Metagenome / Metatranscriptome Family F069185

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069185
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	44 residues
Representative Sequence	PHELTPACKAAGVKLFPSWQFGADPPKEGVLSLEALRDKTGCSLP
Number of Associated Samples	105
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.81 %
% of genes near scaffold ends (potentially truncated)	99.19 %
% of genes from short scaffolds (< 2000 bps)	88.71 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (9.677 % of family members)
Environment Ontology (ENVO)	Unclassified (25.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.452 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.03% β-sheet: 0.00% Coil/Unstructured: 73.97%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF07884	VKOR	83.06
PF00756	Esterase	9.68
PF09594	GT87	3.23
PF00781	DAGK_cat	0.81
PF01740	STAS	0.81
PF00365	PFK	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG4243	Vitamin K epoxide reductase (VKOR) family protein, predicted involvement in disulfide bond formation	General function prediction only [R]	83.06
COG1597	Phosphatidylglycerol kinase, diacylglycerol kinase family	Lipid transport and metabolism [I]	1.61
COG0205	6-phosphofructokinase	Carbohydrate transport and metabolism [G]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	73.39 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.81 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	46.77 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.61 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.81 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	46.77 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.61 %
Patescibacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group	0.81 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	46.77 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.61 %
Parcubacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group	0.81 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	46.77 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.61 %
Candidatus Parcubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria	0.81 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100558887	All Organisms → cellular organisms → Bacteria	2456	Open in IMG/M
3300000567\|JGI12270J11330_10299095	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300002245\|JGIcombinedJ26739_100699721	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300004091\|Ga0062387_101061096	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	625	Open in IMG/M
3300004092\|Ga0062389_102441109	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300004152\|Ga0062386_100931481	All Organisms → cellular organisms → Bacteria → Acidobacteria	718	Open in IMG/M
3300004633\|Ga0066395_10626684	All Organisms → cellular organisms → Bacteria → Acidobacteria	632	Open in IMG/M
3300004635\|Ga0062388_101289382	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	728	Open in IMG/M
3300005434\|Ga0070709_10108485	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1862	Open in IMG/M
3300005529\|Ga0070741_10739246	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300005541\|Ga0070733_10077005	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2107	Open in IMG/M
3300005541\|Ga0070733_10663941	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	700	Open in IMG/M
3300005541\|Ga0070733_11187786	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300005560\|Ga0066670_10616493	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	660	Open in IMG/M
3300005591\|Ga0070761_10150398	All Organisms → cellular organisms → Bacteria	1364	Open in IMG/M
3300005598\|Ga0066706_11060723	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300005610\|Ga0070763_10051100	All Organisms → cellular organisms → Bacteria	1966	Open in IMG/M
3300005921\|Ga0070766_10924329	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598	Open in IMG/M
3300006052\|Ga0075029_101310139	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300006059\|Ga0075017_101330860	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300006086\|Ga0075019_11008370	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300006162\|Ga0075030_100121522	All Organisms → cellular organisms → Bacteria	2122	Open in IMG/M
3300006162\|Ga0075030_101549490	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300006174\|Ga0075014_100593279	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300006176\|Ga0070765_101096668	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria	752	Open in IMG/M
3300006176\|Ga0070765_101333434	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300006800\|Ga0066660_11671851	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300007982\|Ga0102924_1253528	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	725	Open in IMG/M
3300009137\|Ga0066709_100001285	All Organisms → cellular organisms → Bacteria	16237	Open in IMG/M
3300009137\|Ga0066709_100869091	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1312	Open in IMG/M
3300009616\|Ga0116111_1132486	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300009672\|Ga0116215_1462760	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
3300009700\|Ga0116217_10365124	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	920	Open in IMG/M
3300010343\|Ga0074044_10371633	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300010376\|Ga0126381_100084928	All Organisms → cellular organisms → Bacteria → Acidobacteria	3997	Open in IMG/M
3300012203\|Ga0137399_11310098	All Organisms → cellular organisms → Bacteria → Acidobacteria	609	Open in IMG/M
3300012207\|Ga0137381_10865333	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	782	Open in IMG/M
3300012961\|Ga0164302_11701663	All Organisms → cellular organisms → Bacteria → Acidobacteria	529	Open in IMG/M
3300012971\|Ga0126369_11294961	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	819	Open in IMG/M
3300014501\|Ga0182024_11712644	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	707	Open in IMG/M
3300014501\|Ga0182024_12629892	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300014501\|Ga0182024_12629897	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300015245\|Ga0137409_10804596	All Organisms → cellular organisms → Bacteria → Acidobacteria	775	Open in IMG/M
3300016270\|Ga0182036_11067808	All Organisms → cellular organisms → Bacteria → Acidobacteria	668	Open in IMG/M
3300017822\|Ga0187802_10292462	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	634	Open in IMG/M
3300017927\|Ga0187824_10255827	All Organisms → cellular organisms → Bacteria → Acidobacteria	609	Open in IMG/M
3300017933\|Ga0187801_10524279	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300017972\|Ga0187781_11360207	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300018025\|Ga0187885_10505985	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300018086\|Ga0187769_10773429	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	726	Open in IMG/M
3300018088\|Ga0187771_10033822	All Organisms → cellular organisms → Bacteria → Acidobacteria	3907	Open in IMG/M
3300018088\|Ga0187771_11783286	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300018088\|Ga0187771_11837486	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300020579\|Ga0210407_10670596	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	805	Open in IMG/M
3300020579\|Ga0210407_10869632	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	692	Open in IMG/M
3300020583\|Ga0210401_11352223	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	570	Open in IMG/M
3300021401\|Ga0210393_10726528	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	809	Open in IMG/M
3300021404\|Ga0210389_10843820	All Organisms → cellular organisms → Bacteria → Acidobacteria	715	Open in IMG/M
3300021406\|Ga0210386_10484710	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M
3300021420\|Ga0210394_10567400	All Organisms → cellular organisms → Bacteria → Acidobacteria	998	Open in IMG/M
3300021560\|Ga0126371_13273657	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
3300024225\|Ga0224572_1080518	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300025134\|Ga0207416_1037170	All Organisms → cellular organisms → Bacteria → Acidobacteria	2198	Open in IMG/M
3300025406\|Ga0208035_1076614	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
3300025898\|Ga0207692_10804226	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300026316\|Ga0209155_1220629	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300027334\|Ga0209529_1087661	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300027795\|Ga0209139_10015029	All Organisms → cellular organisms → Bacteria → Acidobacteria	2831	Open in IMG/M
3300027812\|Ga0209656_10522315	All Organisms → cellular organisms → Bacteria → Acidobacteria	516	Open in IMG/M
3300027821\|Ga0209811_10376091	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300027853\|Ga0209274_10650174	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300027855\|Ga0209693_10253272	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	862	Open in IMG/M
3300027867\|Ga0209167_10392102	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	757	Open in IMG/M
3300027884\|Ga0209275_10320280	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300027889\|Ga0209380_10265763	All Organisms → cellular organisms → Bacteria → Acidobacteria	1008	Open in IMG/M
3300027898\|Ga0209067_10086831	All Organisms → cellular organisms → Bacteria → Acidobacteria	1616	Open in IMG/M
3300027911\|Ga0209698_10955495	All Organisms → cellular organisms → Bacteria → Acidobacteria	640	Open in IMG/M
3300028731\|Ga0302301_1103595	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	728	Open in IMG/M
3300028789\|Ga0302232_10129407	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1280	Open in IMG/M
3300028906\|Ga0308309_10952861	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	744	Open in IMG/M
3300028906\|Ga0308309_11795681	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300029636\|Ga0222749_10646826	All Organisms → cellular organisms → Bacteria → Acidobacteria	578	Open in IMG/M
3300029911\|Ga0311361_10797731	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300029913\|Ga0311362_10145888	All Organisms → cellular organisms → Bacteria → Acidobacteria	2905	Open in IMG/M
3300029952\|Ga0311346_11212509	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300029954\|Ga0311331_11009899	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	721	Open in IMG/M
3300030007\|Ga0311338_11273985	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	692	Open in IMG/M
3300030011\|Ga0302270_10386768	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	749	Open in IMG/M
3300030020\|Ga0311344_10085597	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3657	Open in IMG/M
3300030043\|Ga0302306_10104323	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300030045\|Ga0302282_1204981	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	744	Open in IMG/M
3300030490\|Ga0302184_10141382	All Organisms → cellular organisms → Bacteria	1051	Open in IMG/M
3300030494\|Ga0310037_10309326	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	671	Open in IMG/M
3300030524\|Ga0311357_10229291	All Organisms → cellular organisms → Bacteria	1804	Open in IMG/M
3300030580\|Ga0311355_11759581	All Organisms → cellular organisms → Bacteria → Acidobacteria	527	Open in IMG/M
3300030693\|Ga0302313_10068437	All Organisms → cellular organisms → Bacteria	1518	Open in IMG/M
3300031234\|Ga0302325_11096261	All Organisms → cellular organisms → Bacteria	1073	Open in IMG/M
3300031234\|Ga0302325_12742918	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300031249\|Ga0265339_10500584	All Organisms → cellular organisms → Bacteria → Acidobacteria	561	Open in IMG/M
3300031344\|Ga0265316_10225085	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1383	Open in IMG/M
3300031474\|Ga0170818_105204582	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300031525\|Ga0302326_10041885	All Organisms → cellular organisms → Bacteria → Acidobacteria	8912	Open in IMG/M
3300031525\|Ga0302326_10775379	All Organisms → cellular organisms → Bacteria	1386	Open in IMG/M
3300031708\|Ga0310686_116999477	All Organisms → cellular organisms → Bacteria	3756	Open in IMG/M
3300031715\|Ga0307476_10265576	All Organisms → cellular organisms → Bacteria	1255	Open in IMG/M
3300031715\|Ga0307476_10595860	All Organisms → cellular organisms → Bacteria → Acidobacteria	819	Open in IMG/M
3300031715\|Ga0307476_10646910	All Organisms → cellular organisms → Bacteria → Acidobacteria	784	Open in IMG/M
3300031718\|Ga0307474_10628074	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	847	Open in IMG/M
3300031718\|Ga0307474_11216424	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	595	Open in IMG/M
3300031753\|Ga0307477_10388868	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	956	Open in IMG/M
3300031753\|Ga0307477_10897191	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	585	Open in IMG/M
3300031823\|Ga0307478_10070563	All Organisms → cellular organisms → Bacteria	2640	Open in IMG/M
3300031823\|Ga0307478_11408291	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300031954\|Ga0306926_11184638	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300032076\|Ga0306924_10871002	All Organisms → cellular organisms → Bacteria → Acidobacteria	999	Open in IMG/M
3300032829\|Ga0335070_10219367	All Organisms → cellular organisms → Bacteria → Acidobacteria	1883	Open in IMG/M
3300032892\|Ga0335081_11451935	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	763	Open in IMG/M
3300032898\|Ga0335072_11026870	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	753	Open in IMG/M
3300033134\|Ga0335073_10879083	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300033158\|Ga0335077_10468489	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1339	Open in IMG/M
3300034124\|Ga0370483_0000417	All Organisms → cellular organisms → Bacteria → Acidobacteria	12138	Open in IMG/M
3300034124\|Ga0370483_0120068	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	873	Open in IMG/M
3300034163\|Ga0370515_0195801	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300034282\|Ga0370492_0160594	All Organisms → cellular organisms → Bacteria → Acidobacteria	918	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.58%
Host-Associated	Host-Associated	2.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.84%
Aquatic	Environmental → Aquatic	17.74%
Plants	Host-Associated → Plants	2.42%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.52%
Peat	Environmental → Terrestrial → Peat	15.32%
Freshwater	Environmental → Aquatic → Freshwater	9.68%
Sediment	Environmental → Aquatic → Sediment	6.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.42%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.61%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.29%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	15.32%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	14.52%
Loam	Environmental → Terrestrial → Soil → Loam	13.71%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.45%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.61%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	15.32%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.52%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	12.10%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.29%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.45%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.84%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.42%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.42%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.61%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.61%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	9.68%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	8.87%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.26%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.45%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.84%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.84%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	4.84%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.03%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.03%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.23%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	3.23%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.42%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.42%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	2.42%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.61%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.61%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.61%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.81%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.81%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009616	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300025134	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG (SPAdes)	Environmental	Open in IMG/M
3300025406	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300027334	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028731	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029952	II_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029954	I_Bog_N3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030011	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_3	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030045	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_3	Environmental	Open in IMG/M
3300030490	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030693	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_2	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031249	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG	Host-Associated	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1005588874	3300000364	Soil	EENPHDLTPTCKAAGVKLFPSWQFGADPPKEGVLSLEALSEKTGCRLP*
JGI12270J11330_102990952	3300000567	Peatlands Soil	APECKIAGTKLFPSWQFGTNPPKEGVLSLSELADKTGCRLP*
JGIcombinedJ26739_1006997211	3300002245	Forest Soil	CKAAGVKLFPSWQFGNNPPKEGVLSLEELRDKTGCSLQ*
Ga0062387_1010610962	3300004091	Bog Forest Soil	ECAAAKVKLFPSWQFGTNPPKEGVFPLDELSDKTGCALP*
Ga0062389_1024411091	3300004092	Bog Forest Soil	AECAIKGSKELAPECKAAGVKLFPSWQFGANPPVEGVFPMQELSDKTGCSLP*
Ga0062386_1009314811	3300004152	Bog Forest Soil	VKGSRELADECKIAGAKLFPSWQFGMEPPKEGVLSLEALSDKTGCSLP*
Ga0066395_106266841	3300004633	Tropical Forest Soil	QCKAAGVKLFPSWQFGQDPPKEGVLTLQDLSQKTGCGLP*
Ga0062388_1012893821	3300004635	Bog Forest Soil	TECAIKGSPEMAAECRVAGVKLFPSWQFGMDPPKEGVLSLEALSDKTGCKLP*
Ga0070709_101084854	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	PECKVAGAKLFPSWQFGMDPPKEGILSMETLSDKTGCSLP*
Ga0070741_107392463	3300005529	Surface Soil	QECALKEKPGEMAPQCKAAGVKLFPSWQFGSNAPTEGVFSLDELSDKTGCSLP*
Ga0070733_100770051	3300005541	Surface Soil	APVCKMADVKLFPSWQFGVEPPKEGILSLQALSDKTGCALP*
Ga0070733_106639411	3300005541	Surface Soil	ELTPECKAAGVKLFPSWQFGTNPPVEGIFPMQELSDKTGCSLP*
Ga0070733_111877862	3300005541	Surface Soil	AIKGSPGVLAPECRIAGVKLFPSWQFGTEPPKEGVLSLSALSDKTGCSLP*
Ga0066670_106164932	3300005560	Soil	DNPHEITPECKIAGVKLFPSWQFGTESPKEGVLSLDALSDKTGCSLP*
Ga0070761_101503981	3300005591	Soil	CAIKGSNQLRPACAAAGVKLFPSWQFGTAQPIAGVFPLEELSDKTGCSLP*
Ga0066706_110607232	3300005598	Soil	ECASENDPHELTPACKAVGVKLFPSWQFGADPPKEGVLTLQELSQKTGCSLP*
Ga0070763_100511001	3300005610	Soil	AATKDETPECKAGGLKLFPSWQFGTEPPKEGVLSLEALSDKTGCSLP*
Ga0070766_109243291	3300005921	Soil	AAGVKLFPSWQFGGNPPIEGVFPLQVLGSQTGCSLP*
Ga0075029_1013101391	3300006052	Watersheds	GSSELQPECKIAGVKLFPSWQFSDEPPKEGVLSLAALSDKTGCSLP*
Ga0075017_1013308602	3300006059	Watersheds	AGVKLFPSWQFGDESPKEGVLSMEALSDKTGCSLP*
Ga0075019_110083702	3300006086	Watersheds	ECASENDPHELTPACKAAGVKLFPSWQFGADPPKEGVLTLQELSQKTGCGLP*
Ga0075030_1001215224	3300006162	Watersheds	AGVKLFPSWQFGMEAPKEGVLSLDALSDKTGCSLP*
Ga0075030_1015494902	3300006162	Watersheds	GSSELQPECKIAGVKLFPSWQFSDEPPKEGVLSLEALSDKTGCSLP*
Ga0075014_1005932791	3300006174	Watersheds	VKGSTEEAAECKIAGVKMFPSWQFGMESPKEGVLSLDALGDKTGCSLP*
Ga0070765_1010966681	3300006176	Soil	AAGVKLFPSWQFGANPPKEGVFPLEELSDKTGCALP*
Ga0070765_1013334341	3300006176	Soil	APECTAAKVKLFPSWQFGASPPKEGVFPLNELSDKTGCSLP*
Ga0066660_116718511	3300006800	Soil	SENDPHELTPACKAVGVKLFPSWQFGADPPKEGVLTLQELSQKTGCSLP*
Ga0102924_12535281	3300007982	Iron-Sulfur Acid Spring	REEATECKVAGVKLFPSWQFGMDPPREGVLSLEALSDKTGCSLP*
Ga0066709_10000128515	3300009137	Grasslands Soil	QECAIKGSREMAPECKAAGAKNFPSWQFEGAPIHEGVLPLEDLSQRTGCSLP*
Ga0066709_1008690913	3300009137	Grasslands Soil	EEAAVCKIAGVKLFPSWQFAGEQPKEGVLSLEALSDKTGCSLP*
Ga0116111_11324862	3300009616	Peatland	CKIAGVKLFPSWQFGMEPPKEGVLSLEALSDKTGCNLP*
Ga0116215_14627601	3300009672	Peatlands Soil	IKGSSEMAPECKIAGTKLFPSWQFGTNPPKEGVLSLSELADKTGCRLP*
Ga0116217_103651241	3300009700	Peatlands Soil	AGVKLFPSWQFGTNPPKEGVFPLQELSDKTGCSLP*
Ga0074044_103716333	3300010343	Bog Forest Soil	QAAGVKLFPSWQFGSNLPVEGVFPMQELSDKTGCSLP*
Ga0126381_1000849286	3300010376	Tropical Forest Soil	KDKPGELAPACKAAGVKLFPSWQFAGEQPREGVLSLEALSDKTGCSLP*
Ga0137399_113100981	3300012203	Vadose Zone Soil	LAPACTAAGVKLFPSWQFGANKPIEGVFPMEELRDKTGCVLP*
Ga0137381_108653331	3300012207	Vadose Zone Soil	SSSEEDSVCKIAGVKLFPSWQFGQEPPKEGVLSMEALSDKTGCALP*
Ga0164302_117016631	3300012961	Soil	ASENDPHELTAACKAAGAKLFPSWQFGSDPPKEGVLSMEELSQKTGCSLP*
Ga0126369_112949611	3300012971	Tropical Forest Soil	KDKPGELAPACKAAGVKLFPSWQFAGEAPREGVLSMEALSDKTGCSLP*
Ga0182024_117126442	3300014501	Permafrost	GVKLFPSWQFGANKPTEGVFPLEELSDKTGCSLP*
Ga0182024_126298922	3300014501	Permafrost	CAIKGSKELAAECKMAGVKLFPSWQFGMEPPKEGVLSLEALSDKTGCSLP*
Ga0182024_126298972	3300014501	Permafrost	CAIKGSKELAAECKMAGVKLFPSWQFGMEPPKEGVLSLEALGDKTGCSLP*
Ga0137409_108045961	3300015245	Vadose Zone Soil	HELTAACKAAGVKLFPSWQFGSDPPKEGVLSLQELSQKTGCSLP*
Ga0182036_110678081	3300016270	Soil	PHELTPACKAAGVKLFPSWQFGADPPKEGVLSLEALRDKTGCSLP
Ga0187802_102924621	3300017822	Freshwater Sediment	IKGSTEMAPECKLAGTKLFPSWQFGTDRPKEGVLSLSELADKTGCHLP
Ga0187824_102558272	3300017927	Freshwater Sediment	AIRGSRELAPECKTAGVKLFPSWQFGSDPPKEGVLSLEELSHKSGCSLP
Ga0187801_105242792	3300017933	Freshwater Sediment	PGSGQMQPVCQAAGVKLFPSWQFGAAPPKEGVLSLEELSARTGCSLP
Ga0187781_113602071	3300017972	Tropical Peatland	KAAGVKLFPSWQFGSDPPKEGVLSLRALSDKTGCSLP
Ga0187885_105059852	3300018025	Peatland	AIKGSSEMAPECKAAGLKLFPSWQFGTEPPKEGVLPLEELSEKTGCSLP
Ga0187769_107734291	3300018086	Tropical Peatland	RELTPACQAAGVKHFPTWQFGANAQPVEGVFPIEELSDKTGCSLQ
Ga0187771_100338225	3300018088	Tropical Peatland	LAPECKIAGAKLFPSWQFGMEPPKEGVLSLEALSDKTGCSLP
Ga0187771_117832862	3300018088	Tropical Peatland	ELAPTCKIAGAKLFPSWQLGTDPPKEGVLSLEALSDKTGCSLP
Ga0187771_118374861	3300018088	Tropical Peatland	IKGSKELAPECKVAGVKLFPSWQFGMDPPKEGVLSLEALSDKTGCSLP
Ga0210407_106705963	3300020579	Soil	KAAGVKLFPSWQFGNNPPKEGVLSLEELGDKTGCSLP
Ga0210407_108696321	3300020579	Soil	VPACKIAGIKLFPSWQFGMETPKEGVLSLEALSDKTGCSLP
Ga0210401_113522232	3300020583	Soil	HGETAECKAAGVKLFPSWQFGNNPPKEGVLSLEELGDKTGCSLP
Ga0210393_107265283	3300021401	Soil	PELVPACKVAGIKLFPSWQFGMDPPKEGVLSLDALSDKTGCSLP
Ga0210389_108438201	3300021404	Soil	CASENDPHELTPACKAAGVKLFPSWQFGADPPKEGVLTLQELSQKTGCSLP
Ga0210386_104847101	3300021406	Soil	NDPHELTPACKAAGVKLFPSWQFGAEPPKEGVLTLQELSQKTGCSLP
Ga0210394_105674001	3300021420	Soil	AGPHGETAECKAAGVKLFPSWQFGNNPPKEGVLSLEELGDKTGCSLP
Ga0126371_132736571	3300021560	Tropical Forest Soil	KDKPGELAPACKAAGVKLFPSWQFAGEQPREGVLSLEALSDKTGCSLP
Ga0224572_10805181	3300024225	Rhizosphere	CAIKGSREMTAACKAAGVQHYPTWQFGASPLVEGKFPLQELSDKTGCSLP
Ga0207416_10371704	3300025134	Iron-Sulfur Acid Spring	VKGVNGITSECKAAGVKLFPSWQFGTNPPKEGVFPLEELSDKTGCTLP
Ga0208035_10766142	3300025406	Peatland	DECKAAGVKLFPSWQFGNNPPKEGVLSLDELRDKTGCSLP
Ga0207692_108042262	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	ALKEIPGEMAPQCKAAGVKLFPSWQFGSNAPIEGVFSLDELSDKTACSLP
Ga0209155_12206292	3300026316	Soil	ECALKEKPGEMAPQCKAAGVKLFPSWQFGSNPPTEGVFSLDELSDKTGCSLP
Ga0209529_10876611	3300027334	Forest Soil	KEEAAECKVAGVKLFPSWQFGMEPPKEGVLSLEALSDKTGCSLP
Ga0209139_100150291	3300027795	Bog Forest Soil	YTECAIKGSHDITAECKAAGIKLFPSWQFGANPPVPSVFPLEVLSAQTGCSLP
Ga0209656_105223152	3300027812	Bog Forest Soil	NSREMAPACKAAGVQHFPTWQFGAGPLVEGKFPMQELSDKTGCSLP
Ga0209811_103760911	3300027821	Surface Soil	ELTAACKAAGAKLFPSWQFGSDPPKEGVLSMEELSQKTGCSLP
Ga0209274_106501742	3300027853	Soil	REMAPACKAAGVQHYPTWQFGASPLVEGKFPLQELSDKTGCSLP
Ga0209693_102532721	3300027855	Soil	AATKDETPECKAGGLKLFPSWQFGTEPPKEGVLSLEALSDKTGCSLP
Ga0209167_103921021	3300027867	Surface Soil	VECAIKGSRELTPECKAAGVKLFPSWQFGTNPPVEGIFPMQELSDKTGCSLP
Ga0209275_103202801	3300027884	Soil	QAAGVKLFPSWQFGANPPKEGVFPLEELSDKTGCALP
Ga0209380_102657633	3300027889	Soil	VAGIKLFPSWQFGFDPPKEGVLSLEALSDKTGCSLP
Ga0209067_100868313	3300027898	Watersheds	ELTPDCKAAGVKLFPSWQFGSDPPKEGVLSLQDLSQKTGCSLP
Ga0209698_109554951	3300027911	Watersheds	ELTPACKAAGVKLFPSWQFGADPPKEGVLTLQELSQKTGCGLP
Ga0302301_11035951	3300028731	Palsa	AAGVKLFPSWQFGANPPKEGVFPLEELADKTGCSLQ
Ga0302232_101294071	3300028789	Palsa	KAAGVKLFPSWQFGANPPKEGVFPLEELADKTGCSLQ
Ga0308309_109528613	3300028906	Soil	AAGVKLFPSWQFGANPPKEGVFPLEELSDKTGCALP
Ga0308309_117956812	3300028906	Soil	ECAAGVHGETAECKAAGVKLFPSWQFGNNPPKEGVLSLEELGDKTGCSLP
Ga0222749_106468262	3300029636	Soil	VHYVECAIKGSKELAPECKAAGVKLFPAWQFGANPPVEGVFPMEELSDKTGCALP
Ga0311361_107977311	3300029911	Bog	CKAAGVKLFPSWQFGSNRPTEGVFPLNELSDKTGCSLP
Ga0311362_101458884	3300029913	Bog	KAAGVKLFPSWQFGSNKPIEGVFPLEELRDKTGCSLP
Ga0311346_112125091	3300029952	Bog	SRQLAPVCAAAGVKLFPSWQFGANPPKEGVFELEELSDKTGCTLP
Ga0311331_110098991	3300029954	Bog	CAAAGVKLFPSWQFGANPPKEGVFELEELSDKTGCTLP
Ga0311338_112739851	3300030007	Palsa	SPHQLTDECKAAGVKLFPSWQFGNNPPKEGVLSLEELRDKTGCSLP
Ga0302270_103867681	3300030011	Bog	KGSREMTPACKAANVEHFPTWQFGAGPLVEGKFPLQELSDKTGCSLP
Ga0311344_100855971	3300030020	Bog	AANVQHFPSWQFGDGPLVENVFPLEELSDKTGCSLP
Ga0302306_101043231	3300030043	Palsa	KDETPECKAGGLKLFPSWQFGTAPPKEGVLSLEALSDKTGCSLP
Ga0302282_12049813	3300030045	Fen	KAANVEHFPTWQFGAGPLVEGKFPLQELSDKTGCSLP
Ga0302184_101413821	3300030490	Palsa	KGSHELAPACKAAGVKLFPSWQFGANPPKEGVFPLEELADKTGCSLQ
Ga0310037_103093261	3300030494	Peatlands Soil	SSEMAPECKIAGTKLFPSWQFGTNPPKEGALSLGELADKTGCRLP
Ga0311357_102292911	3300030524	Palsa	AGVKLFPSWQFGNNPPKEGVLSLEELGDKTGCSLP
Ga0311355_117595812	3300030580	Palsa	ECAIKGSHELAPACQAAGVKFFPSWQFGTNPPIEGVFPMQELSDKTGCSLP
Ga0302313_100684373	3300030693	Palsa	IKGASGITAECKAAGVKLFPSWQFGANPPKEGVFPMEELSDKTGCPLP
Ga0302325_110962613	3300031234	Palsa	HGEAAECKAAGVKLFPSWQFGNNPPKEGVLSLEELGDKTGCSLP
Ga0302325_127429181	3300031234	Palsa	YQECAIKGSPHQLTDECKAAGVKLFPSWQFGNNPPKEGVLSLEELRDKTGCSLP
Ga0265339_105005842	3300031249	Rhizosphere	ELAPACKAAGVKLFPSWQFGNEAPKEGVLSLEALSDKTGCALP
Ga0265316_102250853	3300031344	Rhizosphere	HYEECGIVETHEETPACKIQGIKLFPSWQFGTDPPREGVLSMESLSERTGCSLP
Ga0170818_1052045822	3300031474	Forest Soil	VECAIKGSSELAPECKVAGAKLFPSWQFGMDPPKEGILSMEALSDKTGCSLP
Ga0302326_100418858	3300031525	Palsa	HDEAPECKAAGAKLFPSWQFGSDPPKEGVLRLEQLSEKTGCGLP
Ga0302326_107753793	3300031525	Palsa	EGLHGETAECKAAGVKLFPSWQFGNNPPKEGVLSLEELGDKTGCSLP
Ga0310686_1169994774	3300031708	Soil	MTAACKAAGVQHYPTWQFGAGPLVEGKFPLQELSDKTGCSLP
Ga0307476_102655763	3300031715	Hardwood Forest Soil	ECAIKGTSELATACKIAGVKLFPSWQFGAEPPKEGVLSLDALSDKTGCALP
Ga0307476_105958601	3300031715	Hardwood Forest Soil	EEATECKVAGVKLFPSWQFGMEPPKEGVLSLEALSDKTGCSLP
Ga0307476_106469101	3300031715	Hardwood Forest Soil	PHELTPACKAAGVKLFPSWQFGADPPKEGVLTLQELSQKTGCSLP
Ga0307474_106280741	3300031718	Hardwood Forest Soil	KAAGLKLFPSWQFGVQPPKEGVLPLEELSEKTGCSLP
Ga0307474_112164241	3300031718	Hardwood Forest Soil	HELAAACTAAGVKLFPSWQFGSNKPIEGVFPMQELSDKTGCSLP
Ga0307477_103888683	3300031753	Hardwood Forest Soil	HELTPACKAAGVKLFPSWQFGADPPKEGVLTLQELSQKTGCSLP
Ga0307477_108971911	3300031753	Hardwood Forest Soil	VECAIKGSREMSAACTAAGVHNFPSWQFGNGPLVEAVFPLQELSDKTGCSLP
Ga0307478_100705634	3300031823	Hardwood Forest Soil	KAAGVKLFPSWQFGPNPPIEGVFPLQELSDKTGCSLP
Ga0307478_114082912	3300031823	Hardwood Forest Soil	AGVKLFPSWQFGANPPIEGVFPLQELSDKTGCSLP
Ga0306926_111846383	3300031954	Soil	DKPGELAPECKAAGVKLFPSWQFGSDPPKEGVLELQSLSDKTGCSLP
Ga0306924_108710021	3300032076	Soil	PHELGPVCKAAGVKLFPSWQFGTDPPKEGVLTLEALSQKTGCSLP
Ga0335070_102193674	3300032829	Soil	AGVKLFPSWQFGTDPPKEGVLSLHDLSAKTGCTLP
Ga0335081_114519353	3300032892	Soil	KGSSELQPQCKIAGAKLFPAWQFGMDPPKEGVLSLEALSDKTGCSLP
Ga0335072_110268701	3300032898	Soil	CALSHTEETPECKAAGVEHFPSWQFGSEPPKEGVLSLDALSDKTGCSLP
Ga0335073_108790833	3300033134	Soil	TPCKIAGVKLFPTWQFGNEPPKEGVLSLDAISDKTGCKLP
Ga0335077_104684891	3300033158	Soil	APVCQAAGIKLFPSWQFGTEQPKEGVLSLEELSAKTGCRLP
Ga0370483_0000417_12004_12138	3300034124	Untreated Peat Soil	SGITAECKAAGVKLFPSWQFGANPPKEGVFPLEELSDKTGCPLP
Ga0370483_0120068_2_148	3300034124	Untreated Peat Soil	VKGVSGITAECKAAGVKLFPSWQFGTNPPTPGVFPMQELSDKTGCSLP
Ga0370515_0195801_1_111	3300034163	Untreated Peat Soil	AAGVKLFPSWQFGNNPPKEGVLSLEELGDKTGCSLP
Ga0370492_0160594_2_160	3300034282	Untreated Peat Soil	QECAIKGSSEVAPPCKIAGVKLFPSWQFGVEPPKEGVLSLDALSDKTGCSLP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069185

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences