Metagenome / Metatranscriptome Family F069217

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069217
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	53 residues
Representative Sequence	MKKSLFASILMVLIGGFFASSVIADDTLVRFKGAIGDIPVANVAGTPNPDG
Number of Associated Samples	102
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	70.97 %
% of genes near scaffold ends (potentially truncated)	94.35 %
% of genes from short scaffolds (< 2000 bps)	90.32 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.097 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (18.548 % of family members)
Environment Ontology (ENVO)	Unclassified (36.290 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (36.290 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 44.30% β-sheet: 0.00% Coil/Unstructured: 55.70%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF13668	Ferritin_2	13.71
PF03992	ABM	9.68
PF03459	TOBE	1.61
PF13419	HAD_2	0.81
PF10604	Polyketide_cyc2	0.81
PF12681	Glyoxalase_2	0.81
PF14534	DUF4440	0.81
PF01471	PG_binding_1	0.81
PF08450	SGL	0.81
PF01315	Ald_Xan_dh_C	0.81
PF02954	HTH_8	0.81
PF13360	PQQ_2	0.81
PF04972	BON	0.81
PF14552	Tautomerase_2	0.81
PF13570	PQQ_3	0.81
PF07992	Pyr_redox_2	0.81
PF07859	Abhydrolase_3	0.81
PF11578	DUF3237	0.81
PF02525	Flavodoxin_2	0.81
PF00501	AMP-binding	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.81
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.81
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.10 %
Unclassified	root	N/A	37.90 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.10 %
Unclassified	root	N/A	37.90 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.10 %
Unclassified	root	N/A	37.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.45 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	5.65 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	5.65 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.81 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.90 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.65 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5.65 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.61 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.81 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.81 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.65 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	3.23 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	1.61 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.81 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.81 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.65 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.23 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	1.61 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.81 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.81 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.65 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.23 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	1.61 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.81 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.81 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.65 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.23 %
Pseudomonas aeruginosa group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group	1.61 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.81 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.81 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.65 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.23 %
Pseudomonas resinovorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas resinovorans	1.61 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.81 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.81 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459007\|GJ61VE201EPJU4	Not Available	525	Open in IMG/M
2170459010\|GIO7OMY01ATGJ0	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
2170459011\|GKWS7RC01C6ZV8	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
2170459013\|GO6OHWN01CKGM2	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
2199352025\|deepsgr__Contig_120207	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1342	Open in IMG/M
2209111022\|2221207424	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1859	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100434566	All Organisms → cellular organisms → Bacteria → Proteobacteria	828	Open in IMG/M
3300000559\|F14TC_101586596	All Organisms → cellular organisms → Bacteria	1946	Open in IMG/M
3300000891\|JGI10214J12806_10518421	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300004157\|Ga0062590_101491257	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300005179\|Ga0066684_10384320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas resinovorans	941	Open in IMG/M
3300005186\|Ga0066676_10114562	All Organisms → cellular organisms → Bacteria	1654	Open in IMG/M
3300005289\|Ga0065704_10190432	All Organisms → cellular organisms → Bacteria	1192	Open in IMG/M
3300005289\|Ga0065704_10746473	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300005293\|Ga0065715_10079386	Not Available	545	Open in IMG/M
3300005293\|Ga0065715_10323728	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	996	Open in IMG/M
3300005294\|Ga0065705_10013904	All Organisms → cellular organisms → Bacteria	2233	Open in IMG/M
3300005294\|Ga0065705_10943216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas aeruginosa group → Pseudomonas resinovorans	563	Open in IMG/M
3300005295\|Ga0065707_10194117	All Organisms → cellular organisms → Bacteria	1345	Open in IMG/M
3300005295\|Ga0065707_10579920	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300005343\|Ga0070687_101463498	Not Available	512	Open in IMG/M
3300005356\|Ga0070674_100244726	All Organisms → cellular organisms → Bacteria → Proteobacteria	1406	Open in IMG/M
3300005436\|Ga0070713_100095940	All Organisms → cellular organisms → Bacteria → Proteobacteria	2559	Open in IMG/M
3300005437\|Ga0070710_10765780	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	687	Open in IMG/M
3300005451\|Ga0066681_10441923	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300005545\|Ga0070695_101097569	Not Available	651	Open in IMG/M
3300005559\|Ga0066700_10037460	All Organisms → cellular organisms → Bacteria	2894	Open in IMG/M
3300006046\|Ga0066652_100599705	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M
3300006173\|Ga0070716_101526296	Not Available	547	Open in IMG/M
3300006791\|Ga0066653_10337683	Not Available	761	Open in IMG/M
3300006796\|Ga0066665_11157865	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300006845\|Ga0075421_101868808	All Organisms → cellular organisms → Bacteria → Proteobacteria	644	Open in IMG/M
3300006893\|Ga0073928_10472181	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300007255\|Ga0099791_10547984	Not Available	563	Open in IMG/M
3300009012\|Ga0066710_102039661	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300009137\|Ga0066709_104562816	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300009176\|Ga0105242_10208078	Not Available	1741	Open in IMG/M
3300010397\|Ga0134124_10787343	All Organisms → cellular organisms → Bacteria	949	Open in IMG/M
3300010400\|Ga0134122_10676737	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300010403\|Ga0134123_11108737	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	815	Open in IMG/M
3300012198\|Ga0137364_11107515	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300012200\|Ga0137382_10135512	All Organisms → cellular organisms → Bacteria	1658	Open in IMG/M
3300012200\|Ga0137382_10665569	Not Available	745	Open in IMG/M
3300012202\|Ga0137363_10328840	Not Available	1260	Open in IMG/M
3300012285\|Ga0137370_10627002	Not Available	666	Open in IMG/M
3300012285\|Ga0137370_10733838	Not Available	613	Open in IMG/M
3300012285\|Ga0137370_10955188	Not Available	529	Open in IMG/M
3300012354\|Ga0137366_10100543	All Organisms → cellular organisms → Bacteria	2192	Open in IMG/M
3300012355\|Ga0137369_11010285	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300012356\|Ga0137371_10523994	Not Available	914	Open in IMG/M
3300012582\|Ga0137358_10935879	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300012917\|Ga0137395_10312903	All Organisms → cellular organisms → Bacteria	1114	Open in IMG/M
3300012924\|Ga0137413_10053226	All Organisms → cellular organisms → Bacteria	2356	Open in IMG/M
3300012924\|Ga0137413_11416405	Not Available	562	Open in IMG/M
3300012925\|Ga0137419_10252196	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1330	Open in IMG/M
3300012930\|Ga0137407_11305717	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300012944\|Ga0137410_11168629	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300012951\|Ga0164300_10421045	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300012951\|Ga0164300_10728727	Not Available	605	Open in IMG/M
3300012955\|Ga0164298_10132409	Not Available	1373	Open in IMG/M
3300012961\|Ga0164302_10211464	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1202	Open in IMG/M
3300012961\|Ga0164302_11623355	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	539	Open in IMG/M
3300012971\|Ga0126369_11455878	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	775	Open in IMG/M
3300012977\|Ga0134087_10224391	All Organisms → cellular organisms → Bacteria	851	Open in IMG/M
3300012977\|Ga0134087_10767687	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300012984\|Ga0164309_10527840	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	909	Open in IMG/M
3300012984\|Ga0164309_11499384	Not Available	577	Open in IMG/M
3300012985\|Ga0164308_10912136	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	775	Open in IMG/M
3300012985\|Ga0164308_12151588	Not Available	520	Open in IMG/M
3300013297\|Ga0157378_10235315	All Organisms → cellular organisms → Bacteria	1747	Open in IMG/M
3300014969\|Ga0157376_12116979	Not Available	601	Open in IMG/M
3300015052\|Ga0137411_1263665	All Organisms → cellular organisms → Bacteria	2627	Open in IMG/M
3300015053\|Ga0137405_1222267	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1681	Open in IMG/M
3300015053\|Ga0137405_1365623	All Organisms → cellular organisms → Bacteria	3386	Open in IMG/M
3300015242\|Ga0137412_10765710	Not Available	712	Open in IMG/M
3300018028\|Ga0184608_10250957	Not Available	779	Open in IMG/M
3300018071\|Ga0184618_10229544	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300018072\|Ga0184635_10361491	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300018075\|Ga0184632_10051517	All Organisms → cellular organisms → Bacteria	1777	Open in IMG/M
3300018075\|Ga0184632_10339769	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300018075\|Ga0184632_10360019	Not Available	620	Open in IMG/M
3300018433\|Ga0066667_11777750	Not Available	557	Open in IMG/M
3300018482\|Ga0066669_11435206	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300019877\|Ga0193722_1026227	Not Available	1506	Open in IMG/M
3300019879\|Ga0193723_1166293	Not Available	578	Open in IMG/M
3300019881\|Ga0193707_1080723	All Organisms → cellular organisms → Bacteria	997	Open in IMG/M
3300019883\|Ga0193725_1149134	Not Available	505	Open in IMG/M
3300019886\|Ga0193727_1046622	All Organisms → cellular organisms → Bacteria	1414	Open in IMG/M
3300019886\|Ga0193727_1101458	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300019889\|Ga0193743_1124266	Not Available	925	Open in IMG/M
3300019996\|Ga0193693_1004308	All Organisms → cellular organisms → Bacteria	3170	Open in IMG/M
3300020001\|Ga0193731_1097399	Not Available	759	Open in IMG/M
3300020059\|Ga0193745_1036853	Not Available	1073	Open in IMG/M
3300021344\|Ga0193719_10243471	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300021475\|Ga0210392_10370996	Not Available	1039	Open in IMG/M
3300022534\|Ga0224452_1069691	Not Available	1059	Open in IMG/M
3300022694\|Ga0222623_10048521	Not Available	1632	Open in IMG/M
3300022694\|Ga0222623_10403706	Not Available	519	Open in IMG/M
3300022756\|Ga0222622_10036321	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2674	Open in IMG/M
3300025915\|Ga0207693_10024132	All Organisms → cellular organisms → Bacteria	4828	Open in IMG/M
3300025919\|Ga0207657_10282594	Not Available	1317	Open in IMG/M
3300025938\|Ga0207704_11809243	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300025986\|Ga0207658_10401696	Not Available	1205	Open in IMG/M
3300026285\|Ga0209438_1137745	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	650	Open in IMG/M
3300026308\|Ga0209265_1012848	All Organisms → cellular organisms → Bacteria → Proteobacteria	2607	Open in IMG/M
3300026312\|Ga0209153_1029470	Not Available	1865	Open in IMG/M
3300026318\|Ga0209471_1251997	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300026324\|Ga0209470_1033830	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2594	Open in IMG/M
3300026324\|Ga0209470_1068082	All Organisms → cellular organisms → Bacteria	1662	Open in IMG/M
3300026551\|Ga0209648_10478227	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	745	Open in IMG/M
3300027903\|Ga0209488_10182778	All Organisms → cellular organisms → Bacteria	1582	Open in IMG/M
3300028809\|Ga0247824_10327128	Not Available	869	Open in IMG/M
3300030923\|Ga0138296_1403735	Not Available	1415	Open in IMG/M
3300030923\|Ga0138296_1760174	Not Available	737	Open in IMG/M
3300031128\|Ga0170823_14956499	Not Available	561	Open in IMG/M
3300031446\|Ga0170820_12197463	Not Available	682	Open in IMG/M
3300031720\|Ga0307469_10449011	Not Available	1116	Open in IMG/M
3300031720\|Ga0307469_12269465	Not Available	529	Open in IMG/M
3300031740\|Ga0307468_100520061	All Organisms → cellular organisms → Bacteria	949	Open in IMG/M
3300031754\|Ga0307475_10777416	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300031820\|Ga0307473_11394568	Not Available	528	Open in IMG/M
3300032174\|Ga0307470_10745997	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	752	Open in IMG/M
3300032174\|Ga0307470_11011853	Not Available	662	Open in IMG/M
3300032205\|Ga0307472_101436616	Not Available	671	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.32%
Host-Associated	Host-Associated	9.68%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.45%
Plants	Host-Associated → Plants	9.68%
Aquatic	Environmental → Aquatic	8.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.45%
Sediment	Environmental → Aquatic → Sediment	8.06%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.03%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.06%
Loam	Environmental → Terrestrial → Soil → Loam	5.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.23%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.42%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.81%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	44.35%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	19.35%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.06%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.42%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.81%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.81%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	18.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.29%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.45%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.84%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.03%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.23%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	3.23%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	3.23%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.42%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	1.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.61%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.81%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.81%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.81%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
2170459011	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect Gram positive lysis 0-10cm	Environmental	Open in IMG/M
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
2209111022	Grass soil microbial communities from Rothamsted Park, UK - Chitin enrichment	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019889	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2	Environmental	Open in IMG/M
3300019996	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a2	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020059	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a2	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300030923	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
L02_02760990	2170459007	Grass Soil	MKKSLVAFVVMVLIGGSFASSVIADDTLVRFKGAIGDIPVANVAGTPNPDGSFPDVIRNTVRGVDPAGQI
F62_06074570	2170459010	Grass Soil	MKGNEGEVMKKSVFASILMVLIGGSFASSVIADDTLVRFKGAIGDIPVANVAGTANPDGSFPDVIR
F64_01867880	2170459011	Grass Soil	KNRRCSYEKSLVAFVVMVLIGGSFASSVIADDTLVRFRGAIGDIPVANVAGTPTLTAASL
N57_03462050	2170459013	Grass Soil	YEKSLFGGILMVLIGGCFASSVIADDTLVRFKGAIGDLPVANVAGTQTLTAASLT
deepsgr_01914440	2199352025	Soil	MKKSLFGCILMVLIGGCFASSVIADDTLVRFKGAIGDLPVANVAGTPNPDGSFPDVIRNMSAASTLPVKSG
2222041907	2209111022	Grass Soil	MKKSLFAFVVMVLIGGSFASSVIADDTLVRFKGAIGDIPVANVRVPPTLTAASLT
INPhiseqgaiiFebDRAFT_1004345661	3300000364	Soil	MKKSLFASILMVLLEGFFASSVLAAGTLVKFDGAIGDIPVANVA
F14TC_1015865961	3300000559	Soil	MKKSLFASTFIILLGGFFASSVIADDTLVRFQGAIGDIPVANVA
JGI10214J12806_105184211	3300000891	Soil	MKKRLFASILMVLIGGSFASSVIADDTLVRFKGAIGDIPVANVAGTPNPD
Ga0062590_1014912571	3300004157	Soil	MKKSMFASILMVLIGGSFASSVLADDTLVRFKGAIGDIPVAN
Ga0066684_103843202	3300005179	Soil	MKKSLFASILMVLIGGSFASSVIADDTLVRFKGAIGDIPVANVAGTPTLTAASLT*
Ga0066676_101145621	3300005186	Soil	MKKSLFASILMVLIGGSFASSVIADDTLVRFKGAIGDIPVANVAGTP
Ga0065704_101904322	3300005289	Switchgrass Rhizosphere	MKKSLFASILMVLIGGFFASSVIADDTLVRFQGAIGDIPVANVAGTANPDGTFPNVTQNI
Ga0065704_107464731	3300005289	Switchgrass Rhizosphere	MKKSLFAFIVMVLIGGSFASSVIADDTLVRFKGAIGDIPVANVAGTPNPDGSFPDVI
Ga0065715_100793862	3300005293	Miscanthus Rhizosphere	MKKSLFASILMVLMGGSFASSVVADDKLVRFRGAIGDIPVSNVAGTPNPDG
Ga0065715_103237282	3300005293	Miscanthus Rhizosphere	MKKSLFAFIVLVLIGGSFTSSAIADDTLVSFKGAIGDIPVANVAGTPNPNGSFPDVIRNTVRGVDPAGQIW
Ga0065705_100139041	3300005294	Switchgrass Rhizosphere	MKKRLFASILMVLIGGSFASSIIADDTLVRFKGAIGDIPVANVAG
Ga0065705_109432161	3300005294	Switchgrass Rhizosphere	MKKSLFGRILMVLIGASFASSVIADDTLVRFKGAIGDIPVAN
Ga0065707_101941171	3300005295	Switchgrass Rhizosphere	MKKSLFASILMVLIGGFFASSVIADDTLVRFQGAIGDIPVANVAGTANPDGTFPNV
Ga0065707_105799202	3300005295	Switchgrass Rhizosphere	MKKSLFAFIVMVLIGGSFASSVIADDTLVRFKGAIGDIPVANVAGTPNPDGSFPDVIRNIVRGVNPA
Ga0070687_1014634981	3300005343	Switchgrass Rhizosphere	MKKALVLLSFLVALFARSAVANDTLVKFRGGIGDIPVANVAGTATPDGTFPEVTRNIVRGVNPA
Ga0070674_1002447263	3300005356	Miscanthus Rhizosphere	MKRSYLAVSVLTIVWGGFTLSAWGADDTLARFKGGIGVHPVSNISGVANADGTFPNVTRNIVRLINPAGQ
Ga0070713_1000959405	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKKSLFASILMVLMGGSFASSVVADDKLVRFRGAIGDIPVSNVAG
Ga0070710_107657801	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MKKSLFAFIVLVLIGGSFTSSAIADDTLVSFKGAIGDLPVANVAGTPNPDGSF
Ga0066681_104419232	3300005451	Soil	MKKSLFASILMVLIGGLLASSVIADDTLVRFKGAIGDIPVANVAGTPNPDGSFPDVIRNIVRGVNPA
Ga0070695_1010975692	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MKTSLFASILIVLIGGFFASSVIADDTLVSFKGAIGDIPVANV
Ga0066700_100374601	3300005559	Soil	MRESLFASILMVLIGGFFASSVMADDTLVRFQGGIGDIPVSN
Ga0066652_1005997052	3300006046	Soil	MKKSLFASILMVLIGGSFASSVIADDTLVRFKGAIGDIPVANVAGT
Ga0070716_1015262961	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MKKSLFAFIATVLIGGSFTSSAIADDTLVSFKGAIGDLPVANVAGTPNPDGSFPDVIRNIVRGVNPAGQI
Ga0066653_103376831	3300006791	Soil	MKKSLFGCILMVLIGGFFASSVIADDTLVRFKGAIGD
Ga0066665_111578652	3300006796	Soil	MKKSLFASILMVLIGGLLASSVIADDTLVRFKGAIGDIPVANVAGTPTLTAASLT*
Ga0075421_1018688082	3300006845	Populus Rhizosphere	MKKSLFTSILMVLIGGFFASAVVAEQTLVKFRGSIGDIPVANVAGTVNPDGTFPDVTRNIVRGV
Ga0073928_104721811	3300006893	Iron-Sulfur Acid Spring	MKKSLFASILMVLVGGFFASSVVADDTLVEFQGGIGVIPVSNVAG
Ga0099791_105479842	3300007255	Vadose Zone Soil	MVLIGAFFASSVIADDSLVRFQGAIGDIPVSNVAGIANPDGTFPDVTRNIVRLVNPAGQI
Ga0066710_1020396612	3300009012	Grasslands Soil	MKKSLFASIVMVLIGGSFASSVIADDTLVRFKGAIGDIPVANVAGTPNPDGSFPDVIRNIVRGVNPA
Ga0066709_1045628161	3300009137	Grasslands Soil	MKKSLFATILMVFIGGFFASSVIADDTLVRFQGAIGDIPV
Ga0105242_102080782	3300009176	Miscanthus Rhizosphere	MVLIGGCFASSVIADDTLVSFRGAIGDLPVANVAGTPNPDGSFPDVIRNIVRGV
Ga0134124_107873431	3300010397	Terrestrial Soil	MKKSVFASILAVLIGGFFAWSVVAADTLVKFEGAIGDIPVANVAGTANP
Ga0134122_106767372	3300010400	Terrestrial Soil	MKKSVFASILTVLIGGFFAWSVVAADTLVKFEGAIGDIPVANVAG
Ga0134123_111087371	3300010403	Terrestrial Soil	MVLIGGCFTSSVIADETLVSFRGAIGDIPVANVAGTPNPDGSFPDVIRN
Ga0137364_111075151	3300012198	Vadose Zone Soil	MVLIGGSFASSVIADDTLVRFKGAIGDIPVANVAGTPNPDGSFPDVIRNIVRGVNPAG
Ga0137382_101355121	3300012200	Vadose Zone Soil	MKKSLFASIVMVLIGGSFASSVIADDTLVRFKGAIGDIPVANVAGTPNPDGSFPDVIRNIVRGVNP
Ga0137382_106655691	3300012200	Vadose Zone Soil	MVLIGGSFASSVIADDTLVRFKGALGDIPVANVAGTPNPDGSFPDVIRNIVRGVNPAGQI
Ga0137363_103288402	3300012202	Vadose Zone Soil	MVLIGGSFASSIIADDTLVRFKGAIGDLPVANVAGTPNPDGSFPDVIRNTVR
Ga0137370_106270022	3300012285	Vadose Zone Soil	MKTKNKNGGEVMKKSLFASIFMALIGGSFASSIMADDTLVRFKGAIGDIPVANVAGTP
Ga0137370_107338381	3300012285	Vadose Zone Soil	MVLIGGSFASSVIADNTLVRFRGAIGDIPVANVAGIPNPDGSLPDVIRNIVR
Ga0137370_109551882	3300012285	Vadose Zone Soil	MVLIGAFFASSVIADDSLVRFQGAIGDIPVSNVAGTPTPAGSLPDGI
Ga0137366_101005434	3300012354	Vadose Zone Soil	MVLIGGSFASSVIADDTLVRFKGAIGDIPVANVAGTPNPDGSFPDVVRNIV
Ga0137369_110102851	3300012355	Vadose Zone Soil	MVLIGGSFASSVIADAKLVRFKGAIGDIPVANVAGTPNPDGSFPDV
Ga0137371_105239941	3300012356	Vadose Zone Soil	MKKSLFASILMVLIGGSFASSVIADDTLVRFKGAIGDIPVANVAG
Ga0137358_109358792	3300012582	Vadose Zone Soil	MKKILFASILMVLTGGFFASSVIADDSLVRFQGAIGDIPVSNVAG
Ga0137395_103129031	3300012917	Vadose Zone Soil	MVLIGGFFASSVIADDSLVRFQGAIGDIPVSNVAGAVNPDGSFPDVIRNIV
Ga0137413_100532261	3300012924	Vadose Zone Soil	MEVVMKKSLFASILMVLIGGCFASSVIADDTLVRFKGAIGDIPVANVAGTPNPDGSFPDV
Ga0137413_114164051	3300012924	Vadose Zone Soil	MKKSMFASIVMVLIGGCFASSVIADDTLVRFKGAIGD
Ga0137419_102521961	3300012925	Vadose Zone Soil	MVLIGGSFGSSVIADDTLVRFKGAIGDIPVANVAGSPNPDGSFPDVIRNIVRGVDP
Ga0137407_113057172	3300012930	Vadose Zone Soil	MKKSLFASILMVLIGGFVASSVIADETLVRFQGAIGDIPVANVAGTANPDGTFP
Ga0137410_111686291	3300012944	Vadose Zone Soil	MVLIGGVFASSVLADDTLARFQGAIGDIPVSNVAGAANPDGTFPNVTQNIVRGINPA
Ga0164300_104210452	3300012951	Soil	MKKSLFASILMVLMGGSFASSVIADNTLVRFRGAIGDIPVSNVAG
Ga0164300_107287271	3300012951	Soil	MKKSVFTSILVVLIGGSLASSVIADDTLVRFKGAIGDI
Ga0164298_101324092	3300012955	Soil	MKKSLFASIVMVLIGGSFASSVIADDTLVRFRGASGDIPVANVAGTPNPDGS
Ga0164302_102114641	3300012961	Soil	MKKSLFAFIVTVLIGGSFTSSAIADDTLVSFKGAIGDLPVANVAG
Ga0164302_116233551	3300012961	Soil	MKQNKNGGAVMKKSLFAFIVLVLIGGSFTSSAIADDTLVSFKGAIGDIPVANVAGTPNPNGS
Ga0126369_114558781	3300012971	Tropical Forest Soil	MKKGLFASIPVVLIGGFFASSVIADDTLVRFKGAVGDIPVANVAGPRIRR*
Ga0134087_102243911	3300012977	Grasslands Soil	MKKSLFASIVMVLIGGSFASSVIADDTLVRFKGAIGDIPVANVAGTPNPD
Ga0134087_107676871	3300012977	Grasslands Soil	MVLIGGLLASSVIADDTLVRFKGAIGDIPVANVAGTPNPDGSFPDV
Ga0164309_105278401	3300012984	Soil	MKQNKNGGAVMKKSWFGCILVVLIGGSFASSVIADDTLVSFKGAIGDIPVANVAGTPNPNGSFPDVIQNIVRGVN
Ga0164309_114993841	3300012984	Soil	MKKSLFASILMVLIGGSFASSVIADDTLVRFKGAIGDIPVANVA
Ga0164308_109121361	3300012985	Soil	MKKSLFAFIVTVLIGGSFTSSAIADDTLVSFKGAIGD
Ga0164308_121515881	3300012985	Soil	MKQNKNGGAVMKKSWFGCILVVLIGGSFASSVIADDTLVSFKGAIGDLPVANVAGTPNPDGSFPDVIRNI
Ga0157378_102353151	3300013297	Miscanthus Rhizosphere	MKKSLFASTFIILLGGFFASSVIADDTLVRFQGAIGDIPVANVAGTANPDGTFPNVTRNIVRD
Ga0157376_121169791	3300014969	Miscanthus Rhizosphere	MVLIGGCFASSVIADETLVSFRGAIGDIPVANVAGTPNPDGSFPDVIR
Ga0137411_12636653	3300015052	Vadose Zone Soil	MKKSLFASILMVLIGGFVASSVIADETLVRFQGAIGDIPVANVAGTANPTAPSLT*
Ga0137405_12222671	3300015053	Vadose Zone Soil	MKKSLFASILMVLIGGFFASSVIADDTLVSFKGEGRHR*
Ga0137405_13656231	3300015053	Vadose Zone Soil	MKKSLFASILMVLIGGSFASSVIADDTLVRFKGAIGDIPVANVAGTPNPDDPDGSFPDVIRNIVRG
Ga0137412_107657101	3300015242	Vadose Zone Soil	MVLIGGFFASSVIADDTLVRFQGAIGDIPVANVAGTANPDGTFPDVVRNIVRGACCWAEATP
Ga0184608_102509571	3300018028	Groundwater Sediment	MKKSLFGCILMVLIGGSFASSVIADDTLVRFKGAIGDIPVANVAGTPNPDG
Ga0184618_102295441	3300018071	Groundwater Sediment	MKKSLFASILMVLIGGSFASSVIADDTLVRFKGAIGDIPVANVAGTPNPDGSFPDVIRNIVR
Ga0184635_103614911	3300018072	Groundwater Sediment	MKKSLFASILMVLIGGFFASSVIADDTLVRFQGAIGDIPVANVA
Ga0184632_100515171	3300018075	Groundwater Sediment	MKKAFFASIAVLFIVWFFTLPVSADDKDTLVRFKGGIGVHAVSNVSGTANADGT
Ga0184632_103397691	3300018075	Groundwater Sediment	MKKSLFASILMVLIGGFFASSVIADDTLVRFKGAIGDIPVANVAGTPNPDG
Ga0184632_103600192	3300018075	Groundwater Sediment	MKKSLFGCILMVLIGGCLASSVIADDTLVRFKGAIGDIPVANVAGTPNPDGSFPDVIRN
Ga0066667_117777502	3300018433	Grasslands Soil	MKKSLFASILMVLIGGFFASSVIADDTLVSFKGGIGDIPVANVAGTANPDGTFP
Ga0066669_114352061	3300018482	Grasslands Soil	MVLIGGSFASSVIADDTLVRFKGAIGDIPVANVAGTPNPDGSFPDVIRNIVRGVNPA
Ga0193722_10262272	3300019877	Soil	MKKSLFASIFMALIGGSFASSIIADDTLVRLKGAIGDIPVAN
Ga0193723_11662932	3300019879	Soil	MKKSLFASILMVLIGGSFASSVIADDTLVRFKGAIGDLPVANVTGTPNPDGSFPDVIRNIVRG
Ga0193707_10807232	3300019881	Soil	MKKSLFASILTALVGGFFASSVMADDTLVKFQGAIGDIPVANVAGVANPDGTFPDVTRNIVRLVNPAG
Ga0193725_11491342	3300019883	Soil	MKKSLFASILVVLIGGSFASSVLADDTLVRFRGAIG
Ga0193727_10466221	3300019886	Soil	MKKSLVASIVMVLIGGSFASSVIADDTLVRFRGAIGDLPVANVAGTPNADGSFP
Ga0193727_11014581	3300019886	Soil	MKKSLFAVVLMVLIGAFLASSVIADDTLVRFQGAIGDIPVANV
Ga0193743_11242662	3300019889	Soil	MKKSLFASTFIILLGGFFASSVIADDTLVRFQGAIGDIPVANVAGTANADGTFPN
Ga0193693_10043081	3300019996	Soil	MKKSVFASIVMVLIGGCFASSVIADDTLVRFKGAIGDIPVANVAGTPNPDG
Ga0193731_10973991	3300020001	Soil	MKKSLFASILMVLIGGSFASSVIADGTLVRFKGAIGDIPVAN
Ga0193745_10368532	3300020059	Soil	MKKSLFASIVMVLIGGSFASSVIADDTLVRFRGAIGDLPVANVAGTPNPDGSFPDVIRNIVRGVD
Ga0193719_102434711	3300021344	Soil	MKKSAFASILTVLIGVFFAWSVVAADTLVKFEGAIGDIPVANVAGTANPDGTFPNVTRNI
Ga0210392_103709961	3300021475	Soil	MKKSLLASIVMVLIGGSFASSVIADDKLVSFRGAIGDLPVANVAGTPNADGSF
Ga0224452_10696911	3300022534	Groundwater Sediment	MKKSLFGCILMILIGGCLASSVIADDTLVRFKGAIGDIPVANVAGIANPDGSFPDVIRNTVRGV
Ga0222623_100485212	3300022694	Groundwater Sediment	MKKSVFASILMVLIGGSFASSVIADDTLVRFKGAIGDIPVANVAGIPNPDGSFPD
Ga0222623_104037061	3300022694	Groundwater Sediment	MKKSLFASILMVLIGGSFASSVIADDTLVSFKGAIGDIPVANVAGTPNPDG
Ga0222622_100363211	3300022756	Groundwater Sediment	MKKSLFASILMVLMGGSFASSVIADDKLVRFKGAIGDIPVSN
Ga0207693_100241321	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MKKSLFASILMVLMGGSFASSVIADNTLVRFRGAIGDIPVSNVAGTPNPDGSFPNVIQNIVRGV
Ga0207657_102825941	3300025919	Corn Rhizosphere	MKKSLFGCILMVLIGGCFASSVVADDTLVRFKGAIGDIPVANVAGTPNPDGSFP
Ga0207704_118092432	3300025938	Miscanthus Rhizosphere	MKKSLFVSTFIILLGGFFASSVIADDTLVRFQGAIGDIPVANVAGTANPADGTFP
Ga0207658_104016962	3300025986	Switchgrass Rhizosphere	MKKSLFASIVMVLIGGCFASSVIADDTLVSFRGAIGDLP
Ga0209438_11377452	3300026285	Grasslands Soil	MKKSLFAAILMVLVGGFLASSVTADDTLVRFQGAI
Ga0209265_10128484	3300026308	Soil	MKKSLFASILMVLIGGSFASSVIADDTLVRFKGAIGDIPVANVAGTPTLTAASLT
Ga0209153_10294702	3300026312	Soil	MVLIGGSFSSSITANDTLVRFKGAIGDIPLANVAGTPNLDGSFPDVI
Ga0209471_12519971	3300026318	Soil	MRESLFASILMVLIGGFFASSVMADDTLVRFQGGIGDIPVSNVAGTVN
Ga0209470_10338301	3300026324	Soil	MKKSLFASILMVLIGGSFASSVIADDTLVRFKGAIGDIPVANVAGTPNPDGSFPDVIR
Ga0209470_10680822	3300026324	Soil	MKKSLFASILMVLIGVSFASSVIADDTLVRFKGAIGDIPVANVAGTPNPDGSFPDVIR
Ga0209648_104782272	3300026551	Grasslands Soil	MKKSLFASILVVLIGGFFASAVVADDTLVRFKGGIGVIPVSNVAGTANADGTFPNVTRNI
Ga0209488_101827781	3300027903	Vadose Zone Soil	MKKSLFASILTALVGGFFASSVMADDTLAKFQGAIGDIPVANVAGVAN
Ga0247824_103271281	3300028809	Soil	MKKSLFASILMVLIGGSFASSVIADDTLVRFKGAIGDIPVANVAGTPNPDGSFPDVIRNI
Ga0138296_14037351	3300030923	Soil	MKKSLFASILMVLIGGSFASSVIADDTLVRFKGAIGDI
Ga0138296_17601742	3300030923	Soil	MKKSVFTSILVVLIGGSLASSVIADDTLVRFKGAIGDIPVANVAGTANPDGSFPDVIRNIVRGVNPA
Ga0170823_149564991	3300031128	Forest Soil	MKKSVFASIFMVLIGGSFASSVIADDTLVRFKGAIGDIPVSNVAGTPNPDGSFPDVIQNIVRGVNPAG
Ga0170820_121974631	3300031446	Forest Soil	MKKSLVAFVVMVLIGGSFASSVIADDTLVRFRGAIGDIPVANVAGTPNPDGSFPDVI
Ga0307469_104490111	3300031720	Hardwood Forest Soil	MNKNLFASILMVLIGGFFASSVIADDALVRFQGAIGDIPVANVAGTVNPDGTYPNVVRN
Ga0307469_122694651	3300031720	Hardwood Forest Soil	MKKRLFASILIVLLEGFSASSVKAADTLAKFDGAIGDIPVANVAGVPNPDGTFADVTRNI
Ga0307468_1005200611	3300031740	Hardwood Forest Soil	MKKSLFASILMVLIGGFFASSVIADDTLVRFQGAIG
Ga0307475_107774164	3300031754	Hardwood Forest Soil	MKKSLFVSILMLLIGGFFSSSVVADDTLVRFRGGIGDLPVSKR
Ga0307473_113945681	3300031820	Hardwood Forest Soil	MKKSLFASILMVLIGGSFASSVIADETLVRFKGAIGDI
Ga0307470_107459971	3300032174	Hardwood Forest Soil	MKKSLFAFIVLVLIGGSFTSSAIADDTLVSFKGAIGDIPVANV
Ga0307470_110118532	3300032174	Hardwood Forest Soil	MKRSLFAPVLMVLAAGSFASSAMADESLVQFQGAIGDIPVANVAGIANPDGTFPDVTRN
Ga0307472_1014366161	3300032205	Hardwood Forest Soil	MKKSLFASILMVLIGGSFASSVIADETLVRFKGAIGDIPVANVA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069217

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences