGDSVPGGARITSLSLLPVVSIGAGGAISFAAAPTATGGGPEGVFLAAP*
Ga0134122_123635271	3300010400	Terrestrial Soil	QIKGVPTAAGIFAIRDGRIQAVARLGDAAPGGGHYSNFGLWPVVNEKGTIAFTAAVDGGPSPVIAVRIAASGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGVGPEGLFVATAEP*
Ga0134123_106047972	3300010403	Terrestrial Soil	ARLGDAAPGGGHYSNFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRIAASGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVTPTTTGVGPEGLFLATAEP*
Ga0105246_107583281	3300011119	Miscanthus Rhizosphere	GAPTAAGIFAIRDGRTHAVARLGEAAPGGGQYSNFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRIAASGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVTPTTTGVGPEGLFLATAEP*
Ga0137389_104187531	3300012096	Vadose Zone Soil	LKAAPVAAAIFTIEDEQPRVVARLGDPAPGGGHFSNFGLWPAVGASGAIAFAGSVDGGPSPVIVVRTAAEGLRRVVGVGDRLPSGARIATLTLLPIVSINRDGAVSFAVAPTATGEGPEGLFLAEPAP*
Ga0137372_104929152	3300012350	Vadose Zone Soil	PAPGGGHFSNFGLWPAIGGGSIAFAASVDGGPSAVIIVRTGRDGLQRVAGVGDTLPNGGRIASFTLLPVVSVGAGGAMAFAVAPTATAEGSEGVFLAAPEP*
Ga0137360_108984391	3300012361	Vadose Zone Soil	IEDGRPRAVARLGDPAPGGGHFSNFGLWPAVGASGVVAFAGSVDGGPSPVIVVRTAADGLRRVVGVGDSLPSGARIATLTLLPVVSVNTGGAVSFAVAPTATGEGPEGLFLTTPGP*
Ga0137361_104281172	3300012362	Vadose Zone Soil	APGGGHFSNFGLWPAVGASGAIAFAASVDDGPSPVIVVRTAADGLRRVVGVGDSVPSGARIATLTLLPVVSVNTGGAVSFAVVPTATGEGPEGLFLATPGP*
Ga0157346_10189891	3300012480	Arabidopsis Rhizosphere	GGGRYSNFGLWPVVNAKGAIAFTAAVDGGPSPVIAVRVAAGAPRRVVGVGDSVPGGERIASLSLLPVVSIGAGGDLTFAVTPTTAGSGPEGLFVAAAAEP*
Ga0157282_103693611	3300012904	Soil	EGRLRAVARLGDAAPGGGRYSNFGLWPAVSANGTIAFTAAVDDGPSPVIAVRIAADGPQRVVGVGDDVPGGGRIASLSLLPVVSIGPAGDVSFAVAPTTADPGPEGLFVSAAP*
Ga0137396_112064962	3300012918	Vadose Zone Soil	APGGGHFSNFGLWPAVGASGVVAFAGSVDGGPSPVIVVRTAAEGLRRVVGVGDSLPSGARIATLTLLPVVSVNTDGAVSFAVAPTPTGEGPEGLFLATPGP*
Ga0137394_104655461	3300012922	Vadose Zone Soil	GLLKAAPVAAAIFTIEDGRPRAVARLGDPAPGGGHFSNFGLWPAVSASGVVAFAASVDDGPSPVIVVRTAADGLRRVVGVGDSLPSGARIATLTLLPVVSVNTAGAVSFAVAPTATGEGPEGLLLATPGP*
Ga0137394_104679241	3300012922	Vadose Zone Soil	LLKAAPVAAAIFTIEDGRPRAVARLGDPAPGGGHFSNFGLWPAVGASGVVAFAGSVDGGPSPVIVVRTAADGLRRVVGVGDSLPSGARIATLTLLPVVSVNTGGAVSFAVAPTATGEGPEGLFLTTPGP*
Ga0157378_101222303	3300013297	Miscanthus Rhizosphere	FHGQIKGVPTAAGIFAIRDGRIQAVARLGDAAPGGGHYSNFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRIAASGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVTPTTTGVGPEGLFLATAEP*
Ga0157378_103630953	3300013297	Miscanthus Rhizosphere	FGLWPVISERGAIAFTAAVDGGPSPVIAVRVAANGPRRVVGVGDSVPGGARIESFSLLPVVSIGAAGEVSFAVAPTTAGAGPEGLFVATAEP*
Ga0163162_112101392	3300013306	Switchgrass Rhizosphere	FAIRDGRVQAVARLGDAAPGGGRYSNFGLWPVISEKGTIAFTAAVDGGPSPVIAVRMAAGGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTAGAGPEGLFVTAAEP*
Ga0163162_134803862	3300013306	Switchgrass Rhizosphere	APGGGQYSNFGLWPVVNEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDSVPGGARIESLSLLPVVSIGAAGQISFAVAPTTTGAGPEGLFVATAEP*
Ga0157375_110705712	3300013308	Miscanthus Rhizosphere	LGDAAPGGGQYSNFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRMTANGPRRVISVGDSVPGGARIESLSLLPVVSIGAAGDISFAVTPTTTGAGPEGLFVATAEP*
Ga0157375_136374582	3300013308	Miscanthus Rhizosphere	SEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDSVPGGARIESLSLLPVVSIGAAGQISFAVAPTTTGAGPEGLFVATAEP*
Ga0157375_136928632	3300013308	Miscanthus Rhizosphere	VFHGQVKGGPVGAGIFAIQEGRIRAVALLGDAAPGGGRYSNFGLWPAINASGTIAFTAAVDDGPSPVIAVRVAAEGPRRIVGVGDSIAGGARIASLSLLPVVSIGGGGEVSFAVAPTTAEAGPEGLFVAP*
Ga0163163_125364231	3300014325	Switchgrass Rhizosphere	LKDASVAAGIFALREGRLRAVARLGDAAPGGGRYSNFGLWPAVSANGTIAFTAAVDDGPSPVIAVRIAADGPQRVVGVGDDVPGGGRIASLSLLPVVSIGPAGDVSFAVAPTTADPGPEGLFVSAAP*
Ga0157380_114298541	3300014326	Switchgrass Rhizosphere	IEDDRARLVARLGDAAPGGGAFSNFGLWPGISASGTIGFAASVDDGPSPVIVVRTSREGLQRVVGVGDALPDGARIASLTLFPIVSLGPSGAVSFAVAPTATGGGPEGVFVAAPAR*
Ga0157376_103922772	3300014969	Miscanthus Rhizosphere	AAPGGGQYSNFGLWPVISERGAIAFTAAVDGGPSPVIAVRVAANGPRRVVGVGDSVPGGARIESFSLLPVVSIGAAGEVSFAVAPTTAGAGPEGLFVATAEP*
Ga0157376_125889022	3300014969	Miscanthus Rhizosphere	VARLGDAAPGGGQYSNFGLWPVVNEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDSVPGGARIESLSLLPVVSIGAAGQISFAVAPTTTGAGPEGLFVATAEP*
Ga0137420_10206041	3300015054	Vadose Zone Soil	AVARLGDPAPGGGHFSNFGLWPAVGASGVVAFAGSVDGGPSPVIVVRTAPDGLRRVVGVGDSLPSGARIATLTLLPVVSVNTGGAVSFAVAPTATGEGPEGLFLTTPGP*
Ga0132257_1016247081	3300015373	Arabidopsis Rhizosphere	GDPAPGGGHFSNFGLWPAAGPSGVIAFAGSVDGGPSPVIIVRTAADGLRRVVGVGDSLPRGGRIATLTLLPVVSVNARGTVSFAVAPSATGEGPEGLFVATPEP*
Ga0132255_1053652752	3300015374	Arabidopsis Rhizosphere	RVIARLGDAAPGGGQYSNFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRIAAGGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGVGPEGLFVATAEP*
Ga0132255_1059539951	3300015374	Arabidopsis Rhizosphere	IVFHGQLKAAPVAAGIFAIDEGRARVVALLGDPAPGGGTFSNFGLWPAVSAMGTIAFTASVDGGPSPVIVVRTGGDGLHRVVGVGDSVPGGARITSLSLLPVVSIGAGGAISFAAAPTATGGGPEGVFLAAP*
Ga0163161_107703011	3300017792	Switchgrass Rhizosphere	YSNFGLWPVISERGAIAFTAAVDGGPSPVIAVRVAANGPRRVVGVGDSVPGGARIESFSLLPVVSIGAAGEVSFAVAPTTAGAGPEGLFVATAEP
Ga0184615_104330552	3300018059	Groundwater Sediment	SNFGLWPAVSTTGSIGFAASVDDGPSPIVIVRTGRDGLRRVVGVGDSLPGGGRIASLTLFPVVSMSPAGAVSFAVAPTAPSGGPEGVFLAAPAP
Ga0210379_100782592	3300021081	Groundwater Sediment	RFSNFGLWPAVSTAGSIGFAASVDDGPSPIVIVRTGRDGLRRVVGVGDSLPGGARIASLTLFPVVSVSAAGAVSFAVAPTATSGGPEGVFLAEPEP
Ga0247769_11640062	3300022904	Plant Litter	APGGGHYSNFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRIASGGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTAGAGPEGLFVASAEP
Ga0207697_100367651	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	RLGDTAPGGGQYSNFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRMAAGGPRRVVGVGDTVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTAGAGPEGLFVTAAEP
Ga0207656_103788492	3300025321	Corn Rhizosphere	TRAVARLGDAAPGGGQYSNFGLWPVISERGAIAFTAAVDGGPSPVIAVRVAANGPRRVVGVGDSVPGGARIESFSLLPVVSIGAAGEVSFAVAPTTAGAGPEGLFVATAEP
Ga0207656_105700802	3300025321	Corn Rhizosphere	RKGIRAVALLGDAAPGGGRYSNFGLWPAINASGTIAFTAAVDDGPSPVIAVRVAAEGPRRIVGVGDSIAGGARIASLSLLPVVSIGGGGEVSFAVAPTTAEAGPEGLFVAP
Ga0207645_100189281	3300025907	Miscanthus Rhizosphere	VAPGGGQYSNFGLWPVVNEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDNVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFLATADP
Ga0207643_105850972	3300025908	Miscanthus Rhizosphere	GIFAIEDGRTRAVARLGDEAPGGGHYSNFGLWPAVNARGTIAFTAAVDGGPSPVIAVRVATGGPRRVVGVGDSVPGGERIASLSLLPVVSIGAAGDVSFAVAPTTAGAGPEGLFVAPAAE
Ga0207662_111476261	3300025918	Switchgrass Rhizosphere	GGIFAKFSERLGFGDEGTIVFHGQLKDASVAAGIFALREGRLRAVARLGDAAPGGGRYSNFGLWPAVSANGTIAFTAAVDDGPSPVIAVRIAADGPQRVVGVGDDVPGGGRIASLSLLPVVSIGPAGDVSFAVAPTTADPGPEGLFVSAAP
Ga0207681_110967381	3300025923	Switchgrass Rhizosphere	KGAPTAAGIFAIRDGRTHAVARLGEAAPGGGQYSNFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDSVPGGARIESLSLLPVVSIGAAGQISFAVAPTTTGAGPEGLFVATAEP
Ga0207659_100869093	3300025926	Miscanthus Rhizosphere	APGGGRYSNFGLWPAINASGTIAFTAAVDDGPSPVIAVRVAAEGPRRIVGVGDSIAGGARIASLSLLPVVSIGGGGEVSFAVAPTTAEAGPEGLFVAP
Ga0207701_102501563	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	GTIVFHGQLKDASVAAGIFALREGRLRAVARLGDAAPGGGRYSNFGLWPAVSANGTIAFTAAVDDGPSPVIAVRIAADGPQRVVGVGDDVPGGGRIASLSLLPVVSIGPAGDVSFAVAPTTADPGPEGLFVSAAP
Ga0207644_105886021	3300025931	Switchgrass Rhizosphere	GGRFSNFGLWPAVSATGAIGFAASVDDGPSPVIVVRTGREGLHRVVGVGDPLPGGARIASLTLLPVVSLGGTGTVSFAVAPTATGGGPEGVFVAEAEP
Ga0207644_107324012	3300025931	Switchgrass Rhizosphere	KDASVAAGIFALREGRLRAVARLGDAAPGGGRYSNFGLWPAVSANGTIAFTAAVDDGPSPVIAVRIAADGPQRVVGVGDDVPGGGRIASLSLLPVVSIGPAGDVSFAVAPTTADPGPEGLFVSAAP
Ga0207644_118392592	3300025931	Switchgrass Rhizosphere	AAGIFAIRDGRIQAVARLGDAAPGGGHYSNFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRIASGGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTAGAGPEGLFVASAEP
Ga0207686_114806702	3300025934	Miscanthus Rhizosphere	VVSEKGTIAFTAAVDGGPSPVIAVRIAASGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVTPTTTGVGPEGLFLATAEP
Ga0207691_101560251	3300025940	Miscanthus Rhizosphere	APGGGQYSNFGLWPVVNEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDNVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFLATADP
Ga0207691_107606071	3300025940	Miscanthus Rhizosphere	PTAAGIFAIRDGRTHAVARLGDAAPGGGQYSNFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDSVPGGARIESLSLLPVVSIGAAGQISFAVAPTTTGAGPEGLFVATAEP
Ga0207711_102753543	3300025941	Switchgrass Rhizosphere	QAVARLGDVAPGGGQYSNFGLWPVVNEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDNVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFLATADP
Ga0207651_100925741	3300025960	Switchgrass Rhizosphere	GLWPVVNEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDNVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFLATADP
Ga0207668_114814271	3300025972	Switchgrass Rhizosphere	GTVVFHGQLKGAPTAAGIFAIEDGRTRAVARLGDEAPGGGHYSNFGLWPAVNARGTIAFTAAVDGGPSPVIAVRVATGGPRRVVGVGDSVPGGERIASLSLLPVVSIGAAGDVSFAVAPTTAGAGPEGLFVAPAAEP
Ga0207639_111164062	3300026041	Corn Rhizosphere	GRTQAVARLGDVAPGGGQYSNFGLWPVVNEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDNVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFLATADP
Ga0207708_107463251	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	HGQLKGAPAAAGIFAIRDGRTQAVARLGDTAPGGGQYSNFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRIAASGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVTPTTTGVGPEGLFLATAEP
Ga0207641_100263691	3300026088	Switchgrass Rhizosphere	RGTVVFHGQLKGAPKAAGIFAIRDGRTQAVARLGDAAPGGGQYSNFGLWPVVNEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDNVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFLATADP
Ga0207641_120121662	3300026088	Switchgrass Rhizosphere	IRDGRTQAVARLGDAAPGGGQYSNFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRMTANGPRRVISVGDSVPGGARIESLSLLPVVSIGAAGDISFAVTPTTTGAGPEGLFVATAEP
Ga0207648_105786941	3300026089	Miscanthus Rhizosphere	TAAGIFAIRDGRIQAVARLGDAAPGGGHYSNFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRIASGGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTAGAGPEGLFVASAEP
Ga0207676_101673781	3300026095	Switchgrass Rhizosphere	ERIGFGDRGTVVFHGQLKGAPKAAGIFAIRDGRTQAVARLGDVAPGGGQYSNFGLWPVVNEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDNVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFLATADP
Ga0207676_120754301	3300026095	Switchgrass Rhizosphere	SVAAGIFALREGRVRAVARLGDAAPGGGRYSNFGLWPAVSANGTIAFTAAVDDGPSPVIAVRIAADGPQRVVGVGDDVPGGGRIASLSLLPVVSIGPAGDVSFAVAPTTADPGPEGLFVSAAP
Ga0209350_10938732	3300026277	Grasslands Soil	ARLGDPAPGGGHFSNFGLWPAVGASGAIAFAASVDDGPSPVIVVRTAADGLRRVVGVGDSVPSGARIATLTLLPVVSVNTGGAVSFAVVPTATGEGPEGLFLATPGP
Ga0209472_12753051	3300026323	Soil	IEDGRPRVVARLGDPAPGGGHFSNFGLWPAVGASGAIAFAGSVDDGPSPVIVVRTAADGLRRVVGVGDRVPSGARIATLTLLPVVSVNTGGAVSFAVAPTATGEGPEGLFLATPGP
Ga0209388_11936232	3300027655	Vadose Zone Soil	AAAIFTIEDGRPRAVARLGDPAPGGGHFSNFGLWPAVGASGVVAFAGSVDGGPSPVIVVRTAPDGLRRVVGVGDSLPSGARIATLTLLPVVSVNTGGAVSFAVAPTATGEGPEGLFLTTPGP
Ga0209590_104750821	3300027882	Vadose Zone Soil	TIEDNQPRVVARLGDPAPGGGHFSNFGLWPAVGASGAIAFAGSVDGGPSPVIVVRTAAEGLRRVVGVGDRLPSGARIATLTLLPIVSTNRDGVVSFAVAPTATGEGPEGLFLAATAP
Ga0209382_122104722	3300027909	Populus Rhizosphere	GDPAPGGGHFSHFGLWPAVGASGAVAFAGSVDGGPSPMIVVRTAADGLRRVVGVGDRLPGGGRIATLTLLPVVSVNSAGAVSFAVAPTATGEGAEGVFLAAPAP
Ga0247821_106564032	3300028596	Soil	VVFHGQLKGAPKAAGIFAIRDGRTQAVARLGDAAPGGGQYSNFGLWPVVNEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDNVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFLATADP
Ga0247827_109491991	3300028889	Soil	GGGHYSNFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRMAANGPRRVVGVGDSVPGGARIASLSLLPVVSIGGAGDVSFAVAPTTTGAGPEGLFVAAAEP
Ga0310888_106677381	3300031538	Soil	RAVARLGDAAPGGGQYSNFGLWPVISEKGTIAFTAAVDGGPSPVIAVRMAAGGPRRVVGVGDTVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFVTAAEP
Ga0310813_110874461	3300031716	Soil	RLGDTAPGGGQYSNFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRIAASGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVTPTTTGVGPEGLFLATAEP
Ga0307468_1013042541	3300031740	Hardwood Forest Soil	TVVFHGQLKSAPTAAGIFAIRDGRTQAIALLGDAAPGGGNYSNFGLWPVVSEKGTVAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDSVPGGARIASLSLLPVVSIGAAGDVSFAVTPTTTGVGPEGLFVATAEP
Ga0307473_108078371	3300031820	Hardwood Forest Soil	AAAIFTIEDGRPRAVARLGDPAPGGGHFSNFGLWPAVGASGAIAFAGSVDDGPSPVIVVRAAADGLRRVVGVGDRLPSGARIATLTLLPVVSVNTGGTVSFAVAPTATGEGPEGLFVATG
Ga0307473_112607562	3300031820	Hardwood Forest Soil	TQAVARLGDEAPGGGRYSNFGLWPVVSAKGAIAFTAAVDGGPSPVIAVRVAAGAPRRVVGVGDSVPGGERIASLSLLPVVSIGAGGDVSFAVAPTTTGAGPEGLFVATAEP
Ga0310907_105635981	3300031847	Soil	RIGIGDQGTIVFHGQLKGAPAAAGIFAIRDGRTQAVARLGDAAPGGGQYSNFGLWPVVNEKGTIAFTAAVDGGPSPVIAVRMAASGPRRVVGVGDNVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFLATADP
Ga0307412_117199141	3300031911	Rhizosphere	LGDAAPGGGTLSNFGLWPAMGASGVIAFTASVDDGPSPLIVVRTDGDRLRRVVGVGDVLPGGARVATLTLLPVVSVNTAGAVSFAVAPTATGEGPEGVFVAAPEP
Ga0310902_110287651	3300032012	Soil	GLWPVISEKGTIAFTAAVDGGPSPVIAVRMAAGGPRRVVGVGDTVPGGARIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFVTAAEP
Ga0310899_105293041	3300032017	Soil	PAVSTKGVIAFTAAVDGGPSPVIVVLVAGDGPRRIVGVGDSVPGGTPIASLTLLPVVSVGAAGVVSFAVAPTATGGGPEGLFVAAPEP
Ga0310890_102232072	3300032075	Soil	GGTLSNFGLWPAVSTKGVIAFTAAVDGGPSPVIVVLVAGDGPRRVVGVGDSVPGGTPIASLTLLPVVSVGAAGVVSFAVAPTATGGGPEGLFVAAPEP
Ga0310895_100340193	3300032122	Soil	RLGDAAPGGGRYSNFGLWPAVSAKGAIAFTAAVDGGPSPVIAVRMSDGKPRRVVGVGDSVPGGERIASLSLLPVVSIGAAGDVSFAVAPTTTGAGPEGLFVATSAAP
Ga0247829_100878592	3300033550	Soil	LGDAAPGGGQYSNFGLWPVVSEKGTIAFTAAVDGGPSPVIAVRMTANGPRRVISVGDSVPGGARIESLSLLPVVSIGAAGDISFAVTPTTTGAGPEGLFVATAEP
Ga0373958_0075582_412_738	3300034819	Rhizosphere Soil	VARLGDAAPGGGTLSNFGLWPAVSTKGVIAFTAAVDGGPSPVIVVLVAGDGPRRVVGVGDSVPGGTPIASLTLLPVVSVGAAGVVSFAVAPTATGGGPEGLFVAAPEP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F069770

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences