Metagenome / Metatranscriptome Family F069414

Overview

Basic Information

• Family ID: F069414
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 124
• Average Sequence Length: 42 residues
• Representative Sequence: WKPTPRAPAKTKEELREMLAQAVRNTQPETETKPLPKAKKGRR
• Number of Associated Samples: 85
• Number of Associated Scaffolds: 123

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 9.65 %
• % of genes near scaffold ends (potentially truncated): 70.97 %
• % of genes from short scaffolds (< 2000 bps): 83.87 %
• Associated GOLD sequencing projects: 77
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (58.871 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (38.710 % of family members)
• Environment Ontology (ENVO): Unclassified (70.161 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (52.419 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 21.13%
  β-sheet: 0.00%
  Coil/Unstructured: 78.87%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 123 Family Scaffolds
PF02559	CarD_CdnL_TRCF	1.63
PF00589	Phage_integrase	1.63
PF13328	HD_4	0.81
PF07310	PAS_5	0.81
PF04185	Phosphoesterase	0.81
PF01068	DNA_ligase_A_M	0.81
PF13442	Cytochrome_CBB3	0.81
PF04116	FA_hydroxylase	0.81
PF11604	CusF_Ec	0.81
PF09140	MipZ	0.81
PF13181	TPR_8	0.81
PF02796	HTH_7	0.81
PF04909	Amidohydro_2	0.81
PF00239	Resolvase	0.81
PF00313	CSD	0.81
PF03118	RNA_pol_A_CTD	0.81
PF01135	PCMT	0.81
PF02371	Transposase_20	0.81
PF04986	Y2_Tnp	0.81
PF00665	rve	0.81
PF01609	DDE_Tnp_1	0.81
PF13565	HTH_32	0.81
PF04324	Fer2_BFD	0.81
PF10129	OpgC_C	0.81
PF02737	3HCDH_N	0.81
PF00501	AMP-binding	0.81
PF00106	adh_short	0.81

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 123 Family Scaffolds
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	0.81
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.81
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.81
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.81
COG5388	Uncharacterized conserved protein	Function unknown [S]	0.81
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.81
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.81
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.81
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.81
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.81
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.81
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.81
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.81
COG3000	Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily	Lipid transport and metabolism [I]	0.81
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.81
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.81
COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	Transcription [K]	0.81
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.81
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.81
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.81
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	0.81
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.81
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.81
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	0.81
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.81
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.81
COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	Cell cycle control, cell division, chromosome partitioning [D]	0.81
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.81
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.81
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	0.81
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.81

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.87 %
Unclassified	root	N/A	41.13 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.87 %
Unclassified	root	N/A	41.13 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.87 %
Unclassified	root	N/A	41.13 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	54.84 %
Unclassified	root	N/A	41.13 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	47.58 %
Unclassified	root	N/A	41.13 %
Oligoflexia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia	0.81 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.81 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.81 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.13 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	36.29 %
Bdellovibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales	0.81 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.81 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.81 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.81 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.13 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	26.61 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	2.42 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.81 %
Bdellovibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae	0.81 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.81 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.81 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.81 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.13 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	22.58 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2.42 %
Massilia group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group	0.81 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.81 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.81 %
Ruegeria	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria	0.81 %
Bdellovibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → Bdellovibrio	0.81 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.13 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2.42 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.61 %
Bradyrhizobium cosmicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium cosmicum	1.61 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.61 %
unclassified Bdellovibrio	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → Bdellovibrio → unclassified Bdellovibrio	0.81 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.81 %
Massilia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia	0.81 %
Ruegeria atlantica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → Ruegeria atlantica	0.81 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.81 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.81 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.81 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.13 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2.42 %
Bradyrhizobium cosmicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium cosmicum	1.61 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1.61 %
Massilia rubra	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → Massilia rubra	0.81 %
Bdellovibrio sp. qaytius	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → Bdellovibrio → unclassified Bdellovibrio → Bdellovibrio sp. qaytius	0.81 %
Bradyrhizobium sp. 44	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 44	0.81 %
Bradyrhizobium sp. JYMT SZCCT0180	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0180	0.81 %
Rhizobium mongolense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium mongolense	0.81 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.81 %
Ruegeria atlantica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → Ruegeria atlantica	0.81 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.81 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.81 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001867|JGI12627J18819_10380563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	573
3300003152|Ga0052254_1132681	All Organisms → cellular organisms → Bacteria	882
3300005363|Ga0008090_15809636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium cosmicum	630
3300005439|Ga0070711_100764104	Not Available	818
3300005533|Ga0070734_10128639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1477
3300005548|Ga0070665_102139214	Not Available	564
3300005764|Ga0066903_100262023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2684
3300005764|Ga0066903_103930631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	797
3300006163|Ga0070715_10032145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2135
3300006174|Ga0075014_100512703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	673
3300006871|Ga0075434_101426570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium cosmicum	702
3300010047|Ga0126382_11795972	Not Available	576
3300010366|Ga0126379_11266052	Not Available	844
3300010396|Ga0134126_10266207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2023
3300011120|Ga0150983_12093919	Not Available	654
3300012373|Ga0134042_1131358	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	805
3300016294|Ga0182041_10491437	Not Available	1062
3300016294|Ga0182041_10567874	Not Available	993
3300016294|Ga0182041_10639093	Not Available	938
3300016319|Ga0182033_10632609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	932
3300016319|Ga0182033_10946585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	764
3300016319|Ga0182033_11113726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	705
3300016341|Ga0182035_10021446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	4017
3300016341|Ga0182035_10734622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	862
3300016341|Ga0182035_11696612	Not Available	571
3300016357|Ga0182032_10468076	All Organisms → cellular organisms → Bacteria → Proteobacteria	1031
3300016357|Ga0182032_11485796	Not Available	588
3300016371|Ga0182034_10595748	Not Available	932
3300016387|Ga0182040_10245066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1343
3300016387|Ga0182040_10819728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	768
3300016387|Ga0182040_10837979	Not Available	760
3300016387|Ga0182040_11872548	Not Available	514
3300016404|Ga0182037_10636581	Not Available	908
3300016404|Ga0182037_11546146	Not Available	589
3300016422|Ga0182039_10842781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	816
3300016445|Ga0182038_11594121	Not Available	587
3300017947|Ga0187785_10590792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	568
3300017970|Ga0187783_10048746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3126
3300020579|Ga0210407_10232726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1434
3300020582|Ga0210395_10907971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	654
3300021560|Ga0126371_11070332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	946
3300025939|Ga0207665_10378411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 44	1074
3300026817|Ga0207775_113468	Not Available	624
3300026921|Ga0207860_1027772	Not Available	654
3300027105|Ga0207944_1002493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1580
3300027703|Ga0207862_1010189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2754
3300028779|Ga0302266_10192663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium mongolense	777
3300030730|Ga0307482_1045198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → Ruegeria atlantica	1050
3300030730|Ga0307482_1212078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	593
3300031544|Ga0318534_10493610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	700
3300031544|Ga0318534_10661617	All Organisms → cellular organisms → Bacteria	591
3300031564|Ga0318573_10612943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	586
3300031572|Ga0318515_10257513	Not Available	936
3300031573|Ga0310915_10055580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2569
3300031681|Ga0318572_10911959	Not Available	522
3300031682|Ga0318560_10476672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	676
3300031713|Ga0318496_10507644	Not Available	667
3300031719|Ga0306917_10315357	Not Available	1210
3300031719|Ga0306917_10681822	Not Available	808
3300031719|Ga0306917_11042610	Not Available	638
3300031720|Ga0307469_10411920	All Organisms → cellular organisms → Bacteria → Proteobacteria	1158
3300031736|Ga0318501_10099423	All Organisms → cellular organisms → Bacteria → Proteobacteria	1449
3300031744|Ga0306918_10259348	All Organisms → cellular organisms → Bacteria → Proteobacteria	1329
3300031744|Ga0306918_10776776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	748
3300031744|Ga0306918_11038396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → Massilia rubra	636
3300031763|Ga0318537_10381505	Not Available	520
3300031763|Ga0318537_10381505	Not Available	520
3300031768|Ga0318509_10455727	Not Available	715
3300031769|Ga0318526_10171790	Not Available	884
3300031781|Ga0318547_10264919	Not Available	1038
3300031792|Ga0318529_10226586	Not Available	869
3300031796|Ga0318576_10487001	Not Available	582
3300031796|Ga0318576_10525201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	558
3300031797|Ga0318550_10215564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	930
3300031797|Ga0318550_10390294	Not Available	674
3300031880|Ga0318544_10098526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1100
3300031890|Ga0306925_10021529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6443
3300031890|Ga0306925_10142895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2573
3300031897|Ga0318520_10693070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	636
3300031910|Ga0306923_11463723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	716
3300031912|Ga0306921_12725080	All Organisms → cellular organisms → Bacteria	507
3300031942|Ga0310916_10308860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1340
3300031942|Ga0310916_11440336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	563
3300031946|Ga0310910_10443623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1030
3300031946|Ga0310910_10590540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	881
3300031947|Ga0310909_10143083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1960
3300031947|Ga0310909_10671434	Not Available	862
3300031954|Ga0306926_10346210	All Organisms → cellular organisms → Bacteria → Proteobacteria	1838
3300031954|Ga0306926_11494556	All Organisms → cellular organisms → Bacteria	780
3300031954|Ga0306926_11647365	All Organisms → cellular organisms → Bacteria → Terrabacteria group	734
3300032001|Ga0306922_10377000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1521
3300032001|Ga0306922_10909372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0180	913
3300032025|Ga0318507_10288956	Not Available	713
3300032035|Ga0310911_10180688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1195
3300032035|Ga0310911_10322590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	890
3300032041|Ga0318549_10366988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	649
3300032044|Ga0318558_10462968	Not Available	632
3300032059|Ga0318533_10462551	Not Available	929
3300032063|Ga0318504_10119542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1195
3300032068|Ga0318553_10430671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	691
3300032076|Ga0306924_11761514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	647
3300032089|Ga0318525_10234808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	943
3300032089|Ga0318525_10665798	Not Available	530
3300032094|Ga0318540_10335559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	730
3300032261|Ga0306920_101636722	Not Available	914
3300032261|Ga0306920_102415419	Not Available	725
3300032828|Ga0335080_10007402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	11388
3300032892|Ga0335081_11212810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	859
3300033289|Ga0310914_10597598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → Bdellovibrio → unclassified Bdellovibrio → Bdellovibrio sp. qaytius	995
3300033289|Ga0310914_10733947	All Organisms → cellular organisms → Bacteria → Proteobacteria	884
3300033289|Ga0310914_11116934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	689
3300033289|Ga0310914_11406204	Not Available	601
3300033289|Ga0310914_11639944	Not Available	547
3300033290|Ga0318519_10539856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	705

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.39%
Host-Associated	Host-Associated	1.61%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.77%
Aquatic	Environmental → Aquatic	1.61%
Plants	Host-Associated → Plants	1.61%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.61%
Freshwater	Environmental → Aquatic → Freshwater	0.81%
Sediment	Environmental → Aquatic → Sediment	0.81%
Peat	Environmental → Terrestrial → Peat	0.81%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.87%
Loam	Environmental → Terrestrial → Soil → Loam	8.87%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.23%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.81%

Subtype

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	75.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	8.06%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.45%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.23%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.42%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.81%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.81%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	38.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	33.06%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.03%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.03%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.42%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.61%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.61%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.61%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Sediment	0.81%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.81%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.81%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.81%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.81%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental
3300003152	Freshwater sediment microbial communities from Loktak Lake, India	Environmental
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental
3300012373	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental
3300026817	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 17 (SPAdes)	Environmental
3300026921	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 28 (SPAdes)	Environmental
3300027105	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF018 (SPAdes)	Environmental
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental
3300028779	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_2	Environmental
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A100DRAFT_10582253	3300000655	Forest Soil	MTTWKPRPREHAKTKAELQEMLAKAVRNTQPQDEPKPLPKPKK
JGI12627J18819_103805631	3300001867	Forest Soil	TKAELREMLAKAVRNTTRPKTHTEPSPNTKKGRR*
Ga0052254_11326812	3300003152	Sediment	MPRQAAKTKAELREMLAQAVRNTPPPDTEPEPLPTTKKDQ*
Ga0008090_158096361	3300005363	Tropical Rainforest Soil	MLLMTEWKPTPRAPAKTKEELREMLAQAVRNTQPETETKPPPKAKKGRR*
Ga0070711_1007641042	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	PTPRAPAKTKAELREMLAQAVRNTQPQPQDEPKRLPKIKKGRH*
Ga0070734_101286391	3300005533	Surface Soil	MTSWKLTPREPAKTKAELREMLAQAVRNTQPQTEPQPLPKAKKGRR
Ga0070735_100528464	3300005534	Surface Soil	MSQWIPTPREPAKTKAELREMLAEAVRNTAHPEPKLPEAPKPLPKASKDRD*
Ga0070665_1021392141	3300005548	Switchgrass Rhizosphere	MTKPNPNPRPPTQSKAELREMLAQAVRNTQPEKAKPPAKAKKAQA*
Ga0066903_1002620233	3300005764	Tropical Forest Soil	MTSWKPTPRAPAKTKEELRDTLAQAVRNTQPETETKPLPKTKKGRR*
Ga0066903_1039306313	3300005764	Tropical Forest Soil	MTSWKPTPRAPAKTKEELREMLAQAVRNTQPETETKPPPKAKKGRR*
Ga0070715_100321452	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MTSWKPTPRAPAKTKAELREMLAQAVRNTQPKPQDEPKPLPKTKKGRR*
Ga0075014_1005127031	3300006174	Watersheds	MISWKPRPREPAKTKAELREMLAQAVRNTQPKTEAKLMPKAK
Ga0075434_1014265701	3300006871	Populus Rhizosphere	MPREPAKTKAELREMLAEAVRNTQPQGETKPSSKAKKGRG*
Ga0126382_117959721	3300010047	Tropical Forest Soil	AELREMLAQAVRNTQPQTESKPLPKAKKGRRVAAG*
Ga0126370_114560373	3300010358	Tropical Forest Soil	MTTRKPKPRERAKTKAELQEMLAQAVRNTQPQAEP
Ga0126379_112660523	3300010366	Tropical Forest Soil	MSPWKPTSAKTKTELREMLAQAVRNTQPQTETKPTPKPLPKA
Ga0134126_102662071	3300010396	Terrestrial Soil	PTPREPAKTKAEMREMLAQAVRNTQPQTETERPPKVKKSRRVAAD*
Ga0126383_134829181	3300010398	Tropical Forest Soil	RPRERAKTKAELQEILAKAVRNTQPQDEPEPLPKPKKRRRAADG*
Ga0150983_120939191	3300011120	Forest Soil	PKPREPAKSKAELREMLAEAVRNTQQQTEPKTKPKAKKDRRVGAD*
Ga0134042_11313583	3300012373	Grasslands Soil	EPPKTKAELREMLAEAVRNTQSDTTPQSKPKRSRD*
Ga0182041_104914372	3300016294	Soil	MNSWKATPRTPAKTKQELREMLAQAVRNTQPETETKP
Ga0182041_105678741	3300016294	Soil	NRRRQKTKTALREMLAEAARNTQPQPATKPKPKPLPKAKKGGR
Ga0182041_106390932	3300016294	Soil	MRPWKPTPAKTKTELREMLAEAFRNTQPSQPETKPKSKPLPKAKKGRGTD
Ga0182033_106326092	3300016319	Soil	MPREPAKTKAELREMLAQAVRNTKPQTETKPLPKAKKGRRVAAD
Ga0182033_109465852	3300016319	Soil	MTAWKPTPREPAKTKQELREMLAQAVRNTQPETETRPLPKAKMGR
Ga0182033_111137262	3300016319	Soil	RAPAKTKEELREMLTQAVRNTQPETETKPLPKAKKGRR
Ga0182035_100214466	3300016341	Soil	TSWKPTPRAPAKTKEELREMLAQAVRNTQPETETKRLPKAKEGR
Ga0182035_107346223	3300016341	Soil	MTSWKPTPREPAKTKQELREMLAQAVRNTQPETET
Ga0182035_116966122	3300016341	Soil	MTSWKPTPHEPARTKAELREMLAQAVHNTQPQTETEPLPKAKKGRRVAAG
Ga0182032_104680761	3300016357	Soil	KAELREMLAQAVRNTQPQTETEPLPKAKKGRRVAAG
Ga0182032_114857961	3300016357	Soil	KTKTELREMLAQAVRNTQPQTETKPKPKPLPKAKKGRR
Ga0182034_105957481	3300016371	Soil	MTACKPTPREPAKTKQELREMLAQAVRNTEPETETKPLPKAKKGRS
Ga0182040_102450661	3300016387	Soil	WKPTSAKTKTELREMLAQAVRNTQPQTETKPKPKPLPKAKKGRR
Ga0182040_108197282	3300016387	Soil	MTAWKPTPRAPAKTKEELREMLAQAVRNTQPETEPKPLPKAKEQ
Ga0182040_108379791	3300016387	Soil	ASLLFMPPWKPTTTKTKTELREMLAEAVRNTQPQTETKPKPKPLPKAKKGRR
Ga0182040_118725481	3300016387	Soil	TPRAPAKSKEELREMLAQAVRNTQPETEPKPLPKLKKGRR
Ga0182037_106365812	3300016404	Soil	KPTPRAPAKTKEELREMLAQAVRNTEPETETKPLPKAKKGRS
Ga0182037_115461461	3300016404	Soil	PREPARTKAELREMLAQAVRNTQPQTETEPLPKAKKGRRVAAG
Ga0182039_108427812	3300016422	Soil	MTSWKPTPRAPAKTKEELREMLAQAVRNTQPETETKPLPKA
Ga0182039_113717503	3300016422	Soil	MTTWKPRPREQAKTKRELQEMLAKAVRNTQPQAEPKPLP
Ga0182038_115941211	3300016445	Soil	WKPTPRAPAKTKEELREMLAQAVRNTQPETKPKPLPKPKKGRR
Ga0187785_105907921	3300017947	Tropical Peatland	AKTKTELREMLAQAVRNTQPQTETKPTPKPLPKAKKGRR
Ga0187783_100487465	3300017970	Tropical Peatland	MNSWKPTPRTPAKTKDELREMLAEAVRNTQPQTETKPLPQANKPLPQAKKGRR
Ga0206350_112506021	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	MTTWKPKPREQAKTKAELQEMLAKAVRNTQPQAEPKPFPKPKKR
Ga0210407_102327261	3300020579	Soil	MAQWKSAREPKKTKAELYEMLAQAVRNTQPRPKRPPR
Ga0210395_109079711	3300020582	Soil	REPKTKAELYEMLAEAVRNTQPEKKPPPKAKTGRG
Ga0126371_110703321	3300021560	Tropical Forest Soil	KPTPRAPAKTKEELREMLAQAVRNTQPQTEPKPLPKPKKGRR
Ga0207665_103784113	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	PAKTKAELREMLAQAVRNTQPQPQDEPKRLPKIKKGRH
Ga0207775_1134681	3300026817	Tropical Forest Soil	MNSWKPTPRAPAKSKEELREMLAQAVRNTQPETETKPVPKAKKGRR
Ga0207860_10277723	3300026921	Tropical Forest Soil	MSPWKPTSAKTKTELREMLAQAVRNTQPQTETKPKPKPLP
Ga0207944_10024931	3300027105	Forest Soil	KSKAELREMLAEAVRNTQQQTEPKTKPKAKKDRRVGAD
Ga0207862_10101895	3300027703	Tropical Forest Soil	MTSWKPTPRTPAKTKEELREMLAQAVRNTQPETETKPLLKAKNGRR
Ga0302266_101926631	3300028779	Bog	TKAEPREMLAEAVRNTQPEPKGPLKPKKGRARVPANAI
Ga0307482_10451982	3300030730	Hardwood Forest Soil	AKTKAELREMLAEAVRNTQPKTETKPLPKAKKDRR
Ga0307482_12120781	3300030730	Hardwood Forest Soil	REPAKTKAELREMLAQAVRNTQPQTETKPLPKAKKGRRVAAG
Ga0318534_104936104	3300031544	Soil	PICCLLMTAWKPTPRAPAKTKEELRKMLAQAVRNTKPETERKPLPKPKKGRR
Ga0318534_106616172	3300031544	Soil	MTSWVPTPRAPAKTKEELREMLAQVVRKTQPETETKPPPKAKKGRR
Ga0318573_106129431	3300031564	Soil	MTSWKPTPRAPAKTKEELREMLAQAVRNTQPETETKPLPK
Ga0318515_102575132	3300031572	Soil	LMSPWKPTSAKTKTELREMLAQAVRNTQPQTETKPKPKPLPKAKKGRR
Ga0310915_100555805	3300031573	Soil	MRPWKPTPAKTKTELREMLAEAVRNTQPSQPETKPKSKPLPKAKKGRGTD
Ga0310915_101528842	3300031573	Soil	MTSWKPREPKTKAELREMLAEAVRNTQPQPQPEIKKLVPKAKKGRR
Ga0318572_109119591	3300031681	Soil	TKAELREMLAQAVRNTQPQTETEPLPKAKKGRRVAAG
Ga0318560_104766721	3300031682	Soil	MSPWKPTPAKTKTALREMLAEAARNTQPQPATKPKPKPLP
Ga0318496_105076441	3300031713	Soil	PAKTKEELREMLAQAVRNTQPETETKPLPKAKKGRR
Ga0306917_103153572	3300031719	Soil	MYLSPWKPTPGKTKTELREMLAEAVRNTQPQPQPEIKKPVPKAKLGQ
Ga0306917_106818221	3300031719	Soil	PRAPAKTKEELREMLAQVVRKTQPETETKPPPKAKKGRR
Ga0306917_110426101	3300031719	Soil	TPRAPAKTKEELREMLAQAVRNTQSETEPKPLPKPKKGRP
Ga0307469_104119202	3300031720	Hardwood Forest Soil	MTSWKPTPRAPAKTKAELREMLAQAVRNTQPKPQDEPKPLPKTKKGRR
Ga0318501_100994234	3300031736	Soil	MTAWKPTPRAPAKTKEELREMLAQAVRNTQPETEPKPLPKPKKGRR
Ga0306918_102593484	3300031744	Soil	IPICCLLMTAWKPTPRAPAKTKEELREMLAQAVRNTQPETEPKPLPKPKKGRR
Ga0306918_107767761	3300031744	Soil	TPRAPAKTKEELREMLAQAVRNTQPETEPKPLPKPKKGRR
Ga0306918_110203152	3300031744	Soil	MTSWKPREPKTKAELREMLAEAVRNTQPQPEIKKPVPKAKKGRR
Ga0306918_110383962	3300031744	Soil	MTSWKPTSSPTAKTKAELREMLAEAVRNTQPQTETKPLP
Ga0318537_103815051	3300031763	Soil	MRPWKPTPAKTKTELREMLAEAVRNTQPQPKPEPKPKKDRREIGDG
Ga0318537_103815052	3300031763	Soil	PYVLLMSPWKPTSAKTKTELREMLAHAVRNTQPQTETKPKPKPLPKAKKGRR
Ga0318509_104557271	3300031768	Soil	LMTAWKPTPRAPAKTKEELREMLAQAVRNTQPETEPKPLPKPKKGRR
Ga0318526_101717901	3300031769	Soil	MSPWKPTSAKTKTELREMLAQAVRNTQPQTETKPKPKPLPK
Ga0318547_102649193	3300031781	Soil	PHVLLMRPWKPTPAKTKTELREMLAEAVRNTQPSQPETKPKSKPLPKAKKGRGTD
Ga0318529_102265862	3300031792	Soil	YPHVLLMSPWKPTPAETKTGLRAMLAEAVRNTQPQPATKPKPKPLPKAKKGGR
Ga0318576_104870012	3300031796	Soil	MSPWKPTSAKTKTELREMLAQAVRNTQPQTETKPKPKPLPKAK
Ga0318576_105252011	3300031796	Soil	TSAKTKTELREMLAQAVRNTQPQTETKPTPKPLPKAKKGRR
Ga0318550_102155644	3300031797	Soil	MTAWKPTPRAPAKTKEELRKMLAQAVRNTKPETEP
Ga0318550_103902942	3300031797	Soil	KPTPRAPAKTKEELREMLAQAVRNTQPETETKPLPKAKKGRR
Ga0318544_100985261	3300031880	Soil	IPICCLLMTAWKPTPRAPAKTKEELRKMLAQAVRNTKPETERKPLPKPKKGRR
Ga0306925_100215291	3300031890	Soil	MTSWKPTSSPTAKTKAELREMLAEAVRNTQPQTETKPL
Ga0306925_101428951	3300031890	Soil	MTSWKPTPRAPAKTKEELREMLAQAVRNTQPETETKPLPKIKK
Ga0318520_106930701	3300031897	Soil	PICCLLMTEWKPTPRAPAKTKEELREMLAQAVRNTQPETEPKPLPKPKKGRR
Ga0306923_114637232	3300031910	Soil	MTSWKPTPRAPAKTKEELREMLAQAVRNTEPETETKPLPKAKKGRS
Ga0306921_127250801	3300031912	Soil	MTSWKPTPRAPAKTKEELREMLAQAVRNTQPETETKP
Ga0310916_103088601	3300031942	Soil	MTSWVPTPRAPAKTKEELREMLAQVVRKTQPETETKP
Ga0310916_114403361	3300031942	Soil	MTSWKPTPRAPAKTKEELREMLAQAVRNTQPETETK
Ga0310913_107434781	3300031945	Soil	YAPREADDEEKTKTELREMLAEAVRNTQPQTETKPKPKPLPKAKKGRR
Ga0310910_104436231	3300031946	Soil	MLFMPPWKPTTTKTKTELREMLAEAVRNTQPQTETKPKPKPLPKAKKGRR
Ga0310910_105905402	3300031946	Soil	AELREMLAQAVRNTQPQTETEPLPKAKKGRRVGFVHSQP
Ga0310909_101430837	3300031947	Soil	MSPWKPTSAKTKAELREMLAQAVRNTQPQTETKPKPKPLPKA
Ga0310909_106714342	3300031947	Soil	MRPWKPTPAKTKTELREMLAEAVRNTQPSQPETKPKSKPLPTAKKGRGTD
Ga0306926_103462103	3300031954	Soil	MSPWKPTPGKTKTELREMLAEAVRNTQPQPEIKPKPQTETKPSSKAKKRSSRDDVP
Ga0306926_114945561	3300031954	Soil	PREPARTKAQLREMLAQAVRNTQPQTETEPLPKAKKGRRVAAG
Ga0306926_116473651	3300031954	Soil	MTSWKPTPRAPAKTKEELREMLAQAVRNTQPETET
Ga0306926_120709713	3300031954	Soil	MTTWKPKPREQAKTKAELQEMLAKAVRNTQPQGEPKPLP
Ga0306922_103770003	3300032001	Soil	TKAELQEMLAKAVRNTQPQDEPKPLPKPKKRPSPRG
Ga0306922_109093722	3300032001	Soil	APAKTKEELREMLAQAVRNTQPETEPKPLPKPKKGRR
Ga0318507_102889561	3300032025	Soil	TAWKPTPRAPAKTKEELREMLAQAVRNTQPETETKPPPKAKKGRR
Ga0310911_101806884	3300032035	Soil	MTAWKPTPRAPAKTKEELRKMLAQAVRNTKPETERKPLPKPKKGRR
Ga0310911_103225902	3300032035	Soil	SWKPTPRAPAKTKEELREMLAQAVRITQPETETKPLPKAKKGRR
Ga0318549_103669881	3300032041	Soil	MTAWKPTPRAPAKTKEELRKMLAQAVRNTKPETERKPLP
Ga0318558_104629681	3300032044	Soil	WKPTPRAPAKTKEELREMLAQAVRNTQPETETKPLPKAKKGRR
Ga0318533_104625511	3300032059	Soil	RAPAKTKEELREMLAQAVRNTQPETETKPPPKAKKGRR
Ga0318504_101195424	3300032063	Soil	MTAWKPTPRAPAKTKEELRKMLAQAVRNTKPETERKPLPKPKKG
Ga0318553_104306713	3300032068	Soil	MTAWKPTPRAPAKTKEELRKMLAQAVRNTKPETERKPLPKPK
Ga0306924_117615141	3300032076	Soil	MTSWKPTPRAPAKTKEELREMLAQAVCNTQPETETKPLPKAKK
Ga0318525_102348081	3300032089	Soil	MSPWKPTSAKTKTELREMLAQAVRNTQPQTETKPKPKPLPKAKKGRR
Ga0318525_106657982	3300032089	Soil	WVPTPRAPAKTKEELREMLAQVVRKTQPETETKPPPKAKKGRR
Ga0318540_103355592	3300032094	Soil	GRHPYVPLMSPWKPTSAKTKLREMLAQAVRNTQPQTETKPKPKPLPKAKKGRR
Ga0306920_1016367221	3300032261	Soil	PREPKTKAEPREMLAEAVRNTQPETEPKPLPKPKKGRR
Ga0306920_1024154191	3300032261	Soil	RAPAKTKEELREMLAQAVRNTQPETEPKPLPKPKKGRR
Ga0335080_100074022	3300032828	Soil	MPRTPAKTKDELREMLAQAVRNTQPQTEPEPPLPKVKKGH
Ga0335081_112128101	3300032892	Soil	AKTKDELREMLAQAVRNTQPQTEPEPPLPKVKKGH
Ga0310914_105975982	3300033289	Soil	PRAPAKTKEELREMLAQAVCNTQPETETKPLPKAKKGRR
Ga0310914_107339471	3300033289	Soil	MTSWKPTPRAPAKTKEELREMLAQAVRNTQPETETKPLPKAK
Ga0310914_111169342	3300033289	Soil	TPRAPAKTKEELREMLAQAVRNTQPETETKPLPKAKKGRR
Ga0310914_114062041	3300033289	Soil	REPAKTKAQLQEMLAQAVRNTQPANEPKPLLKPRKRPSPRG
Ga0310914_116399441	3300033289	Soil	PWKPTPGKTKTELREMLAEAVRNTQPQPQPEIKKPVPKAKKGRR
Ga0318519_105398562	3300033290	Soil	PRAPAKTKEELREMLAQAVRNTQPETETKPLPKAKKGRR