Metagenome / Metatranscriptome Family F069186

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069186
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	41 residues
Representative Sequence	MHDVATHDDSKGQYFWVWGALLVLTAIEVVLGYKQVFSPV
Number of Associated Samples	110
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.77 %
% of genes near scaffold ends (potentially truncated)	99.19 %
% of genes from short scaffolds (< 2000 bps)	88.71 %
Associated GOLD sequencing projects	106
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.742 % of family members)
Environment Ontology (ENVO)	Unclassified (29.839 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.065 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.53% β-sheet: 0.00% Coil/Unstructured: 51.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF00510	COX3	23.39
PF00115	COX1	5.65
PF02790	COX2_TM	2.42
PF02687	FtsX	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG1845	Heme/copper-type cytochrome/quinol oxidase, subunit 3	Energy production and conversion [C]	23.39
COG1622	Heme/copper-type cytochrome/quinol oxidase, subunit 2	Energy production and conversion [C]	2.42

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	66.94 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	53.23 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.03 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	53.23 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.61 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.81 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	53.23 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1.61 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.81 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	53.23 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	1.61 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.81 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	53.23 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1.61 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.81 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001084\|JGI12648J13191_1029730	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300001471\|JGI12712J15308_10021503	All Organisms → cellular organisms → Bacteria	1690	Open in IMG/M
3300005177\|Ga0066690_10541720	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	780	Open in IMG/M
3300005179\|Ga0066684_10239032	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300005332\|Ga0066388_102412831	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300005435\|Ga0070714_100107334	All Organisms → cellular organisms → Bacteria	2467	Open in IMG/M
3300005458\|Ga0070681_11712212	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300005534\|Ga0070735_10023321	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4416	Open in IMG/M
3300005602\|Ga0070762_10564489	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	752	Open in IMG/M
3300005921\|Ga0070766_10655864	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300006028\|Ga0070717_10231826	All Organisms → cellular organisms → Bacteria	1626	Open in IMG/M
3300006059\|Ga0075017_100159930	All Organisms → cellular organisms → Bacteria	1609	Open in IMG/M
3300006059\|Ga0075017_100425110	All Organisms → cellular organisms → Bacteria	999	Open in IMG/M
3300006174\|Ga0075014_100587904	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	635	Open in IMG/M
3300006175\|Ga0070712_101815798	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300006176\|Ga0070765_100590549	All Organisms → cellular organisms → Bacteria	1047	Open in IMG/M
3300009038\|Ga0099829_11557766	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300009088\|Ga0099830_10271278	All Organisms → cellular organisms → Bacteria	1347	Open in IMG/M
3300009521\|Ga0116222_1169251	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	940	Open in IMG/M
3300009623\|Ga0116133_1001427	All Organisms → cellular organisms → Bacteria → Acidobacteria	6863	Open in IMG/M
3300009646\|Ga0116132_1121903	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	797	Open in IMG/M
3300009683\|Ga0116224_10016594	All Organisms → cellular organisms → Bacteria	3645	Open in IMG/M
3300009839\|Ga0116223_10054077	All Organisms → cellular organisms → Bacteria	2612	Open in IMG/M
3300009839\|Ga0116223_10058857	All Organisms → cellular organisms → Bacteria	2487	Open in IMG/M
3300010048\|Ga0126373_11500481	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	739	Open in IMG/M
3300010360\|Ga0126372_11464029	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	718	Open in IMG/M
3300010366\|Ga0126379_12542640	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	610	Open in IMG/M
3300010876\|Ga0126361_10777768	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	673	Open in IMG/M
3300011120\|Ga0150983_12489894	All Organisms → cellular organisms → Bacteria	2037	Open in IMG/M
3300011120\|Ga0150983_15492025	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300012189\|Ga0137388_10552807	All Organisms → cellular organisms → Bacteria	1070	Open in IMG/M
3300012211\|Ga0137377_11360306	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	639	Open in IMG/M
3300012362\|Ga0137361_11809759	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300012469\|Ga0150984_107737974	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300012930\|Ga0137407_12240023	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300012961\|Ga0164302_11516939	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300014164\|Ga0181532_10711701	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300014201\|Ga0181537_10022633	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	4412	Open in IMG/M
3300014489\|Ga0182018_10102787	All Organisms → cellular organisms → Bacteria → Acidobacteria	1673	Open in IMG/M
3300014489\|Ga0182018_10707697	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300014501\|Ga0182024_11487809	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	774	Open in IMG/M
3300015357\|Ga0134072_10031201	All Organisms → cellular organisms → Bacteria → Acidobacteria	1394	Open in IMG/M
3300017823\|Ga0187818_10395700	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	613	Open in IMG/M
3300017924\|Ga0187820_1123786	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	761	Open in IMG/M
3300017927\|Ga0187824_10386047	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300017943\|Ga0187819_10129225	All Organisms → cellular organisms → Bacteria → Acidobacteria	1506	Open in IMG/M
3300017955\|Ga0187817_10775926	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	612	Open in IMG/M
3300017975\|Ga0187782_10000536	All Organisms → cellular organisms → Bacteria → Acidobacteria	25824	Open in IMG/M
3300017975\|Ga0187782_10766290	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	745	Open in IMG/M
3300018014\|Ga0187860_1152457	All Organisms → cellular organisms → Bacteria	987	Open in IMG/M
3300018019\|Ga0187874_10157791	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300018034\|Ga0187863_10282318	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	923	Open in IMG/M
3300018058\|Ga0187766_11179092	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300018085\|Ga0187772_11173901	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300018089\|Ga0187774_10658887	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300018090\|Ga0187770_11196519	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	614	Open in IMG/M
3300019786\|Ga0182025_1233758	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2438	Open in IMG/M
3300020021\|Ga0193726_1147816	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300020580\|Ga0210403_10025209	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	4744	Open in IMG/M
3300020580\|Ga0210403_11298377	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	556	Open in IMG/M
3300020580\|Ga0210403_11309498	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300020581\|Ga0210399_10389025	All Organisms → cellular organisms → Bacteria	1163	Open in IMG/M
3300021170\|Ga0210400_11115095	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	638	Open in IMG/M
3300021180\|Ga0210396_10366371	All Organisms → cellular organisms → Bacteria	1270	Open in IMG/M
3300021181\|Ga0210388_10801799	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	816	Open in IMG/M
3300021420\|Ga0210394_10734231	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	864	Open in IMG/M
3300021420\|Ga0210394_11218964	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300021432\|Ga0210384_10897640	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	786	Open in IMG/M
3300021433\|Ga0210391_10489878	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300021433\|Ga0210391_11236105	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300021474\|Ga0210390_10236187	All Organisms → cellular organisms → Bacteria → Acidobacteria	1547	Open in IMG/M
3300021477\|Ga0210398_10163867	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1810	Open in IMG/M
3300021479\|Ga0210410_10626190	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300021560\|Ga0126371_10326897	All Organisms → cellular organisms → Bacteria → Acidobacteria	1665	Open in IMG/M
3300022502\|Ga0242646_1019294	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	635	Open in IMG/M
3300022504\|Ga0242642_1018303	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300022724\|Ga0242665_10013458	All Organisms → cellular organisms → Bacteria → Acidobacteria	1743	Open in IMG/M
3300023019\|Ga0224560_100206	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3746	Open in IMG/M
3300024179\|Ga0247695_1030804	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	762	Open in IMG/M
3300026078\|Ga0207702_10766309	All Organisms → cellular organisms → Bacteria	953	Open in IMG/M
3300026215\|Ga0209849_1011506	All Organisms → cellular organisms → Bacteria → Acidobacteria	1448	Open in IMG/M
3300026294\|Ga0209839_10211621	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619	Open in IMG/M
3300026323\|Ga0209472_1250781	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300026330\|Ga0209473_1192276	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300026489\|Ga0257160_1062495	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300027080\|Ga0208237_1049439	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	627	Open in IMG/M
3300027570\|Ga0208043_1127467	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300027590\|Ga0209116_1066736	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	783	Open in IMG/M
3300027609\|Ga0209221_1089299	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	798	Open in IMG/M
3300027635\|Ga0209625_1133048	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	557	Open in IMG/M
3300027768\|Ga0209772_10073068	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300027812\|Ga0209656_10340066	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	685	Open in IMG/M
3300027911\|Ga0209698_11207731	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	557	Open in IMG/M
3300028808\|Ga0302228_10543876	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300029907\|Ga0311329_10377568	All Organisms → cellular organisms → Bacteria	999	Open in IMG/M
3300029954\|Ga0311331_11070595	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	693	Open in IMG/M
3300030043\|Ga0302306_10349544	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300030520\|Ga0311372_12768147	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300030761\|Ga0265722_106293	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300031525\|Ga0302326_11104544	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300031708\|Ga0310686_109805664	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300031708\|Ga0310686_113146181	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300031708\|Ga0310686_118274290	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300031715\|Ga0307476_10911803	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300031718\|Ga0307474_10387597	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300031718\|Ga0307474_11286269	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300031720\|Ga0307469_10778805	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	875	Open in IMG/M
3300031823\|Ga0307478_10866029	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	756	Open in IMG/M
3300031823\|Ga0307478_11331082	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300031823\|Ga0307478_11595322	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300031833\|Ga0310917_10293921	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300031947\|Ga0310909_10393791	All Organisms → cellular organisms → Bacteria	1163	Open in IMG/M
3300031996\|Ga0308176_12416941	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300032001\|Ga0306922_10076936	All Organisms → cellular organisms → Bacteria → Acidobacteria	3498	Open in IMG/M
3300032160\|Ga0311301_12540621	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300032205\|Ga0307472_101167136	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	733	Open in IMG/M
3300032782\|Ga0335082_10135039	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2406	Open in IMG/M
3300032828\|Ga0335080_11105266	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300032895\|Ga0335074_11219164	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	632	Open in IMG/M
3300032955\|Ga0335076_11525446	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300033547\|Ga0316212_1007139	All Organisms → cellular organisms → Bacteria → Acidobacteria	1616	Open in IMG/M
3300033982\|Ga0371487_0137454	All Organisms → cellular organisms → Bacteria	1234	Open in IMG/M
3300034091\|Ga0326724_0111248	All Organisms → cellular organisms → Bacteria → Acidobacteria	1772	Open in IMG/M
3300034282\|Ga0370492_0466123	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.58%
Host-Associated	Host-Associated	2.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.06%
Aquatic	Environmental → Aquatic	14.52%
Plants	Host-Associated → Plants	2.42%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.61%
Freshwater	Environmental → Aquatic → Freshwater	11.29%
Peat	Environmental → Terrestrial → Peat	6.45%
Sediment	Environmental → Aquatic → Sediment	3.23%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.81%
Roots	Host-Associated → Plants → Roots	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.71%
Loam	Environmental → Terrestrial → Soil → Loam	12.90%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.29%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.23%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.81%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.68%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.45%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.65%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.84%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.03%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.23%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.23%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.23%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.61%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.84%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.84%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.84%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.03%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.23%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.23%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.23%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.23%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.42%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.42%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.61%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.61%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.61%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.61%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.61%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.61%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.61%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.81%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.81%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.81%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.81%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	0.81%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.81%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001084	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1	Environmental	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009646	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022502	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022504	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023019	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU1	Environmental	Open in IMG/M
3300024179	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK36	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026215	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048 (SPAdes)	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300027080	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF009 (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300029907	I_Bog_N1 coassembly	Environmental	Open in IMG/M
3300029954	I_Bog_N3 coassembly	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030761	Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033547	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1	Host-Associated	Open in IMG/M
3300033982	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fraction	Environmental	Open in IMG/M
3300034091	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12648J13191_10297302	3300001084	Forest Soil	MQDAATHDDSKGQYFWVWGALLVLTAIEVVLGYRQVF
JGI12712J15308_100215033	3300001471	Forest Soil	MHDVAKHDDSKGQYFWVWGALLVLTAVEVVLGYKQIFEPV
Ga0066690_105417201	3300005177	Soil	MHDVATHDDAKGQYFWVWGALLVLTAIEVVLGYKQVFSAV
Ga0066684_102390323	3300005179	Soil	MHDVTAGHGESKAAYLWVWGALLLLTAVEVVLAYKQVLQPVQMLEFL
Ga0066388_1024128312	3300005332	Tropical Forest Soil	MHDVATHDDSKGQYFWVWGALLVLTAIEVVLGYKQVFSPV
Ga0070714_1001073341	3300005435	Agricultural Soil	MHDVSAVNGESKGTYLWVWAALLLLTAVEVVLAYKQVLQPV
Ga0070681_117122121	3300005458	Corn Rhizosphere	MHDVAMHDDAKGQYFWVWGALLVLTAIEVVLGYKQVFSAVRMLEVLLL
Ga0070735_100233215	3300005534	Surface Soil	MHDTTAHDDSKGQYFWVWGALLVLTGIEVVLGYKQIFEPVRM
Ga0070762_105644891	3300005602	Soil	MHDLATHDDSKGQYFWVWGALLVLTGVEVWLGYRQVFE
Ga0070766_106558642	3300005921	Soil	MHTVAADHDKDKSQYFWVWGVLLLLTAVEVALAYK
Ga0070717_102318263	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MHDATTHDDSKGQYFWVWGALLVLTAVEVWLGYRQIFAAVR
Ga0075017_1001599301	3300006059	Watersheds	MHDVETHDDSKGQYFWVWGALLVLTAIEVVLGYKQVFAPVR
Ga0075017_1004251101	3300006059	Watersheds	MHDVAHDDSKGQYFWVWGALLVLTAVEVVLAYKQV
Ga0075014_1005879041	3300006174	Watersheds	MHDTATHDDAKGQYFWVWGALLVLTAIEVVLAYKQVFSAVRMLQV
Ga0070712_1018157981	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MHDVATHDDAKGQYFWVWGALLVLTAIEVVLGYKQVFSA
Ga0070765_1005905491	3300006176	Soil	MHDTATHDTKGQYFWVWAALLVLTAIEVVLGYRQVFSPVRMLEVL
Ga0099829_115577662	3300009038	Vadose Zone Soil	MHDVAKHDDSKGQYFWVWGALLVLTGVEVWLGYNQVFKDPKQMLEVLM
Ga0099830_102712781	3300009088	Vadose Zone Soil	MNNIAATHDESKAQYYWVWGALLVLTGIEVILAYE
Ga0116222_11692511	3300009521	Peatlands Soil	MHDAATHDDSKGQYFWVWGALLVLTAIEVVLGYKQIFEPVR
Ga0116133_10014277	3300009623	Peatland	MHDVATHDDSKGQYFWVWGALLVLTGIEVWLGYRQ
Ga0116132_11219032	3300009646	Peatland	MHDTAADEYSGHDSKAQYFWVWGALLVLTAIEVVLGYKQIFSPVRMLEV
Ga0116224_100165941	3300009683	Peatlands Soil	MHDVATHDDSKGQYFWVWGALLVLTAIEVWLGYRQVFAPV
Ga0116223_100540771	3300009839	Peatlands Soil	MHDVATHDDSKGQYFWVWGALLVLTAIEVWLGYRQV
Ga0116223_100588571	3300009839	Peatlands Soil	MHTIATTHDEGKGQYFWVWGVLLLLTAVEVVLAYR
Ga0126373_115004812	3300010048	Tropical Forest Soil	MHDVAKHDDSKGQYFWVWGALLVLTGAEVWLGYNNQVFH
Ga0126372_114640291	3300010360	Tropical Forest Soil	MHDVATHDDSKGQYFWVWGALLVLTAIEVVLGYKQVFSP
Ga0126379_125426402	3300010366	Tropical Forest Soil	MTKVSYEDCTMHDVAKHDDAKGQYFWVWGALLILTAIEVVLGYKQVFSPVRM
Ga0126361_107777682	3300010876	Boreal Forest Soil	MHDVAKHDDSKGQYFWVWGALLVLTGVEVWLGYKQIFEPVRMLEVLL
Ga0150983_124898944	3300011120	Forest Soil	MHDVSAVHGESKGTYLWVWGALLLLTAVEVVLAYKQVL*
Ga0150983_154920252	3300011120	Forest Soil	MHDTATHDTKGQYFWVWAALLVLTAIEVVLGYRQVFSPVRMLE
Ga0137388_105528071	3300012189	Vadose Zone Soil	MHDATTHDDSKGQYFWVWGALLVLTAIEVWLGYKQIFKAVRMLE
Ga0137377_113603061	3300012211	Vadose Zone Soil	MHETATHDTKGQYFWVWAALLVLTAIEVVLGYRQM
Ga0137361_118097591	3300012362	Vadose Zone Soil	MHDAAAHAVTHDDSKGQYFWVWGALLVLTAIEVVLGYKQIF
Ga0150984_1077379743	3300012469	Avena Fatua Rhizosphere	MHDVAKHDDSKGQYFWVWGALLVLTAIEVVLGYKQVFSAVRMLEVLLP
Ga0137407_122400232	3300012930	Vadose Zone Soil	MHDTATHSDAKGKYFWVWGALLVLTAIEVVLGYQQVFE
Ga0164302_115169391	3300012961	Soil	MHDVAKHDDSKGQYFWVWGALLVLTAIEVVLGYKQVFSPVRMLEV
Ga0181532_107117011	3300014164	Bog	MHDVATHDDSKGQYFWVWGALLVLTGIEVWLGYRQVFEPVRML
Ga0181537_100226331	3300014201	Bog	MHDSADDEFSSHDSKAQYFWVWGALLVLTAVEVVLGYKQIFSPV
Ga0182018_101027871	3300014489	Palsa	MHDTAVHDDSKGQYFWVWGALLFLTVVEIVLAYRQVF
Ga0182018_107076971	3300014489	Palsa	MHDVAKHDDSKGQYFWVWGALLVLTGVEVWLGYRQIFEPVRMLEAL
Ga0182024_114878092	3300014501	Permafrost	MHDVAKHDDSKGQYFWVWGALLVLTGVEVWLGYKQVFE
Ga0134072_100312013	3300015357	Grasslands Soil	MHDVATHDDAKGQYFWVWGALLVLTAIEVVLGYKQVFSAVR
Ga0187818_103957002	3300017823	Freshwater Sediment	MCGFVRWGNRMHDVATHDDTKGQYFWVWGALLVLTAIEVVLGYRQVFTPVRMLEV
Ga0187820_11237861	3300017924	Freshwater Sediment	MHDVATHDDSKGQYFWVWRALLVLTAIEVVLGYKQIFEPVRM
Ga0187824_103860471	3300017927	Freshwater Sediment	MHDVATHDDSKGQYFWVWGALLILTAIEVVLGYKQVFSA
Ga0187819_101292253	3300017943	Freshwater Sediment	MHDVAISHDEGKGQYLWVWGVLLLLTAVEVVLAYKR
Ga0187817_107759262	3300017955	Freshwater Sediment	MHDVAMHDDSKGQYFWVWGALLVLTAIEVMLSYKQVLQP
Ga0187782_1000053619	3300017975	Tropical Peatland	MHDVAVHEDSKGKYFWVWGALLVLTAIEVWLGYRQIFEPVRML
Ga0187782_107662902	3300017975	Tropical Peatland	MHDVAKHDDSKGQYFWVWGALLVLTGIEVWLGYKQVFAPVRMLEVLL
Ga0187860_11524571	3300018014	Peatland	MHDVATHDDSKGQYFWVWGALLVLTAVEVVLAYRQVFQP
Ga0187874_101577911	3300018019	Peatland	MHDVATHDDSKGQYFWVWGALLVLTGIEVWLGYRQVFEPVRMLE
Ga0187863_102823181	3300018034	Peatland	MHDVAHDDSKGQYFWVWGALLVLTAVEVWLGYRQVFEPVRMLEVL
Ga0187766_111790921	3300018058	Tropical Peatland	MHDVATHDDSKGQYFWVWGALLVLTAIEVVLGYKQVFSPVR
Ga0187772_111739011	3300018085	Tropical Peatland	MHIAATEEFTSHDSKGQYFWVWGALLVLTAIEVVLGYK
Ga0187774_106588872	3300018089	Tropical Peatland	MHTVATTHDEGKGQYFWVWGVLLLLTAVEVVLAYK
Ga0187770_111965191	3300018090	Tropical Peatland	MHDVATHDDSKGQYFWVWGALLVLTAIEVILAYRQVFQP
Ga0182025_12337583	3300019786	Permafrost	MHDVAKHDDSKGQYFWVWGALLVLTGVEVWLGYRQIFERCVCWRRC
Ga0193726_11478162	3300020021	Soil	MHDTATHSDAKGKYFWVWGALLVLTAVEVVLGYRQMFEPVRML
Ga0210403_100252091	3300020580	Soil	MHDAATHDDSKGQYFWVWGALLVLTAIEVVLGYKQVFEPVR
Ga0210403_112983771	3300020580	Soil	MHDVAKHDDSKGQYFWVWAALLVLTAIEVVLGYKQVFSAVR
Ga0210403_113094982	3300020580	Soil	LERENPMHDVATHDDSKGQYFWVWGALLLLTGVEVW
Ga0210399_103890253	3300020581	Soil	MHDVAIHDDSKGQYFWVWGALLLLTAIEVVLGYKQVFS
Ga0210400_111150951	3300021170	Soil	MHDATTHDDSKGQYFWVWGALLVLTAVEVWLGYRQIFEAVRMLEV
Ga0210396_103663713	3300021180	Soil	MHDTATHDTKGQYFWVWAALLVLTAIEVVLGYRQVFSPVRMLEV
Ga0210388_108017992	3300021181	Soil	MHDVAKHDDSKGQYFWVWGALLVLTGVEVWLGYRQVFEP
Ga0210394_107342311	3300021420	Soil	MHDVAKHDDSKGQYFWVWGALLVLTGIEVWLGYNQ
Ga0210394_112189642	3300021420	Soil	MHDVAKHDDSKGQYFWVWGALLLLTGVEVWLGYRQVFEPVRMLE
Ga0210384_108976402	3300021432	Soil	MHDVAIHDDSKGQYFWVWGALLLLTAIEVVLGYKQVFSP
Ga0210391_104898782	3300021433	Soil	MHTVAATHDEGKGQYFWVWGVLLLLTAVEVVLAYKQ
Ga0210391_112361052	3300021433	Soil	MHTAAATHDAEAKGQYFWVWGVLLLLTAVEVVLAYRRSLSR
Ga0210390_102361873	3300021474	Soil	MHDVAKHDDSKGQYFWVWGALLLLTGVEVWLGYRQVFEPVRMLEVLL
Ga0210398_101638674	3300021477	Soil	MHDTATHDDSKGQYFWVWGALLVLTAIEVVLAYNQVFEAVR
Ga0210410_106261902	3300021479	Soil	MHEAAHDDSKGQYFWVWGALLVLTAIEVWLGYNQVFKDPRHM
Ga0126371_103268971	3300021560	Tropical Forest Soil	MHDVAKHDDSKGQYFWVWGALLVLTGAEVWLGYNNQVFHGNSAHMLEV
Ga0242646_10192942	3300022502	Soil	LERENPMHDVATHDDSKGQYFWVWGALLLLTGVEVWLGY
Ga0242642_10183032	3300022504	Soil	MHDVGAVHGESKGTYIWVWGALLLLTAVEVVLAYKQVLQPVRMLEVL
Ga0242665_100134581	3300022724	Soil	MHDVGAVHGESKGTYLWVWGALLLLTAVEVVLAYKQVLQPVRMLEVLLVLS
Ga0224560_1002065	3300023019	Soil	MHDVAKHDDSKGQYFWVWGALLFLTGVEVWLGYKQVFEPVR
Ga0247695_10308042	3300024179	Soil	MHDVAKHDDSKGQYFWVWGWLLVLTAIEVVLGYKQVFSPVRM
Ga0207702_107663091	3300026078	Corn Rhizosphere	MHDVAKHDDSKGQYFWVWGWLLVLTAIEVVLGYKQVFSPVRML
Ga0209849_10115063	3300026215	Soil	MHDAAATHDDSKGQYYWVWAALLVLTAVEVVLGYRQIFTPVVMLEVL
Ga0209839_102116212	3300026294	Soil	MHEAAHDDSKGQYFWVWGALLVLTAIEVVLGYKQMFEPVHM
Ga0209472_12507812	3300026323	Soil	MHDAATHDDSKGQYFWVWGALLVLTAVEVWLGYKQVFQPVAM
Ga0209473_11922762	3300026330	Soil	MHDVTAGHGESKATYLWVWGALLLLTAVEVVLAYKQVLQPVQMLEFL
Ga0257160_10624951	3300026489	Soil	MHDVAKHDDSKGQYFWVWGALLVLTAVEVVLGYKQ
Ga0208237_10494392	3300027080	Forest Soil	MHDVAKHDDSKGQYFWVWGALLVLTAIEVWLGYNQVFK
Ga0208043_11274671	3300027570	Peatlands Soil	MHTAAAHHDEGKGQYFWVWGALLLLTAVEVALAYK
Ga0209116_10667362	3300027590	Forest Soil	MHDVAHDDSKGQYFWVWGALLVLTGIEVVLGYRQVFEP
Ga0209221_10892992	3300027609	Forest Soil	MHDVAKHDDSKGQYFWVWGALLVLTGVEVWLGYRQVFEPV
Ga0209625_11330482	3300027635	Forest Soil	MHDVAKHDDSKGQYFWVWGALLVLTAVEVVLGYKQIFEPVHMLE
Ga0209772_100730682	3300027768	Bog Forest Soil	MHTAAATHDAEAKGQYFWVWGVLLLLTAVEVVLAYKRV
Ga0209656_103400662	3300027812	Bog Forest Soil	MHDVAKHDDSKGQYFWVWGALLFLTGVEVWLGYRQVFEPVRM
Ga0209698_112077311	3300027911	Watersheds	MHDTATHDTKGQYFWVWAALLVLTAIEVVLGYRQVFSPVRMLEVLLL
Ga0302228_105438762	3300028808	Palsa	MHDVAKHDDSKGQYFWVWGALLVLTGIEVWLGYKQVFEPVRMLEVLL
Ga0311329_103775681	3300029907	Bog	MHDAATEEFTAHDTKGQYYWVWGALLVLTGIEVWLGYEQVFTPVVMLQ
Ga0311331_110705952	3300029954	Bog	MHDVAKHDDSKGQYFWVWGALLVLTAIEVWLGYRQ
Ga0302306_103495442	3300030043	Palsa	MHDVAKHDDSKGQYFWVWGALLVLTGIEVWLGYKQVFEPVRMLEV
Ga0311372_127681471	3300030520	Palsa	MHDTASDEFSGHDSKAQYFWVWGALLVLTAIEVVLGYKQVFEPVHML
Ga0265722_1062932	3300030761	Soil	MHDVAHDASKGQYFWVWGALLILTAIEVWLGYNNGIMA
Ga0302326_111045441	3300031525	Palsa	MHTAAATHDAEAKGQYFWVWGVLLLLTAVEVVLAYR
Ga0310686_1098056642	3300031708	Soil	MHTAAATHDEGKGQYFWVWGVLLLLTAVEVVLAYR
Ga0310686_1131461812	3300031708	Soil	MHDVATHDDSKGQYFWVWGALLVLTGVEVWLGYRQVFEPVRML
Ga0310686_1182742901	3300031708	Soil	MHDVASDEFTGHDSKAQYFWVWGALVVLTAIEVVLGYKQVFEPVHM
Ga0307476_109118031	3300031715	Hardwood Forest Soil	MHDVAKHDDSKGQYFWVWGALLVLTGIEVWLGYRQVFE
Ga0307474_103875972	3300031718	Hardwood Forest Soil	MHDVAKHDDSKGQYFWVWGALLVLTGVEVWLGYNQFFKDPKQMLEVLMI
Ga0307474_112862692	3300031718	Hardwood Forest Soil	MHDVAKHDDSKGQYFWVWGALLVLTGIEVWLGYRQIFEP
Ga0307469_107788051	3300031720	Hardwood Forest Soil	MHDVAKHDDSKGQYFWVWGALLVLTAIEVILAYKQVFNAVRMLE
Ga0307478_108660292	3300031823	Hardwood Forest Soil	MHDVAKHDDSKGQYFWVWGALLVLTGIEVVLGYNQVFTP
Ga0307478_113310822	3300031823	Hardwood Forest Soil	MHDVAKHDDNKAQYFWVWGALLFLTGVEVWLGYRQMFEPVHM
Ga0307478_115953221	3300031823	Hardwood Forest Soil	MHTAAATHDEGKGQYFWVWGVLLLLTAVEVVLAYKR
Ga0310917_102939211	3300031833	Soil	MHDIATHDDSKGQYFWVWVALLILTAIEVVLGYKQVFSPVRMLEV
Ga0310909_103937913	3300031947	Soil	MHDIATHDDSKGQYFWVWAALLILTAIEVVLGYKQVFSPVRML
Ga0308176_124169412	3300031996	Soil	MHDVATHDDAKGQYFWVWGALLVLTAIEVVLGYKQ
Ga0306922_100769364	3300032001	Soil	MHDVAKHDDTKGQYFWVWGGLLALTAIEVWLGYNNQIMTAVHM
Ga0311301_125406211	3300032160	Peatlands Soil	MHDVAKHDDSKGQYFWVWGALLVLTGAEVWLGYNSQVFHGN
Ga0307472_1011671362	3300032205	Hardwood Forest Soil	MHDTATHDTKGQYFWVWAALLVLTAIEVVLGYKQV
Ga0335082_101350394	3300032782	Soil	MHDTAAHDDSKGQYFWVWGALLVLTAIEVVLGYKQVFSAVRML
Ga0335080_111052661	3300032828	Soil	MHTVDAHHDESKSQYFWVWGILLVLTAAEVALAYNQV
Ga0335074_112191641	3300032895	Soil	MHDVAIHDDSKGRYFWVWGALLVLTAIEVVLAYRQVFEAVRMLE
Ga0335076_115254462	3300032955	Soil	MHDVATHDDSKGQYFWVWGALLVLTAIEVVLAYKQVFQAARMLE
Ga0316212_10071393	3300033547	Roots	MTHDAATHDDSKGQYFWVWGALLVLTAIEVVLAYRQ
Ga0371487_0137454_3_125	3300033982	Peat Soil	MHDVATEEFTSHDSKGQYFWVWGALLFLTAIEVWLGYRQIF
Ga0326724_0111248_2_130	3300034091	Peat Soil	MHDVATEEFTSHDSKGQYFWVWGALLFLTAIEVWLGYRQIFEP
Ga0370492_0466123_384_512	3300034282	Untreated Peat Soil	MHDVAKHDDSKGQYFWVWGALLVLTGIEVWLGYKQVFEPVRML

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069186

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences