Metagenome / Metatranscriptome Family F069293

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069293
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	85 residues
Representative Sequence	MVEKTRKIAKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFARE
Number of Associated Samples	102
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	21.77 %
% of genes near scaffold ends (potentially truncated)	34.68 %
% of genes from short scaffolds (< 2000 bps)	83.06 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (63.710 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (8.064 % of family members)
Environment Ontology (ENVO)	Unclassified (25.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (38.710 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.78% β-sheet: 15.60% Coil/Unstructured: 48.62%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF04972	BON	7.26
PF00216	Bac_DNA_binding	6.45
PF00571	CBS	3.23
PF00011	HSP20	3.23
PF04392	ABC_sub_bind	2.42
PF13392	HNH_3	2.42
PF01988	VIT1	1.61
PF02554	CstA	1.61
PF13442	Cytochrome_CBB3	1.61
PF14864	Alkyl_sulf_C	0.81
PF13185	GAF_2	0.81
PF07732	Cu-oxidase_3	0.81
PF01810	LysE	0.81
PF01613	Flavin_Reduct	0.81
PF14023	DUF4239	0.81
PF07931	CPT	0.81
PF01566	Nramp	0.81
PF13466	STAS_2	0.81
PF01322	Cytochrom_C_2	0.81
PF00034	Cytochrom_C	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	6.45
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	3.23
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.42
COG1633	Rubrerythrin, includes spore coat protein YhjR	Inorganic ion transport and metabolism [P]	1.61
COG1814	Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family	Inorganic ion transport and metabolism [P]	1.61
COG1966	Carbon starvation protein CstA (peptide/pyruvate transporter)	Energy production and conversion [C]	1.61
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	0.81
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	0.81
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	0.81
COG3896	Chloramphenicol 3-O-phosphotransferase	Defense mechanisms [V]	0.81
COG3909	Cytochrome c556	Energy production and conversion [C]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.71 %
Unclassified	root	N/A	36.29 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.71 %
Unclassified	root	N/A	36.29 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.71 %
Unclassified	root	N/A	36.29 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	58.87 %
Unclassified	root	N/A	36.29 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	55.65 %
Unclassified	root	N/A	36.29 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	45.16 %
Unclassified	root	N/A	36.29 %
Hyphomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales	0.81 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.29 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	26.61 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	3.23 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.81 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.81 %
Hyphomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae	0.81 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.29 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.03 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	3.23 %
Methylosinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	0.81 %
Hyphomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Hyphomonas	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.81 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.29 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	3.23 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.61 %
unclassified Methylosinus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus	0.81 %
Hyphomonas oceanitis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Hyphomonas → Hyphomonas oceanitis	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.81 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.29 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	3.23 %
Bradyrhizobium sp. BF49	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. BF49	0.81 %
Methylosinus sp. KRF6	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus → Methylosinus sp. KRF6	0.81 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.81 %
Hyphomonas oceanitis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Hyphomonas → Hyphomonas oceanitis	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.81 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.81 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_8970085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1843	Open in IMG/M
2166559005\|cont_contig41379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	950	Open in IMG/M
2166559005\|cont_contig43331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	920	Open in IMG/M
2170459002\|FZY7DQ102G8MXO	Not Available	522	Open in IMG/M
2189573000\|GPBTN7E01DWCRM	Not Available	510	Open in IMG/M
3300000156\|NODE_c0714166	All Organisms → cellular organisms → Bacteria	5059	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100829432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2913	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100829714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4848	Open in IMG/M
3300004009\|Ga0055437_10022595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1487	Open in IMG/M
3300004024\|Ga0055436_10004013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2846	Open in IMG/M
3300005162\|Ga0066814_10110461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	524	Open in IMG/M
3300005162\|Ga0066814_10117210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	513	Open in IMG/M
3300005183\|Ga0068993_10086712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	981	Open in IMG/M
3300005294\|Ga0065705_11069214	Not Available	530	Open in IMG/M
3300005329\|Ga0070683_100248993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1690	Open in IMG/M
3300005332\|Ga0066388_100944992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1434	Open in IMG/M
3300005335\|Ga0070666_10136428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1707	Open in IMG/M
3300005340\|Ga0070689_100068742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2763	Open in IMG/M
3300005366\|Ga0070659_100869216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	787	Open in IMG/M
3300005367\|Ga0070667_102219834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	517	Open in IMG/M
3300005436\|Ga0070713_102119920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomonadales → Hyphomonadaceae → Hyphomonas → Hyphomonas oceanitis	545	Open in IMG/M
3300005439\|Ga0070711_100042763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3065	Open in IMG/M
3300005456\|Ga0070678_100639838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	953	Open in IMG/M
3300005456\|Ga0070678_101520836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	627	Open in IMG/M
3300005713\|Ga0066905_100030341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3055	Open in IMG/M
3300005764\|Ga0066903_107960252	Not Available	544	Open in IMG/M
3300005843\|Ga0068860_101584995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	677	Open in IMG/M
3300005937\|Ga0081455_10127190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1997	Open in IMG/M
3300006041\|Ga0075023_100309097	Not Available	654	Open in IMG/M
3300006041\|Ga0075023_100349939	Not Available	624	Open in IMG/M
3300006047\|Ga0075024_100340918	Not Available	746	Open in IMG/M
3300006057\|Ga0075026_100157426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1169	Open in IMG/M
3300006057\|Ga0075026_100413718	Not Available	761	Open in IMG/M
3300006172\|Ga0075018_10193988	Not Available	960	Open in IMG/M
3300006173\|Ga0070716_100129231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1594	Open in IMG/M
3300006173\|Ga0070716_101716380	Not Available	518	Open in IMG/M
3300006175\|Ga0070712_100268708	Not Available	1369	Open in IMG/M
3300006175\|Ga0070712_101479678	Not Available	593	Open in IMG/M
3300006237\|Ga0097621_100182234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1815	Open in IMG/M
3300006847\|Ga0075431_100090596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3156	Open in IMG/M
3300006854\|Ga0075425_100145069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2718	Open in IMG/M
3300006871\|Ga0075434_100191867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2063	Open in IMG/M
3300007076\|Ga0075435_100027718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4434	Open in IMG/M
3300009011\|Ga0105251_10492871	Not Available	572	Open in IMG/M
3300009148\|Ga0105243_10290211	Not Available	1477	Open in IMG/M
3300009176\|Ga0105242_11181245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	783	Open in IMG/M
3300009176\|Ga0105242_11333659	Not Available	742	Open in IMG/M
3300009551\|Ga0105238_10953499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	878	Open in IMG/M
3300010043\|Ga0126380_10889880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	738	Open in IMG/M
3300010047\|Ga0126382_10678760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	861	Open in IMG/M
3300010047\|Ga0126382_11845684	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300010362\|Ga0126377_10043333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3885	Open in IMG/M
3300010375\|Ga0105239_12916482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	558	Open in IMG/M
3300010401\|Ga0134121_10753657	Not Available	930	Open in IMG/M
3300012483\|Ga0157337_1030855	Not Available	548	Open in IMG/M
3300012984\|Ga0164309_10559113	Not Available	886	Open in IMG/M
3300014308\|Ga0075354_1086050	All Organisms → cellular organisms → Bacteria → Proteobacteria	637	Open in IMG/M
3300014321\|Ga0075353_1020221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1199	Open in IMG/M
3300014324\|Ga0075352_1134984	Not Available	680	Open in IMG/M
3300014745\|Ga0157377_10361470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	977	Open in IMG/M
3300015371\|Ga0132258_10544748	Not Available	2907	Open in IMG/M
3300015371\|Ga0132258_11873594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1510	Open in IMG/M
3300015371\|Ga0132258_11970299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1470	Open in IMG/M
3300015371\|Ga0132258_13860320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1020	Open in IMG/M
3300015372\|Ga0132256_100147712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2354	Open in IMG/M
3300015372\|Ga0132256_100239261	All Organisms → cellular organisms → Bacteria	1879	Open in IMG/M
3300015373\|Ga0132257_104456152	Not Available	510	Open in IMG/M
3300015374\|Ga0132255_101327694	Not Available	1085	Open in IMG/M
3300016319\|Ga0182033_10740701	All Organisms → cellular organisms → Bacteria → Proteobacteria	863	Open in IMG/M
3300016319\|Ga0182033_11475261	Not Available	613	Open in IMG/M
3300016319\|Ga0182033_11894613	Not Available	542	Open in IMG/M
3300016341\|Ga0182035_10307149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus → Methylosinus sp. KRF6	1303	Open in IMG/M
3300016387\|Ga0182040_11316001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	610	Open in IMG/M
3300017939\|Ga0187775_10120638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	903	Open in IMG/M
3300017944\|Ga0187786_10046525	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
3300017947\|Ga0187785_10002291	All Organisms → cellular organisms → Bacteria → Proteobacteria	6302	Open in IMG/M
3300018032\|Ga0187788_10232257	Not Available	725	Open in IMG/M
3300018060\|Ga0187765_10044864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2252	Open in IMG/M
3300018060\|Ga0187765_11102103	Not Available	551	Open in IMG/M
3300018072\|Ga0184635_10004221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4565	Open in IMG/M
3300018081\|Ga0184625_10030746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2627	Open in IMG/M
3300022694\|Ga0222623_10115254	Not Available	1046	Open in IMG/M
3300025560\|Ga0210108_1024367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1109	Open in IMG/M
3300025903\|Ga0207680_10394660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	977	Open in IMG/M
3300025911\|Ga0207654_11423823	Not Available	505	Open in IMG/M
3300025915\|Ga0207693_10215250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1510	Open in IMG/M
3300025915\|Ga0207693_10668764	Not Available	806	Open in IMG/M
3300025916\|Ga0207663_10580602	Not Available	879	Open in IMG/M
3300025936\|Ga0207670_11540141	Not Available	565	Open in IMG/M
3300025939\|Ga0207665_11486981	Not Available	538	Open in IMG/M
3300025945\|Ga0207679_10267448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1461	Open in IMG/M
3300025986\|Ga0207658_11262560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	675	Open in IMG/M
3300026121\|Ga0207683_10079693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2904	Open in IMG/M
3300026350\|Ga0256823_1037473	Not Available	510	Open in IMG/M
3300027873\|Ga0209814_10189173	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300027910\|Ga0209583_10127772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1013	Open in IMG/M
3300027910\|Ga0209583_10366239	Not Available	676	Open in IMG/M
3300030854\|Ga0075385_11628999	Not Available	541	Open in IMG/M
3300030916\|Ga0075386_10031818	Not Available	920	Open in IMG/M
3300030972\|Ga0075400_11791323	Not Available	521	Open in IMG/M
3300031057\|Ga0170834_100856584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. BF49	988	Open in IMG/M
3300031170\|Ga0307498_10450365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	516	Open in IMG/M
3300031184\|Ga0307499_10177902	Not Available	641	Open in IMG/M
3300031226\|Ga0307497_10082947	Not Available	1210	Open in IMG/M
3300031226\|Ga0307497_10413926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	647	Open in IMG/M
3300031231\|Ga0170824_101906912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2109	Open in IMG/M
3300031446\|Ga0170820_14255476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1186	Open in IMG/M
3300031446\|Ga0170820_15336511	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300031538\|Ga0310888_10095740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1499	Open in IMG/M
3300031545\|Ga0318541_10777422	Not Available	534	Open in IMG/M
3300031562\|Ga0310886_10527397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	716	Open in IMG/M
3300031573\|Ga0310915_10235487	Not Available	1287	Open in IMG/M
3300031573\|Ga0310915_10419349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	951	Open in IMG/M
3300031719\|Ga0306917_10757456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	762	Open in IMG/M
3300031744\|Ga0306918_10333016	Not Available	1175	Open in IMG/M
3300031858\|Ga0310892_10162880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1306	Open in IMG/M
3300031910\|Ga0306923_10558827	Not Available	1289	Open in IMG/M
3300031942\|Ga0310916_10969327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	711	Open in IMG/M
3300031947\|Ga0310909_11464524	Not Available	545	Open in IMG/M
3300032001\|Ga0306922_11382611	Not Available	708	Open in IMG/M
3300032012\|Ga0310902_10095617	All Organisms → cellular organisms → Bacteria → Proteobacteria	1576	Open in IMG/M
3300032013\|Ga0310906_10596750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	760	Open in IMG/M
3300032211\|Ga0310896_10021536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2297	Open in IMG/M
3300033433\|Ga0326726_10224151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1743	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.16%
Host-Associated	Host-Associated	27.42%
Engineered	Engineered	2.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.26%
Plants	Host-Associated → Plants	27.42%
Aquatic	Environmental → Aquatic	12.90%
Modeled	Engineered → Modeled	1.61%
Solid Waste	Engineered → Solid Waste	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.68%
Sediment	Environmental → Aquatic → Sediment	8.87%
Marine	Environmental → Aquatic → Marine	3.23%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	1.61%
Freshwater	Environmental → Aquatic → Freshwater	0.81%
Peat	Environmental → Terrestrial → Peat	0.81%
Roots	Host-Associated → Plants → Roots	0.81%
Grass	Engineered → Solid Waste → Grass	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.29%
Loam	Environmental → Terrestrial → Soil → Loam	12.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.87%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.26%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.84%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.23%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.42%
Soil	Host-Associated → Plants → Rhizoplane → Soil	2.42%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	1.61%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.81%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.81%
Composting	Engineered → Solid Waste → Grass → Composting	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.94%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.87%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.45%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.84%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.03%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.23%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	2.42%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	1.61%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.81%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.81%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.81%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.26%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.84%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.84%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.03%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.03%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.23%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.23%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.23%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.42%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	2.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.42%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.42%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.61%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.61%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.61%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.61%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	1.61%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.81%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.81%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.81%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental	Open in IMG/M
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004009	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2	Environmental	Open in IMG/M
3300004024	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005183	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012483	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.yng.040610	Host-Associated	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300014308	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1	Environmental	Open in IMG/M
3300014321	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D1	Environmental	Open in IMG/M
3300014324	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025560	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026350	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PU6	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300030854	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB2 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030972	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB4 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_03523220	2088090015	Soil	MTRNRICHTAKEVEENFPYCVDIVVPPRGLGWRLAAMYDFHARHRISPKRGYGQRGAIRWCFAERTLADAFAEEFVRDQKLSPPIAGS
cont_0379.00002960	2166559005	Simulated	MARSKGRQSAKSVEQDFPHFVEIAVPPNGLGNTLIAMYDFHAKRGIEAKRGHGRRDDGASYIRWCFADPALADAFAKEFDT
cont_0331.00003110	2166559005	Simulated	MVKRTRKTAKEVEEDFPHFVDIAVPPGGLGSKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFSDPALADAFAQEFALPD
E1_09451780	2170459002	Grass Soil	MARSKGRQSAKSVEQDFPHFVEIGVPPNGLGNTLIAMYDFHAKRGIEAKRGHGRRDDGASYIRWCFADPALADAFAKEFDT
N55_06216120	2189573000	Grass Soil	MARSKGRQSAKSVEQDFPHFVEIPVPPNGLGNTLIDMYDFHAKRGIEAKRGHGRRDDGASYIRWCFADPALADAFAKEFD
NODE_071416611	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MIKRNRQIAKEVEQDFPHFVDIAVPPGGLGSRLAAMYDFHARHRISPKRGHGRRDHKGGAIRWCFADPLLAAAFAQEFAP*
INPhiseqgaiiFebDRAFT_1008294325	3300000364	Soil	MNHRTRVTAKEIAEDLSHCVDIAVPPRGLGWRLAAMYDFHARHRISPKRGHGQRGAIRWCFADRALADAFAQEFARDQESSP*
INPhiseqgaiiFebDRAFT_1008297147	3300000364	Soil	MTRNRICHTAKEVEENFPYCVDIVVPPRGLGWRLAAMYDFHARHRISPKRGYGQRGAIRWCFAERTLADAFAEEFVRDQKLSPPIAGS*
Ga0055437_100225954	3300004009	Natural And Restored Wetlands	MSRYKGRQSAKSVEQDFPHFVEIAVPLNGLGNTLIAMYDFHARHGVEAKRGHGRRDDGASFIRWCFADPALAAAFAREFATQP
Ga0055436_100040134	3300004024	Natural And Restored Wetlands	MSRYKGRQSAKSVEQDFPHFVEIAVPLNGLGNTLIAMYDFHARHGVEAKRGHGRRDDGASFIRWCFADPALAAAFAREFATQPA*
Ga0066814_101104613	3300005162	Soil	EEDFPHFVDIAVPPGGLGSKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFSDPALADAFAQEFALPD*
Ga0066814_101172102	3300005162	Soil	AKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFARK*
Ga0068993_100867121	3300005183	Natural And Restored Wetlands	MSRYKGRQSAKSVEQDFPHFVEIAVPLNGLGNTLIAMYDFHARHGVEAKRGHGRRDDGASFIRWCFADPALAA
Ga0065705_110692141	3300005294	Switchgrass Rhizosphere	MTRNRICHTAKETEENFPYCVDIVVPPRGLGWRLAAMYDFHARHRISPKRGYGQRGAIRWCFAERTLADAFAQEFVRDQKLNPPVAGS*
Ga0070683_1002489932	3300005329	Corn Rhizosphere	MVEKTRKIAKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFARE*
Ga0066388_1009449924	3300005332	Tropical Forest Soil	MVESSRKIAKEVEQDFPHFVDIVVPPGGLGSKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFASD*
Ga0070666_101364284	3300005335	Switchgrass Rhizosphere	LLQSAMVEKTRKIAKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFARE*
Ga0070689_1000687426	3300005340	Switchgrass Rhizosphere	MCGFEPSQGLASRSLLESAMVEKTRKIAKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFARE*
Ga0070659_1008692161	3300005366	Corn Rhizosphere	AKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFARE*
Ga0070667_1022198341	3300005367	Switchgrass Rhizosphere	AKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRYDKGGAIRWCFADPQLADAFAQEFARE*
Ga0070713_1021199201	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LAEAHRRTIAKNVEMARSKGRQSAKSVERDFPHFVEIGVPPNGLGNTLIAMYDFHAKRGIEAKRGHGRRDDGASYIRWCFADPALADAF
Ga0070711_1000427636	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MCGFEPSQGLASRSLLESAMVEKTRKIAKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFARK*
Ga0070678_1006398382	3300005456	Miscanthus Rhizosphere	LIHVNDQITFFDQTEYMNRHRTRRTAKEVEQDFPHFVDIAVPPSGLGSKLAAMYDFHARHRISPKRGHGRRDDRGGAIRWCFADPALAEAFALEFVQD*
Ga0070678_1015208361	3300005456	Miscanthus Rhizosphere	MCGFEPSQGLASRSLLESAMVEKTRKIAKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFAHE*
Ga0066905_1000303416	3300005713	Tropical Forest Soil	CHTAKEVEENFPYCVDIVVPPRGLGWRLAAMYDFHARHRISPKRGYGQRGAIRWCFAQRTLADAFAQEFVRDQKLSPPVAGS*
Ga0066903_1079602521	3300005764	Tropical Forest Soil	MVKRTRGTAKEVEQDFPHFVDIAVPPGGLGSRLAAMYDFHARHRISPKRGYGRRDDKGGAIRWCFADPQLADAFAQEFARE*
Ga0068860_1015849952	3300005843	Switchgrass Rhizosphere	MCGFEPSQGLASRSLLESAMVEKTRKIAKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFARD*
Ga0081455_101271901	3300005937	Tabebuia Heterophylla Rhizosphere	MNHRTRVNAKEIEKDFPHCVDIAVPPRGIGWRLAAMYDFHARHRISPKRGHGQRGAIRWCFSDRASADAFAQEFVRD*
Ga0075023_1003090971	3300006041	Watersheds	MSRYKDRQSAKTVEQDFPHFVEIAVPPNGLGNALIAMYAFHARHGIAPKRGHGRHDDGRSVIRWCFADPAVAAAFAKEFDDLT*
Ga0075023_1003499391	3300006041	Watersheds	MARSKGRQSAKSVEQDFPHFVEIGVPPNGLGNTLIAMYDFHAKHGIEAKRGHGRRDDGASYIRWCFADPALADAFAKEFD
Ga0075024_1003409182	3300006047	Watersheds	TNMSRYKDRQSAKSVEQDFPHFVEIAVPPNGLGNTLIAMYAFHARHGIALKRGHGRHDDGRSVIRWCFADPAVAAAFAKEFDDLT*
Ga0075026_1001574262	3300006057	Watersheds	MIVLVRKARMVKRTRQIAKEVEQDFPHFVDIAVPPSGLGSKLAAMYDFHARHRITPKRGHGRRDESGGAIRWCFSDPALANAFAQEFARE*
Ga0075026_1004137183	3300006057	Watersheds	MSRYKDRQSAKSVEQDFPHFVEIAVPPNGLGNTLIAMYAFHARHGIALKRGHGRHDDGRSVIRWCFADPAVAAAFAKEFDDLT*
Ga0075018_101939881	3300006172	Watersheds	LISGRYRCCLQERTNTNMSRYKDRQSAKSVEQDFPHFVEIAVPPNGLGNTLIAMYAFHARHGIALKRGHGRHDDGRSVIRWCFADPAVAAAFAKEFDDLT*
Ga0070716_1001292312	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MCGFEPSQGLASRSLLESAMVEKTRKIAKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFTRE*
Ga0070716_1017163801	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MARSKGRQSVKSVEQEFPHFVQIAVPPNGLGNTLIAMYAFHAKHGIEAKRGHGRHDDGAGYIRWCFADPALADAFAKEFDT*
Ga0070712_1002687082	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MARSKGRQSAKSVEQDFPHFVEIGVPPNGLGNTLIAMYDFHAKRGIEAKRGHGRRDDGASYIRWCFADPALADAFAKEFDT*
Ga0070712_1014796781	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MVEKTRKIAKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFAHE*
Ga0097621_1001822343	3300006237	Miscanthus Rhizosphere	MCGFEPSQGLASRSLLEKRHGRKNRKIAKEVEQDFPHFVDTVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFARE*
Ga0075431_1000905967	3300006847	Populus Rhizosphere	RNRICHTAKEVEENFPYCVDIVVPPRGLGWRLAAMYDFHARHRISPKRGYGQRGAIRWCFAERTLADAFAEEFVRDQKLSPPIAGS*
Ga0075425_1001450693	3300006854	Populus Rhizosphere	MCGFEPSQGLASRLLLQSAMVEKTRKIAKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFAHE*
Ga0075434_1001918674	3300006871	Populus Rhizosphere	MVEKTRKIAEEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFAHE*
Ga0075435_1000277181	3300007076	Populus Rhizosphere	RAPLSHDMCGFEPSQGLASRLLLQSAMVEKTRKIAEEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFAHE*
Ga0105251_104928711	3300009011	Switchgrass Rhizosphere	MVEKTRKIAKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFAD
Ga0105243_102902113	3300009148	Miscanthus Rhizosphere	LIHVNDQITFFDQTEYMNRHRTRRTAKEVEQDFPHFVDIAVPPSGLGSKLAAMYDFHARHRISPKRGHGRRDARGGAIRWCFADLALAEAFALEFVQD*
Ga0105242_111812451	3300009176	Miscanthus Rhizosphere	EQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFARE*
Ga0105242_113336591	3300009176	Miscanthus Rhizosphere	MARSKGRQSAKSVEQDFPHFVEIGVPPNGLGNTLIAMYDFHAKRGIEAKRGHGRRDDGASYIRWCFADPAL
Ga0105238_109534993	3300009551	Corn Rhizosphere	IAKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFARE*
Ga0126380_108898802	3300010043	Tropical Forest Soil	MTAKEIEEDFPHCVDIAVPPRGLGWRLAAMYDFHARHRISPKRGYGQRGAIRWCFAERTLADAFAQEFVRDQKLSPPVAGS*
Ga0126382_106787602	3300010047	Tropical Forest Soil	MTRNRIWHTAKEVEENFPYCVDIVVPPRGLGWRLAAMYDFHARHRISPKRGYGQRGAIRWCFAQRTLADAFAQEFVRGQKLSPPVAGS*
Ga0126382_118456842	3300010047	Tropical Forest Soil	SFRRKDCERNMSHHKGKQQAKSIGRDFPHVVEIAVPPNGLGNALIAMYDFHARHGIEVKRGHGRREHGGNFMRWCFAESAIAAAFASEFKR*
Ga0126377_100433337	3300010362	Tropical Forest Soil	MTRNRICHTAKEVEENFPYCVDIVVPPRGLGWRLAAMYDFHARHRISPKRGYGQRGAIRWCFAQSTLADAFAQEFVRGQKLSPPVAGS*
Ga0105239_129164822	3300010375	Corn Rhizosphere	FPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFARE*
Ga0134121_107536571	3300010401	Terrestrial Soil	MVEKTRKIAKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRYDKGGAIRWCFADPQLADAFAQEFARE*
Ga0157337_10308552	3300012483	Arabidopsis Rhizosphere	MCGFEPSQGLASRLLLQSAMVEKTRKIAKEVEQDFPHFVDIVVPPGGLGSKLAAMYDFHARHRISPKRGH
Ga0164309_105591131	3300012984	Soil	MARSKGRQSAKSVEQDFPHFVEIGVPPNGLGNTLIAMYDFHAKRGIEAKRGHGRHDDGAGYIRWCFADPALADAFAKEFDP*
Ga0075354_10860501	3300014308	Natural And Restored Wetlands	MSRYKGRQSAKSVEQDFPHFVEIAVPPNGLGNTLIAMYDFHAQHGIEAKRGHGRHNDGASFIRWCFADPDLAAAFAREFATQLA*
Ga0075353_10202212	3300014321	Natural And Restored Wetlands	MSRYKGRQSAKSVEQDFPHFVEIAVPLNGLGNTLIAMYDFHARHGIEAKRGHGRRDDGASFIRWCFADPGLAAAFAKEFATQLA*
Ga0075352_11349842	3300014324	Natural And Restored Wetlands	MSRYKGRQSAKSVEQDFPHFVEIAVPPNGLGNTLIAMYDFHARHGIEAKRGHGRHNDGASFIRWCFADPGLAAAFAKEFATQLA*
Ga0157377_103614702	3300014745	Miscanthus Rhizosphere	MVEETRKIAKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFARE*
Ga0132258_105447482	3300015371	Arabidopsis Rhizosphere	LIHVKVEMMVLVRKARMVKKNRQIAKEVEQDFLHFVDIAVPPTGLGSKLAAMYDFHARHRISPKRGHGRRDESGGAIRWCFSDPALADAFAQEFARD*
Ga0132258_118735942	3300015371	Arabidopsis Rhizosphere	MARSKGRQSAKSVEQDFPHFVEIAVPPNGLGNTLIAMYDFHAKRGIEAKRGHGRRDDGASYIRWCFADPASADAFAKEFDT*
Ga0132258_119702993	3300015371	Arabidopsis Rhizosphere	MCGFEPSQGLASRLLLQSAMVEKTRKIAKEIEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFSDPQLADMFAQEFARE*
Ga0132258_138603201	3300015371	Arabidopsis Rhizosphere	MVERARKIAKEVEQDFPHFVDIVVPPGGLGSKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFVRE*
Ga0132256_1001477121	3300015372	Arabidopsis Rhizosphere	NRLKRAPLSHDMCGFEPSQGLASRLLLQSAMVEKTRKIAKEIEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFSDPQLADMFAQEFARE*
Ga0132256_1002392612	3300015372	Arabidopsis Rhizosphere	MVKRNRQTAKEVEQDFPHFVDIAVPPSGLGSKLAAMYDFHARHRISPKRGHGRRDESGGAIRWCFSDPALADAFAQEFARD*
Ga0132257_1044561522	3300015373	Arabidopsis Rhizosphere	LIHVNDRITFFDQTKYMNRYKTRRTAKEVEQDFPHFVDIAVPPSGLGSKLAAMYDFHARHRISPKRGHGRRDDRGGAIRWCFADPALAEAFALEFVQD*
Ga0132255_1013276941	3300015374	Arabidopsis Rhizosphere	MAKGTRQVAKEVEQDFPHFVDIAVPPGGLGSKLAAMYDFHARHRISPKRGHGRRDERGGTIRWCFANSALADAFAQEFARD*
Ga0182033_107407011	3300016319	Soil	MVKRTRQIAKEVEQDFPHFVDIAVPPGGLGSKLAAMYDFHARHRISPKRGHGRRNDKGGAIRWCFSDPLLADAFAQEFAHD
Ga0182033_114752611	3300016319	Soil	MFDLRQRWHLIFGLKEFMNHRTRMTAKEIEEDFPHCVDIAVPPRGLGWRLAAMYDFHTRHRISPKRGHGQRGAIRWCFTDRSLADAFAQEFAREQESSP
Ga0182033_118946131	3300016319	Soil	MVKRTRQIAKEVEQDFPHFVDVVVPPGGLGTKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPLLADA
Ga0182035_103071491	3300016341	Soil	MVKRTRQIAKEVEQDFPHFVDVVVPPGGLGTKLAAMYDFHARHRISPKRGHGRREDKGGAIRWCFAEPLLADAFAQEFAHES
Ga0182040_113160012	3300016387	Soil	EIEEDFPHCVDIAVPPRGLGWRLAAMYDFHTRHRISPKRGHGQRGAIRWCFTDRSLADAFAQEFAREQESSP
Ga0187775_101206382	3300017939	Tropical Peatland	MSRYKGRQGAKSVEQDFPHFVEIAVPPNGLGNTLIAMYDFHARHGIEAKRGHGRRDDGASFIRWCFADPDLAAAFAREFATQPA
Ga0187786_100465252	3300017944	Tropical Peatland	MVKRSRGTAKEIEQDFPHFVDIAVPPGGLGSKLTAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADAQLADAFAREFVRK
Ga0187785_100022912	3300017947	Tropical Peatland	MVKRSRGTAKEIEQDFPHFVDIAVPPGGLGSKLTAMYDFHVRHRISPKRGHGRRDDKGGAIRWCFADPLLADAFAQEFARE
Ga0187788_102322571	3300018032	Tropical Peatland	MARSKGRQSAKSVEKDFPHFVEIVVPPNGLGSMLIAMYDFHTKHGIEAKRGHGRRDDGASYIRWCFADPALADAFAKQFNT
Ga0187765_100448643	3300018060	Tropical Peatland	MVKSTRRTAKEVEQDFPHFVDIAVPPGGLGSKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFARE
Ga0187765_111021032	3300018060	Tropical Peatland	MVKGTRQVAKEVEQDFPHFVDITVPPGGLGSKLAAMYDFHARHRISPKRGHGRRDERGSAIRWCFADPALADAFAQEFARE
Ga0184635_100042217	3300018072	Groundwater Sediment	MNNRTRLTAKEIEEDFRHCVDIAVPPRGLGWRLAAMFDFHARHRISPKRGHGQRGAIRWCFADRALADAFAQEFARDQKSRP
Ga0184625_100307465	3300018081	Groundwater Sediment	MNNRTRLTAKEIEEDFRHCVDIAVPPRGLGWRLAAMFDFHARHRISPKRGHGQRGAIRWCFADRALADAFAQEFARDQKSSP
Ga0222623_101152541	3300022694	Groundwater Sediment	SRDKGKRQAQSIERGFPHVVEIAVPPNGLGSVLIAMYEFHARHGIEAKRGHGRREYGGNFIRWCFADPVLAGAFANEFGAANPLK
Ga0210108_10243672	3300025560	Natural And Restored Wetlands	MSRYKGRQSAKSVEQDFPHFVEIAVPLNGLGNTLIAMYDFHARHGVEAKRGHGRRDDGASFIRWCFADPALAAAFAREFATQPA
Ga0207680_103946602	3300025903	Switchgrass Rhizosphere	LLESAMVEKTRKIAKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFARE
Ga0207654_114238231	3300025911	Corn Rhizosphere	NDQITFFDQTEYMNRHRTRRTAKEVEQDFPHFVDIAVPPSGLGSKLAAMYDFHARHRISPKRGHGRRDDRGGAIRWCFADPALAEAFALEFVQD
Ga0207693_102152505	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	KEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFAGPQLADAFAQEFARE
Ga0207693_106687641	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MARSKGRQSAKSVEQDFPHFVEIGVPPNGLGNTLIAMYDFHAKRGIEAKRGHGRRDDGASYIRWCFADPALADTFAKEFDT
Ga0207663_105806022	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	RQTNAKNLEMARSKGRQSVKSVEQEFPHFVQIAVPPNGLGNTLIAMYAFHAKHGIEAKRGHGRHDDGAGYIRWCFADPALADALAKEFDP
Ga0207670_115401411	3300025936	Switchgrass Rhizosphere	MCGFEPSQGLASRSLLESAMVEKTRKIAKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLAD
Ga0207665_114869812	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MCGFEPSQGLASRSLLESAMVEKTRKIAKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADP
Ga0207679_102674483	3300025945	Corn Rhizosphere	NKEENRLERILHSHDMCGFEPSQGLASRSLLESAMVEKTRKIAKEVEQDFPHFVDIVVPPGGHGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFARE
Ga0207658_112625602	3300025986	Switchgrass Rhizosphere	MVEKTRKIAKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRYDKGGAIRWCFADPQLADAFAQEFARE
Ga0207683_100796935	3300026121	Miscanthus Rhizosphere	MNRHRTRRTAKEVEQDFPHFVDIAVPPSGLGSKLAAMYDFHARHRISPKRGHGRRDDRGGAIRWCFADPALAEAFALEFVQD
Ga0256823_10374731	3300026350	Sediment	VSRYKGRQSAKSVEQDFPHFVEIAVPPNGLGNTLIAMYDFHARHGIEAKRGHGRHNDGASFIRWCFADPDLAAAFAREFATQLA
Ga0209814_101891731	3300027873	Populus Rhizosphere	MNHRTRVTAKEIAEDLSHCVDIAVPPRGLGWRLAAMYDFHARHRISPKRGHGQRGAIRWCFADRALADAFAQEFARDQE
Ga0209583_101277722	3300027910	Watersheds	EMIVLVRKARMVKRTRQIAKEVEQDFPHFVDIAVPPSGLGSKLAAMYDFHARHRITPKRGHGRRDESGGAIRWCFSDPALANAFAQEFARE
Ga0209583_103662391	3300027910	Watersheds	MSRYKDRQSAKTVEQDFPHFVEIAVPPNGLGNALIAMYAFHARHGIALKRGHGRHDDGRSVIRWCFADPAVAAAFAKEFDDLT
Ga0075385_116289991	3300030854	Soil	MKDLRTLRAELKQLPAEIGSHRQTIAKNVEMARSKGRQSAKSVEQDFPHFVEIAVPPNGLGNTLIAMYDFHAKHAIEAKRGHGRRDDGASYIRWCFADPALADAFAKEFDT
Ga0075386_100318181	3300030916	Soil	MARSKGRQSAKSVEQDFPHFVEIAVPPNGLGNTLIAMYDFHAKRGIEAKRGHGRRDDGAGYIRWCFADPASADAFAKEFDT
Ga0075400_117913232	3300030972	Soil	MARSKGRQSAKSVEQDFPHFVEIAVPPNGLGNTLIAMYDFHAKHGIEAKRGHGRRDDGASYIRWCFADPALADAFTKEFDT
Ga0170834_1008565841	3300031057	Forest Soil	GSHRQTIAKNVEMARSKGRQSAKSVEQDFPHFVEIAVPPNGLGNTLIAMYDFHAKHAIEAKRGHGRRDDGASYIRWCFADPALADAFANEFDT
Ga0307498_104503651	3300031170	Soil	MVKRTRKTAKEVEEDFPHFVDIAVPPGGLGSKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFSDPALADAFPQEFALPD
Ga0307499_101779021	3300031184	Soil	MARSKGRQSAKSVEHDFPHFVEIAVPPNGLGNTLIAMYDFHAKRGIEAKRGHGRRDDGASYIRWCFADPALADAFAKEFDT
Ga0307497_100829471	3300031226	Soil	EKNVEMARSKGRQSAKSVEQDFPHFVEIAVPPNGLGNTLIAMYDFHAKHAIEAKRGHGRRDDGAGYIRWCFADPALADAFAKEFDT
Ga0307497_104139261	3300031226	Soil	QSAMVEKTRKIAKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFAHE
Ga0170824_1019069121	3300031231	Forest Soil	PHRQTIAKNVEMARSKGRQSAKSVEQDFPHFVEIAVPPNGLGNTLIAMYDFHAKRGIEAKRGHGRRDDGASYIRWCFADPALADAFAKEFDT
Ga0170820_142554762	3300031446	Forest Soil	VVLVRKARMVKRTRKIAKEVEEDFPHFVDIAVPPGGLGSKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFSDTALADAFAQEFAMPD
Ga0170820_153365112	3300031446	Forest Soil	KSVEQDFPHFVEIAVPPNGLGNTLIAMYDFHAKHSIEAKRGHGRRDDGASYIRWCFADPALADAFAKEFDT
Ga0310888_100957402	3300031538	Soil	MCGFEPSQGLASRLLLQSAMVEKTRKIAKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFAHE
Ga0318541_107774221	3300031545	Soil	MVKRTRQIAKEVEQDFPHFVDVVVPPGGLGTKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPLLADAFAQEFAHDS
Ga0310886_105273972	3300031562	Soil	MVEKTRKIAKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFAHE
Ga0310915_102354873	3300031573	Soil	MSRYTERKNAKGVEQDYPHFVEVVVPPGGLGSKLNAMYDFHARHGIAAKRGHGVRGGDGGSVIRWCFADPSVAVAFEKEFAPK
Ga0310915_104193491	3300031573	Soil	MTAKEIEEDFPHCVDIAVPPRGLGWRLAAMYDFHTRHRISPKRGHGQRGAIRWCFTDRSLADAFAQEFAREQESSP
Ga0306917_107574562	3300031719	Soil	MVKRTRQIAKEVEQDFPHFVDVVVPPGGLGTKLAAMYDFHARHRISPKRGHGRREDKGGDIRWCFADPLLADAFAQEFAHDS
Ga0306918_103330162	3300031744	Soil	MVKRTRQIAKEVEQDFPHFVDVVVPPGGLGTKLAAMYDFHARHRISPKRGHGRREDKGGAIRWCFADPLLADAFAQEFAHDS
Ga0310892_101628801	3300031858	Soil	KEENRLKRAPLSHDMCGFEPSQGLASRLLLQSAMVEKTRKIAEEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFAHE
Ga0306923_105588272	3300031910	Soil	LRNVKWRPRAQCYRRVMSRYTERKNAKGVEQDYPHFVEVVVPPGGLGSKLNAMYDFHARHGIAAKRGHGVRGGDGGSVIRWCFADPSVAVAFEKEFAPK
Ga0310916_109693271	3300031942	Soil	MVKRTRQIAKEVEQDFPHFVDVVVPPGGLGTKLAAMYDFHARHRISPKRGHGRRNDKGGAIRWCFSDPLLADAFAQEFAHD
Ga0310909_114645241	3300031947	Soil	MVKRTRQIAKEVEQDFPHFVDVVVPPGGLGTKLAAMYDFHARHRISPKRGHGRREDKGGAIRWCFADP
Ga0306922_113826111	3300032001	Soil	QCYRRVMSRYTERKNAKGVEQDYPHFVEVVVPPGGLGSKLNAMYDFHARHGIAAKRGHGVRGGDGGSVIRWCFADPSVAVAFEKEFAPK
Ga0310902_100956174	3300032012	Soil	MVEKTRKIAKEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQL
Ga0310906_105967502	3300032013	Soil	MVEKTRKIAEEVEQDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFAHE
Ga0310896_100215364	3300032211	Soil	QDFPHFVDIVVPPGGLGAKLAAMYDFHARHRISPKRGHGRRDDKGGAIRWCFADPQLADAFAQEFAHE
Ga0326726_102241514	3300033433	Peat Soil	MSRYKGRQSAKSVEQDFPHFVEIAVPPNGLGNTLIAMYDFHARHGIEAKRGHGRRDDGASFIRWCFADPALAAAFAKDFGV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069293

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences