Metagenome / Metatranscriptome Family F069725

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069725
Family Type	Metagenome / Metatranscriptome
Number of Sequences	123
Average Sequence Length	58 residues
Representative Sequence	MKTRVIIEYDLPAGDRVVLRDREEQRWTASETVLALPGSAKVKVELLEAPLMPAV
Number of Associated Samples	75
Number of Associated Scaffolds	123

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	76.42 %
% of genes near scaffold ends (potentially truncated)	30.89 %
% of genes from short scaffolds (< 2000 bps)	86.99 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (73.171 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (57.724 % of family members)
Environment Ontology (ENVO)	Unclassified (47.154 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (57.724 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 22.89% Coil/Unstructured: 77.11%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF06689	zf-C4_ClpX	2.44
PF02627	CMD	1.63
PF13817	DDE_Tnp_IS66_C	0.81
PF02515	CoA_transf_3	0.81
PF12833	HTH_18	0.81
PF07690	MFS_1	0.81
PF02738	MoCoBD_1	0.81
PF13683	rve_3	0.81
PF13469	Sulfotransfer_3	0.81
PF01799	Fer2_2	0.81
PF14534	DUF4440	0.81
PF06823	DUF1236	0.81
PF01135	PCMT	0.81
PF00005	ABC_tran	0.81
PF12536	DUF3734	0.81
PF13360	PQQ_2	0.81
PF13759	2OG-FeII_Oxy_5	0.81
PF07369	DUF1488	0.81
PF06904	Extensin-like_C	0.81

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	1.63
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	1.63
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.81
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.81
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.81
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	0.81
COG3921	Uncharacterized conserved protein, contains Extensin-like_C domain	Function unknown [S]	0.81
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.17 %
All Organisms	root	All Organisms	26.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.17 %
cellular organisms	root	All Organisms → cellular organisms	26.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.17 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	26.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	18.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.17 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16.26 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.17 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.76 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.17 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.07 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	1.63 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.81 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.81 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.17 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.07 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	1.63 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.81 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.81 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.81 %
unclassified Beijerinckiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.17 %
unclassified Methylocystis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis	0.81 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.81 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.81 %
Methylocystis heyeri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis heyeri	0.81 %
Rhodoplanes roseus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes roseus	0.81 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.81 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.17 %
Methylocystis sp. B8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. B8	0.81 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.81 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.81 %
Methylocystis heyeri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis heyeri	0.81 %
Rhodoplanes roseus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes roseus	0.81 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.81 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10063784	Not Available	940	Open in IMG/M
3300002917\|JGI25616J43925_10201631	Not Available	768	Open in IMG/M
3300002917\|JGI25616J43925_10391723	Not Available	511	Open in IMG/M
3300004633\|Ga0066395_10205664	Not Available	1033	Open in IMG/M
3300005332\|Ga0066388_100045281	All Organisms → cellular organisms → Bacteria	4424	Open in IMG/M
3300005332\|Ga0066388_100157746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2855	Open in IMG/M
3300005332\|Ga0066388_100280053	All Organisms → cellular organisms → Bacteria	2311	Open in IMG/M
3300005332\|Ga0066388_108788259	Not Available	501	Open in IMG/M
3300005764\|Ga0066903_100001932	All Organisms → cellular organisms → Bacteria → Proteobacteria	15714	Open in IMG/M
3300005764\|Ga0066903_101063314	Not Available	1487	Open in IMG/M
3300005764\|Ga0066903_106387131	Not Available	615	Open in IMG/M
3300007258\|Ga0099793_10068601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1598	Open in IMG/M
3300007258\|Ga0099793_10150127	Not Available	1103	Open in IMG/M
3300007258\|Ga0099793_10674340	Not Available	521	Open in IMG/M
3300007265\|Ga0099794_10164243	Not Available	1130	Open in IMG/M
3300007788\|Ga0099795_10031220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1833	Open in IMG/M
3300007788\|Ga0099795_10087953	Not Available	1200	Open in IMG/M
3300007788\|Ga0099795_10090294	Not Available	1187	Open in IMG/M
3300007788\|Ga0099795_10287543	Not Available	719	Open in IMG/M
3300007788\|Ga0099795_10311621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	695	Open in IMG/M
3300009038\|Ga0099829_11044257	Not Available	677	Open in IMG/M
3300009088\|Ga0099830_10792540	Not Available	782	Open in IMG/M
3300009088\|Ga0099830_11622874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	539	Open in IMG/M
3300009089\|Ga0099828_11870897	Not Available	527	Open in IMG/M
3300009090\|Ga0099827_11426647	Not Available	603	Open in IMG/M
3300009143\|Ga0099792_10037460	Not Available	2289	Open in IMG/M
3300009143\|Ga0099792_10039262	All Organisms → cellular organisms → Bacteria	2247	Open in IMG/M
3300009143\|Ga0099792_10477480	Not Available	777	Open in IMG/M
3300009792\|Ga0126374_11457926	Not Available	560	Open in IMG/M
3300010043\|Ga0126380_10543305	Not Available	902	Open in IMG/M
3300010048\|Ga0126373_11155779	Not Available	840	Open in IMG/M
3300010159\|Ga0099796_10366125	Not Available	625	Open in IMG/M
3300010159\|Ga0099796_10393202	Not Available	606	Open in IMG/M
3300010159\|Ga0099796_10459148	Not Available	567	Open in IMG/M
3300010358\|Ga0126370_10509343	Not Available	1019	Open in IMG/M
3300010360\|Ga0126372_10427901	Not Available	1218	Open in IMG/M
3300010360\|Ga0126372_10564595	Not Available	1084	Open in IMG/M
3300010360\|Ga0126372_12134946	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300010362\|Ga0126377_10461626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1294	Open in IMG/M
3300010362\|Ga0126377_12825289	Not Available	560	Open in IMG/M
3300010366\|Ga0126379_10481865	Not Available	1308	Open in IMG/M
3300010366\|Ga0126379_11481349	Not Available	784	Open in IMG/M
3300010366\|Ga0126379_13574974	Not Available	521	Open in IMG/M
3300010376\|Ga0126381_104721706	Not Available	524	Open in IMG/M
3300010398\|Ga0126383_10092110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	2682	Open in IMG/M
3300010398\|Ga0126383_13614231	Not Available	505	Open in IMG/M
3300011269\|Ga0137392_10630558	Not Available	889	Open in IMG/M
3300011269\|Ga0137392_11274435	Not Available	594	Open in IMG/M
3300011269\|Ga0137392_11331860	Not Available	577	Open in IMG/M
3300011271\|Ga0137393_11659706	Not Available	528	Open in IMG/M
3300012189\|Ga0137388_10724665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	923	Open in IMG/M
3300012199\|Ga0137383_10948552	Not Available	628	Open in IMG/M
3300012202\|Ga0137363_10347228	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300012202\|Ga0137363_11051407	Not Available	692	Open in IMG/M
3300012203\|Ga0137399_10513481	Not Available	1005	Open in IMG/M
3300012203\|Ga0137399_10694970	Not Available	856	Open in IMG/M
3300012205\|Ga0137362_10190839	Not Available	1762	Open in IMG/M
3300012205\|Ga0137362_10478709	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300012205\|Ga0137362_10512023	Not Available	1037	Open in IMG/M
3300012205\|Ga0137362_11015455	Not Available	706	Open in IMG/M
3300012206\|Ga0137380_11302969	Not Available	611	Open in IMG/M
3300012209\|Ga0137379_11818073	Not Available	503	Open in IMG/M
3300012211\|Ga0137377_10003709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	11901	Open in IMG/M
3300012361\|Ga0137360_10528568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1006	Open in IMG/M
3300012361\|Ga0137360_10856244	Not Available	783	Open in IMG/M
3300012362\|Ga0137361_10305081	Not Available	1457	Open in IMG/M
3300012362\|Ga0137361_10800682	Not Available	858	Open in IMG/M
3300012363\|Ga0137390_11714130	Not Available	562	Open in IMG/M
3300012582\|Ga0137358_10477073	Not Available	841	Open in IMG/M
3300012685\|Ga0137397_10110048	Not Available	2025	Open in IMG/M
3300012917\|Ga0137395_10147353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. B8	1609	Open in IMG/M
3300012918\|Ga0137396_10232679	Not Available	1358	Open in IMG/M
3300012924\|Ga0137413_10389501	Not Available	999	Open in IMG/M
3300012925\|Ga0137419_10286831	All Organisms → cellular organisms → Bacteria → Proteobacteria	1254	Open in IMG/M
3300012925\|Ga0137419_10369518	Not Available	1114	Open in IMG/M
3300012927\|Ga0137416_10627144	Not Available	939	Open in IMG/M
3300012927\|Ga0137416_10793438	Not Available	837	Open in IMG/M
3300012944\|Ga0137410_11349204	Not Available	618	Open in IMG/M
3300012944\|Ga0137410_11424088	Not Available	603	Open in IMG/M
3300012948\|Ga0126375_11396273	Not Available	593	Open in IMG/M
3300015241\|Ga0137418_10266718	Not Available	1445	Open in IMG/M
3300015242\|Ga0137412_10013592	All Organisms → cellular organisms → Bacteria	6589	Open in IMG/M
3300015242\|Ga0137412_11149319	Not Available	547	Open in IMG/M
3300015245\|Ga0137409_10111840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes roseus	2524	Open in IMG/M
3300017970\|Ga0187783_10045673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3239	Open in IMG/M
3300018468\|Ga0066662_10752220	Not Available	938	Open in IMG/M
3300020199\|Ga0179592_10212958	Not Available	874	Open in IMG/M
3300020581\|Ga0210399_10907806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	714	Open in IMG/M
3300020581\|Ga0210399_11112048	Not Available	632	Open in IMG/M
3300020582\|Ga0210395_10695879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	760	Open in IMG/M
3300021086\|Ga0179596_10008765	All Organisms → cellular organisms → Bacteria	3217	Open in IMG/M
3300021086\|Ga0179596_10119222	Not Available	1223	Open in IMG/M
3300021086\|Ga0179596_10165823	Not Available	1059	Open in IMG/M
3300021086\|Ga0179596_10219678	Not Available	930	Open in IMG/M
3300021307\|Ga0179585_1028519	Not Available	569	Open in IMG/M
3300021404\|Ga0210389_10134492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis heyeri	1914	Open in IMG/M
3300021560\|Ga0126371_11308284	All Organisms → cellular organisms → Bacteria → Proteobacteria	858	Open in IMG/M
3300022527\|Ga0242664_1070834	Not Available	673	Open in IMG/M
3300026304\|Ga0209240_1157882	Not Available	700	Open in IMG/M
3300026320\|Ga0209131_1018219	All Organisms → cellular organisms → Bacteria	4245	Open in IMG/M
3300026320\|Ga0209131_1285918	Not Available	622	Open in IMG/M
3300026340\|Ga0257162_1022818	Not Available	757	Open in IMG/M
3300026356\|Ga0257150_1001484	All Organisms → cellular organisms → Bacteria	3221	Open in IMG/M
3300026356\|Ga0257150_1054060	Not Available	597	Open in IMG/M
3300026376\|Ga0257167_1052166	Not Available	629	Open in IMG/M
3300026446\|Ga0257178_1056233	Not Available	519	Open in IMG/M
3300026481\|Ga0257155_1004900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1649	Open in IMG/M
3300026481\|Ga0257155_1036251	Not Available	747	Open in IMG/M
3300026481\|Ga0257155_1056576	Not Available	618	Open in IMG/M
3300026489\|Ga0257160_1033368	Not Available	857	Open in IMG/M
3300026489\|Ga0257160_1034837	Not Available	841	Open in IMG/M
3300026494\|Ga0257159_1079634	Not Available	567	Open in IMG/M
3300026508\|Ga0257161_1056312	Not Available	798	Open in IMG/M
3300026508\|Ga0257161_1122352	Not Available	545	Open in IMG/M
3300026557\|Ga0179587_10488898	Not Available	807	Open in IMG/M
3300026557\|Ga0179587_11060371	Not Available	534	Open in IMG/M
3300027512\|Ga0209179_1024509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1197	Open in IMG/M
3300027862\|Ga0209701_10449674	Not Available	709	Open in IMG/M
3300027882\|Ga0209590_10790590	Not Available	603	Open in IMG/M
3300027903\|Ga0209488_10214176	Not Available	1450	Open in IMG/M
3300028536\|Ga0137415_10170000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2010	Open in IMG/M
3300028536\|Ga0137415_10192155	Not Available	1863	Open in IMG/M
3300032076\|Ga0306924_10512790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1365	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	92.68%
Loam	Environmental → Terrestrial → Soil → Loam	6.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	71.54%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	57.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.81%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021307	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026376	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B	Environmental	Open in IMG/M
3300026446	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-B	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100637841	3300000597	Forest Soil	QTGSKMKTRVIIEYDLPPGDCVALRDQEEQRWTTCETVLALPGSAKVKVELVGLLEGRPLLPAM*
JGI25616J43925_102016311	3300002917	Grasslands Soil	MKTRVIIEYDLPRGCAAGDRVVIRDQEEQRWTKCXTVLALPGSATVRVELLEIPSMSAM*
JGI25616J43925_103917231	3300002917	Grasslands Soil	MVTKQMKTRVIIETIFRAAGDRVVVRDQEEQRWITCETVLALPGPATVKVELQD
Ga0066395_102056642	3300004633	Tropical Forest Soil	MRARVIIEYHLPRSCAAGDRVVIRDQEVQRWTRSETVLALPGSATVTVELVELLDVPLMPTT*
Ga0066388_1000452812	3300005332	Tropical Forest Soil	MKTRVTIEYDLPHGSDRVVMRDREEQRWITSETVLALPGSTTVKVELLEAPLMPAM*
Ga0066388_1001577468	3300005332	Tropical Forest Soil	DEAMKTRVIIEYDLPRSCGAGDRVVVRDQEEQRWVTCETVLALPGSATVKVELLDVPLMVAV*
Ga0066388_1002800535	3300005332	Tropical Forest Soil	MKTRVIIEYDLPPGDCVVLRDREEQRWITCETVLALPGSARVKVEVVDLLEGRPLLPAL*
Ga0066388_1087882591	3300005332	Tropical Forest Soil	DEAMKTRVIIEYDLPRSCGAGDRVVVRDQEEQRWVTCETVLALPGSATVKVELLDVPLMAAV*
Ga0066903_1000019325	3300005764	Tropical Forest Soil	MKTRVIIEYNLPRSCAAGDRVVVRDQEEQRWTRSDTVLALPGSATVTVELLELTDVPLMATT*
Ga0066903_1010633143	3300005764	Tropical Forest Soil	MKTRVIIEYDLPPGDCVVLRDREEQRWITCETVLALPGSARVKVEVVDLLEGRSLLPAL*
Ga0066903_1063871311	3300005764	Tropical Forest Soil	MKTRVIIEYDLPGSCAAGDRVVVRDQEEQRWTKCETILALPGSATLTVELLDVPLMPAM*
Ga0099793_100686012	3300007258	Vadose Zone Soil	MKTRVIIEYDLPCVAAGDRIVVRDQEEQRWITCETVLALRGSTTVKVELLDVPLMAAV*
Ga0099793_101501271	3300007258	Vadose Zone Soil	SAPGFWLGEWGRSKMKTRVIIEYNLPAGDCVALREREEQRWTASETVLSLPGSAMVKVELLEGPNNENFRPLLPAM*
Ga0099793_106743401	3300007258	Vadose Zone Soil	MKTRVIIEYDLPAGDCVALWEREEQRWTASETLLSLPGSAKVRVVLLEAPLMPAV*
Ga0099794_101642432	3300007265	Vadose Zone Soil	MKIRVIIEYDLPAGDRVVLRDREEQRWTASETVLALPGSAKVRVELLEAPLMPAV*
Ga0099795_100312201	3300007788	Vadose Zone Soil	MKTRVIIEYDLPRSCAAGDSVAVRDQEEQRWTRSETVLALPGSATVKVEVLEVQLMRAAV
Ga0099795_100879531	3300007788	Vadose Zone Soil	MKTRVVIEYDLPAGDGVALREREEQRWTASDTVLSLPGSATVKVELLDGRPLLPAM*
Ga0099795_100902941	3300007788	Vadose Zone Soil	MKTRVIIEYNLPAGDCVALREREEQRWTASETVLSLPGSAMVKVELVGLLDERPLLPAM*
Ga0099795_102875433	3300007788	Vadose Zone Soil	MKTRVIIEYDLPRGCAAGDRVVVRDQEEQRWITCETVLALPGTATVKVELVD
Ga0099795_103116211	3300007788	Vadose Zone Soil	MKTRVIIEYDLPPGDRAVLRDREEQRWTASETVLALPGSATVKVEVLEVQLMPAV*
Ga0099829_110442571	3300009038	Vadose Zone Soil	MKTRVIIEYDIPAGDRVVIRDREEQRWTASETVLALPGSAKVKVELLEAPLMPAV*
Ga0099830_107925401	3300009088	Vadose Zone Soil	VALREREEQRWTASETVLSLPGSAMVKVELLEGPNNENFRPLLPAM*
Ga0099830_116228741	3300009088	Vadose Zone Soil	VIIEYDILPGDNVVLRDREEQRWITCATVLALPGSPTVKVELLERPLMPAI*
Ga0099828_118708971	3300009089	Vadose Zone Soil	MKTRVIIEYDLPPGDRVVLRDREEQRWTASETVLALPGSATVKVEVLEVQLMPAV*
Ga0099827_114266472	3300009090	Vadose Zone Soil	MKTRVVIEYDLPAGDGVALREREEQRWTASDTVLSLPGSATVKVELVELLDGRPLLPAM*
Ga0099792_100374602	3300009143	Vadose Zone Soil	MKTRVIIEYNLPAGDCVALREREEQRWTASETVLSLPGSAMVKVELLEGPNNENFRPLLPAM*
Ga0099792_100392624	3300009143	Vadose Zone Soil	MKTRVIIEYDLPAGDCVALWEREEQRWTASETLLSLPGSAKVRVELLEAPLMPAV*
Ga0099792_104774802	3300009143	Vadose Zone Soil	MKTRVIIEYDLPRGCAAGDRVVIRDQEEQRWTKCETVLALPGSATVRVELLEIPLMSAM*
Ga0126374_114579261	3300009792	Tropical Forest Soil	PGSKTIRTGVVGERGRRPMKTRVTIEYDLPHGSDRVVMRDREEQRWITSETVLALPGSTTVKVELLEAPLMPAM*
Ga0126380_105433051	3300010043	Tropical Forest Soil	MKTRVIIEYDLPRSCGAGDRVVVRDQEEQRWVTCETMLALPGSATVKVELLDVPLMAAV*
Ga0126373_111557792	3300010048	Tropical Forest Soil	MKTRVIIEYNLPRSCAAGDRVVIRDQEVQRWTRSETVLALQGSATVTVELVELLDVPLMPTT*
Ga0099796_103661251	3300010159	Vadose Zone Soil	PGFWLGEWGRSKMKTRVIIEYNLPAGDCVALREREEQRWTASETVLSLPGSAMVKVELVGLLDERPLLPAM*
Ga0099796_103932021	3300010159	Vadose Zone Soil	MKTRVIIEYDLPPGDRVVLRDREEQRWTASETVLALPGSATVKVEVLEVQLMRAAV*
Ga0099796_104591482	3300010159	Vadose Zone Soil	MKTRVIIEYDLPRSCAAGDRVAVRDQEEQRWTRSETVLALPGSALLEAPLMPAM*
Ga0126370_105093431	3300010358	Tropical Forest Soil	MGMKQMKTRVIIEYDLPRSCGAGDRVVVRDQEEQRWVTCETVLALPGSATVKVELLDVPLMAAV*
Ga0126372_104279011	3300010360	Tropical Forest Soil	MKTRVIIEYDLPTGDCVALREREEQRWITCETLLALPGSAMLKVELVEQMVG*
Ga0126372_105645953	3300010360	Tropical Forest Soil	MKTRVIIEYDLPRSCGAGDRVVVRDQEEQRWVTCETVLALPGSATVKVELLDVSLMAAV*
Ga0126372_121349461	3300010360	Tropical Forest Soil	MKTRVIIEYDLPRGCGAGDRVVVRDQEEQRWVTCETVLALPGSATVKV
Ga0126377_104616262	3300010362	Tropical Forest Soil	MKTRVTIEYDLPHGSDRVVMRDREEQRWITSETVLALPGSTTVKVELLEAPLMPAI*
Ga0126377_128252891	3300010362	Tropical Forest Soil	MKTRVIIEYDLPPGDHVAQQEREEQRWITCETVLALPGSATVKVQLVDRLEGRLLLPAV*
Ga0126379_104818651	3300010366	Tropical Forest Soil	MKTRVIIEYDLPAGDHVVIRDREEQRWIASETVLALPGSPTVKVELLERPLMPAG*
Ga0126379_114813491	3300010366	Tropical Forest Soil	MKTRVIIEYNLPRSCAAGDRVVIRDQEVQRWTRSETVLALQGSATVTVELVELLDVPLMPTT
Ga0126379_135749741	3300010366	Tropical Forest Soil	MKKMKARVIIEYDLLPGDRIVVRDREEQRWTTCKTLLALPGSATVKVELLEVPLMPGHEA
Ga0126381_1047217061	3300010376	Tropical Forest Soil	MKTRVIIEYDLPPGDSVALRDREEQRWITSKTVLALPGSAMVKVELLDGPLMPAVGPLSRRVS*
Ga0126383_100921103	3300010398	Tropical Forest Soil	MKTRVIIEYDLLPGDSVVLRDREEQRWITSETVLALRGSVMVKVELLDGPLMPAVAPLSRPAQGARDR*
Ga0126383_136142311	3300010398	Tropical Forest Soil	MKTRVIIEYNLPRSCAAGDRVVVRDQEEQRWTRSDTVLALPGSATVTVELLELADVPLMATT*
Ga0137392_106305581	3300011269	Vadose Zone Soil	MKTRVVIEYNLPAGDRVALREREEQRWTASDTVLTLPGSVTVKVELVELLDGRPLLPAM*
Ga0137392_112744351	3300011269	Vadose Zone Soil	MEPGSNRKQMKTRVIIEYDILPGDNVVLRDREEQRWITCETVLALPGSPTVKVELLERPLMPAI*
Ga0137392_113318601	3300011269	Vadose Zone Soil	MKTRVIIEYDLPRSCAAGDRVAVRDQEEQRWTRSETVLALPGSATVKVKVEL
Ga0137393_116597061	3300011271	Vadose Zone Soil	MKTRVIIEYDLPRSCAAGDRVAVRDQEEQRWTRSETVLALPGSATVKVKVELLEAPLMPAM*
Ga0137388_107246651	3300012189	Vadose Zone Soil	MKTRVIIEYDLPRTFAAGDRIVVRDQEEQRWTKCETVLALPGSATVKVELLDVPLMATV*
Ga0137383_109485522	3300012199	Vadose Zone Soil	MKTRVIIEYDLPSSFAGGDRVVVRDQEEQRWTRSETVLALPGSASVSVELLEVPLVPAV*
Ga0137363_103472281	3300012202	Vadose Zone Soil	MKTRVIIEYDLPAGDCVALQDREEQRWTASETVLSLPGSATVKVELLDGRPLLPAM*
Ga0137363_110514072	3300012202	Vadose Zone Soil	MKTRVIIEYDLPAGDHVVVRDREEQRWITSETVLALPGSPIVKVKLLERPLMLA*
Ga0137399_105134811	3300012203	Vadose Zone Soil	MRTRVVIEYASLPGDRVVLRDREEQRWTASETVLSLPGSATVKVEVLEGPNDEKVRPRRPLIPAI*
Ga0137399_106949702	3300012203	Vadose Zone Soil	MKTRVVIEYDLPAGDGVALREREEQRWTASETVLSLPGSATVKVELVELLDGRPLLPAM*
Ga0137362_101908393	3300012205	Vadose Zone Soil	MKTRVIIEYDILPGDNVVLRDREEQRWITCETVLALPGSPTVKVELLERPLMPAV*
Ga0137362_104787091	3300012205	Vadose Zone Soil	MKTRVIIEYDLPAGDCVALQDREEQRWTASETVLSLPGSATVKVE
Ga0137362_105120232	3300012205	Vadose Zone Soil	MKTRVIIEYNLPSGDRVVVRDQEEQRWAKSETVLALPGSTTVKVEVLERPLVPVV*
Ga0137362_110154551	3300012205	Vadose Zone Soil	MKTRVIIEYDLPRGCAAGDRVVIRDQEEQRWTKCETVLALPGSATVRVELLEIP
Ga0137380_113029691	3300012206	Vadose Zone Soil	MKTRVIIEYDLPSSFAGGDRVVVRDQEEQRWTRSETVLALPGSASVSVEL
Ga0137379_118180731	3300012209	Vadose Zone Soil	MRTRVIIEYDIPRSFAVGDHIVVRDQEEQRWTKCETVLALPGSATVTVELLEVPLMPA
Ga0137377_100037095	3300012211	Vadose Zone Soil	MRTRVIIEYDIPRSFAVGDHIVVRDQEEQRWTKCETVLALPGSATVTVELLEVPLMPAM*
Ga0137360_105285682	3300012361	Vadose Zone Soil	MKTRVIIEYNLPSGDRVVVRDQEEQRWTKCETVLALPGSATVTVELLEVPLMATV*
Ga0137360_108562441	3300012361	Vadose Zone Soil	MKTRVIIEYDLPAGDCVALQDREEQRWTASETVLSLPGSATVKVELV
Ga0137361_103050813	3300012362	Vadose Zone Soil	MKTRVIIEYDLPAGDHVVVRDREEQRWITSETVLALPGSPTVKVELLERPLMPAV*
Ga0137361_108006823	3300012362	Vadose Zone Soil	VIIEYNRPAGDCVALREREEQRWTASETVLSLPGSAMVKVELLEGPNNENFRPLLPAM*
Ga0137390_117141302	3300012363	Vadose Zone Soil	VIIKYNLPAGDCVALREREEQRWTASETVLSLPGSAMVKVELLEGPNNENFRPLLPAM*
Ga0137358_104770731	3300012582	Vadose Zone Soil	MKTRVIIEYDLPRGCAAGDRVVIRDQEEQRWTKCKTVLALPGSATVRVELLEIPLMSAM*
Ga0137397_101100484	3300012685	Vadose Zone Soil	MGTKQMKTRVIIEYDLPRGCAAGDRIVVRDQEEQRWITCETVLALPGSATVKVELLEVPLMPAV*
Ga0137395_101473531	3300012917	Vadose Zone Soil	MKTRVIIEYDLPAGDCVALWEREEQRWTASETLLSLPGSAKVRVELLE
Ga0137396_102326792	3300012918	Vadose Zone Soil	MKTRVIIEYDLPRGCAAGDRIVVRDQEEQRWITCETVLALPGSATVKVELLEVPLMPAV*
Ga0137413_103895011	3300012924	Vadose Zone Soil	MKTRVIIEYDLPRGCAAGDRVVVRDQEEQRWITCETVLALPGTATVKVELVDVSLMPAM*
Ga0137419_102868311	3300012925	Vadose Zone Soil	KTRVIIEYDLPAGDHVVVRDREEQRWITSETVLALAGSPTVKVELLERPLMPA*
Ga0137419_103695181	3300012925	Vadose Zone Soil	MKTRVIIEYDLPCVAAGDRIVVRDQEEQRWITCETVLALRGSTTVRVELLDVPLMAAV*
Ga0137416_106271442	3300012927	Vadose Zone Soil	MKTRVIIEYDLPAGDCVALQDREEQRWTASETVLSLPGSATVKVELVELLDGRPLLPAM*
Ga0137416_107934381	3300012927	Vadose Zone Soil	LGEWGRSKMKTRVIIEYNLPAGDCVALREREEQRWTASETVLSLPGSAMVKVELVGLLDERPLLPAM*
Ga0137410_113492042	3300012944	Vadose Zone Soil	MKTRVIIEYNLPSGDRVVVRDQEEQRWTKCETVLALPGSATVTVELLE
Ga0137410_114240882	3300012944	Vadose Zone Soil	MGKQMKTRVIIEYDLPRGCAAGDRVVVRDQEEQRWITCETVLALPGSATVKVELLEVPLMPAV*
Ga0126375_113962731	3300012948	Tropical Forest Soil	MKTRVIIEYDIPRSCAAGDRVVVRDQEEQRWTRSETVLTLPGLATVTVELVDVSLMPTT*
Ga0137418_102667183	3300015241	Vadose Zone Soil	MKTRVIIEYDLPAGDRVVLRDREEQRWTASETVLALPGSAKVKVELLEAPLMPAV*
Ga0137412_100135926	3300015242	Vadose Zone Soil	MKTRVISEYDLPRGCAAGDRVVIRDQEEQRWTKCETVLALPGSATVRVELLEIPLMSAM*
Ga0137412_111493192	3300015242	Vadose Zone Soil	MKTRVVIEYDLPAGDGVALREREEQRWTASETVLSLPGSATVKVELVELLD
Ga0137409_101118401	3300015245	Vadose Zone Soil	MKTRVIIEYDLPRGCAAGDRIVVRDQEEQRWITCETVIALPGSATVKVELLEVPLMPAV*
Ga0187783_100456734	3300017970	Tropical Peatland	MKTRVIIEYDLPPGDPIVVRDREEQRWITCEMVLALPGSATVKVELLEVPLMPAM
Ga0066662_107522203	3300018468	Grasslands Soil	MRTRVIIEYDIPRSFAVGDHIVVRDQEEQRWTKCETVLALPGSATVTVELLEV
Ga0179592_102129581	3300020199	Vadose Zone Soil	MKTRVIIEYDLPRGCAAGDRVVIRDQEEQRWTKCETVLALPGSATVRVELLEIPLMSAM
Ga0210399_109078062	3300020581	Soil	MGEGAMKARVTIEYDLPFEALTVTQLREREEQRWIASPTVLALPGTATVKVELIEEPKA
Ga0210399_111120482	3300020581	Soil	MKTRVIIEYDLPPGDCVVLRDQEEQRWATCETLLALPGSATVKVELVGLSEGRPLLPAM
Ga0210395_106958791	3300020582	Soil	MQGSELVRARTARNGETHMKTRVTVEYNLPAGDRVAVRDQEEQRWITSQTVLALPGSATVKVELLEAPLMPVM
Ga0179596_100087652	3300021086	Vadose Zone Soil	MKTRVIIEYDLPAGDCVALWEREEQRWTASETLLSLPGSAKVRVELLEAPLMPAV
Ga0179596_101192222	3300021086	Vadose Zone Soil	MKTRVIIEYDIPAGDRVVIRDREEQRWTASETVLALPGSAKVKVELLEAPLMPAV
Ga0179596_101658232	3300021086	Vadose Zone Soil	MKTRVIIEYDLPCVAAGDRIVVRDQEEQRWITCETVLALRGSTTVKVELLDVPLMAAV
Ga0179596_102196782	3300021086	Vadose Zone Soil	MKTRVIIEYNLPAGDCVALREREEQRWTASETVLSLPGSAMVKVELLEGPNNENFRPLLPAM
Ga0179585_10285192	3300021307	Vadose Zone Soil	MKTRVIIEYDLPAGDRVVLRDREEQRWTASETVLALPGSAKVKVELLEAPLMPAV
Ga0210389_101344921	3300021404	Soil	MKTRVTVEYNLPAGDRVAVRDQEEQRWITSQTVLALPGSATVKVELLEAPLMPVM
Ga0126371_113082841	3300021560	Tropical Forest Soil	MKTRVIIEYDLPAGDHVVIRDREEQRWIASETVLALPGSPTVKVELLERPLMPAG
Ga0242664_10708341	3300022527	Soil	NGETHMKTRVTVEYNLPAGDRVAVRDQEEQRWITSQTVLALPGSATVKVELLEAPLMPVM
Ga0209240_11578821	3300026304	Grasslands Soil	MKTRVIIEYDVLCVAAGDRIVVRDQEEQRWITCETVLALRGSATVKVELLDVPLMATV
Ga0209131_10182197	3300026320	Grasslands Soil	MKTRVIIEYDLPAGDCVALQDREEQRWTASETVLSLPGSATVKVELLDGRPLLPAM
Ga0209131_12859181	3300026320	Grasslands Soil	MKTRVIIEYNLPAGDCVALREREEQRWTASETVLSLPGSAMVKVELVGLLDERPLLPAM
Ga0257162_10228181	3300026340	Soil	GDCVALREREEQRWTASETVLSLPGSAMVKVELLEGPNNENFRPLLPAM
Ga0257150_10014843	3300026356	Soil	MKTRVVIEYDLPAGDGVALREREEQRWTASETVLSLPGSATVKVELVELLDGRPLLPAM
Ga0257150_10540601	3300026356	Soil	MKTRVIIEYDLPAGDHVVVRDREEQRWITSKTVLALPGSPTVKVELLERPLMPA
Ga0257167_10521661	3300026376	Soil	MGTKRMKTRVIIEYDLPCVAAGDRIVVRDQEEQRWITCETVLALRGSTTVKVELLDVPLMAAV
Ga0257178_10562331	3300026446	Soil	MKTRVIIEYDLPRGCAAGDRVVIRDQEEQRWTKCETVLALPGSATVRVELLEIPS
Ga0257155_10049003	3300026481	Soil	MKTRVIIEYDLPRGCAAGDRVVIRDQEEQRWTKCETVLALPGSATVRVELLEIPSMSAM
Ga0257155_10362513	3300026481	Soil	MKTRVIIEYALPAGDCVALREREEQRWTASETVLSLPGSATVKVELVGLLD
Ga0257155_10565761	3300026481	Soil	VALREREEQRWTASETVLSLPGSAMAKVELLEGPNNENFRPLLPAM
Ga0257160_10333682	3300026489	Soil	MKTRVIIEYDLPRGCAAGDRVVIRDQEEQRWTKCKTVLALPGSATVRVELLEIPSMSAM
Ga0257160_10348372	3300026489	Soil	MKTRVIIEYALPAGDCVALREREEQRWTASETVLSLPGSATVKVELVELLDGRPLLPAM
Ga0257159_10796342	3300026494	Soil	MKTRVIIEYDLPCVAAGDRIVVRDQEEQRWITCETVLALRGSTTVKVE
Ga0257161_10563121	3300026508	Soil	MKTRVVIEYDIPAGDRVVIRDREEQRWTASETVLAPTRLGEGEVELLEAPLMPAV
Ga0257161_11223522	3300026508	Soil	MKTRVIIEYDVLCVAAGDRIVVRDQEEQRWITCETVLALRGSTTVRVELLDVPLMAAV
Ga0179587_104888981	3300026557	Vadose Zone Soil	MGTKQMKTRVIIEYDLPRGCAAGDRIVVRDQEEQRWITCETVLALPGSATVKVELLEVPLMPAV
Ga0179587_110603711	3300026557	Vadose Zone Soil	MKTRVISEYNLPAGDCVALREREEQRWTASETVLSLPGSAMVKVELVGLLDERPLLPAM
Ga0209179_10245092	3300027512	Vadose Zone Soil	TRVIIEYDLPCVAAGDRIVVRDQEEQRWITCETVLALRGSTTVKVELLDVPLMAAV
Ga0209701_104496742	3300027862	Vadose Zone Soil	VALREREEQRWTASETVLSLPGSAMVKVELLEGPNNENFRPLLPAM
Ga0209590_107905902	3300027882	Vadose Zone Soil	MKTRVVIEYDLPAGDGVALREREEQRWTASDTVLSLPGSATVKVELVELLDGRPLLPAM
Ga0209488_102141762	3300027903	Vadose Zone Soil	MKTRVIIEYDLPRSCAAGDRVAVRDQEEQRWTRSETVLALPGSATVKVEVLEVQLMRAAV
Ga0137415_101700001	3300028536	Vadose Zone Soil	MKTRVVIEYNLPAGDRVALREREEQRWTASDTVLTLPGSVTVKVEL
Ga0137415_101921554	3300028536	Vadose Zone Soil	SAPGFWLGEWGRSKMKTRVIIEYNLPAGDCVALREREEQRWTASETVLSLPGSAMVKVELVGLLDERPLLPAM
Ga0306924_105127902	3300032076	Soil	MKTRVIIEYDLPPGDGVVLRDQEEQRWITCETVLALPGSATVKVELVDLLEGRPLLPTM

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069725

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences