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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F069575 |
| Family Type | Metagenome |
| Number of Sequences | 123 |
| Average Sequence Length | 49 residues |
| Representative Sequence | RLWRRHAWIEAVPLVAGQPWLSRVARMARLLLTGHALWRLRARLASRA |
| Number of Associated Samples | 100 |
| Number of Associated Scaffolds | 123 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | No |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 9.76 % |
| % of genes from short scaffolds (< 2000 bps) | 9.76 % |
| Associated GOLD sequencing projects | 95 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.42 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (98.374 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (56.911 % of family members) |
| Environment Ontology (ENVO) | Unclassified (66.667 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Unclassified (56.911 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 57.89% β-sheet: 0.00% Coil/Unstructured: 42.11% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.42 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 123 Family Scaffolds |
|---|---|---|
| PF00221 | Lyase_aromatic | 4.07 |
| PF11303 | DUF3105 | 4.07 |
| PF00005 | ABC_tran | 2.44 |
| PF13424 | TPR_12 | 2.44 |
| PF13676 | TIR_2 | 1.63 |
| PF07366 | SnoaL | 1.63 |
| PF08031 | BBE | 1.63 |
| PF01636 | APH | 1.63 |
| PF13602 | ADH_zinc_N_2 | 1.63 |
| PF02768 | DNA_pol3_beta_3 | 1.63 |
| PF08734 | GYD | 0.81 |
| PF00441 | Acyl-CoA_dh_1 | 0.81 |
| PF01872 | RibD_C | 0.81 |
| PF01715 | IPPT | 0.81 |
| PF01467 | CTP_transf_like | 0.81 |
| PF00589 | Phage_integrase | 0.81 |
| PF08532 | Glyco_hydro_42M | 0.81 |
| PF00903 | Glyoxalase | 0.81 |
| PF02775 | TPP_enzyme_C | 0.81 |
| PF02423 | OCD_Mu_crystall | 0.81 |
| PF04075 | F420H2_quin_red | 0.81 |
| PF01242 | PTPS | 0.81 |
| PF02909 | TetR_C_1 | 0.81 |
| PF00106 | adh_short | 0.81 |
| COG ID | Name | Functional Category | % Frequency in 123 Family Scaffolds |
|---|---|---|---|
| COG2986 | Histidine ammonia-lyase | Amino acid transport and metabolism [E] | 4.07 |
| COG0277 | FAD/FMN-containing lactate dehydrogenase/glycolate oxidase | Energy production and conversion [C] | 1.63 |
| COG0592 | DNA polymerase III sliding clamp (beta) subunit, PCNA homolog | Replication, recombination and repair [L] | 1.63 |
| COG0262 | Dihydrofolate reductase | Coenzyme transport and metabolism [H] | 0.81 |
| COG0324 | tRNA A37 N6-isopentenylltransferase MiaA | Translation, ribosomal structure and biogenesis [J] | 0.81 |
| COG0720 | 6-pyruvoyl-tetrahydropterin synthase | Coenzyme transport and metabolism [H] | 0.81 |
| COG1309 | DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA | Transcription [K] | 0.81 |
| COG1874 | Beta-galactosidase GanA | Carbohydrate transport and metabolism [G] | 0.81 |
| COG1960 | Acyl-CoA dehydrogenase related to the alkylation response protein AidB | Lipid transport and metabolism [I] | 0.81 |
| COG1985 | Pyrimidine reductase, riboflavin biosynthesis | Coenzyme transport and metabolism [H] | 0.81 |
| COG2423 | Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family | Amino acid transport and metabolism [E] | 0.81 |
| COG4274 | Uncharacterized conserved protein, contains GYD domain | Function unknown [S] | 0.81 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 98.37 % |
| All Organisms | root | All Organisms | 1.63 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300017959|Ga0187779_10434736 | Not Available | 860 | Open in IMG/M |
| 3300027824|Ga0209040_10231836 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium | 937 | Open in IMG/M |
| 3300031545|Ga0318541_10357121 | Not Available | 816 | Open in IMG/M |
| 3300031546|Ga0318538_10504009 | Not Available | 656 | Open in IMG/M |
| 3300031681|Ga0318572_10458577 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 759 | Open in IMG/M |
| 3300031764|Ga0318535_10215326 | Not Available | 859 | Open in IMG/M |
| 3300031768|Ga0318509_10206290 | Not Available | 1094 | Open in IMG/M |
| 3300031771|Ga0318546_10320789 | Not Available | 1075 | Open in IMG/M |
| 3300031805|Ga0318497_10291288 | Not Available | 909 | Open in IMG/M |
| 3300032008|Ga0318562_10583873 | Not Available | 646 | Open in IMG/M |
| 3300032008|Ga0318562_10758354 | Not Available | 556 | Open in IMG/M |
| 3300032066|Ga0318514_10210335 | Not Available | 1020 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 56.91% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 13.01% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 4.88% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 4.88% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 3.25% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 3.25% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 2.44% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 2.44% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 2.44% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 1.63% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 1.63% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 0.81% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 0.81% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 0.81% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil | 0.81% |
| Visualization |
|---|
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Environmental | Open in IMG/M |
| 3300009698 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG | Environmental | Open in IMG/M |
| 3300010048 | Tropical forest soil microbial communities from Panama - MetaG Plot_11 | Environmental | Open in IMG/M |
| 3300010361 | Tropical forest soil microbial communities from Panama - MetaG Plot_23 | Environmental | Open in IMG/M |
| 3300010379 | Sb_50d combined assembly | Environmental | Open in IMG/M |
| 3300012200 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG | Environmental | Open in IMG/M |
| 3300012361 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG | Environmental | Open in IMG/M |
| 3300012362 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG | Environmental | Open in IMG/M |
| 3300016270 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 | Environmental | Open in IMG/M |
| 3300016319 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H | Environmental | Open in IMG/M |
| 3300016341 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 | Environmental | Open in IMG/M |
| 3300016357 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 | Environmental | Open in IMG/M |
| 3300016387 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 | Environmental | Open in IMG/M |
| 3300016404 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 | Environmental | Open in IMG/M |
| 3300017822 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2 | Environmental | Open in IMG/M |
| 3300017926 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2 | Environmental | Open in IMG/M |
| 3300017932 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4 | Environmental | Open in IMG/M |
| 3300017942 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3 | Environmental | Open in IMG/M |
| 3300017959 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG | Environmental | Open in IMG/M |
| 3300017966 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG | Environmental | Open in IMG/M |
| 3300017974 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG | Environmental | Open in IMG/M |
| 3300018086 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG | Environmental | Open in IMG/M |
| 3300021170 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M | Environmental | Open in IMG/M |
| 3300021178 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M | Environmental | Open in IMG/M |
| 3300021407 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O | Environmental | Open in IMG/M |
| 3300024331 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09 | Environmental | Open in IMG/M |
| 3300025898 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027168 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF037 (SPAdes) | Environmental | Open in IMG/M |
| 3300027680 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes) | Environmental | Open in IMG/M |
| 3300027795 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027824 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027905 | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes) | Environmental | Open in IMG/M |
| 3300028906 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2) | Environmental | Open in IMG/M |
| 3300030494 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2) | Environmental | Open in IMG/M |
| 3300031474 | Fir Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031543 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20 | Environmental | Open in IMG/M |
| 3300031544 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26 | Environmental | Open in IMG/M |
| 3300031545 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26 | Environmental | Open in IMG/M |
| 3300031546 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23 | Environmental | Open in IMG/M |
| 3300031679 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23 | Environmental | Open in IMG/M |
| 3300031680 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22 | Environmental | Open in IMG/M |
| 3300031681 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20 | Environmental | Open in IMG/M |
| 3300031682 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22 | Environmental | Open in IMG/M |
| 3300031723 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23 | Environmental | Open in IMG/M |
| 3300031724 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20 | Environmental | Open in IMG/M |
| 3300031736 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21 | Environmental | Open in IMG/M |
| 3300031744 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2) | Environmental | Open in IMG/M |
| 3300031747 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22 | Environmental | Open in IMG/M |
| 3300031751 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24 | Environmental | Open in IMG/M |
| 3300031764 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27 | Environmental | Open in IMG/M |
| 3300031765 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22 | Environmental | Open in IMG/M |
| 3300031768 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22 | Environmental | Open in IMG/M |
| 3300031769 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24 | Environmental | Open in IMG/M |
| 3300031771 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19 | Environmental | Open in IMG/M |
| 3300031777 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24 | Environmental | Open in IMG/M |
| 3300031781 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20 | Environmental | Open in IMG/M |
| 3300031793 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21 | Environmental | Open in IMG/M |
| 3300031805 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23 | Environmental | Open in IMG/M |
| 3300031819 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21 | Environmental | Open in IMG/M |
| 3300031821 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20 | Environmental | Open in IMG/M |
| 3300031831 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20 | Environmental | Open in IMG/M |
| 3300031833 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178 | Environmental | Open in IMG/M |
| 3300031835 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21 | Environmental | Open in IMG/M |
| 3300031845 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18 | Environmental | Open in IMG/M |
| 3300031860 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25 | Environmental | Open in IMG/M |
| 3300031879 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2) | Environmental | Open in IMG/M |
| 3300031890 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2) | Environmental | Open in IMG/M |
| 3300031893 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28 | Environmental | Open in IMG/M |
| 3300031896 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19 | Environmental | Open in IMG/M |
| 3300031897 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16 | Environmental | Open in IMG/M |
| 3300031912 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2) | Environmental | Open in IMG/M |
| 3300031941 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080 | Environmental | Open in IMG/M |
| 3300031942 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176 | Environmental | Open in IMG/M |
| 3300031947 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H | Environmental | Open in IMG/M |
| 3300031954 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2) | Environmental | Open in IMG/M |
| 3300031959 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24 | Environmental | Open in IMG/M |
| 3300032008 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18 | Environmental | Open in IMG/M |
| 3300032009 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19 | Environmental | Open in IMG/M |
| 3300032010 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22 | Environmental | Open in IMG/M |
| 3300032035 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170 | Environmental | Open in IMG/M |
| 3300032043 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24 | Environmental | Open in IMG/M |
| 3300032054 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23 | Environmental | Open in IMG/M |
| 3300032055 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23 | Environmental | Open in IMG/M |
| 3300032059 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27 | Environmental | Open in IMG/M |
| 3300032064 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17 | Environmental | Open in IMG/M |
| 3300032066 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18 | Environmental | Open in IMG/M |
| 3300032067 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22 | Environmental | Open in IMG/M |
| 3300032076 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2) | Environmental | Open in IMG/M |
| 3300032089 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23 | Environmental | Open in IMG/M |
| 3300032094 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25 | Environmental | Open in IMG/M |
| 3300032160 | Sb_50d combined assembly (MetaSPAdes) | Environmental | Open in IMG/M |
| 3300032770 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5 | Environmental | Open in IMG/M |
| 3300032895 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3 | Environmental | Open in IMG/M |
| 3300032955 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5 | Environmental | Open in IMG/M |
| 3300033289 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| Ga0066388_1085346131 | 3300005332 | Tropical Forest Soil | VGALVWLARRLWRRHAWIEAVPLVAGQPWLSRAARMARLSLTGRALWQLRTRLTSRA* |
| Ga0066903_1056420552 | 3300005764 | Tropical Forest Soil | GVAAVGALVWLAWRLWRRHAWIEAVPPLAGQPWLSLVARIARVLFTGRALWRLRTRLASHA* |
| Ga0070717_106444942 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | LTGQPWLSLVARMARLLLTGRALWRLRTRLAYRA* |
| Ga0116216_103649381 | 3300009698 | Peatlands Soil | LVWLARRLWRRHAWVEAVPLVAGQPWLSQVARMARLLLTGHALWQLRTRLASRA* |
| Ga0126373_108863031 | 3300010048 | Tropical Forest Soil | WIEAVPPLAGQPWLSLVARIARMLFTGRALWRLRTRLASRA* |
| Ga0126378_105925821 | 3300010361 | Tropical Forest Soil | HAWIEAVPPLAGQPWLSLVARIARLLFTGRALWRLRTRLASRA* |
| Ga0136449_1023067322 | 3300010379 | Peatlands Soil | VAAVGALVWLARWLWRRHAWVEAVPLVAGQPWLSQVARMARLLLTGHALWQLRTRLASRA |
| Ga0137382_110393861 | 3300012200 | Vadose Zone Soil | WIEAAPLVAGQPWLSQVARMARLLLTGHVLWRLRTRLASRT* |
| Ga0137360_110928031 | 3300012361 | Vadose Zone Soil | VPLVAGQPWLSRVARMARLLFTSHALWRLRTRLASRT* |
| Ga0137361_106281751 | 3300012362 | Vadose Zone Soil | LVWLAGRLWRRHAWIEAVPLVAGQPWLSRVARMARLLFTSHALWRLRTRLASRT* |
| Ga0182036_106665872 | 3300016270 | Soil | WLAQRLWRRHAWIEAVPLMAGQPWLSRAARMARLSLTGRALWQLRTRLASRA |
| Ga0182033_101753852 | 3300016319 | Soil | WRRHAWIEAVPPVAGQPWLSLVARIARVVFTSRALWRLRTRLASRA |
| Ga0182033_104007173 | 3300016319 | Soil | AVAPAAGQPWLSLVARIARVLFTGRALWRLRTRLASRA |
| Ga0182035_112082281 | 3300016341 | Soil | AWIEAVPPLAGQPWLSLVARMARLLFTGRALWRLRTRLASRA |
| Ga0182032_112035552 | 3300016357 | Soil | LVVGLPWLSRVARMARLLFTGRALWQLRTRLASRP |
| Ga0182040_115421542 | 3300016387 | Soil | WLARRLWRRHAWIEAAPLVAGQPWLSRAARMARLSLTGRALWQLRSRLASRA |
| Ga0182037_114313352 | 3300016404 | Soil | EAVPLVAGQPWLSRVARMARVLLTGHAFWQLRTRLASRA |
| Ga0187802_101375191 | 3300017822 | Freshwater Sediment | VGALVWLARRLWQRHAWIEAAPLVVRQPWLSRVARMARLLLTGHALWQLRTRLASRA |
| Ga0187807_13325742 | 3300017926 | Freshwater Sediment | VGALVWLARRLWRRHAWIEAVPLVAGLPWLSRVARIARLLLAGHAFWQLRTRQASRA |
| Ga0187814_101443522 | 3300017932 | Freshwater Sediment | MSCDPLSRSALAWLARRLWRRHAWIEAVPLVAGQPWLSRVARMARLLLTGHALWRLRARLASRA |
| Ga0187808_100478805 | 3300017942 | Freshwater Sediment | IEAVPLVTGQPWLSRVARRARLLFTGNALWRLRNRLASRA |
| Ga0187779_104347362 | 3300017959 | Tropical Peatland | WLRHAWIEAVPLVAGQPWLSQVARMARLLLAGRALWQLRTRLASRP |
| Ga0187776_101588203 | 3300017966 | Tropical Peatland | RLWRRHAWIEAVPLVAGQPWLSRVARMARLLLTGHALWRLRARLASRA |
| Ga0187776_102146222 | 3300017966 | Tropical Peatland | RLWRRHAWIEAVPLVAGQPWLSRVARMARLLLTGHALWRLRVRLASRA |
| Ga0187777_101131582 | 3300017974 | Tropical Peatland | GALVWLARRLWRRHAWIEAVPLVAGQPWLSRVARMARLLLTGHALWRLRVRLASRA |
| Ga0187769_104401123 | 3300018086 | Tropical Peatland | IEAVPLVAGLPWLSRVARIARLLLTGHAFWQLRTRLAPRA |
| Ga0187769_111765271 | 3300018086 | Tropical Peatland | LARRLWRRHAWIEAAPLVTGQPWLSGVARMARLLLTGHALWRLRTRLASRA |
| Ga0210400_105149571 | 3300021170 | Soil | WLARRLWWRHAWIEAVPLVAGQPWLSWVARMARLLFTGRALWQLRTRLASRA |
| Ga0210408_113571581 | 3300021178 | Soil | ILVVGVVAVGALVWLARRLWRRHAWIEAAPSVAGQPWLSLVARMARLLFTGRALWRLRTRLASRA |
| Ga0210383_113353381 | 3300021407 | Soil | VWLAQRLWRRHAWIEAVPPLTGQPWLSLVARMARLLLTGRALWRLRTRLAYRA |
| Ga0247668_10669842 | 3300024331 | Soil | GALVWLAQRLWRRHAWIEAVPPLTGQPWLSLVARMARLLLTGRALWRLRTRLAYRA |
| Ga0207692_104444061 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | AVPPLTGQPWLSLVARMARLLLTGRALWRLRTRLAYRA |
| Ga0207646_100994865 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | EAVPPIAGQPWLSLVARMARLLFTGRALWRLRTRLATRA |
| Ga0207700_106018892 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | VPPLTGQPWLSLVARMARLLLTGRALWRLRTRLAYRA |
| Ga0207664_106999732 | 3300025929 | Agricultural Soil | HAWIEAVPSVAGQPWLSLVARMARLLLTGRALWRLRSRLAYRA |
| Ga0208239_10094721 | 3300027168 | Forest Soil | VPLVAGQPWLSWVARMARLLFTGRALWQLRTRLASRA |
| Ga0207826_11702591 | 3300027680 | Tropical Forest Soil | LRHAWVEAVPLVTGQPWLSWVARMARLLLTGHALWRLRTRLASRA |
| Ga0209139_102047332 | 3300027795 | Bog Forest Soil | VAVAVAAVGALVWLARRLWRRHAWIEAVPLVAGQPWLSWVARMARLLFTGRALWQLRTRLASRA |
| Ga0209040_102318363 | 3300027824 | Bog Forest Soil | AWIEAVPLVAGQPWLSWVARIARLLFTGRALWQLRTRLASRA |
| Ga0209415_105679942 | 3300027905 | Peatlands Soil | WIEAVPLLAGQPWLSRVARMARLLLTGHALWRLRSRLASRA |
| Ga0209415_108408912 | 3300027905 | Peatlands Soil | WIEAVPLLAGQPWLSRVARMARLLLTGHALWRLRTRLASRA |
| Ga0308309_110503592 | 3300028906 | Soil | WLARRLWRRHAWIEAVPLVAGQPWLSWVARIARLLFTGRALWRLRTRLASRA |
| Ga0310037_104717791 | 3300030494 | Peatlands Soil | LWRRHAWVEAVPLVAGQPWLSQVARMARLLLTGHALWQLRTRLASRA |
| Ga0170818_1131207441 | 3300031474 | Forest Soil | VPSVAGQPWLSLVARMARLLLAGRALWRLRARLAYRA |
| Ga0318516_102201471 | 3300031543 | Soil | VDGRRLWQRHAWIEAVPLVAGQPWLSRVARMARLLLTGHALRRLRARLTSRA |
| Ga0318516_104216341 | 3300031543 | Soil | ALVWLARRLWRRHAWIEAAPLVVGQPWLSQVARMARLLLTGRALWRLRTRLASRA |
| Ga0318534_105042721 | 3300031544 | Soil | AVGALVWLAQRLWRRHAWIEAVPLMAGQPWLSRAARMARLSLTGRALWQLRTRLASRA |
| Ga0318534_105222451 | 3300031544 | Soil | GALVWLARRLWLRHAWIEAVPLLAGQPWLSRVARVVRLLVTSRALWQLRTRLASRA |
| Ga0318541_103571211 | 3300031545 | Soil | LRHAWIEAVPLVAGQPWLSQVARMARLLLAGRALWQLRTRPASRP |
| Ga0318538_102473851 | 3300031546 | Soil | LSHAWIEAVPLVAGQPWLSRAVRMARLSLASRALWQLRTRLASRA |
| Ga0318538_105040092 | 3300031546 | Soil | PRGDRHALGVAVVGAVVWLARRLWRRHAWIEAVPLVTGQPWLSQIARMARLLLTGHALWRWRTRLASRA |
| Ga0318561_101379922 | 3300031679 | Soil | RHAWIEAVPLVAGQPWLSWVARVARLLFTGRALWQLRTRLASRA |
| Ga0318561_101428763 | 3300031679 | Soil | TILAVGVTAAGGLVWLAWRLWRRHAWIEAVPPVVGQPWLSLVARMARLLFTGRALWRLRTRLASRA |
| Ga0318574_103024251 | 3300031680 | Soil | VWLARRLWRRHAWIEAMPLVTGQPWLSQVARMARLLLTGHALWRWRTRLASRA |
| Ga0318574_103959711 | 3300031680 | Soil | VWLVLRLWRRHAWIEAVPPVAGQPWLSLVVRIARVLFTGRALWRLHTRLASRA |
| Ga0318572_101261881 | 3300031681 | Soil | ILAAGVAAVGALVWLARRLWRRHAWIEAAPLVAGQPWLSRLARMARLLLTGHALWRVRARLASRA |
| Ga0318572_103439083 | 3300031681 | Soil | GALVWLARRLWRRHAWIEAVPLVVGQPWLSRVARLARLLLTGHAFWQLRTRLASRA |
| Ga0318572_104585771 | 3300031681 | Soil | VGALAWLARRLWRRHAWIEAALLVAGQPWLSRVARMARLLLTGHALWQLRTRLASRA |
| Ga0318560_105464451 | 3300031682 | Soil | RRHAWIEAVPPLAGQPWLSLVARIARMLFTGRALWRLRTRLAPRA |
| Ga0318493_100300371 | 3300031723 | Soil | VATVGALVWLAGRLWRRHAWIEAVPLVAGQPWLSRVARMARLLLTGNALWRLRTRLASRA |
| Ga0318500_103763162 | 3300031724 | Soil | VGALVWLARRLWRRHAWIEAVPLVVGQPWLSRVARLARLLLTGHAFWQLRTRLASRA |
| Ga0318501_102043132 | 3300031736 | Soil | MVALVWLARRLWRRHAWIEAVPLVAGQPWLSRAVRMARLSLASRALWQLRTRLASRA |
| Ga0306918_101655441 | 3300031744 | Soil | AAGVAAVGALAWLAWRLWRRHAWIEAVPLVTGQPWLSWVARVARLLFTGRALWQLRTRLASRA |
| Ga0318502_100947551 | 3300031747 | Soil | HAWIEAVPLVAGQPWLSRVARMARVLLTGHAFWQLRTRLASRA |
| Ga0318494_103051521 | 3300031751 | Soil | WIEAVAPAAGQPWLSLVARIARVLFTGRALWRLRTRLASHA |
| Ga0318494_107397462 | 3300031751 | Soil | RHAWIEAVPPVAGQPWLSLVARIARVVLTSRALWRLRTRLAARA |
| Ga0318535_102153262 | 3300031764 | Soil | GVAAVGAVLWLARRLWLRHAWIEAVPLVAGQPWLSQVARMARLLLAGRALWQLRTRLASR |
| Ga0318554_101167421 | 3300031765 | Soil | ALVWLARRLWRRHAWIEAVPLVAGQPWLSRAVRMARLSLASRALWQLRTRLASRA |
| Ga0318509_102062901 | 3300031768 | Soil | LWLARRLWLRHAWIEAVPLVAGQPWLSQVARMARLLLAGRALWQLRTRLASRP |
| Ga0318526_102844452 | 3300031769 | Soil | ATVGALVWLAGRLWRRHAWIEAVPLVAGQPWLSRVARMARLLLTGNALWRLRTRLASRA |
| Ga0318546_103207892 | 3300031771 | Soil | VPLVVGQPWLSQVARMARLLLTGHALWQLRTRLASRP |
| Ga0318543_102651451 | 3300031777 | Soil | VAAMGALVWLAWRLWRRHAWIEAVPPLAGQPWLSLVARIARILFTGRTLWRLRTRLASRA |
| Ga0318547_101589003 | 3300031781 | Soil | AVGALVWLARRLWRRHAWIEAVPLVVGQPWLSRVARLARLLLTGHAFWQLRTRLASRA |
| Ga0318548_100163634 | 3300031793 | Soil | VWLARRLWRRHAWIEAVPLVAGQPWLSRVARMARVLLTGHAFWQLRTRLASRA |
| Ga0318548_104068612 | 3300031793 | Soil | VWLARRLWRRHAWIEAVPLVAGQPWLSRAARMARLSLTGRALWQLRTRLASRA |
| Ga0318497_102209722 | 3300031805 | Soil | VPLVAGQPWLSRAVRMARLSLASRALWQLRTRLASRA |
| Ga0318497_102912881 | 3300031805 | Soil | AVGAVLWLARRLWLRHAWIEAVPLVAGQPWLSQVARMARLLLAGRALWQLRTRLASRP |
| Ga0318497_105067921 | 3300031805 | Soil | VGGLVWLARRLWLRHAWIEAVPLVVGQPWLSQVARMARLLLTGHALWQLRTRLASRP |
| Ga0318568_108576592 | 3300031819 | Soil | VPPVAGQPWLSLVVRIARVLFTGRALWRLHTRLASRA |
| Ga0318567_105704951 | 3300031821 | Soil | VPLVAGQPWLSQVARMARLLLAGRALWQLRTRLASRP |
| Ga0318564_103156912 | 3300031831 | Soil | WLRHAWIEAVPLVTGQPWLSQVARMARLLLAGRALWQLRTRLASRP |
| Ga0318564_103399231 | 3300031831 | Soil | AVPLVAGQPWLSRVARMARLLLTGNALWRLRTRLASRA |
| Ga0318564_103790692 | 3300031831 | Soil | LSHAWIEAVPPVAGQPWLSLVVRIARVLFTGRALWRLRTRLASRA |
| Ga0310917_108052292 | 3300031833 | Soil | AGVATVGALAWLAWRLWRRHAWIEAVPLVAGQPWLSWVARVARLLFTGRALWQLRTRLASRA |
| Ga0318517_103104691 | 3300031835 | Soil | VGALVWLAQRLWRRHAWIEAVPLMAGQPWLSRAARMARLSLTGRALWQLRTRLASRA |
| Ga0318511_104340721 | 3300031845 | Soil | VAAVGALAWLAVRLWRRHAWIEAVPPVAGQPWLSLVARIARVLFTGRALWRLRTRLASHA |
| Ga0318495_100736082 | 3300031860 | Soil | ILAAGVAAVGALVWLARRLWRRHAWIEAAPLVAGQPWLSRLARMARLLLTGHALWRLRARLASRA |
| Ga0306919_112346841 | 3300031879 | Soil | AVPPLAGQPWLSLVARIARMLFTGRALWRLRTRLAPRA |
| Ga0306925_112312141 | 3300031890 | Soil | LAQRLWRRHAWIEAVPLMAGQPWLSRAARMARLSLTGRALWQLRTRLASRA |
| Ga0306925_119851741 | 3300031890 | Soil | LVAGQPWLGRVARMARLLLTGHALWRLRTRLASRA |
| Ga0318536_101696512 | 3300031893 | Soil | AILAAGVAAVGALAWLAVRLWRRHAWIEAVPPVAGQPWLSLVARIARVVLTSRALWRLRTRLAARA |
| Ga0318551_102122201 | 3300031896 | Soil | AWIEAVPLVAGQPWLSRVARMARLLLTGHALRRLRARLTSRA |
| Ga0318551_107799901 | 3300031896 | Soil | WRRHAWIEAVPPVVGQPWLSLVARMARLLFTGRALWRLRTRLASRA |
| Ga0318520_103166313 | 3300031897 | Soil | VWLARRLWRRHAWIEAVPLVVGQPWLSRVARLARLLLTGHAFWQLRTRLASRA |
| Ga0306921_112563861 | 3300031912 | Soil | GRLWRRHAWIEAVPLVAGQPWLSRVARMARLLLTGHALWRLRTRVASRA |
| Ga0306921_114893072 | 3300031912 | Soil | AAGALIWLARRLWRRHAWIEAVPPIAGQPWLSLIARMARLLFTGRALWRLRTRMASRA |
| Ga0310912_112682972 | 3300031941 | Soil | AWLAWRLWRRHAWIEAVPLVTGQPWLSWVARVARLLFTGRALWQLRTRLASRA |
| Ga0310916_116898672 | 3300031942 | Soil | RHAWIEAVPLVAGQPWLSQVARMARLLLAGRALWQLRTRLASRP |
| Ga0310909_107741142 | 3300031947 | Soil | AAGGLVWLAWRLWRRHAWIEAVPPVVGQPWLSLVARMARLLFTGRALWRLRTRLASRA |
| Ga0306926_109493911 | 3300031954 | Soil | LVWLARRLWRRHAWIEAVPTVAGQPWLSLAARLARLLFTGRALWRLRTRLASRA |
| Ga0306926_129454611 | 3300031954 | Soil | IEAVPPVAGQPWLSLVVRIARVLFTGRALWRLRTRLASRA |
| Ga0318530_103129511 | 3300031959 | Soil | RLWRRHAWIEAVPLVAGQPWLSRVARMARVLLTGHAFWQLRTRLASRA |
| Ga0318562_105838731 | 3300032008 | Soil | AWIEAVPLVVGQPWLSRVVRMARLLLTGHALWQLRTRLASRA |
| Ga0318562_107583542 | 3300032008 | Soil | AWIEAMPLVTGQPWLSQVARMARLLLTGHALWRWRTRLASRA |
| Ga0318563_105233251 | 3300032009 | Soil | EAVPPVVGQPWLSLVARMARLLFTGRALWRLRTRLASRA |
| Ga0318569_102587181 | 3300032010 | Soil | VGALVWLARRLWRRHAWIEAVPLVAGQPWLSRVARMARVLLTGHAFWQLRTRLASRA |
| Ga0310911_105508741 | 3300032035 | Soil | VAAVGSLAWLAWRLWRRHAWIEAVPPVAGQPWLSLVARIARVVFTSRALWRLRTRLASRA |
| Ga0318556_106804631 | 3300032043 | Soil | AGVAAVGALVWLVLRLWRRHAWIEAVPPVAGQPWLSLVVRIARVLFTGRALWRLHTRLASRA |
| Ga0318570_102686311 | 3300032054 | Soil | RHAWIEAVPLVVGQPWLSRVARLARLLLTGHAFWQLRTRLASRA |
| Ga0318575_104332562 | 3300032055 | Soil | ALVWLARRLWRRHAWIEAVPLVVGQPWLSRVARLARLLLAGHAFWQLRTRLASRA |
| Ga0318533_104657291 | 3300032059 | Soil | RQGPHGSYAWIEAVPLVTGQPWLSWVARVARLLFTGRALWQLRTRLASRA |
| Ga0318510_104289311 | 3300032064 | Soil | WLVWGLWRRHAWIEALPPLTGQPWLTLVARLARLVLTGRALWRLRTRLASRA |
| Ga0318514_102103352 | 3300032066 | Soil | VSAVGAVLWLARRLWLRHAWIEAVPLVAGQPWLSQVARMARLLLAGRALWQLRTRLASRP |
| Ga0318514_103378561 | 3300032066 | Soil | AWIEAVPLVAGQPWLSRVARMARVLLTGHAFWQLRTRLASRA |
| Ga0318524_101564951 | 3300032067 | Soil | RHAWIEAVPLVAGQPWLSRVARMARLLLTGHALRRLRARLTSRA |
| Ga0306924_122824761 | 3300032076 | Soil | ALVWLARRLWRRHAWIEAVPTVAGQPWLSLAARLARLLFTGRALWRLRTRLASRA |
| Ga0318525_100197262 | 3300032089 | Soil | WIEAAPLVAGQPWLSRLARMARLLLTGHALWRVRARLASRA |
| Ga0318540_100375203 | 3300032094 | Soil | AWIEAVPLLAGQPWLSRVARVVRLLVTSRALWQLRTRLASRA |
| Ga0311301_115614561 | 3300032160 | Peatlands Soil | LVWLARRLWRRHAWVEAVPLVAGQPWLSQVARMARLLLTGHALWQLRTRLASRA |
| Ga0335085_108519101 | 3300032770 | Soil | ILAVGMAAVGAVVWLARRLWRRHAWIEAAPLVAGQPWLTQVARMARLLLTGRALWRLRTRLASRA |
| Ga0335074_115656792 | 3300032895 | Soil | GLVWLARRMWLRHAWIEAVPLAAGQPWLGRVARMARWVLTGRALWRLRTKLASRG |
| Ga0335076_107986972 | 3300032955 | Soil | VPLATGQPWLGRVARMARWLLTGRALWRLRTRFASRG |
| Ga0310914_108402721 | 3300033289 | Soil | LWRRHAWIEAVPLVAGQPWLSRAVRMARLSLASRALWQLRTRLASRA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |