NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F069154

Metagenome / Metatranscriptome Family F069154

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F069154
Family Type Metagenome / Metatranscriptome
Number of Sequences 124
Average Sequence Length 58 residues
Representative Sequence MTADGANQASTRGRRATVSSGDPILTSKITPPDVPHWAVPRPRITKLIAEGTRWCPLTIV
Number of Associated Samples 112
Number of Associated Scaffolds 124

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 99.17 %
% of genes near scaffold ends (potentially truncated) 96.77 %
% of genes from short scaffolds (< 2000 bps) 94.35 %
Associated GOLD sequencing projects 109
AlphaFold2 3D model prediction Yes
3D model pTM-score0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (59.677 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(25.000 % of family members)
Environment Ontology (ENVO) Unclassified
(24.194 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(38.710 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 19.32%    β-sheet: 0.00%    Coil/Unstructured: 80.68%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.30
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 124 Family Scaffolds
PF00196GerE 33.87
PF02627CMD 33.06
PF00282Pyridoxal_deC 1.61
PF13365Trypsin_2 1.61
PF09851SHOCT 0.81
PF00441Acyl-CoA_dh_1 0.81
PF13193AMP-binding_C 0.81
PF14542Acetyltransf_CG 0.81
PF00732GMC_oxred_N 0.81
PF11258DUF3048 0.81

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 124 Family Scaffolds
COG0599Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase familyGeneral function prediction only [R] 33.06
COG2128Alkylhydroperoxidase family enzyme, contains CxxC motifInorganic ion transport and metabolism [P] 33.06
COG0076Glutamate or tyrosine decarboxylase or a related PLP-dependent proteinAmino acid transport and metabolism [E] 1.61
COG1960Acyl-CoA dehydrogenase related to the alkylation response protein AidBLipid transport and metabolism [I] 0.81
COG2303Choline dehydrogenase or related flavoproteinLipid transport and metabolism [I] 0.81


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms59.68 %
UnclassifiedrootN/A40.32 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2189573001|GZR05M102GM6U1Not Available503Open in IMG/M
3300004635|Ga0062388_101260679All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia735Open in IMG/M
3300005171|Ga0066677_10129038All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1367Open in IMG/M
3300005179|Ga0066684_10802722All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia622Open in IMG/M
3300005367|Ga0070667_101232195Not Available700Open in IMG/M
3300005434|Ga0070709_11704743All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia514Open in IMG/M
3300005435|Ga0070714_101144720All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia759Open in IMG/M
3300005436|Ga0070713_100474776All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1177Open in IMG/M
3300005436|Ga0070713_102052097All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia554Open in IMG/M
3300005439|Ga0070711_101819197All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia534Open in IMG/M
3300005467|Ga0070706_100783877All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia883Open in IMG/M
3300005471|Ga0070698_100931253All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia815Open in IMG/M
3300005534|Ga0070735_10453454All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia766Open in IMG/M
3300005541|Ga0070733_10789014Not Available638Open in IMG/M
3300005545|Ga0070695_100164951All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp.1558Open in IMG/M
3300005548|Ga0070665_102480665All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia520Open in IMG/M
3300005560|Ga0066670_10444597All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia799Open in IMG/M
3300005614|Ga0068856_101570357All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia671Open in IMG/M
3300005614|Ga0068856_101719831Not Available639Open in IMG/M
3300005764|Ga0066903_105002845All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia703Open in IMG/M
3300005921|Ga0070766_10628063Not Available723Open in IMG/M
3300006028|Ga0070717_10212201All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1699Open in IMG/M
3300006028|Ga0070717_11492088All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia613Open in IMG/M
3300006028|Ga0070717_11747912All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia562Open in IMG/M
3300006052|Ga0075029_100415233All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales877Open in IMG/M
3300006175|Ga0070712_100548833All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia973Open in IMG/M
3300006175|Ga0070712_101300791All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia633Open in IMG/M
3300006606|Ga0074062_12964309All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1752Open in IMG/M
3300009148|Ga0105243_10473962All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp.1180Open in IMG/M
3300009520|Ga0116214_1109874Not Available1016Open in IMG/M
3300010152|Ga0126318_10614467Not Available706Open in IMG/M
3300010362|Ga0126377_13382667Not Available516Open in IMG/M
3300010366|Ga0126379_10327049Not Available1552Open in IMG/M
3300010375|Ga0105239_10499554All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1383Open in IMG/M
3300012198|Ga0137364_11127654Not Available590Open in IMG/M
3300012205|Ga0137362_11149364All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium659Open in IMG/M
3300012207|Ga0137381_10012399All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia6552Open in IMG/M
3300012208|Ga0137376_10491178All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1065Open in IMG/M
3300012478|Ga0157328_1002421All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria898Open in IMG/M
3300012492|Ga0157335_1040175Not Available525Open in IMG/M
3300012517|Ga0157354_1068724Not Available550Open in IMG/M
3300012924|Ga0137413_10476609All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia913Open in IMG/M
3300012925|Ga0137419_10783689All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia779Open in IMG/M
3300012987|Ga0164307_10248344All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp.1240Open in IMG/M
3300013297|Ga0157378_10175505All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp.2012Open in IMG/M
3300014968|Ga0157379_12340266Not Available532Open in IMG/M
3300015265|Ga0182005_1253584Not Available545Open in IMG/M
3300015373|Ga0132257_101102990All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. Iso8991002Open in IMG/M
3300015373|Ga0132257_104305552Not Available518Open in IMG/M
3300016422|Ga0182039_10765890All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia855Open in IMG/M
3300016422|Ga0182039_11148752Not Available700Open in IMG/M
3300017821|Ga0187812_1101310Not Available941Open in IMG/M
3300017924|Ga0187820_1074121All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii949Open in IMG/M
3300017926|Ga0187807_1016655All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2266Open in IMG/M
3300017942|Ga0187808_10613691Not Available505Open in IMG/M
3300017970|Ga0187783_10450014All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria935Open in IMG/M
3300017973|Ga0187780_11464181All Organisms → cellular organisms → Bacteria504Open in IMG/M
3300017995|Ga0187816_10067362All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1514Open in IMG/M
3300018482|Ga0066669_10865943All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia806Open in IMG/M
3300019877|Ga0193722_1026764All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. Iso8991491Open in IMG/M
3300020140|Ga0179590_1233281Not Available504Open in IMG/M
3300020150|Ga0187768_1018839All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1460Open in IMG/M
3300020583|Ga0210401_11477046Not Available537Open in IMG/M
3300021170|Ga0210400_10558528Not Available944Open in IMG/M
3300021180|Ga0210396_10732604All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria852Open in IMG/M
3300021362|Ga0213882_10266306Not Available712Open in IMG/M
3300021402|Ga0210385_10332443Not Available1131Open in IMG/M
3300021403|Ga0210397_10952022All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia665Open in IMG/M
3300021405|Ga0210387_10152194All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1980Open in IMG/M
3300021432|Ga0210384_10168673All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1967Open in IMG/M
3300021432|Ga0210384_11844994All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii510Open in IMG/M
3300021475|Ga0210392_10498073All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria897Open in IMG/M
3300021477|Ga0210398_11033061Not Available654Open in IMG/M
3300021559|Ga0210409_10169285All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. Iso8991998Open in IMG/M
3300022533|Ga0242662_10182697All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia652Open in IMG/M
3300022708|Ga0242670_1051733Not Available587Open in IMG/M
3300022717|Ga0242661_1010838All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1314Open in IMG/M
3300022720|Ga0242672_1130518Not Available523Open in IMG/M
3300024283|Ga0247670_1071317Not Available633Open in IMG/M
3300024325|Ga0247678_1046345Not Available699Open in IMG/M
3300025898|Ga0207692_10154871All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1315Open in IMG/M
3300025906|Ga0207699_11318397Not Available534Open in IMG/M
3300025912|Ga0207707_10668669Not Available874Open in IMG/M
3300025924|Ga0207694_10171403All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. Iso8991757Open in IMG/M
3300025929|Ga0207664_11352083Not Available632Open in IMG/M
3300026041|Ga0207639_11593619Not Available612Open in IMG/M
3300026121|Ga0207683_11127522Not Available727Open in IMG/M
3300026557|Ga0179587_10550459All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia758Open in IMG/M
3300027168|Ga0208239_1003583All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1250Open in IMG/M
3300027172|Ga0208098_1014783Not Available742Open in IMG/M
3300027829|Ga0209773_10146590All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia982Open in IMG/M
3300027855|Ga0209693_10094153All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1481Open in IMG/M
3300027884|Ga0209275_10121808All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1357Open in IMG/M
3300027894|Ga0209068_10363631Not Available821Open in IMG/M
3300028072|Ga0247675_1035863Not Available727Open in IMG/M
3300028715|Ga0307313_10028483All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. Iso8991564Open in IMG/M
3300028799|Ga0307284_10009229All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. Iso8992895Open in IMG/M
3300030007|Ga0311338_11132428All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium748Open in IMG/M
3300030629|Ga0210268_1204534Not Available633Open in IMG/M
3300031720|Ga0307469_12545685Not Available500Open in IMG/M
3300031723|Ga0318493_10194596All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1068Open in IMG/M
3300031768|Ga0318509_10362691All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia811Open in IMG/M
3300031821|Ga0318567_10258269All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria979Open in IMG/M
3300031821|Ga0318567_10657654Not Available595Open in IMG/M
3300031823|Ga0307478_10315171All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1283Open in IMG/M
3300031823|Ga0307478_11329264Not Available597Open in IMG/M
3300031845|Ga0318511_10155571All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1001Open in IMG/M
3300031896|Ga0318551_10507278All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia692Open in IMG/M
3300031896|Ga0318551_10933837Not Available507Open in IMG/M
3300031981|Ga0318531_10527408Not Available535Open in IMG/M
3300032054|Ga0318570_10269951All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia772Open in IMG/M
3300032065|Ga0318513_10488956Not Available602Open in IMG/M
3300032076|Ga0306924_12407911Not Available531Open in IMG/M
3300032805|Ga0335078_10734677All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas → Cellulomonas sp. URHD00241216Open in IMG/M
3300032895|Ga0335074_11080448All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia695Open in IMG/M
3300032896|Ga0335075_11050430All Organisms → cellular organisms → Bacteria724Open in IMG/M
3300032896|Ga0335075_11724274Not Available508Open in IMG/M
3300032898|Ga0335072_10786776All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia913Open in IMG/M
3300032954|Ga0335083_10889072All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia708Open in IMG/M
3300033158|Ga0335077_10920667Not Available879Open in IMG/M
3300034819|Ga0373958_0163884Not Available564Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil25.00%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere11.29%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil6.45%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil5.65%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment4.03%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.23%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.42%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.42%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.42%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil2.42%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere2.42%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.61%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.61%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.61%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.61%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil1.61%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.61%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.61%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil1.61%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.61%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere1.61%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.61%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.61%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.81%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil0.81%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil0.81%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.81%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.81%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.81%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa0.81%
Exposed RockEnvironmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock0.81%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.81%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.81%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.81%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.81%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.81%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.81%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2189573001Grass soil microbial communities from Rothamsted Park, UK - FD2 (NaCl 300g/L 5ml)EnvironmentalOpen in IMG/M
3300004635Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005534Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006606Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009520Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaGEnvironmentalOpen in IMG/M
3300009839Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaGEnvironmentalOpen in IMG/M
3300010152Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012478Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.9.old.080610Host-AssociatedOpen in IMG/M
3300012492Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.yng.030610Host-AssociatedOpen in IMG/M
3300012517Unplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610EnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012987Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015265Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaGHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300017821Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2EnvironmentalOpen in IMG/M
3300017924Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5EnvironmentalOpen in IMG/M
3300017926Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2EnvironmentalOpen in IMG/M
3300017942Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3EnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019877Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1EnvironmentalOpen in IMG/M
3300020140Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020150Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MGEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021362Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09EnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300022533Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022708Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022717Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022720Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300024283Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11EnvironmentalOpen in IMG/M
3300024325Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK19EnvironmentalOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025924Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026041Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026121Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027168Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF037 (SPAdes)EnvironmentalOpen in IMG/M
3300027172Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF038 (SPAdes)EnvironmentalOpen in IMG/M
3300027829Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300027894Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300028072Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK16EnvironmentalOpen in IMG/M
3300028715Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203EnvironmentalOpen in IMG/M
3300028799Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123EnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030629Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO153-ARE093SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031723Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031845Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031981Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25EnvironmentalOpen in IMG/M
3300032039Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21EnvironmentalOpen in IMG/M
3300032054Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23EnvironmentalOpen in IMG/M
3300032065Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032895Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3EnvironmentalOpen in IMG/M
3300032896Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4EnvironmentalOpen in IMG/M
3300032898Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1EnvironmentalOpen in IMG/M
3300032954Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M
3300034819Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1Host-AssociatedOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
FD2_072474002189573001Grass SoilMTGDGANQASTRGRRAAVPVGDPILTSKITPPDVPHWAVPRPRITKQIAEGSRWCPLTIVTGP
Ga0062388_10126067913300004635Bog Forest SoilMAAQVPSQASTRGRRSAVSGSDPILTSKITAPNVPDWAVPRQRITRLITEG
Ga0066677_1012903823300005171SoilMTVDGANQPSTRGRRPAMSVGDPILTSKITPPDVPHWAVPRPRITKLIAEGTRWCPLTIVTGPPGAGK
Ga0066684_1080272223300005179SoilMTVDGANQPSTRGRRPAMSVGDPILTSKITPPDVPHWAVPRPRITKLIAEGTRWCPLTIVTGPP
Ga0070667_10123219513300005367Switchgrass RhizosphereMTADGANQASTRGRRATVSSGDPILTSKITPPDVPHWAVPRARITKLIA
Ga0070709_1170474313300005434Corn, Switchgrass And Miscanthus RhizosphereMTAEGANQASTRGRRATVSSGDPILTSKITPPDVPHWAVPRARITKLIAEGTRWCPLTI
Ga0070714_10114472013300005435Agricultural SoilMAAHAANEASTRGRRAAVSGGDPILTSKITPPNVPDWAVPRPRITQQI
Ga0070713_10047477623300005436Corn, Switchgrass And Miscanthus RhizosphereMAVNVANRGPRRTGRSAGPAGDPILTSKITVPEVPEWAVLRPRITGLIAEGTRWCPLTVVTG
Ga0070713_10205209723300005436Corn, Switchgrass And Miscanthus RhizosphereMTGDGANQASIRGRRATVSSGDPILTSKITPPDVPHWAVPRARITKLIAEGTRWCPLTI
Ga0070711_10181919723300005439Corn, Switchgrass And Miscanthus RhizosphereMTAEGANQASTRGRRATVSSGDPILTSKITPPDVPHWAVPRARITKLIAEGTRWC
Ga0070706_10078387713300005467Corn, Switchgrass And Miscanthus RhizosphereMAVHAANHVSTRGRRSSTSVGDPILASKITVPSVPDWAVHRPRITTLIGQGTQCCPLTV
Ga0070698_10093125313300005471Corn, Switchgrass And Miscanthus RhizosphereMTADGANQASTRGRRATMSSGDPILTSKITPPDVPHWAVPRPRITKLIAEGARWCPLTIVTGPPGAGK
Ga0070735_1045345413300005534Surface SoilMAAYAANRAPMSTRRSTVPIGDPILTSKITAPDVPAWAVQRPRITGRIAEGTRWCPLTVVTG
Ga0070733_1078901413300005541Surface SoilMAAQAPTQASTRSRRPAVSASHPIPGSKITAPDVPDWAVPRPRITRLIAEGA
Ga0070695_10016495133300005545Corn, Switchgrass And Miscanthus RhizosphereMTADGANQASTRGRRTTVSSGDPILTSKITPPDVPHWAVPRARITKLIAEGT
Ga0070665_10248066523300005548Switchgrass RhizosphereMATHGAHQATTRPRRSAAPVGDPILTSKITPPPVPHWAVPRPRVIGLIADGTQACPLTVVTG
Ga0066670_1044459713300005560SoilMTADGANQVSTRGRRATVSSGDPILTSKITPPDVPHWAVPRPRITKLIAEGTRWCPLTIVTGPP
Ga0068856_10157035723300005614Corn RhizosphereMAAHAANEASTRGRRAAVSGGDPILTSKITPPNVPDWAVPRPRITQQIAEGTRW
Ga0068856_10171983113300005614Corn RhizosphereMTADGANQASTRGRRATVSSGDPILTSKITPPDVPH
Ga0066903_10500284523300005764Tropical Forest SoilMAAHVANRAQARARRPGANAGDPILASKITAPDVPAWAVQRQRITDLIAEGTRWCP
Ga0070766_1062806313300005921SoilMSAHAPTYGRRSVVSASDPILTSKITAPNVPDWAVPRPRIT
Ga0070717_1021220113300006028Corn, Switchgrass And Miscanthus RhizosphereMAAYAANRVPTSTRRSTVPIGDPILTSKITAPDVPAWAVQRPRITGRIAEGTRWCPLTV
Ga0070717_1149208823300006028Corn, Switchgrass And Miscanthus RhizosphereMTAEGANQASTRGRRATVSSGDPILTSKITPPDVPHWAVPRARITKLIAEGTRWCPLTIVTGP
Ga0070717_1174791223300006028Corn, Switchgrass And Miscanthus RhizosphereMTADGANQASTRGRRATVSSGDPILTSKITPPDVPHWAVPRARITKLIAEGTRWCPLTIVTGP
Ga0075029_10041523313300006052WatershedsMAAHAGNRGPTRTRRAAVLVDDPILTSKITAPDIPAWAVQRPRITALIAEGARWCPLTVVTGP
Ga0070712_10054883323300006175Corn, Switchgrass And Miscanthus RhizosphereMAVNVANRGPRRTGRSAGSAGDPILTSKITVPEVPEWAVLRPRITGLIAEGTRWCPLTVVTG
Ga0070712_10130079113300006175Corn, Switchgrass And Miscanthus RhizosphereMAVNVANHGPCRTRRSAGPAGDPILTSKITVPEVPEWAVLRPRITGLIAEGTRWCPLTVV
Ga0074062_1296430933300006606SoilMTADGANQASTRVRRATVSAGDPILTSKITPPDVPHWAVPRARITKLIAEGTRW
Ga0105243_1047396213300009148Miscanthus RhizosphereMTADGANQASTRGRRTTVSSGDPILTSKITPPDVPHWAVPRARITKLIA
Ga0116214_110987413300009520Peatlands SoilMAAHAANRAPARTKRSPALVGDPILTSKITAPDVPAWAVQRPRITGLIAEGARWCQL
Ga0116223_1060115823300009839Peatlands SoilMAAHAANRAPARTKRSPALVGDPILTSKITAPDVPAWAVQRPRITELIAEG
Ga0126318_1061446723300010152SoilMTAEGANQASTRGRRATVFSGDPILTSKITPPDVPHWAVPRARITKLIAEGTRWCPLTIVTGPPGAGK
Ga0126377_1338266723300010362Tropical Forest SoilMATHVARRATRARRPAVTAGDPVLPSNITAPGAPEWAVRRPRITKLIAEGTRWCPLTVVTGP
Ga0126379_1032704913300010366Tropical Forest SoilMAAHVGNRVSARTKRPGSLVGDPILTSKITAPEVPGWAVQRQRITDLIAEGTRWCPLTV
Ga0105239_1049955423300010375Corn RhizosphereMMAVNVANHGPCRTRRSAGPAGDPILTSKITVPEVPEWAVLRPRITGLIAEGTRWCPLTVVTGPPGA
Ga0137364_1112765423300012198Vadose Zone SoilMAAHAANEASTRGRRAAVSGGDPILTSKITPPNVPDWAVPRPRITQQIAEGT
Ga0137362_1114936423300012205Vadose Zone SoilMAAHAANQASTRGRRAVVSVGDPILTSKITPPDVPDWAVPRPRITKLIAEGPGGAR*
Ga0137381_1001239913300012207Vadose Zone SoilMAAHAANEASIRGRRAAVSGGDPILTSKITPPNVPDWA
Ga0137376_1049117813300012208Vadose Zone SoilMTADGANQASTRGRRPAMSVGDPILTSKITPPDVPHWAVP
Ga0157328_100242133300012478Arabidopsis RhizosphereMTADGANQASTRGRRATVSSGDPILTSKITPPDVPHWAV
Ga0157335_104017523300012492Arabidopsis RhizosphereMTADGANQASTRGRRATVSSGDPILTSKITPPDVPHWAVPRARIT
Ga0157354_106872423300012517Unplanted SoilMTADGANQASTRGRRATVSSGDPILTSKITPPDVPHWAVPRARITK
Ga0137413_1047660923300012924Vadose Zone SoilMAAHAANEASIRARRAAVSGGDPILTSKITPPNVPDWAVPRPRITQQ
Ga0137419_1078368923300012925Vadose Zone SoilMAAHAANEASIRGRRAAVSGGDPILTSKITPPNVP
Ga0164307_1024834433300012987SoilMTADGANQASTRGRRTTVSSGDPILTSKITPPDVPHWAVPRARITKLIAEGTRWCPLTIVTGPPGAG
Ga0157378_1017550533300013297Miscanthus RhizosphereMTADGANQASTRGRRATVSSGDPILTSKITPPDVPHWAVPRPRITKLIAEGTRWCPLTIVTGPPGAGK
Ga0157379_1234026623300014968Switchgrass RhizosphereMTAEGANQASTRGRRATVSSGDPILTSKITPPDVPHWAVPRARITKLIA
Ga0182005_125358413300015265RhizosphereMTADGANQASTRGRRATVSSGDPILTSKITPPDVPHWAVPRPRITKLIAEGTRWCPLTIV
Ga0132257_10110299033300015373Arabidopsis RhizosphereMTADGANQASIRGRRATVSSGDPILTSKITPPDVPHWAVPRARITKLIAEGTRWCPLTIVTGPP
Ga0132257_10430555223300015373Arabidopsis RhizosphereMTADGANQASTRGRRATVSSGDPILTSKITPPDVPHWAVPRARITKLIAEGTRWCPLTIVTGPPGAG
Ga0182039_1076589013300016422SoilMAAHVANRVSARTRRPAALAGDPILTSKITAPDVPTWAVQRPRITDLIAEGTRWCPLT
Ga0182039_1114875213300016422SoilMAAHAANRASARTKRPASLVGDPILTSKITAPDVPSWAVQRQRITDLIAEGTRWCPLTVVTG
Ga0187812_110131013300017821Freshwater SedimentMAAHVANRAPTRTRRPAAPAGDPILTSKITAPDIPAWGVQRQRITDLIAEGTRWCPLTVVTGPPG
Ga0187820_107412123300017924Freshwater SedimentMAANVASRVPARTRRSAALVEDPILTSKITAPDVPAWAVQRPRITELIAEGARWCQLTVV
Ga0187807_101665543300017926Freshwater SedimentMAAHVANRAPTRTRRPAAPAGDPILTSKITAPDIPAWGVQRQRITDLIAEGTRWCPL
Ga0187808_1061369113300017942Freshwater SedimentMVAHVADQAATSPRRPTVSSGDPILEAKITAPSVPEWAVQRPRITKMITQSTRWCPLTVVTGPPGAGK
Ga0187783_1045001423300017970Tropical PeatlandMAAHVANRAPGRARRPAALADGPILSSKITSPDVPKWAVQRPRITELITEGTRWC
Ga0187780_1146418113300017973Tropical PeatlandMATHVAEQAASTRPRRPASSSGDPILEAKITAPNVPEWAVQRPRITKMIAQSTRWCPLTVVTGPPGAG
Ga0187816_1006736213300017995Freshwater SedimentMAANVASRVPARTRRSAALVEDPILTSKITAPDVPTWAVQRPRITALIAEGT
Ga0066669_1086594323300018482Grasslands SoilMAVNVANRGPRRTRRSAGPAGDPILTSKITVPEVPEWAVLRPRITGLIAEGTRWCPLTVVTGPP
Ga0193722_102676413300019877SoilMTAEGANQASTRGRRATVSLVDPILTSKITPPDAPHWAVPRPRITKLIAEGTRWCPLTIVTGPPGA
Ga0179590_123328113300020140Vadose Zone SoilMAVHVPNHVPTRGRRSSVPAGDPILASKITVPNVPDWAVHRPRITTLIGQGTQCCPLTVITGPPGAG
Ga0187768_101883933300020150Tropical PeatlandMATHVAEQAASTRPRRPASSSGDPILEAKITAPNVPEWAVQRPRITKMIAQSTRWCPLTVVTGPPGA
Ga0210401_1147704613300020583SoilMAAHAVNEASTRGRRAAVPGGDPILTSKITPPNVPDWAVPRPRITRQIAEGTRWCPLT
Ga0210400_1055852813300021170SoilMAAQVPSQALTRGRRSTVSAGDPILTSKITAPNVPDWAVPRPRITRLIAEGTRWCPLTVVTGP
Ga0210396_1073260413300021180SoilMAAPVTNPPSTRGRRSAGDPILAAKITVPNVPDWAVQRPRITKLIVQGTRWCPLTVVTGPPG
Ga0213882_1026630623300021362Exposed RockMAAHASAHASNQASNGSRRVAVSVGDPILTSKITAPNVPDWAVPRPRITRLIAE
Ga0210385_1033244313300021402SoilMAAQVPSQALTRGRRSTVSAGDPILTSKITAPNVPDWAVPRPRITRLIAEGTRWCPLTVVTGAPGAGK
Ga0210397_1095202223300021403SoilMAAYAANRAPTSTRRSTVLMGDPILTSKITAPDVPAWAVQRPRITGRIAEGTRWCPLTVVTGPAGAGK
Ga0210387_1015219413300021405SoilMAVNAANRRPYRTRRPAGPAGDPILTSKITVPEVPEWAVLRPRITGLIAEGTRWCPLTVV
Ga0210384_1016867313300021432SoilMAAHAANEASTRGRRAAVPGGDPILTSKITPPNVPDWAVPRPRITRQ
Ga0210384_1184499413300021432SoilMAAQVPSQASIRGRRSAVSASDPILTSKITAPNVPDWAVHRPRITRLIAEGTRWCP
Ga0210392_1049807313300021475SoilMTAEGANQASTRGRRATVSSGDPILTSKITPPDVPHWAVPRARITKLIAEGTRWCPLTIVTGPPG
Ga0210398_1103306113300021477SoilMAAQVPSQALTRGRRSTVSAGDPILTSKITAPNVPDWAVPRPRITRLI
Ga0210409_1016928533300021559SoilLMAAHAVNEASTRGRRAAVPGGDPILTSKITPPNVPDWAVPRPRITRQIAEGTRWCPL
Ga0242662_1018269713300022533SoilMAAYAANRAPTSTRRSTVPIGDPILTSKITAPDVPAWAVQRPRITGRIAEGTRWCPLTVVTGP
Ga0242670_105173323300022708SoilMAARVGNQAATRARRPAMSVGDPILASKVTAPSVPAWAVPRPRITKLIAEGTRWCPLTLVTGPPG
Ga0242661_101083823300022717SoilMAAQVPGQASTRGRWSAVSGSDPILTSKITAPHVPDWAVPRQRITRLIAEGTRWCPLTVVTGPPGAG
Ga0242672_113051813300022720SoilMAARVGNQAAIRARRPATSVGDPILASKITAPSVPDWAVPRPRITKLIAQGTRWCPLTLVTGPPGARK
Ga0247670_107131723300024283SoilMTADGANQASTRGRRATVSSGDPILTSKITPPDVPHWAVPRARITKLIAEGTR
Ga0247678_104634523300024325SoilMTADGANQASTRGRRATVSSGDPILTSKITPPDVPHWAVPRA
Ga0207692_1015487123300025898Corn, Switchgrass And Miscanthus RhizosphereMAADVAGQESVRSRRPAPSGAVPILASKITVPRVPDWAVPRSRITRLVAEGTRWCPLTVVTGP
Ga0207699_1131839723300025906Corn, Switchgrass And Miscanthus RhizosphereMTAEGANQASTRGRRATVSSGDPILTSKITPPDVPHWAVPRARITKLIAEGTRWCPLTIVTGPP
Ga0207707_1066866913300025912Corn RhizosphereMTADGANQASTRGRRATVSSGDPILTSKITPPDVPHWAVPRARITKLIAEGTRWCPLTIVTGPPG
Ga0207694_1017140333300025924Corn RhizosphereMTADGANQASTRGRRATVSSGDPILTSKITPPDVPHWAVPRARITKLIAEGTRWCPLTIV
Ga0207664_1135208313300025929Agricultural SoilMAVNAANRRPYRTRRPAGPAGDPILTSKITVPEVPEWAVLRPRITGLIAEGTRWCPLTVVTGPP
Ga0207639_1159361913300026041Corn RhizosphereMTADGANQASTRGRRTTVSSGDPILTSKITPPDVPHWAVPRARITKLIAEGTRWCPLTIVTGPP
Ga0207683_1112752223300026121Miscanthus RhizosphereMTAEGANQASTRGRRATVSSGDPILTSKITPPDVPHWAVPRARITKLIAEGTRWCPLTIVTGPPGAG
Ga0179587_1055045923300026557Vadose Zone SoilMAAHAANEASIRGRRAAVSGGDPILTSKITPPNVPDWAVPRLRITQQIAEGTRWCPLT
Ga0208239_100358323300027168Forest SoilMAAQVPSQASTRGRRSAVSPSDPILTSKITAPNVPDWAVHRPRITRLIAEGARWCPLTVVTG
Ga0208098_101478313300027172Forest SoilMAAQVPSQASTRGRRSAVSPSDPILTSKITAPNVPDWAVHRPRITRLIAEGAR
Ga0209773_1014659023300027829Bog Forest SoilMAAQVPSQASTRGRRSAVSGSDPILTSKITAPNVPDWAVPRQRITRLITEGTRWCP
Ga0209693_1009415333300027855SoilMSAHVPHQASTRGRRSGVSGSDPILTSKITAPNVPDWAVP
Ga0209275_1012180823300027884SoilMAAQVPSQALTRGRRSTVSAGDPILTSKITAPNVPDWAVPRPRITRLIAEGARWCPLTIVTGPP
Ga0209068_1036363123300027894WatershedsMAAHAVNEASTRGRRTVVSGDDPILTSKITPPNVPDWAVPRPR
Ga0247675_103586323300028072SoilMTADGANQASTRGRRATVSSGDPILTSKITPPDVPHWAVPRARITKLIAEGTRWCP
Ga0307313_1002848333300028715SoilMTADGANQASTRGRRATVSSVDPILTSKITPPDAPHWAVPR
Ga0307284_1000922913300028799SoilMTVDGANQASTRGRRATVSSGDPILTSKITPPDAPHWAVPRPRITKLIAEGTRWCPLTIVTGPPGA
Ga0311338_1113242813300030007PalsaMTELAQVRPGGGLPPTRTRRSAGAIGDLILTSKITAPGVPDWAVQRPRITELIAQGTRWCPLTVLTSPAGAG
Ga0210268_120453423300030629SoilMAAHAANQVETRGRRSAVSSGHPILASKITAPTLPDWAVERTRITKLVAEGTRCCPLTVVTGPPGA
Ga0307469_1254568523300031720Hardwood Forest SoilMTGDGANQASIRGRRATVSSGDPILTSKITPPDVPHWAVPRARITKLIAEGTRWCPLTIVTGPPG
Ga0318493_1019459643300031723SoilMTAHVANRASARTRRPVALVGDPILTSKITPPDVPAWAVQRQRITDLIAEGARW
Ga0318509_1036269123300031768SoilMAAHVANRAPARTRRPPASAGDPILTSKITAPGIPAWGVQRQRITDLIAEDTRW
Ga0318567_1025826933300031821SoilMAAHVANRAPARTRRSAASGGDPILTSKITAPDIPAWAVQRPRITELIAEGARWCPLT
Ga0318567_1065765413300031821SoilMAAHVANRAPARTRRSPAPGGDPILTSKITAPDIPAWAVERPRITELIAEGARWCPLTVVTGPP
Ga0307478_1031517113300031823Hardwood Forest SoilMAAQVPSQALTRGRRSTVSAGDPILTSKITAPNVPDWAVPRPRITRLIAEGTRW
Ga0307478_1132926413300031823Hardwood Forest SoilMSVYAANRAPTSAKRPAAVVGDPILTSKITAPDVPAWAVQRPRITKLIAEGTQWCPLTVVSGPAGAGK
Ga0318511_1015557113300031845SoilMAAHAASQTSTRGGRSAVSASDPILASKITAPNVPDWAVQRPRITKLIAEGTRWCPLTVVTG
Ga0318551_1050727813300031896SoilMAAYAANRALTSTRRSTVPIGDPILTSKITAPDVPAWAVQRPRITGRIAEGTRWCPLTVV
Ga0318551_1093383713300031896SoilMTAHVANRASARTKRPASLVGDPILTSKITAPDVPSWAVQRQRVTDLIAEGTRWCPLTVVTGPPGAGK
Ga0310909_1156682813300031947SoilMAAHVGNRASARTKRPGSLAGDPILTSKITAPDVPGWAVQRQRITDLIAEGTR
Ga0318531_1052740813300031981SoilMTAHVANRASARTRRPMALVGDPILTSKITAPDVPAWAVQRQRITDLIAEGTR
Ga0318559_1058790723300032039SoilMTAHVANRASARTKRPASLVGDPILTSKITAPDVPSWAVQRQRVTDLIAEGTR
Ga0318570_1026995123300032054SoilMAAHVANRVSARTRRPAALAGDPILTSKITAPDVPTWAVQRPRITDLIAEGTRWC
Ga0318513_1048895613300032065SoilMAAHVANRAPARTRRPPASAGDPILTSKITAPGIPAWGVQRQRITDLIAEDTRWCPLTVVTGPPGAGK
Ga0306924_1240791123300032076SoilMAAYAANRALTSTRRSTVPIGDPILTSKITAPDVPAWAVQRPRITGRIAEGTRWCPLTVVTGPAGA
Ga0335078_1073467713300032805SoilMAVNHARGGRSVPSADNPILASKITVPSVPDWAVPRPRITRLIAEGARWCPLTVVTGP
Ga0335074_1108044823300032895SoilMAAYAANRVSTSTRRSTVPIGDPILTSKITAPDVPPWAVQRPRITGRIAEGTRWCPLTV
Ga0335075_1105043023300032896SoilMAGEVSVSAHASTHDRRPAVSAGDPILTSKITSPPVPDWAVPRPRITRLIAEGARWCPLT
Ga0335075_1172427413300032896SoilMTGDGANLASTRGRRAIVSSGDPILTSKITPPDVPHWAVPRARITKLIAEGTRWCPLTIVTGPPGAG
Ga0335072_1078677623300032898SoilMAVNVANRASTSPRRPATSVGDPILTSKITAPDVPAWAVRRPRITELIAEGTRWCPLTVV
Ga0335083_1088907223300032954SoilMAAYAANRVPTSTRRSTVPIGDPILTSKITAPDVPPWAVQRPRITGRIAEGTRWCPLTVVTGPA
Ga0335077_1092066713300033158SoilMASHAANQASTRGRRAIVSAGDPILISKITPPAVPDWA
Ga0373958_0163884_2_1423300034819Rhizosphere SoilMTADGANQASTRGRRTTVSSGDPILTSKITPPDVPHWAVPRARITKL


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.