 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F069220 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 124 |
| Average Sequence Length | 48 residues |
| Representative Sequence | MSDAFNERLRLIRFRRKRERSTFREELRVIPKWLVWLCVVLYV |
| Number of Associated Samples | 101 |
| Number of Associated Scaffolds | 124 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 99.19 % |
| % of genes near scaffold ends (potentially truncated) | 98.39 % |
| % of genes from short scaffolds (< 2000 bps) | 88.71 % |
| Associated GOLD sequencing projects | 99 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.28 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (69.355 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (31.452 % of family members) |
| Environment Ontology (ENVO) | Unclassified (27.419 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (56.452 % of family members) |
| ⦗Top⦘ |
| ⦗Top⦘ |
| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 45.07% β-sheet: 0.00% Coil/Unstructured: 54.93% | Feature Viewer |
|
|
|||||
| Powered by Feature Viewer | |||||
| Structure Viewer | |
|---|---|
|
| |
| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.28 |
| Powered by PDBe Molstar | |
| ⦗Top⦘ |
| Pfam ID | Name | % Frequency in 124 Family Scaffolds |
|---|---|---|
| PF08281 | Sigma70_r4_2 | 42.74 |
| PF13490 | zf-HC2 | 4.03 |
| PF02897 | Peptidase_S9_N | 3.23 |
| PF13601 | HTH_34 | 1.61 |
| PF02737 | 3HCDH_N | 0.81 |
| PF00916 | Sulfate_transp | 0.81 |
| COG ID | Name | Functional Category | % Frequency in 124 Family Scaffolds |
|---|---|---|---|
| COG1505 | Prolyl endopeptidase PreP, S9A serine peptidase family | Amino acid transport and metabolism [E] | 3.23 |
| COG1770 | Protease II | Amino acid transport and metabolism [E] | 3.23 |
| COG0240 | Glycerol-3-phosphate dehydrogenase | Energy production and conversion [C] | 0.81 |
| COG0287 | Prephenate dehydrogenase | Amino acid transport and metabolism [E] | 0.81 |
| COG0659 | Sulfate permease or related transporter, MFS superfamily | Inorganic ion transport and metabolism [P] | 0.81 |
| COG0677 | UDP-N-acetyl-D-mannosaminuronate dehydrogenase | Cell wall/membrane/envelope biogenesis [M] | 0.81 |
| COG1004 | UDP-glucose 6-dehydrogenase | Cell wall/membrane/envelope biogenesis [M] | 0.81 |
| COG1250 | 3-hydroxyacyl-CoA dehydrogenase | Lipid transport and metabolism [I] | 0.81 |
| COG1748 | Saccharopine dehydrogenase, NADP-dependent | Amino acid transport and metabolism [E] | 0.81 |
| COG2084 | 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase | Lipid transport and metabolism [I] | 0.81 |
| COG2233 | Xanthine/uracil permease | Nucleotide transport and metabolism [F] | 0.81 |
| COG2252 | Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family | Nucleotide transport and metabolism [F] | 0.81 |
| ⦗Top⦘ |
| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 69.35 % |
| All Organisms | root | All Organisms | 30.65 % |
| Visualization |
|---|
| Powered by ApexCharts |
| ⦗Top⦘ |
| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 31.45% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 11.29% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 10.48% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 8.06% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 5.65% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 4.84% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 4.03% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 3.23% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 2.42% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 2.42% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 1.61% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 1.61% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 1.61% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 1.61% |
| Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 1.61% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 1.61% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 0.81% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.81% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 0.81% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 0.81% |
| Prmafrost Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil | 0.81% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 0.81% |
| Fen | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen | 0.81% |
| Boreal Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil | 0.81% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2088090014 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
| 3300003219 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 | Environmental | Open in IMG/M |
| 3300004080 | Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
| 3300004091 | Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004152 | Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3 | Environmental | Open in IMG/M |
| 3300005162 | Soil and rhizosphere microbial communities from Laval, Canada - mgLAB | Environmental | Open in IMG/M |
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005993 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 | Environmental | Open in IMG/M |
| 3300006162 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 | Environmental | Open in IMG/M |
| 3300006173 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG | Environmental | Open in IMG/M |
| 3300007258 | Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 | Environmental | Open in IMG/M |
| 3300009522 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG | Environmental | Open in IMG/M |
| 3300009839 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG | Environmental | Open in IMG/M |
| 3300010339 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3 | Environmental | Open in IMG/M |
| 3300010343 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1 | Environmental | Open in IMG/M |
| 3300010362 | Tropical forest soil microbial communities from Panama - MetaG Plot_22 | Environmental | Open in IMG/M |
| 3300010376 | Tropical forest soil microbial communities from Panama - MetaG Plot_28 | Environmental | Open in IMG/M |
| 3300010858 | Boreal forest soil eukaryotic communities from Alaska, USA - C3-2 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300012363 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG | Environmental | Open in IMG/M |
| 3300012924 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012930 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300014158 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG | Environmental | Open in IMG/M |
| 3300015054 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300016294 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 | Environmental | Open in IMG/M |
| 3300016319 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H | Environmental | Open in IMG/M |
| 3300016404 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 | Environmental | Open in IMG/M |
| 3300016422 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 | Environmental | Open in IMG/M |
| 3300016445 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 | Environmental | Open in IMG/M |
| 3300016750 | Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300017939 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG | Environmental | Open in IMG/M |
| 3300017943 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4 | Environmental | Open in IMG/M |
| 3300017955 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2 | Environmental | Open in IMG/M |
| 3300017959 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG | Environmental | Open in IMG/M |
| 3300017972 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300017974 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG | Environmental | Open in IMG/M |
| 3300017999 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG | Environmental | Open in IMG/M |
| 3300018058 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG | Environmental | Open in IMG/M |
| 3300018060 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG | Environmental | Open in IMG/M |
| 3300018062 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300018085 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300018090 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300020199 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300020580 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M | Environmental | Open in IMG/M |
| 3300020581 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M | Environmental | Open in IMG/M |
| 3300020582 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O | Environmental | Open in IMG/M |
| 3300020583 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M | Environmental | Open in IMG/M |
| 3300021168 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M | Environmental | Open in IMG/M |
| 3300021171 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M | Environmental | Open in IMG/M |
| 3300021178 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M | Environmental | Open in IMG/M |
| 3300021407 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O | Environmental | Open in IMG/M |
| 3300021474 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O | Environmental | Open in IMG/M |
| 3300021559 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M | Environmental | Open in IMG/M |
| 3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026467 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A | Environmental | Open in IMG/M |
| 3300026833 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 54 (SPAdes) | Environmental | Open in IMG/M |
| 3300026890 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 51 (SPAdes) | Environmental | Open in IMG/M |
| 3300026959 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027045 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 40 (SPAdes) | Environmental | Open in IMG/M |
| 3300027095 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF020 (SPAdes) | Environmental | Open in IMG/M |
| 3300027313 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 45 (SPAdes) | Environmental | Open in IMG/M |
| 3300027565 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027575 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027879 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes) | Environmental | Open in IMG/M |
| 3300027910 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes) | Environmental | Open in IMG/M |
| 3300031446 | Fir Summer Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031543 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20 | Environmental | Open in IMG/M |
| 3300031546 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23 | Environmental | Open in IMG/M |
| 3300031668 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23 | Environmental | Open in IMG/M |
| 3300031681 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20 | Environmental | Open in IMG/M |
| 3300031682 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22 | Environmental | Open in IMG/M |
| 3300031719 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2) | Environmental | Open in IMG/M |
| 3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
| 3300031726 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1 | Environmental | Open in IMG/M |
| 3300031744 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2) | Environmental | Open in IMG/M |
| 3300031751 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24 | Environmental | Open in IMG/M |
| 3300031771 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19 | Environmental | Open in IMG/M |
| 3300031819 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21 | Environmental | Open in IMG/M |
| 3300031833 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178 | Environmental | Open in IMG/M |
| 3300031879 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2) | Environmental | Open in IMG/M |
| 3300031890 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2) | Environmental | Open in IMG/M |
| 3300031910 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2) | Environmental | Open in IMG/M |
| 3300031912 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2) | Environmental | Open in IMG/M |
| 3300031941 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080 | Environmental | Open in IMG/M |
| 3300031946 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172 | Environmental | Open in IMG/M |
| 3300031947 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H | Environmental | Open in IMG/M |
| 3300032035 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170 | Environmental | Open in IMG/M |
| 3300032044 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20 | Environmental | Open in IMG/M |
| 3300032055 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23 | Environmental | Open in IMG/M |
| 3300032059 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27 | Environmental | Open in IMG/M |
| 3300032066 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18 | Environmental | Open in IMG/M |
| 3300032091 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25 | Environmental | Open in IMG/M |
| 3300032174 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05 | Environmental | Open in IMG/M |
| 3300032205 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 | Environmental | Open in IMG/M |
| 3300032782 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1 | Environmental | Open in IMG/M |
| 3300032783 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3 | Environmental | Open in IMG/M |
| 3300032805 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 | Environmental | Open in IMG/M |
| 3300032828 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4 | Environmental | Open in IMG/M |
| 3300032829 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3 | Environmental | Open in IMG/M |
| 3300032955 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5 | Environmental | Open in IMG/M |
| 3300033004 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4 | Environmental | Open in IMG/M |
| 3300033158 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| GPIPI_00638100 | 2088090014 | Soil | MSDAFSERMRLIRFRRKTERPRFRDELKVIPRWLIWTCAALYSV |
| JGI26341J46601_100879453 | 3300003219 | Bog Forest Soil | MSDAFNERLRLIRFRRKRERSKFTDELRIIPRWLVFTCLVLTMIALIVGVSIN |
| Ga0062385_106094321 | 3300004080 | Bog Forest Soil | MSDAFNERLRLIRFRRKRERSKFADELRIIPRWLVFTCLVLTMIAMIVGVSIN |
| Ga0062387_1003151561 | 3300004091 | Bog Forest Soil | MSDAFNERLRLIRFRRKRERSRFRDELRIIPKWLVGVCILLYVIALVIGLGVNLY |
| Ga0062386_1000337445 | 3300004152 | Bog Forest Soil | MSDAWNSRLRLIRFRRKRERSTVREELRIIPKWLVWTCVVLY |
| Ga0062386_1013753362 | 3300004152 | Bog Forest Soil | MSDAWNSRLRLIRFRRKRERSTFREELRIIPKWLVWTCVVLY |
| Ga0066814_100752161 | 3300005162 | Soil | MSDAFNERLRLIRFRRKREKSKFTQELRIVPRWLVFACITVWILALIIGLSV |
| Ga0066388_1017009783 | 3300005332 | Tropical Forest Soil | MSESFNERLRLIRFRRKRERSTFREELRIIPKWLVWLCIALYIVGLI |
| Ga0080027_100812151 | 3300005993 | Prmafrost Soil | MTDAFNERLRLIRFRRKREHSKFTQELRMIPRWLM |
| Ga0075030_1010266322 | 3300006162 | Watersheds | MSDMWNERMRLIRFRRKRERTRFRDELRIIPKWLVWTCIVLSVLA |
| Ga0070716_1014851472 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | MSDAFSERMRLIRLRRKIEKPRFRDELKLVPKWLVW |
| Ga0099793_105007952 | 3300007258 | Vadose Zone Soil | MSDAWNQRLRMIRFRRKRERSTFREELRILPKWLVWTCVGLYILALIIG |
| Ga0116218_12218703 | 3300009522 | Peatlands Soil | MSDAFNERLRLIRFRRKRERSRFRDELRIIPKWLVWTCFFLYVIALIIGMAVNIH |
| Ga0116223_108120561 | 3300009839 | Peatlands Soil | MWNERMRLIRFRRKRERTRFRDELRIIPKWLVWTCIVLSVLAVIIGIAINLHNFGTHDPI |
| Ga0074046_109174122 | 3300010339 | Bog Forest Soil | MSDAFNERLRLIRFRRKREHSKFRDELRIIPRWLVWGCVFVWL |
| Ga0074044_102176641 | 3300010343 | Bog Forest Soil | MSDAFNERLRLIRFRRKRERSRFRDELRIIPKWLVGVCILLYVIALVIGLGVNLYGFANNGPVFPGDD |
| Ga0126377_135784272 | 3300010362 | Tropical Forest Soil | MSDAWNERLRLIRFRRKRERSTFREELRILPKWLVW |
| Ga0126381_1035513711 | 3300010376 | Tropical Forest Soil | MGSIWQERLRLIRIRRKREHSTFREELRLIPKWLVWT |
| Ga0126345_10438691 | 3300010858 | Boreal Forest Soil | MSDAFTERLRLIRFRRKREHSRFRDELRIIPKWLVVLCLLLYILALIIGFS |
| Ga0137390_112093712 | 3300012363 | Vadose Zone Soil | MSDAFTERLRLIRFRRKREHSSFRDELRIIPKWLVVMCLL |
| Ga0137413_100482024 | 3300012924 | Vadose Zone Soil | MSDAWNQRLRLIRFRRKRERSTFREELRILPKWLVWTCVGLYIL |
| Ga0137407_101494574 | 3300012930 | Vadose Zone Soil | MSDAFSERMRLIRLRRKIEKPRFRDELKLIPKWLVWTLAFLYVV |
| Ga0137407_107751131 | 3300012930 | Vadose Zone Soil | MSDAFSERMRLIRLRRKIEKPRFRDELKLIPKWLVWT |
| Ga0181521_103318953 | 3300014158 | Bog | MSDMWNERMRLIRFRRKHERTRFREELRIIPKWLVWTC |
| Ga0137420_12421471 | 3300015054 | Vadose Zone Soil | MSDAWNQRLRMIRFRRKRERSTFREELRILPKWLVW |
| Ga0182041_100329414 | 3300016294 | Soil | MSDALNERLRLIRFRRKRERSTFREELRIIPKWLI |
| Ga0182033_106038823 | 3300016319 | Soil | MSESFNERLRLIRFRRKRERSTFREELRIIPKWLVWLCVALYIVGLIIGLAV |
| Ga0182033_107662683 | 3300016319 | Soil | MSESFNERLRLIRFRRKRERSTFREELRVVPKWIFWTCLILCVLGLAIGL |
| Ga0182037_100631755 | 3300016404 | Soil | MSDSFNERLRLIRFRRKRERSTFRQELRIIPKWLVWLCIALYIVGLIVGLAI |
| Ga0182039_101485435 | 3300016422 | Soil | MSESFNERLRLIRFRRKRERSTFREELRVVPKWIFW |
| Ga0182039_101495994 | 3300016422 | Soil | MSDSFNERLRLIRFRRKRERSTFREELRIIPKWLVWLCIALYIVALI |
| Ga0182038_115237341 | 3300016445 | Soil | MSESFNERLRLIRFRRKRERSTFREELRVVPKWIFWTC |
| Ga0181505_103563451 | 3300016750 | Peatland | MSDAFNERLRLIRFRRKRERSRFRDELRIIPKWLVWTCFFLYVIALIIGMAVNIHG |
| Ga0181505_109995251 | 3300016750 | Peatland | MSEALNERLRLIRFRRKRERTRFRDELRIIPKWLVWTCITLYGLALIIG |
| Ga0187775_100695971 | 3300017939 | Tropical Peatland | MPDAFNERLRLIRFRRKRERTRFRDELRIIPKWLVWTCLILYILALVIGIGVNLGNRQFGEPMFPG |
| Ga0187819_100601354 | 3300017943 | Freshwater Sediment | MSDAFNERLRLIRFRRKRERSRFRDELRIIPKWLVWTCASLYIVALIGGIGINL |
| Ga0187817_101278411 | 3300017955 | Freshwater Sediment | MSDMWNERMRLIRFRRKREHTRFRDELRIIPKWLVWTCIVLYVLALIVGLSVNLHNFGTHDPI |
| Ga0187817_106143361 | 3300017955 | Freshwater Sediment | MSDAFNERLRLIRFRRKRERTRFRDELRIIPKWLVWT |
| Ga0187779_103800251 | 3300017959 | Tropical Peatland | MSDTFNERLRLIRFRRKRERSTFRNELRIIPKWLVWTCMVLYVVALIVGIS |
| Ga0187779_105316792 | 3300017959 | Tropical Peatland | MSDAFSERLRLIRFRRKHERAKFTQELRVIPKWLVWTCIALYALALMIGITVNLHNFHTGDT |
| Ga0187781_108153292 | 3300017972 | Tropical Peatland | MSDAFNERLRLIRFRRKRERSTFREELRIIPKWLVWTCVVLYILALIIGMAV |
| Ga0187777_101638331 | 3300017974 | Tropical Peatland | MSDAFNERLRLIRFRQKRERAKFREELRVIPRWLVRTCVVLYVLAVVIGLGVNIHNF |
| Ga0187777_105022161 | 3300017974 | Tropical Peatland | MSDTFNERLRLIRFRRKRERSTFRNELRIIPKWLVWTCMVLYVVALIVGISINLHNF |
| Ga0187767_102990211 | 3300017999 | Tropical Peatland | MSDAFNERLRLIRFRRKRERAKFSEELRVIPKWLVWTCAVLYLLALVIG |
| Ga0187766_101665873 | 3300018058 | Tropical Peatland | MSDAWNERLRLIRFRRKREHSTLREELRILPKWLVWTCVGLTILALVIGVAVN |
| Ga0187766_103406553 | 3300018058 | Tropical Peatland | MSDAFNERLRLIRFRRKRERSTFRNELRIIPRWLVWTCIVLYIAALV |
| Ga0187766_112220641 | 3300018058 | Tropical Peatland | MSDAFSERLRLIRFRRKHERAKFTQELRVIPKWLVWTCIALYALAL |
| Ga0187765_104439003 | 3300018060 | Tropical Peatland | MSDALNERLRLIRFRRKRERAKFREELRVIPKWLVWTCSVLYLLALVIGV |
| Ga0187784_100432561 | 3300018062 | Tropical Peatland | MSDAWNQRLRLIRFRRKRERFTLREELSIIPTWLVWTCNVLYVLALIIGVS |
| Ga0187772_103020271 | 3300018085 | Tropical Peatland | MSDAFNERLRLIRFRRKREQSRFRDELRIIPKWLVWLSVVLYILALVIGIA |
| Ga0187770_106363231 | 3300018090 | Tropical Peatland | MSDAFNERLRLIRFRRKRERSRFRDELRIIPKWLVW |
| Ga0179592_104893011 | 3300020199 | Vadose Zone Soil | MSDAWNQRLRLIRFRRKRERSTFREELRIIPKWLVWTCV |
| Ga0210403_103204533 | 3300020580 | Soil | MSDAFTERLRLIRFRRKREHTSFRDELRIIPKWLVVMCLLLYILA |
| Ga0210403_109363471 | 3300020580 | Soil | MSDSFNQRLRMIRFRRKKERTRFRDELRIIPRWLIWTCLVLYV |
| Ga0210399_103444011 | 3300020581 | Soil | MSDAFTERLRLIRFRRKREHSSFRDELRIIPKWLVVLCLLLYI |
| Ga0210399_110955252 | 3300020581 | Soil | MSDAFTERLRLIRFRRKREHSRFRDELRIIPKWLVVMCLLLYILALIIGFSVNHNG |
| Ga0210395_106132561 | 3300020582 | Soil | MSDAFTERLRLIRFRRKREHSSFRDELRIIPKWLIVMCLL |
| Ga0210401_100181319 | 3300020583 | Soil | MSDAWNQRLRLIRFRRKRERSTFREELHILPKWLVWMCVGLYILALITGLTVN |
| Ga0210406_102367381 | 3300021168 | Soil | MSDAFTERLRLIRFRRKRERSRFRDELRIIPKWLVVICLLLYILALIIGFSVNHYGFQTG |
| Ga0210406_103041131 | 3300021168 | Soil | MPDAFTERLRLIRFRRKREHSRFRDELRIIPKWLVVLCLLLYFLALIIGFS |
| Ga0210406_107151533 | 3300021168 | Soil | MSDAFTERLRLIRFRRKREHSSFRDELRIIPKWLV |
| Ga0210405_103188263 | 3300021171 | Soil | MSDAFTERLRLIRFRRKREHSSFRDELRIIPKWLVVLCLLLYILALIIGFSVNHYGFQTNGP |
| Ga0210405_106224401 | 3300021171 | Soil | MSDAWNQRLRLIRFRRKRERSTFREELRILPKWLVWM |
| Ga0210405_110615221 | 3300021171 | Soil | MSDAFTERLRLIRFRRKREHSSFRDELRIIPKWLVVLCLLLYILALIIGFSV |
| Ga0210408_102603753 | 3300021178 | Soil | MSDAFTERLRLIRFRRKREHSRFRDELRIIPQWLVVLCLLLY |
| Ga0210383_116645262 | 3300021407 | Soil | MSDSFNERMRLIRFRRRRERTRFRDELRIIPRWLIR |
| Ga0210390_100200051 | 3300021474 | Soil | MTDTFNERLRLIRIRRKRESTRFRDELRIIPRWLVWTCLALYIIA |
| Ga0210390_104490513 | 3300021474 | Soil | MSDAWNQRLRLIRFRRKRERSTFREELSILPKWLVWTCVGLYILALIIGTGVNLHNMNTSDPIF |
| Ga0210409_105047373 | 3300021559 | Soil | MPDAFTERLRLIRFRRKREHSRFRDELRIVPKWLVVLCLLLY |
| Ga0207646_102699141 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | MSDAFSERMRLIRLRRKIEKPRFRDELKLIPKWLVWTLA |
| Ga0257154_10738402 | 3300026467 | Soil | MSDAFTERLRLIRFRRKREHSRFRDELRIIPKWLVVLCFLLYILALIIGFSVNHNGFQTNGPI |
| Ga0207728_1122401 | 3300026833 | Tropical Forest Soil | MSDALSEKLRLIRFRRKRERAKFREELRVIPKWLVWTCVVLY |
| Ga0207781_10318651 | 3300026890 | Tropical Forest Soil | MSDALSEKLRLIRFRRKRETSRFRDELRIIPRWLVGTCVALWVLALIIGMGVNVYGIRTGGDMFP |
| Ga0207852_10356092 | 3300026959 | Tropical Forest Soil | MSDAFNERLRLIRFRRKRERSRFTQELKIIPKWLIWTCIVLWVLALI |
| Ga0207726_10518201 | 3300027045 | Tropical Forest Soil | MSDAFNERLRLIRFRRRREHSKFTQELRIIPKWLVWTCVTLYIIALIIGSLV |
| Ga0208606_1054711 | 3300027095 | Forest Soil | MSDAFTERLRLIRFRRKREHSSFRDELRIIPKWLVVICLLLYI |
| Ga0207780_10038781 | 3300027313 | Tropical Forest Soil | MSDALSEKLRLIRFRRKRETSRFRDELRIIPRWLVGTCVALWVLALIIGMGVNVYGIRTG |
| Ga0209219_10737091 | 3300027565 | Forest Soil | MSDAFTERLRLIRFRRKREHSSFRDELRIIPKWLVVMCLLLYILALIIGFSVNHNGFQTGGP |
| Ga0209525_10849961 | 3300027575 | Forest Soil | MSDAWNQRLRLIRFRRKRERSTFREELRILPKRLVWLCVGLYLLALIIGISVNLTNMQTGDDI |
| Ga0209169_104007112 | 3300027879 | Soil | MSDAWNQRLRLIRFRRKRERSTFREELRILPKWLVWMCVG |
| Ga0209583_106732401 | 3300027910 | Watersheds | MSDSFNQRLRMIRFRRKKERTRFRDELRVIPRWLIWTCVPLYIVAL |
| Ga0170820_118344451 | 3300031446 | Forest Soil | MSDSFNERIRLIRFRRKRERTRFRDELRIIPRWLIRTCVALWL |
| Ga0318516_105862552 | 3300031543 | Soil | MSDALDERLRLIRFRRKRERSTFREELRIIPKWLI |
| Ga0318538_101682513 | 3300031546 | Soil | MSESLNERLRLIRFRRKRERSTFREELRIIPKWLVWLCIALYIVGL |
| Ga0318542_102128583 | 3300031668 | Soil | MSESFNERLRLIRFRRKRERSTFREELRVVPKWIFWTCLVLCV |
| Ga0318572_102434803 | 3300031681 | Soil | MSESFNERLRLIRFRRKRERSTFREELRVVPKWIFWTCLILCVLGLA |
| Ga0318560_104850072 | 3300031682 | Soil | MSESFNERLRLIRFRRKRERSTFREELRVVPKWIFWTCLIL |
| Ga0306917_111074602 | 3300031719 | Soil | MSEAWNERMRLIRFRRKRERSTFREQLRILPKWLVWTCVFLTV |
| Ga0307469_114136001 | 3300031720 | Hardwood Forest Soil | MSDAWNQRLRLIRFRRKRERSTFREELRILPKWLIWTCVGLYFLALIIGIGVNVH |
| Ga0302321_1033924162 | 3300031726 | Fen | MSEAFNERLRLIRFRRKREKSKFTQELRIIPRWLVWTCIIKYILALAIGVLLDVHQIQTGGEM |
| Ga0306918_111090862 | 3300031744 | Soil | MSDAFNERLRLIRFRRKRERSKFTQELKIIPKWLVWTCIVLWVLA |
| Ga0318494_104571001 | 3300031751 | Soil | MSESFNERLRLIRFRRKRERSTFREELRIIPKWLVWLCIALY |
| Ga0318546_110456391 | 3300031771 | Soil | MSESLNERLRLIRFRRKRERSTFREELRIIPKWLVWLCIALYIVGLIVGLAIN |
| Ga0318568_101962703 | 3300031819 | Soil | MSESFNERLRLIRFRRKRERSTFREELRVVPKWIFWTCLVLC |
| Ga0310917_101247084 | 3300031833 | Soil | MSDSFNERLRLIRFRRKRERSTFRQELRIIPKWLV |
| Ga0306919_114302291 | 3300031879 | Soil | MSESFNERLRLIRFRRKRERSTFREELRIIPKWLVWLCIALYIVGLIIGLAINLHNFQT |
| Ga0306925_116999612 | 3300031890 | Soil | MSDAFNERLRLIRFRRKRERSTFRNELRVIPKWLV |
| Ga0306923_107643121 | 3300031910 | Soil | MSESLNERLRLIRFRRKRERSTFREELRVVPKWIFWTCL |
| Ga0306921_119896321 | 3300031912 | Soil | MSDAFNERLRLIRFRRKRERSKFTQELKIIPKWLVWTCIVLWVLAMIIGVSVNLHDFRTGGPVF |
| Ga0310912_112842542 | 3300031941 | Soil | MSESFNERLRLIRFRRKRERSTFREELRIIPKWLVW |
| Ga0310910_101353944 | 3300031946 | Soil | MSDALNERLRLIRFRRKRERSTFREELRIIPKWLIWLCLALWTLAVIIGVAVNLHLAE |
| Ga0310909_107077141 | 3300031947 | Soil | MSESFNERLRLIRFRRKRERSTFREELRVVPKWIFWTCLILCVLGLAI |
| Ga0310909_107761393 | 3300031947 | Soil | MSEAWNERMRLIRFRRKRERSTFREQLRILPKWLVWTCVFLTVLALV |
| Ga0310909_110687192 | 3300031947 | Soil | MSDAFNERLRLIRFRRKRERSKFTQELKIIPKWLVWTCIVLWVLAMIIGVSVNLHDFRTGGPVFPD |
| Ga0310911_104485211 | 3300032035 | Soil | MSDSFNERLRLIRFRRKRERSTFRQELRIIPKWLVWLCIALSMLALILG |
| Ga0318558_103836131 | 3300032044 | Soil | MSESFNERLRLIRFRRKRERSTFREELRIIPKWLVWLCIALYIVGLII |
| Ga0318575_104481032 | 3300032055 | Soil | MSDSFNERLRLIRFRRKRERSTFRQELRIIPKWLVWLCIALSMLALILGITINLHNFS |
| Ga0318575_104887661 | 3300032055 | Soil | MSDALNERLRLIRFRRKRERSTFREELRIIPKWLIWLCLALWTLAVIIGVAVNLHLA |
| Ga0318533_112216831 | 3300032059 | Soil | MSDAFNERLRMIRFRRKKERTRFRDELRIIPKWLF |
| Ga0318514_107641541 | 3300032066 | Soil | MSESFNERLRLIRFRRKRERSTFREELRIIPKWLVWLCIALYIVALIIGLAINLH |
| Ga0318577_102606582 | 3300032091 | Soil | MSESFNERLRLIRFRRKRERSTFREELRIIPKWLVWLCIALYIAGLI |
| Ga0307470_104414403 | 3300032174 | Hardwood Forest Soil | MSDSFNERMRLIRFRRKRERTRFRDELRIIPRWLIRTCVALWLIALAIGVSVNVYNM |
| Ga0307472_1006882311 | 3300032205 | Hardwood Forest Soil | MSDSFNERMRLIRFRRKRERTRFRDELRIIPRWLIRTC |
| Ga0307472_1007106403 | 3300032205 | Hardwood Forest Soil | MSDAFTERLRLIRFRRKREHTSFRDELRIIPKWLVVLCL |
| Ga0335082_117114871 | 3300032782 | Soil | MSDAFNERLRLIRFRRKRERPAFREELRVIPKWLVWLCLTLYVVALVIGLSVNL |
| Ga0335079_105153281 | 3300032783 | Soil | MSDAFNERLRLIRFRRKRERSNFTQELKIVPKWLMGMCIVLWIVALIVGVAVNLHNFR |
| Ga0335079_105330583 | 3300032783 | Soil | MSDAFSERLRLIRFRRKRERAKFTQELRVIPRWLVWTCLTLYILA |
| Ga0335078_110820513 | 3300032805 | Soil | MSDTFNERLRLIRFRRKRERSSLRQELRIIPKWLVWLCVCLYAAALIIGLGINLHGFQTHGP |
| Ga0335080_103263491 | 3300032828 | Soil | MSDAFNERLRLIRFRQKRERAKFREELRVIPRWLVRTCVVLYVLAVVIGLGVNIHNFQTNGPIFPD |
| Ga0335070_117213152 | 3300032829 | Soil | MRREEQAMSDAWNQKLRMIRFRRKRERSTFREELKLV |
| Ga0335076_100655754 | 3300032955 | Soil | MSDAWNQKLRMIRFRRRRERSTFREELKLVPKWLVWTCVVLIFLA |
| Ga0335084_101358594 | 3300033004 | Soil | MSDAFNERLRLIRFRRKRERAKFTQELKIIPKWLVGICVALYVLAIVIGVGVNIHNFQT |
| Ga0335084_108274403 | 3300033004 | Soil | MSDAWNQKLRMIRFRRRRERSTFREELKLVPKWLVWTCVVLIFL |
| Ga0335077_104606883 | 3300033158 | Soil | MSDAFNERLRLIRFRRKRERSTFREELRVIPKWLVWLCVVLYV |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |