Metagenome / Metatranscriptome Family F069455

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069455
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	96 residues
Representative Sequence	VRPDQAPLVRIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLAEDGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKERLLLRLPD
Number of Associated Samples	106
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	20.97 %
% of genes near scaffold ends (potentially truncated)	66.94 %
% of genes from short scaffolds (< 2000 bps)	86.29 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.85

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.581 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (21.774 % of family members)
Environment Ontology (ENVO)	Unclassified (29.032 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.839 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.40% β-sheet: 33.06% Coil/Unstructured: 54.55%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.85
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.85
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SCOP family	SCOP domain	Representative PDB	TM-score
b.40.4.0: automated matches	d6wnza_	6wnz	0.7566
b.40.4.11: DNA replication initiator (cdc21/cdc54) N-terminal domain	d1ltla_	1ltl	0.75423
b.40.4.11: DNA replication initiator (cdc21/cdc54) N-terminal domain	d3ja821	3ja8	0.74202
b.40.4.0: automated matches	d4pofa1	4pof	0.73914
b.40.4.11: DNA replication initiator (cdc21/cdc54) N-terminal domain	d3ja871	3ja8	0.72877

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF03167	UDG	18.55
PF01435	Peptidase_M48	14.52
PF13519	VWA_2	9.68
PF04893	Yip1	1.61
PF00474	SSF	0.81
PF14343	PrcB_C	0.81
PF02897	Peptidase_S9_N	0.81
PF02754	CCG	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	18.55
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	18.55
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	18.55
COG0247	Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF	Energy production and conversion [C]	0.81
COG1505	Prolyl endopeptidase PreP, S9A serine peptidase family	Amino acid transport and metabolism [E]	0.81
COG1770	Protease II	Amino acid transport and metabolism [E]	0.81
COG2048	Heterodisulfide reductase, subunit B	Energy production and conversion [C]	0.81

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.58 %
Unclassified	root	N/A	2.42 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.58 %
Unclassified	root	N/A	2.42 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.58 %
Unclassified	root	N/A	2.42 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	61.29 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.42 %
Unclassified	root	N/A	2.42 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	61.29 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.42 %
Unclassified	root	N/A	2.42 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	61.29 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.42 %
Unclassified	root	N/A	2.42 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	61.29 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.42 %
Unclassified	root	N/A	2.42 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	59.68 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.42 %
Unclassified	root	N/A	2.42 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.81 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	59.68 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.42 %
Unclassified	root	N/A	2.42 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	0.81 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	59.68 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.42 %
Unclassified	root	N/A	2.42 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	0.81 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0810794	All Organisms → cellular organisms → Bacteria	1462	Open in IMG/M
3300000891\|JGI10214J12806_10779967	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1814	Open in IMG/M
3300000956\|JGI10216J12902_105775661	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1087	Open in IMG/M
3300001305\|C688J14111_10006859	All Organisms → cellular organisms → Bacteria	3170	Open in IMG/M
3300001431\|F14TB_107428504	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	505	Open in IMG/M
3300001686\|C688J18823_10308519	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1037	Open in IMG/M
3300002568\|C688J35102_120279724	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	965	Open in IMG/M
3300003267\|soilL1_10002025	All Organisms → cellular organisms → Bacteria	4394	Open in IMG/M
3300003993\|Ga0055468_10062517	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300004153\|Ga0063455_100189973	Not Available	1002	Open in IMG/M
3300004153\|Ga0063455_100965294	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	612	Open in IMG/M
3300004463\|Ga0063356_102855108	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	744	Open in IMG/M
3300004800\|Ga0058861_11786093	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	681	Open in IMG/M
3300004803\|Ga0058862_12763486	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1105	Open in IMG/M
3300005334\|Ga0068869_101281132	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	646	Open in IMG/M
3300005341\|Ga0070691_10927653	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	539	Open in IMG/M
3300005343\|Ga0070687_100819757	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	661	Open in IMG/M
3300005356\|Ga0070674_100547914	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	970	Open in IMG/M
3300005366\|Ga0070659_100242902	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1491	Open in IMG/M
3300005366\|Ga0070659_100384487	All Organisms → cellular organisms → Bacteria	1182	Open in IMG/M
3300005444\|Ga0070694_101153099	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	648	Open in IMG/M
3300005458\|Ga0070681_10619534	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	997	Open in IMG/M
3300005459\|Ga0068867_100932119	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	783	Open in IMG/M
3300005873\|Ga0075287_1016948	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300005886\|Ga0075286_1017528	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	885	Open in IMG/M
3300006755\|Ga0079222_10063285	All Organisms → cellular organisms → Bacteria	1783	Open in IMG/M
3300006845\|Ga0075421_100000954	All Organisms → cellular organisms → Bacteria	32497	Open in IMG/M
3300006881\|Ga0068865_101318770	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	642	Open in IMG/M
3300006918\|Ga0079216_10175140	All Organisms → cellular organisms → Bacteria	1148	Open in IMG/M
3300006954\|Ga0079219_10026648	All Organisms → cellular organisms → Bacteria	2227	Open in IMG/M
3300007004\|Ga0079218_10934352	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	858	Open in IMG/M
3300009098\|Ga0105245_10266343	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1669	Open in IMG/M
3300009156\|Ga0111538_10447398	All Organisms → cellular organisms → Bacteria	1637	Open in IMG/M
3300009176\|Ga0105242_11211995	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	774	Open in IMG/M
3300009789\|Ga0126307_10093239	All Organisms → cellular organisms → Bacteria → Proteobacteria	2382	Open in IMG/M
3300009789\|Ga0126307_10327770	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1233	Open in IMG/M
3300009789\|Ga0126307_10858490	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	733	Open in IMG/M
3300009789\|Ga0126307_11007971	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	673	Open in IMG/M
3300010037\|Ga0126304_10136477	All Organisms → cellular organisms → Bacteria	1577	Open in IMG/M
3300010037\|Ga0126304_10279263	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300010039\|Ga0126309_10070883	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1724	Open in IMG/M
3300010039\|Ga0126309_10410107	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	813	Open in IMG/M
3300010039\|Ga0126309_10983197	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	565	Open in IMG/M
3300010040\|Ga0126308_10038146	All Organisms → cellular organisms → Bacteria	2727	Open in IMG/M
3300010040\|Ga0126308_11099040	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	560	Open in IMG/M
3300010041\|Ga0126312_10313423	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1108	Open in IMG/M
3300010041\|Ga0126312_10541781	Not Available	834	Open in IMG/M
3300010042\|Ga0126314_10020482	All Organisms → cellular organisms → Bacteria	4000	Open in IMG/M
3300010045\|Ga0126311_10242173	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1335	Open in IMG/M
3300010045\|Ga0126311_11896310	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	506	Open in IMG/M
3300010145\|Ga0126321_1296751	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	827	Open in IMG/M
3300010373\|Ga0134128_10208888	All Organisms → cellular organisms → Bacteria	2196	Open in IMG/M
3300010396\|Ga0134126_11594456	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	718	Open in IMG/M
3300010399\|Ga0134127_10346128	All Organisms → cellular organisms → Bacteria	1450	Open in IMG/M
3300010400\|Ga0134122_10067246	All Organisms → cellular organisms → Bacteria	2778	Open in IMG/M
3300010403\|Ga0134123_13368804	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	516	Open in IMG/M
3300011003\|Ga0138514_100072488	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300011332\|Ga0126317_10036678	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1929	Open in IMG/M
3300011332\|Ga0126317_10180429	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	787	Open in IMG/M
3300012043\|Ga0136631_10004095	All Organisms → cellular organisms → Bacteria	4921	Open in IMG/M
3300012187\|Ga0136622_10099205	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1237	Open in IMG/M
3300012212\|Ga0150985_111872454	All Organisms → cellular organisms → Bacteria → Proteobacteria	1997	Open in IMG/M
3300012212\|Ga0150985_116868295	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2171	Open in IMG/M
3300012469\|Ga0150984_103186362	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	566	Open in IMG/M
3300012469\|Ga0150984_103696041	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	591	Open in IMG/M
3300012530\|Ga0136635_10010040	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	2868	Open in IMG/M
3300012678\|Ga0136615_10527960	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	506	Open in IMG/M
3300012681\|Ga0136613_10161961	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1273	Open in IMG/M
3300012892\|Ga0157294_10298381	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	514	Open in IMG/M
3300012897\|Ga0157285_10040642	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1092	Open in IMG/M
3300012906\|Ga0157295_10120380	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	748	Open in IMG/M
3300012908\|Ga0157286_10049127	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1074	Open in IMG/M
3300012910\|Ga0157308_10040378	All Organisms → cellular organisms → Bacteria	1165	Open in IMG/M
3300012958\|Ga0164299_10194807	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1166	Open in IMG/M
3300013100\|Ga0157373_10782094	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	703	Open in IMG/M
3300013102\|Ga0157371_11513040	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	524	Open in IMG/M
3300013306\|Ga0163162_11383518	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	800	Open in IMG/M
3300015200\|Ga0173480_10769458	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	611	Open in IMG/M
3300017792\|Ga0163161_11676941	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	562	Open in IMG/M
3300018027\|Ga0184605_10130161	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300018051\|Ga0184620_10181705	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300018466\|Ga0190268_10018481	All Organisms → cellular organisms → Bacteria	2202	Open in IMG/M
3300019279\|Ga0184642_1535761	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300019356\|Ga0173481_10290647	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	755	Open in IMG/M
3300020059\|Ga0193745_1018823	All Organisms → cellular organisms → Bacteria	1505	Open in IMG/M
3300020202\|Ga0196964_10192856	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	939	Open in IMG/M
3300021080\|Ga0210382_10202215	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300022694\|Ga0222623_10189397	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300025912\|Ga0207707_10399397	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1180	Open in IMG/M
3300025921\|Ga0207652_10318977	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1403	Open in IMG/M
3300025935\|Ga0207709_10822260	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	751	Open in IMG/M
3300026067\|Ga0207678_10106018	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2398	Open in IMG/M
3300026075\|Ga0207708_10152889	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1818	Open in IMG/M
3300027876\|Ga0209974_10345515	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	576	Open in IMG/M
3300027886\|Ga0209486_10824921	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	609	Open in IMG/M
3300027909\|Ga0209382_10001802	All Organisms → cellular organisms → Bacteria	32915	Open in IMG/M
3300028715\|Ga0307313_10094962	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300028716\|Ga0307311_10057233	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300028716\|Ga0307311_10113222	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300028717\|Ga0307298_10044246	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300028771\|Ga0307320_10427275	Not Available	533	Open in IMG/M
3300028787\|Ga0307323_10344391	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	534	Open in IMG/M
3300028793\|Ga0307299_10100093	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300028793\|Ga0307299_10413921	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300028814\|Ga0307302_10353203	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300028824\|Ga0307310_10128064	All Organisms → cellular organisms → Bacteria	1154	Open in IMG/M
3300028872\|Ga0307314_10119223	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300028878\|Ga0307278_10435018	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	575	Open in IMG/M
3300028881\|Ga0307277_10461366	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	569	Open in IMG/M
3300030006\|Ga0299907_10425032	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300030620\|Ga0302046_10058700	All Organisms → cellular organisms → Bacteria	3124	Open in IMG/M
3300030903\|Ga0308206_1176266	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	529	Open in IMG/M
3300031091\|Ga0308201_10410280	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	511	Open in IMG/M
3300031547\|Ga0310887_10600085	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	674	Open in IMG/M
3300031854\|Ga0310904_10091857	All Organisms → cellular organisms → Bacteria	1644	Open in IMG/M
3300031892\|Ga0310893_10318933	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	663	Open in IMG/M
3300031903\|Ga0307407_10149469	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1516	Open in IMG/M
3300031995\|Ga0307409_100145101	All Organisms → cellular organisms → Bacteria → Proteobacteria	2051	Open in IMG/M
3300031995\|Ga0307409_101663409	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	667	Open in IMG/M
3300032002\|Ga0307416_101304553	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	832	Open in IMG/M
3300032002\|Ga0307416_101937577	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	692	Open in IMG/M
3300032004\|Ga0307414_10456442	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1122	Open in IMG/M
3300032075\|Ga0310890_10842384	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	728	Open in IMG/M
3300033551\|Ga0247830_10623510	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	854	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.00%
Host-Associated	Host-Associated	25.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.71%
Plants	Host-Associated → Plants	23.39%
Aquatic	Environmental → Aquatic	11.29%
Human	Host-Associated → Human	1.61%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.13%
Freshwater	Environmental → Aquatic → Freshwater	8.06%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.26%
Sediment	Environmental → Aquatic → Sediment	2.42%
Digestive System	Host-Associated → Human → Digestive System	1.61%
Marine	Environmental → Aquatic → Marine	0.81%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.29%
Loam	Environmental → Terrestrial → Soil → Loam	10.48%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.84%
Ice	Environmental → Aquatic → Freshwater → Ice	4.03%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.42%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.61%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.61%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	1.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.61%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.81%
Sand	Environmental → Terrestrial → Soil → Sand	0.81%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.29%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.84%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	4.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.84%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	4.03%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.03%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.42%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.61%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.61%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	1.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.61%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.81%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.81%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	21.77%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	12.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	4.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.84%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	4.03%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.03%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.03%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.42%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.42%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.42%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.42%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.61%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.61%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.61%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	1.61%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.61%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.61%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.61%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.81%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.81%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.81%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.81%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004800	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005873	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_301	Environmental	Open in IMG/M
3300005886	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_205	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012043	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ601 (22.06)	Environmental	Open in IMG/M
3300012187	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ448 (21.06)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012530	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ85 (21.06)	Environmental	Open in IMG/M
3300012678	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ288 (22.06)	Environmental	Open in IMG/M
3300012681	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ272 (21.06)	Environmental	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300020059	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a2	Environmental	Open in IMG/M
3300020202	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_10	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_08107942	3300000033	Soil	VRVAGRCTAAGAGRRAGSWTLEEGGREVEVRGLVPPSCGTDTDQGLTIFAQIEPASPGSEDRLLLRLPD*
JGI10214J12806_107799672	3300000891	Soil	VDPATKGTGGLPDAGAVPVRPDQAPLVRIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLAEDGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKDRLLLRLPD*
JGI10216J12902_1057756611	3300000956	Soil	VDPATKGAGGLPDAEAVPVRPDQAPLVTIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLAEDGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKERLLLRLPD*
C688J14111_100068592	3300001305	Soil	LGRRVRVAGRCTAAGSGRRAGSWTLEESGSTIEVRGLVPSSCGTESTQTITIFAQVEPSAPGSTERLLLRLPD*
F14TB_1074285041	3300001431	Soil	DPAAQPGAVSPAPVDPATEGTGGLPDGEAVPVRTDQAPLVRIGEALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLEEDGSEIEVRGLVPYSCSPTSTANITIFAQIEPKTAGSKDRLLLRLPD*
C688J18823_103085192	3300001686	Soil	VRVAGRCTAAGSGRRAGSWTLEEAGTAIEVRGLVPSSCGTESTQILTIFAQIEPSAPGSAERLLLRLPD*
C688J35102_1202797242	3300002568	Soil	CTAAGAGRRAGSWTLEEAGSAIEVRGLVPSSCNPASTVGLTIFAQIEPKTAGSEERLLLRLPD*
soilL1_100020252	3300003267	Sugarcane Root And Bulk Soil	QNALDIDSLLGRRVRVGGRCTAAGSGRRAGSWTLEDAGFSIEVRGLVPSSCRPESTTDLIIFAQIEPKAAGSSDRLLLRLPD*
Ga0055468_100625172	3300003993	Natural And Restored Wetlands	VPLRAGEAPLVAVQDALEEENLLGRRVRILGQCSAKGEGRRAGSWTLEQDGATIEVRGLVPSSCSPDRGETLTIFAQIEPKARGSRDRILLRLPD*
Ga0063455_1001899731	3300004153	Soil	MLRHSSFSPFLILSIAACSPRGEVERDPRNSAPIAAPPGRADEAPLVRVDEALAADSLLGRRIRVSGYCTAAGAGRRKGSWTLENAGAAIEVRGLVPPSCAPQSTTELTIFAQIEPAASGSSERLLLRLPD*
Ga0063455_1009652941	3300004153	Soil	QDALQVDSLLGRRVRVAGRCTAAGAGRRAGSWTLEEAGSAIEVRGLVPSSCNPASTVGLTIFAQIEPKTAGSEERLLLRLPD*
Ga0063356_1028551082	3300004463	Arabidopsis Thaliana Rhizosphere	PVADPAAQPGAVSPAPVDPATEGTGGLPDGEAVPVRPEQAPLVRIGEALTADSLLGRRVRVLGRCTAAGTGSRAGSWTLEEDGSEIEVRGLVPYSCSPTSTANITIFAQIEPKTAGSKERLLLRLPD*
Ga0058861_117860931	3300004800	Host-Associated	QPGTVNPVPVDPATKGTGGLPDAGAVPVRPDQAPLVRIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLAEDGSEIEVRGLVPYSCGPTSTANITIFAQIEPKTAGSKDRLLLRLPD
Ga0058862_127634861	3300004803	Host-Associated	LGRCTAAGTGRRAGSWTLAEDGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKDRLLLRLPD*
Ga0068869_1012811321	3300005334	Miscanthus Rhizosphere	QPGTVNPAPVDPATKGAAGLPDAEAVPVRPDQAPLVRIGEALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLAEDGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKDRLLLRLPD
Ga0070691_109276532	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	LPDAEAVPVRPDQAPLVRIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLAEEGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKDRLLLRLPD*
Ga0070687_1008197572	3300005343	Switchgrass Rhizosphere	EAVPVRPDQAPLVPIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLAEEGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKDRLLLRLPD*
Ga0070674_1005479142	3300005356	Miscanthus Rhizosphere	VRPDQAPLVRIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLAEEGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKDRLLLRLPD*
Ga0070659_1002429022	3300005366	Corn Rhizosphere	ADPEEARPRTLVVPQESDPAAQPGTVNPVPVDPATKGTGGLPDAGAVPVRPDQAPLVRIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLAEEGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKDRLLLRLPD*
Ga0070659_1003844872	3300005366	Corn Rhizosphere	VDPATKGAGGLPDAEAVPVRPDQAPLVPIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLAEDGSEIEVRGLVPYSCGPTSTANITIFAQIEPKTAGSKDRLLLRLPD*
Ga0070694_1011530991	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	LVRIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLAEDGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKERLLLRLPD*
Ga0070681_106195341	3300005458	Corn Rhizosphere	VDPATKGAGGLPDAEAVPVRPDQAPLVPIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLEEDGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKERLLLRLPD*
Ga0068867_1009321192	3300005459	Miscanthus Rhizosphere	ETQVPVRPSQAPLVHISEVLDADTLLGRRVRIAGRCAAAGAGPRAGSWTLEEAGTTIEVRGLVPSSCGKRSEEQLTIFAQVEPKTAGSPDRLLLRLPD*
Ga0075287_10169482	3300005873	Rice Paddy Soil	VPVRPDQAPLVRIQDALEVDSLLGKRVRVAGRCTAAGVGRRAGSWTLAEGGSEIEVRGLIPYSCQSNSTVNLTIFAQIEPKTAGSPDRLLLRLPD*
Ga0075286_10175282	3300005886	Rice Paddy Soil	LGRRVRVRGHCTAVGAGVRAGSWTLEDEGATIEVRGLVPRSCTTDSARDLTIFAQVEPTRSGSRERLLLRLPD*
Ga0079222_100632851	3300006755	Agricultural Soil	TGGVAARADVPLRPDQAPVVHVRDVISADSLVGRRVRVSGRCTSAGTGPRAGSWILEEEGETIEVRGLVPYSCSSETAQQLTIFAQIEPTAPGSHQRLLLRLPD*
Ga0075421_10000095423	3300006845	Populus Rhizosphere	VPSAGGVPVRPSQAPLVRIQDALESDSLLGRRVRVVGRCTAAGAGRRAGSWTLEEAEFAIEVRGLVPSSCGPNSTTDLTIFAQIEPKAAGSSDRLLLRLPD*
Ga0068865_1013187701	3300006881	Miscanthus Rhizosphere	DPAAQPGTVNPAPVDPATKGAAGLPDAEAVPVRPDQAPLVRIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLAEDGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKDRLLLRLPD*
Ga0079216_101751402	3300006918	Agricultural Soil	LGRRVRIAGRCVARGEGRRAGSWTLDQSGATIEVRGLVPSSCSREEGEELTIFAQIEPQTSGSRERILLRLPS*
Ga0079219_100266482	3300006954	Agricultural Soil	VVHVRDVISADSLVGRRVRVSGRCTSAGTGPRAGSWILEEEGETIEVRGLVPYSCSSETAQQLTIFAQIEPIAPGSHERLLLRLPD*
Ga0079218_109343522	3300007004	Agricultural Soil	VPLRPDQAPLVEVRDALEEDSLLGRRVRIAGRCVARGEGRRAGSWTLDQSGAAIEVRGLVPSSCSREEGEELTIFAQIEPQTSGSRERILL
Ga0105245_102663432	3300009098	Miscanthus Rhizosphere	VDPATKGAGGLPDAEAVPVRPDQAPLVRIGDALTADSLLGRRVRLLGRCTAAGTGRRAGSWTLAEDGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKDRLLLRLPD*
Ga0111538_104473982	3300009156	Populus Rhizosphere	VDPATRGTGGLPDAEAVPVRPDQAPLVRISEALTADSLLGRRVRVFGRCTAAGTGRRAGSWTLEEDGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKERLLLRLPD*
Ga0105242_112119952	3300009176	Miscanthus Rhizosphere	DAEAVPVRPDQAPLVPIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLAEDGSEIEVRGLVPYSCGPTSTANITIFAQIEPKTAGSKDRLLLRLPD*
Ga0126307_100932391	3300009789	Serpentine Soil	REALQADSLLGRRVRVSGRCIARGEGRRAGSWTLDQAGFAIEVRGLVPLSCAPEEQADLTIFAQVEPKTTGSQEHILLRLPD*
Ga0126307_103277701	3300009789	Serpentine Soil	SRESVPLRPDQAPLVGIEEALKTDSLLGHRVRVAGRCTAAGAGRRAGSWTLEEAGSTIEVRGLVPSSCGPTTTVNLTIFAQIEPKALGSKDRLLLRLPD*
Ga0126307_108584901	3300009789	Serpentine Soil	PVRPDQAPLVHLQDALEADSLLGRRVRVSGRCTAAGVGRRAGSWTLEEAGSVIEVRGLVPSSCGPGSTVGLTIFAQIEPKAAGSKDRLLLRLPD*
Ga0126307_110079711	3300009789	Serpentine Soil	VPVRPDQAPLVRIEEALTADSLLGRRVRVLGRCTAAGAGRRAGSWTLEENGTAIEVRGLVPYSCGATSTASLTIFAQIEPKSAGSKDRLLLRLPD*
Ga0126304_101364772	3300010037	Serpentine Soil	VPVRPDQAPLVRIEEALTADSLLGRRVRVLGRCTAAGAGRRAGSWTLEENGTPIEVRGLVPYSCGATSTASLTIFAQIEPKSAGSKDRLLLRLPD*
Ga0126304_102792632	3300010037	Serpentine Soil	MVEVREALDADSLLGRRVRVSGKCIARGEGPRAGSWTLDQAGASIEVRGLVPSSCNQEEKEDLTIFAQIEPKTTGSREHILLRLPD*
Ga0126309_100708832	3300010039	Serpentine Soil	LVRIEEALQVDSLLGRRVRVAGHCTAAGSGRRAGSWTMEDAGSSIEVRGLVPPSCAAASPEQLTIFAQIEPTSSDSKERLLLRLPD*
Ga0126309_104101072	3300010039	Serpentine Soil	VPVRADQAPLVRILEVLEVDSLLGRRVRVAGTCTAAGAGRRAGSWTLEDEGSTIEVRGLVPYSCGRSSTTPLTIFAQVEPKTAGSRERLLLRLPD*
Ga0126309_109831972	3300010039	Serpentine Soil	LAADSLLGRRIRVSGHCTAAGAGRRKGSWTLENGGAAIEVRGLVPPSCAPQSTTELTIFAQIEPAASGSSERLLLRLPD*
Ga0126308_100381462	3300010040	Serpentine Soil	VDSLLGRRVRVAGRCTAAGAGRRAGSWTLEDTGSAIEVRGLVPSSCNPASTVGLTIFAQIEPKTAGSKERLLLRLPD*
Ga0126308_110990402	3300010040	Serpentine Soil	DALEVDSLLGRRVRVSGHCTAAGSGRRAGSWTMEDAGSAIEVRGLVPPSCAAGSLEQLTIFAQIEPTSSESRERLLLRLPD*
Ga0126312_103134232	3300010041	Serpentine Soil	PLRPDQAPLVEVRDAVHADSLLGRRVRVSGRCIARGEGRRAGSWTLDQGGVAIEVRGLVPTSCPPEKPADLTIFAQVEPKATGSQEHILLRLPD*
Ga0126312_105417811	3300010041	Serpentine Soil	VPVRPDQAPLVRIEEALTADSLLGRRVRVLGRCTAAGAGRRAGSWTLEEDGSAIEVRGLVPYSCGATSTASLTIFAQIEPKTA
Ga0126314_100204823	3300010042	Serpentine Soil	MTPPRADPSGQGPGGLPEGGSVPVRPDQAPLVGIQEALEVDSLLGRRVRVAGRCTAAGAGRRAGSWTLEDTGSAIEVRGLVPSSCNPASTVGLTIFAQIEPKTAGSKERLLLRLPD*
Ga0126311_102421731	3300010045	Serpentine Soil	DPAAQPGTVTPPRADPSGQGPGGLPEGGSVPVRPDQAPLVGIQEALEVDSLLGRRVRVAGRCTAAGAGRRAGSWTLEDTGSAIEVRGLVPSSCNPASTVGLTIFAQIEPKTAGSKERLLLRLPD*
Ga0126311_118963102	3300010045	Serpentine Soil	STTPKGAERTERSAVPLRPDQAPLVEVRDAVHADSLLGRRVRVSGRCIARGEGRRAGSWTLDQGGVAIEVRGLVPTSCPPEKPADLTIFAQVEPKATGSQEHILLRLPD*
Ga0126321_12967511	3300010145	Soil	QRVRVAGRCTASGTGRKAGSWTLEGEGSMIEVRGLVPSSCGSNSTTDLTIFAQIEPKSAGSQDRLLLRLPD*
Ga0134128_102088882	3300010373	Terrestrial Soil	VSGRCTSAGTGPRAGSWILEEEGETIEVRGLVPYSCSSETAQQLTIFAQIEPIAPGSHERLLLRLPD*
Ga0134126_115944561	3300010396	Terrestrial Soil	ATKGAGGLPDAEAVPVRPDQAPLVPISDALTADSLRGRRVRVLGRCTAAGTGRRAGSWTLAEDGSEIEVRGLVPYSCGPTSTANITIFAQIEPKTAGSKDRLLLRLPE*
Ga0134127_103461282	3300010399	Terrestrial Soil	VDPATKGTGGLPEAEAVPVRPDQAPLVRIGEALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLEEDGSEIEVRGLVPYSCGPTSTGNITIFAQIEPKTAGSKERLLLRLPD*
Ga0134122_100672463	3300010400	Terrestrial Soil	VDPATKGTGGLPDSEAVPVRPDQAPLVRIGEALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLEEDGSEIEVRGLVPYSCGPTSTGNITIFAQIEPKTAGSKERLLLRLPD*
Ga0134123_133688041	3300010403	Terrestrial Soil	VHISEVLDADTLLGRRVRIAGRCAAAGAGPRAGSWTLEEAGTTIEVRGLVPSSCGKRSEEQLTIFAQVEPK
Ga0138514_1000724881	3300011003	Soil	LTVDSLVGRRVRVSGHCTAAGAGPRAGSWTLEDAGSSIEVRGLVPSSCFVRSSEELTIFAQVEPVASGSRERLLLRLPD*
Ga0126317_100366782	3300011332	Soil	SDPAAQPGTVNPAPVDPATKGAAGLPDAEAVPVRPDQAPLVRIGDALTADSLLGRRVRVLGRCTAAGTGSRAGSWTLAEEGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKDRLLLRLPD*
Ga0126317_101804292	3300011332	Soil	LGRRVRVSGRCIARGEGLRAGSWTLDQAGVSIEVRGLVPTSCAMEEKVDLTIFAQVEPKTTGSQEHILLRLPD*
Ga0136631_100040956	3300012043	Polar Desert Sand	LASDSLLGRRVRVAGRCVARGEGRRAGSWTLDQEGAAIEVRGLVPTSCAADQGEPLTIFVQVEPKAAGSRDRILLRLPD*
Ga0136622_100992052	3300012187	Polar Desert Sand	SRPGVVAEAGTGLGATDKDGPRRVPVRADQAPLVQVREALTSDSLLGRRVRVAGRCVARGEGRRAGSWTLDQEGAAIEVRGLVPTSCAADQGEPLTIFAQVEPKAAGSRDRILLRLPD*
Ga0150985_1118724543	3300012212	Avena Fatua Rhizosphere	VRVAGRCTAAGAGRRAGSWTLEEAGSAIEVRGLVPSSCNPASTVGLTIFAQIEPKTAGSEERLLLRLPD*
Ga0150985_1168682953	3300012212	Avena Fatua Rhizosphere	VSDPAAQPGTVTPAPVDPAIQGTGGLPDGDAVPVRPDQAPLVRIEQALTADSMLGRRVRVLGRCTAAGTGRRAGSWTLEEDGSEIEVRGLVPYSCGPTSTADITIFAQIEPKTAGSKDRLLLRLPD*
Ga0150984_1031863621	3300012469	Avena Fatua Rhizosphere	RVRVLGRCTAAGAGRRAGSWTLEQDGSEIEVRGLVPYSCGPASTASITIFAQIEPKTAGSKDRLLLRLPD*
Ga0150984_1036960412	3300012469	Avena Fatua Rhizosphere	GRCTAAGIGRRAGSWTLEQDGSEIEVRGLVPYSCGQASTASITIFAQIEPKTAGSKDRLILRLPD*
Ga0136635_100100403	3300012530	Polar Desert Sand	VPLRPDQAPLVGVRDALEADCLLGRRVRIAGRCVARGEGRRAGSWTLGQAGVTIEVRGLVPPSCSRAEGEDLTIFAQIEPQTSGSRDRILLRLPD*
Ga0136615_105279601	3300012678	Polar Desert Sand	NAGREPVRPDQAPLVGVRDALEADSLLGRRVRVSGRCTARGEGRRAGSWTLDQAGATIEVRGLVPTACTPERRENLTIFAQIEPKSTGSPERILLRLPD*
Ga0136613_101619611	3300012681	Polar Desert Sand	RSRPATVEGGSSGGPGIESNAGREPVRPDQAPLVGVRDALEADSLLGRRVRVSGRCTARGEGRRAGSWTLDQAGATIEVRGLVPTACTPERRENLTIFAQIEPKSTGSPERILLRLPD*
Ga0157294_102983811	3300012892	Soil	GSPAPVSDPAAQPGAVNPVPVDPATKGTGGLPDAGAVPVRPDQAPLVRIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLAEDGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKERLLLRLPD*
Ga0157285_100406422	3300012897	Soil	VDPAAKGAGGLPDAEAVPVRPDQAPLVRIGDALTADSLLGRRVRILGRCTAAGTGRRAGSWTLAEDGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKDRLLLRLPD*
Ga0157295_101203802	3300012906	Soil	VDPATKGTGGLPDAGAVPVRPDQAPLVRIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLAEDGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKERLLLRLPD*
Ga0157286_100491272	3300012908	Soil	VDPAAKGAGGLPDAEAVPVRPDQAPLVRIGDALTADSLLGRRVRILGRCTAAGTGRRAGSWTLEEDGSEIEVRGLVPYSCGPTSTAGITIFAQIEPKTAGSKERLLLRLPD*
Ga0157308_100403782	3300012910	Soil	VDPATKGTGGLPDAGAVPVRPDQAPLVRIGDALTVDSLLGRRVRVLGRCTAAGTGRRAGSWTLAEDGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKDRLLLRLPD*
Ga0164299_101948071	3300012958	Soil	PDQAPLVRIGEALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLEEDGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKERLLLRLPD*
Ga0157373_107820942	3300013100	Corn Rhizosphere	VDPATKGAGGLPDAEAVPVRPDQAPLVRIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLAEEGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKERLL
Ga0157371_115130401	3300013102	Corn Rhizosphere	AVPVRPDQAPLVPIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLAEDGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKDRLLLRLPD*
Ga0163162_113835182	3300013306	Switchgrass Rhizosphere	PVDPATKGAAGLPDAEAVPVRPDQAPLVRIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLAEEGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKDRLLLRLPD*
Ga0173480_107694581	3300015200	Soil	VRPDQAPLVRIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLAEDGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKERLLLRLPD*
Ga0163161_116769412	3300017792	Switchgrass Rhizosphere	APVDPATKGAGGLPDAEAVPVRPDQAPLVRIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLAEDGSEIEARGLVPYSCGPTSTANITIFAQIEPKTAGSKDRLLLRLPD
Ga0184605_101301611	3300018027	Groundwater Sediment	PQARPGRQATGGLPEGPSFPGRADQALLVRVEAVLTVDSLLGRRVRVSGHCTAAGAGPRAGSWTLEDAGSSIEVRGLVPSSCAAPSSAELTIFAQIEPAASGSRERLLLRLPD
Ga0184620_101817052	3300018051	Groundwater Sediment	GHCTAAGAGRRAGSWTLEDGGSSIEVRGLVPSSCTVKSGEELTIFAQIEPAASGSSERLLLRLPD
Ga0190268_100184812	3300018466	Soil	VEVRDALEEDSLLGRRVTIAGRWVARGEGRRAGSSTLDQASATIEVRGLVPTSCSREEGEELTIFAQIEPQTSGSRERILLRLPS
Ga0184642_15357611	3300019279	Groundwater Sediment	RIAGRCAAAGAGPRAGSWTLEEDGAAIEVRGLVPSSCGTRSGENLTIFAQIEAKAAGSPDRLLLRLPD
Ga0173481_102906472	3300019356	Soil	VADPAAQPGAVSPAPVDPATEGTGGLPDGEAVPVRPDQAPLVRIGEALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLEEDGSEIEVRGLVPYSCSPTSTANITIFAQIEPKTAGSKERLLLRLPD
Ga0193745_10188233	3300020059	Soil	PQARPGRQATGGPPEGAPFPGRADEAALVRIHAALTVDSLLGRRVRVSGHCTAAGAGPRAGSWTLEDAGSSIEVRGLVPSLCFVQSSQELTIFAQVEPVTSGSRERLLLRLPD
Ga0196964_101928562	3300020202	Soil	SIQQALESDSLLGRRVRVAGKCTAAGAGRRAGSWTLGEAGLTIEVRGLVPYSCGPTSTTDLTIFAQIEPKAAGSTERLLLRLPD
Ga0210382_102022151	3300021080	Groundwater Sediment	SPQDRPGREATGGLPEGPSFPGRADEAPLVRVEAVLTVDSLLGRRVRVSGHCTAAGAGPRAGSWTLEDAGSSIEVRGLVPSSCAAPSSAELTIFAQIEPTASGSRERLLLRLPD
Ga0222623_101893972	3300022694	Groundwater Sediment	PLVRVQAALTADSLLGRRVRVSGHCTAAGAGPRAGSWTLEDAGSSIEVRGLVPSSCAVQSSAELTIFAQIEPAASGSSERLLLRLPD
Ga0207707_103993972	3300025912	Corn Rhizosphere	VRPDQAPLVPIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLEEDGSEIEVRGLVPYSCGPTSTANITIFAQIEPKTAGSKDRLLLRLPD
Ga0207652_103189772	3300025921	Corn Rhizosphere	GTVNPVPVDPATKGTGGLPDAGAVPVRPDQAPLVRIGDALTVDSLLGRRVRVLGRCTAAGTGRRAGSWTLAEDGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKDRLLLRLPD
Ga0207709_108222601	3300025935	Miscanthus Rhizosphere	VRPDQAPLVRIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLAEEGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKDRLLLRLPD
Ga0207678_101060181	3300026067	Corn Rhizosphere	VRPDQAPLVPIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLAEEGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKDRLLLRLP
Ga0207708_101528892	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VRPDQAPLVRIGDALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLAEEGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKERLLLRLPD
Ga0209974_103455151	3300027876	Arabidopsis Thaliana Rhizosphere	TADSLLGRRVRILGRCTAAGTGRRAGSWTLAEDGSEIEVRGLVPYSCGPTSTASITIFAQIEPKTAGSKDRLLLRLPD
Ga0209486_108249211	3300027886	Agricultural Soil	RPDQAPLVEVRDALEEDSLLGRRVRIAGRCVARGEGRRAGSWTLDQSGAAIEVRGLVPSSCSREEGEELTIFAQIEPQTSGSRERILLRLPS
Ga0209382_1000180225	3300027909	Populus Rhizosphere	VPSAGGVPVRPSQAPLVRIQDALESDSLLGRRVRVVGRCTAAGAGRRAGSWTLEEAEFAIEVRGLVPSSCGPNSTTDLTIFAQIEPKAAGSSDRLLLRLPD
Ga0307313_100949622	3300028715	Soil	IQAALTEDSLLGRRVRVSGHCTAAGAGSRAGSWTLEDAGSSIEVRGLVPSSCFVQSSEELTIFAQIEPVASGSRERLLLRLPD
Ga0307311_100572331	3300028716	Soil	GGLPEGASFPGRADEAPLVRIQAALTEDSLLGRRVRVSGHCTAAGAGSRAGSWTLEDAGSSIEVRGLVPSSCFVQSSEELTIFAQIEPVASGSRERLLLRLPD
Ga0307311_101132221	3300028716	Soil	VDSLLGRRVRVSGHCTAAGAGARAGSWTLEDAGLSIEVRGLVPSSCAVRSSAALSIFAQIEPAASGSRERLLLRLPD
Ga0307298_100442461	3300028717	Soil	GPSFPGRADEAPLVRIQAALTVDSLLGRRVRVSGHCTAAGAGSRAGSWTLEDAGSSIEVRGLVPSSCFVQSSEELTIFAQIEPVASGSRERLLLRLPD
Ga0307320_104272752	3300028771	Soil	ESKRDPGSPAPLAGPPVRAGEAPLVRVAEALGVDSLLGRRVRVGGYCTAAGAGRRKGSWTLEDAGASIEVRGLVPPSCAAQSTTELTIFAQIEPAASDSRQRLLLRLPD
Ga0307323_103443912	3300028787	Soil	QEALSVDSLLGRRVRVSGHCTAAGVGRRAGSWTLEDAGSSIEVRGLVPSTCAVQSSAELTIFVQIEPAASGSRERLLLRLPD
Ga0307299_101000933	3300028793	Soil	SFPGRADEAPLVRIQAALTEDSLLGRRVRVSGHCTAAGAGSRAGSWTLEDAGSSIEVRGLVPSSCFVQSSEELTIFAQIEPVASGSRERLLLRLPD
Ga0307299_104139211	3300028793	Soil	ATGGLPAGPSFPGRADEAPLVRVQAALTVDSLLGRRVRVSGHCTAAGAGPRAGSWTLEDAGSSIEVRGLVPSSCAVQTSAELTIFAQIEPAASGSRERLLLRLPD
Ga0307302_103532032	3300028814	Soil	TGGLPEGPSFPGRADEAPLVRVQEALSVDSLLGRRVRVSGHCTAAGVGRRAGSWTLEDAGSSIEVRGLVPSTCAVQSSAELTIFVQIEPAASGSRERLLLRLPD
Ga0307310_101280641	3300028824	Soil	WVPVRPDQAPLVAISEALEADSLLGRRVRVAGKCTSAGEGQRAGVWTLAGADGAIEVRGRVPPSCSADLRQDLTIFAQIELKAAGSRDRLLLRLPD
Ga0307314_101192232	3300028872	Soil	LTEDSLLGRRVRVSGHCTAAGAGSRAGSWTLEDAGSSIEVRGLVPSSCFVQSSEELTIFAQIEPVASGSRERLLLRLPD
Ga0307278_104350181	3300028878	Soil	RVRVSGHCTAAGVGQRAGSWTLEDAGSSIEVRGLVPSTCAVRSSAELTIFAQIEPAASGSRERLLLRLPD
Ga0307277_104613662	3300028881	Soil	VQVREALTVDSLLGRRVRVSGHCTAAGAGRRAGSWTLEDGGSSIEVRGLVPSSCTVKSGEELTIFAQIEPAASGSSERLLLRLPD
Ga0299907_104250322	3300030006	Soil	VDRERVPVRAAQAPLVGVGEALQVDSLLGRRVRVSGRCTARGEGRRAGSWTLDDAGASIEVRGLVPSSCDPDGGEELTIFAQIEPKAPGSRDRLLLRLPD
Ga0302046_100587005	3300030620	Soil	REMGGPDNRSVPVRADQAPLVPVRDALEADSLLGRRVRVAGRCTAAGEGRKANSWTLQAPDAAIEVRGRVPASCSADGGTDLTIFAQIEPRAPGSRDRILLRLPD
Ga0308206_11762662	3300030903	Soil	RAQDAPLVTIQDALDIDSLLGRRVRVGGRCTAAGSGRRAGSWTLEDAGFAIEVRGLVPSSCRADSTTDLIIFAQIEPKAAGSSDRLLLRLPD
Ga0308201_104102802	3300031091	Soil	AKTVPLRPDQAPLISIQQVLDSDSLLGRRVRVPGRCTAAGAGPRAGSWTLEEAGPTIEVRGLVPSSCSPSSTRDLTIFAQIEPKAAGSKDRLLLRLPD
Ga0310887_106000852	3300031547	Soil	PVRPDQAPLVRIGEALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLEEDGSEIEVRGLVPYACGPTSTASITIFAQIEPKTAGSKERLLLRLPD
Ga0310904_100918572	3300031854	Soil	VDPATKGTGGLPDAEAVPVRPDQAPLVRIGEALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLEEDGSEIEVRGLVPYACGPTSTASITIFAQIEPKTAGSKERLLLRLPD
Ga0310893_103189332	3300031892	Soil	DQAPLVRIGEALTADSLLGRRVRVLGRCTAAGTGRRAGSWTLEEDGSEIEVRGLVPYSCGPTSTGNITIFAQIEPKTAGSKERLLLRLPD
Ga0307407_101494692	3300031903	Rhizosphere	LEDDDLLGRRVRVSGRCVARGEGRRAGSWTLDQEGATIEVRGLVPATCAREAGDELTIFAQIEPAGAGGGNRILLRLPD
Ga0307409_1001451013	3300031995	Rhizosphere	TVRDALEDDDLLGRRVRVSGRCVARGEGRRAGSWTLDQEGATIEVRGLVPATCAREAGDELTIFAQIEPAGAGGGNRILLRLPD
Ga0307409_1016634091	3300031995	Rhizosphere	QADPSAEGPGGLPKGGAVPVRPDQAPLVRIQDALEVDSLLGRRVRVAGRCTAAGAGRRAGSWTLEDAGSTIEVRGLVPSSCGPSSEVDLTIFAQIEPKTAGSKERLLLRLPD
Ga0307416_1013045532	3300032002	Rhizosphere	ADPAVEPGTMNPPRADPSNRGTAGLPSSGAVPVRPDQAPLVRIQEVLEADSLLGRRVRVAGKCTAAGAGRRAGSWTLEEGGSMIEVRGLVPYSCGSNSSVDLTIFAQIEPKAAGSKERLLLRLPD
Ga0307416_1019375771	3300032002	Rhizosphere	VRVAGRCTAAGAGRRAGSWTLEDSGSAIEVRGLVPSSCNPASTVDLTIFAQIEPKTAGSKERLLLRLPD
Ga0307414_104564421	3300032004	Rhizosphere	VRAHQAQLVTVRDALEDDDLLGRRVRVSGRCVARGEGRRAGSWTLDQEGATIEVRGLVPATCAREAGDELTIFAQIEPAGAGGGNRILLRLPD
Ga0310890_108423841	3300032075	Soil	SLLGRRVRVLGRCTAAGTGRRAGSWTLEEDGSEIEVRGLVPYACGPTSTASITIFAQIEPKTAGSKERLLLRLPD
Ga0247830_106235102	3300033551	Soil	CTAAGTGRRAGSWTLEEDGSEIEVRGLVPYACGPTSTASITIFAQIEPKTAGSKERLLLRLPD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069455

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences