Metagenome / Metatranscriptome Family F069100

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069100
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	42 residues
Representative Sequence	TQMRLSSTGNAFLLQGSLRAFEGANEVCRRDWDRSIPRDFS
Number of Associated Samples	111
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	4.03 %
% of genes near scaffold ends (potentially truncated)	96.77 %
% of genes from short scaffolds (< 2000 bps)	91.13 %
Associated GOLD sequencing projects	110
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (95.161 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.806 % of family members)
Environment Ontology (ENVO)	Unclassified (31.452 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.839 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56. 1AF_2010_repII_A001DRAFT_100448871 2JGIcombinedJ26739_1016094301 3JGIcombinedJ26739_1016323971 4Ga0066677_108488362 5Ga0066388_1033719092 6Ga0066388_1088006042 7Ga0070688_1009571632 8Ga0070698_1016100532 9Ga0070761_110921781 10Ga0070763_108375541 11Ga0066905_1013175622 12Ga0066905_1014644351 13Ga0068858_1019753361 14Ga0068860_1017944781 15Ga0070717_116147242 16Ga0075017_1004223531 17Ga0075019_103719223 18Ga0070765_1002421531 19Ga0070765_1019382762 20Ga0070765_1020404592 21Ga0075427_100749331 22Ga0066653_102604641 23Ga0081244_11945771 24Ga0116214_13719101 25Ga0116225_13389422 26Ga0116135_11854501 27Ga0123355_112004611 28Ga0126384_110909921 29Ga0126373_114247101 30Ga0126377_121407451 31Ga0126377_134214651 32Ga0134122_115561862 33Ga0126359_11452802 34Ga0137362_105809753 35Ga0137381_104049783 36Ga0137358_106710621 37Ga0137359_103465551 38Ga0181524_103316001 39Ga0181518_105377802 40Ga0163163_116574002 41Ga0182015_105403902 42Ga0157377_111631211 43Ga0157376_123582632 44Ga0137403_113304111 45Ga0182033_105264751 46Ga0182032_103173112 47Ga0182034_107664281 48Ga0182040_100451222 49Ga0182040_107379911 50Ga0182037_100234323 51Ga0187807_12269022 52Ga0187778_101620491 53Ga0187783_102234075 54Ga0187782_106363371 55Ga0187766_107577632 56Ga0187784_108865071 57Ga0187769_103176552 58Ga0193735_11507401 59Ga0193753_101722632 60Ga0210403_112350591 61Ga0210399_106886231 62Ga0210380_104995012 63Ga0210406_104366463 64Ga0210405_101103031 65Ga0210385_112158051 66Ga0210397_110445091 67Ga0210389_106021723 68Ga0210386_102479795 69Ga0210383_108546732 70Ga0210391_100917635 71Ga0210391_103961241 72Ga0210391_115219171 73Ga0210398_115655771 74Ga0210402_106830153 75Ga0210410_104508221 76Ga0212123_104207931 77Ga0207671_100403426 78Ga0207700_100376341 79Ga0257165_10580022 80Ga0208730_10047851 81Ga0209734_10461251 82Ga0209115_10481312 83Ga0209330_10064501 84Ga0209117_10639021 85Ga0207826_10651361 86Ga0209626_10756691 87Ga0209773_101871451 88Ga0209167_105033041 89Ga0209006_105590141 90Ga0209526_103405841 91Ga0268266_121648232 92Ga0302219_100136791 93Ga0265338_109706331 94Ga0307286_101160041 95Ga0311372_124575991 96Ga0265763_10007591 97Ga0318515_100407514 98Ga0310686_1077126571 99Ga0307476_106350791 100Ga0310813_103616112 101Ga0307468_1003164931 102Ga0306918_111721321 103Ga0318492_100467743 104Ga0318535_104396431 105Ga0318546_108621842 106Ga0318546_109503811 107Ga0318529_101007363 108Ga0318548_100780542 109Ga0318550_105100961 110Ga0302315_102919213 111Ga0318511_104589682 112Ga0306921_111920771 113Ga0307479_112348551 114Ga0318531_102598001 115Ga0318531_103414013 116Ga0318559_106178831 117Ga0318506_105716792 118Ga0318540_103938861 119Ga0307472_1020938901 120Ga0335078_106543031 121Ga0335078_127480301 122Ga0335073_107684193 123Ga0310914_103555483 124Ga0310914_113983481
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56. 1AF_2010_repII_A001DRAFT_100448871 2JGIcombinedJ26739_1016094301 3JGIcombinedJ26739_1016323971 4Ga0066677_108488362 5Ga0066388_1033719092 6Ga0066388_1088006042 7Ga0070688_1009571632 8Ga0066905_1013175622 9Ga0068858_1019753361 10Ga0068860_1017944781 11Ga0075017_1004223531 12Ga0070765_1020404592 13Ga0081244_11945771 14Ga0116214_13719101 15Ga0116225_13389422 16Ga0126377_121407451 17Ga0126377_134214651 18Ga0126359_11452802 19Ga0137362_105809753 20Ga0182015_105403902 21Ga0182033_105264751 22Ga0182040_100451222 23Ga0182040_107379911 24Ga0187807_12269022 25Ga0187783_102234075 26Ga0187766_107577632 27Ga0187769_103176552 28Ga0212123_104207931 29Ga0268266_121648232 30Ga0265338_109706331 31Ga0318515_100407514 32Ga0310813_103616112 33Ga0318548_100780542 34Ga0335073_107684193
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40. 1Ga0210398_115655771 2AF_2010_repII_A001DRAFT_100448871 3JGIcombinedJ26739_1016094301 4JGIcombinedJ26739_1016323971 5Ga0066677_108488362 6Ga0066388_1033719092 7Ga0066388_1088006042 8Ga0070688_1009571632 9Ga0066905_1013175622 10Ga0068860_1017944781 11Ga0075017_1004223531 12Ga0070765_1019382762 13Ga0070765_1020404592 14Ga0075427_100749331 15Ga0066653_102604641 16Ga0081244_11945771 17Ga0116214_13719101 18Ga0116135_11854501 19Ga0123355_112004611 20Ga0126373_114247101 21Ga0126377_121407451 22Ga0126377_134214651 23Ga0134122_115561862 24Ga0126359_11452802 25Ga0137362_105809753 26Ga0181518_105377802 27Ga0163163_116574002 28Ga0182015_105403902 29Ga0157377_111631211 30Ga0157376_123582632 31Ga0182033_105264751 32Ga0182032_103173112 33Ga0182040_100451222 34Ga0187783_102234075 35Ga0187782_106363371 36Ga0187766_107577632 37Ga0187769_103176552 38Ga0193735_11507401 39Ga0193753_101722632 40Ga0210399_106886231 41Ga0210406_104366463 42Ga0210397_110445091 43Ga0210386_102479795 44Ga0210391_103961241 45Ga0210391_115219171 46Ga0210410_104508221 47Ga0212123_104207931 48Ga0207671_100403426 49Ga0207700_100376341 50Ga0209117_10639021 51Ga0207826_10651361 52Ga0209773_101871451 53Ga0209167_105033041 54Ga0209526_103405841 55Ga0268266_121648232 56Ga0302219_100136791 57Ga0265338_109706331 58Ga0311372_124575991 59Ga0318515_100407514 60Ga0310686_1077126571 61Ga0310813_103616112 62Ga0306918_111721321 63Ga0318492_100467743 64Ga0318548_100780542 65Ga0307479_112348551 66Ga0318531_102598001 67Ga0318531_103414013 68Ga0335078_106543031 69Ga0335078_127480301 70Ga0310914_113983481
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 44.93% Coil/Unstructured: 55.07%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF07681	DoxX	27.42
PF00903	Glyoxalase	6.45
PF00753	Lactamase_B	3.23
PF01862	PvlArgDC	2.42
PF14224	DUF4331	2.42
PF03475	3-alpha	1.61
PF00561	Abhydrolase_1	1.61
PF00027	cNMP_binding	1.61
PF07992	Pyr_redox_2	1.61
PF02077	SURF4	1.61

Showing 1 to 10 of 26 entries

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COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	29.03
COG4270	Uncharacterized membrane protein	Function unknown [S]	27.42
COG1945	Pyruvoyl-dependent arginine decarboxylase	Amino acid transport and metabolism [E]	2.42
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	1.61
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	1.61
COG2258	N-hydroxylaminopurine reductase YiiM, contains MOSC domain	Defense mechanisms [V]	1.61
COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	Replication, recombination and repair [L]	0.81
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.81
COG1402	Creatinine amidohydrolase/Fe(II)-dependent FAPy formamide hydrolase (riboflavin and F420 biosynthesis)	Coenzyme transport and metabolism [H]	0.81
COG1760	L-serine deaminase	Amino acid transport and metabolism [E]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.16 %
Unclassified	root	N/A	4.84 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.16 %
Unclassified	root	N/A	4.84 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.16 %
Unclassified	root	N/A	4.84 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	2.42 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	79.03 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.61 %
Unclassified	root	N/A	4.84 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.61 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	45.16 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2.42 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %
Unclassified	root	N/A	4.84 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.61 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2.42 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.90 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4.03 %
Unclassified	root	N/A	4.84 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	12.90 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.81 %

Name	Rank	Taxonomy	Distribution
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.81 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.90 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	10.48 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.81 %
Unclassified	root	N/A	4.84 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	2.42 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	2.42 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	0.81 %

Name	Rank	Taxonomy	Distribution
Acidisoma	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisoma	0.81 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	1.61 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.42 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.42 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.81 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	2.42 %
Unclassified	root	N/A	4.84 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Afipia broomeae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia broomeae	1.61 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.42 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.42 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.81 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	2.42 %
Unclassified	root	N/A	4.84 %
unclassified Acidisoma	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisoma → unclassified Acidisoma	0.81 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.81 %

Name	Rank	Taxonomy	Distribution
Acidisoma sp. L85	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisoma → unclassified Acidisoma → Acidisoma sp. L85	0.81 %
Afipia broomeae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia broomeae	1.61 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.90 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.42 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.42 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.81 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	2.42 %
Unclassified	root	N/A	4.84 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.81 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000793\|AF_2010_repII_A001DRAFT_10044887	All Organisms → cellular organisms → Bacteria	1000	Open in IMG/M
3300002245\|JGIcombinedJ26739_101609430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	547	Open in IMG/M
3300002245\|JGIcombinedJ26739_101632397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	542	Open in IMG/M
3300005171\|Ga0066677_10848836	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M
3300005332\|Ga0066388_103371909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	816	Open in IMG/M
3300005332\|Ga0066388_108800604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	501	Open in IMG/M
3300005365\|Ga0070688_100957163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	678	Open in IMG/M
3300005471\|Ga0070698_101610053	All Organisms → cellular organisms → Bacteria → Proteobacteria	601	Open in IMG/M
3300005591\|Ga0070761_11092178	All Organisms → cellular organisms → Bacteria → Proteobacteria	508	Open in IMG/M
3300005610\|Ga0070763_10837554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545	Open in IMG/M

Showing 1 to 10 of 124 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.94%
Host-Associated	Host-Associated	8.06%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	7.26%
Arthropoda	Host-Associated → Arthropoda	0.81%
Plants	Host-Associated → Plants	7.26%
Terrestrial	Environmental → Terrestrial	84.68%

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Arthropoda → Digestive System	0.81%
Freshwater	Environmental → Aquatic → Freshwater	4.84%
Peat	Environmental → Terrestrial → Peat	2.42%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.84%
Roots	Host-Associated → Plants → Roots	0.81%
Sediment	Environmental → Aquatic → Sediment	1.61%
Soil	Environmental → Terrestrial → Soil	82.26%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.81%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.61%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.81%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.81%
Loam	Environmental → Terrestrial → Soil → Loam	20.16%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.81%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.61%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.23%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.61%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.06%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.03%

Habitat	Taxonomy	Distribution
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.23%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.42%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	36.29%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.13%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.81%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.81%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.81%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.81%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.81%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.13%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.23%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.61%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.81%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.61%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.81%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.06%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.81%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.81%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.23%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.61%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.42%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.81%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.81%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.61%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.84%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.03%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.81%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.61%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.81%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.03%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.23%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.84%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.03%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.61%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M

Showing 1 to 10 of 111 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A001DRAFT_100448871	3300000793	Forest Soil	TQLRLSCNRDVFRLQGSLRAWEGANEVCRRDWDRSIARDFL*
JGIcombinedJ26739_1016094301	3300002245	Forest Soil	VRVETRLRLSSTGSAFLLQGSLRAWEGANELCHREWDRTIARDFL*
JGIcombinedJ26739_1016323971	3300002245	Forest Soil	IRVETQLRLSATGNTFLLQGSMRAFEGANEMCRRDWDRSIPRDFL*
Ga0066677_108488362	3300005171	Soil	QVRIETQMRLSCTREVFLLQASLRAWEGADEVCRRDWDRAIARDFL*
Ga0066388_1033719092	3300005332	Tropical Forest Soil	RIETQMRLTSTRDAFLLRASLRAFEGATEVCHREWDRAIPRDFM*
Ga0066388_1088006042	3300005332	Tropical Forest Soil	QIRIETQMRLASTRNAFLLQASLIATENANEVCRRDWDRTIPRDFV*
Ga0070688_1009571632	3300005365	Switchgrass Rhizosphere	AWQIRVETQMRLSSTADVFLLQGGLRAWEGGKEVYHRTCDRSISRDFM*
Ga0070698_1016100532	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	QMRLSCTREVFLLQASLRAWEGADEVCRRDWDRAIARDFL*
Ga0070761_110921781	3300005591	Soil	RLRLSSTGSAFLLQGSLRAWEGANEVCHREWDRAIPRDFL*
Ga0070763_108375541	3300005610	Soil	NEWQVRVETRLRLSSTGSAFLLQGSLRAWEGANELCHREWDRTIARDFL*
Ga0066905_1013175622	3300005713	Tropical Forest Soil	KIGIETQMRLSCTRNAFVLWGSLRAWEGANEVCQREWSRSIARDFL*
Ga0066905_1014644351	3300005713	Tropical Forest Soil	KIGIETQMRLSCTRNAFVLWGSLRAWEGANEVCQREWSRSVARDFL*
Ga0068858_1019753361	3300005842	Switchgrass Rhizosphere	QLRMSSTSNAFLLKVSLCAFDGDNEVCRRNWDRSIPRDFL*
Ga0068860_1017944781	3300005843	Switchgrass Rhizosphere	QIRIETEMRLSSTRDSFRLQGRLRAAEGETEVCRRDWDRSIPRDCL*
Ga0070717_116147242	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	TQMRLSCTREVFLLQASLRAWEGANEVCRRDWDRAIARDFL*
Ga0075017_1004223531	3300006059	Watersheds	TQLRLSSTGGAFLLQGSLRAFEGTNEVHRREWDRSIPRDSS*
Ga0075019_103719223	3300006086	Watersheds	RMSSTGNAFLLQGRLRAFEGDNEVCRRDWDRSIPRDFL*
Ga0070765_1002421531	3300006176	Soil	RLSATANAFLLQGSMRAFEGANEVCRRDWDRSIPRDFL*
Ga0070765_1019382762	3300006176	Soil	ETQLRMSSTANAFLLQGSMRAFEGANEVCRRDWDRTITRDFS*
Ga0070765_1020404592	3300006176	Soil	NEWQIRIDTQLRLSATSNAFVLQASLRAWEGTNEICHREWDRAIPRDFL*
Ga0075427_100749331	3300006194	Populus Rhizosphere	TQMRLSCTRDVFLLQASLRAWEGPNEVCHRDWDRSIPRDFL*
Ga0066653_102604641	3300006791	Soil	IETQMRLSCTRTAFLLQGSLRAWEGAIEVCHRDWDRTIPRDFL*
Ga0081244_11945771	3300006939	Tropical Rainforest Soil	ATANDFLLQGGLRAWEGTKEVCRREWYRPIPRDFL*
Ga0116214_13719101	3300009520	Peatlands Soil	MRLSSTRDTFLLQGSLRAFEGANEVCRRDCDCSIPRDFL
Ga0116225_13389422	3300009524	Peatlands Soil	SSTGNAFLLQGSMRAFEGANEVCRRDWDRSIPRDFS*
Ga0116135_11854501	3300009665	Peatland	ETQLRMSSTADAFLLQGSLRAFEGANEVCHRDWDRSVPRDFS*
Ga0123355_112004611	3300009826	Termite Gut	RLSSTRDTLLLQGSLRAFEGATEVCRRDWDRSVPRDLL*
Ga0126384_110909921	3300010046	Tropical Forest Soil	MRLSCTRNAFVLWGSLRAWEGANEVCQREWSRSIARDFL*
Ga0126373_114247101	3300010048	Tropical Forest Soil	LSCTRDVFLLQASLRAWEGANEVCRRDWDRSIACDFL*
Ga0126377_121407451	3300010362	Tropical Forest Soil	RDAWHVRVETEMRLSSTRDSFQLQGHLRAAEGAMEVCRRDWDLLIPRDCL*
Ga0126377_134214651	3300010362	Tropical Forest Soil	TQMRLSCNRDAFLLHGRLRASEGTNEVCHREWDRSIPRDFM*
Ga0134122_115561862	3300010400	Terrestrial Soil	ETQMRLSCNRDVFLLQGDLRAWEGADEVCHREWDLAIPRDFV*
Ga0126359_11452802	3300010869	Boreal Forest Soil	MRLSCTHDAFLLQASLRAWEGTSEVCHREWDHSIPRDLV*
Ga0137362_105809753	3300012205	Vadose Zone Soil	RLSCTRDVFRLQATLRAREGANEVSHREWDLSIPRDFM*
Ga0137381_104049783	3300012207	Vadose Zone Soil	SSTANAFLLQGGLRAWEGTNEVCHREWDRSIPRDFM*
Ga0137358_106710621	3300012582	Vadose Zone Soil	ETQLRLSSTGNAFLLQGSLRAWEGANEVCRRDWDRSIPRDFS*
Ga0137359_103465551	3300012923	Vadose Zone Soil	VRIETQMRLSCTREVFLLQASLRAWEGADEVCRRDWDRAIARDFL*
Ga0181524_103316001	3300014155	Bog	TQLRMSSTGNAFLLQGSMRAFEGANEVCRRDWDRSIPRDFS*
Ga0181518_105377802	3300014156	Bog	VETQLRLSSTGNAFLLQGSLGAWVGANEVFRRDWDRSIPRDFL*
Ga0163163_116574002	3300014325	Switchgrass Rhizosphere	WQIRVETLLRMSSTSNAFLLKGSLCAFDGDNEVCRRNWDRSIPRDFL*
Ga0182015_105403902	3300014495	Palsa	NEWQIRVETQLRLSCTASAFVLHGSLRAWEGANEMYGREWDRTIARDFL*
Ga0157377_111631211	3300014745	Miscanthus Rhizosphere	IRVETQMRLSCTRNDFLLQGSLRAWDGANEVCHREWDRSVPRDFL*
Ga0157376_123582632	3300014969	Miscanthus Rhizosphere	AWQIRIKAQMRLSCTRNAFLLRGSLRAWEGASEVCHRDWDRSIARDFL*
Ga0137403_113304111	3300015264	Vadose Zone Soil	ETQMRLSCTREVFLLQASLRAWEGANEVCRRDWDRAIARDFL*
Ga0182033_105264751	3300016319	Soil	IQLSSTRTDFRLRGDLRAWEGTDEVCGREWDRSIPRDFV
Ga0182032_103173112	3300016357	Soil	RVETQLRLSATGSDFRLQGSLHAWDGANEICRRDWDRSIPRDFS
Ga0182034_107664281	3300016371	Soil	MRLSCNRDAFLLHGRLRASEGANEVCHREWDRSIPRDFM
Ga0182040_100451222	3300016387	Soil	MSRDEWQIRIETQMRLSSSRDAFLLQGGLGACERANERCSRDWDRSIHRDFL
Ga0182040_107379911	3300016387	Soil	TQMRLSSTRNDFLLQGSLRAWEGASEVCHREWGRCIARDFM
Ga0182037_100234323	3300016404	Soil	MSRDEWQIRIETQMRLSSSRDAFLLQGGLRACERANELCSRDWDRSIHRDFL
Ga0187807_12269022	3300017926	Freshwater Sediment	NEWQIRVETQMRLSSTGNAFLLQGSLRAWEGANEVCRRNRDRSIPRDFM
Ga0187778_101620491	3300017961	Tropical Peatland	IRVETQMRLSSTGNAFLLQGSLRAWEGANEVCRRNRDRSIPRDFM
Ga0187783_102234075	3300017970	Tropical Peatland	RLSCTRNTFLLQGTLRAWEGGKEMCSREWNRTIARDFL
Ga0187782_106363371	3300017975	Tropical Peatland	RIETQLRLSSTANAFLLQGSLRAWEGADEVCRRDWDRSVPRDFL
Ga0187766_107577632	3300018058	Tropical Peatland	ETRIRLSCTREAFLLQAHLRAWEGASEVCHREWNRSIPRDFL
Ga0187784_108865071	3300018062	Tropical Peatland	TQMRLSSTDKAFLLQASLRAFEGANEVCRRDWDRSIPRDFM
Ga0187769_103176552	3300018086	Tropical Peatland	ATRDTFVLQGSFRAFEGANEVCHREWNRTIARDFL
Ga0193735_11507401	3300020006	Soil	VETRLRMSSTDNAFLLQGSLRAFEGSNEVCRRDWDRSIPRDFL
Ga0193753_101722632	3300020034	Soil	LSCTRDMFLLRASLRAWEGASEVCHREWDRSIPRDLS
Ga0210403_112350591	3300020580	Soil	SRLRGREWQIRIETQLRLSSTGNAFLLQGSLRAWEGTNEVCRRDWDRSIPRDFS
Ga0210399_106886231	3300020581	Soil	LSCTRDTFLLQASLHAFEGANEVCRRDWDRTIPRDFL
Ga0210380_104995012	3300021082	Groundwater Sediment	RLSCNRDVFLLQGDLRAWEGADEVCHREWDLAIPRDFV
Ga0210406_104366463	3300021168	Soil	QMRLSCTRDTFLLQASLRAWEGENEVCRRDWDRAIAREFL
Ga0210405_101103031	3300021171	Soil	IRVETQMRMSSTGNAFLLQGRLRAFEGDNEVCRRDWDRSIPRDFL
Ga0210385_112158051	3300021402	Soil	HMRLSSTGNAFLLQGSLRAFEGDNEVCRRDWDRSIPRDFL
Ga0210397_110445091	3300021403	Soil	LSSSRNAFLLQGSMRAFEGANEVCRRDWDRSIPRDFL
Ga0210389_106021723	3300021404	Soil	STAKAFLLQGSVRAFEGANEVCRRDWDRSIPRDFS
Ga0210386_102479795	3300021406	Soil	SVGNAFLLQATLRAWEGANEVCHRDWDRSIPRDFL
Ga0210383_108546732	3300021407	Soil	ETHMRLSSTGNAFLLQGSLRAFEGDNEVCRRDWDRSIPRDFL
Ga0210391_100917635	3300021433	Soil	QLRLSATANAFLLQGSLRAFEGANEVCRRDWDRSIPRDFS
Ga0210391_103961241	3300021433	Soil	RLSSTADAFLLQGSVRAFEGPNEVCRRDWDRSIPRDFS
Ga0210391_115219171	3300021433	Soil	THMRLSATGNAFQLQGSMRAFEGANEVCRRDWDRSIPRDFL
Ga0210398_115655771	3300021477	Soil	TQMRLSSTGNAFLLQGSLRAFEGANEVCRRDWDRSIPRDFS
Ga0210402_106830153	3300021478	Soil	QMRLSSTGNAFLLKGSLRAWEGANEVCRRDWDRSIPRDFS
Ga0210410_104508221	3300021479	Soil	MRLSCTREALVLRASLRAWEGTSEVCHREWDRSIPRDLV
Ga0212123_104207931	3300022557	Iron-Sulfur Acid Spring	RVRVETVMRLSCTKDAFLLQATLRAHEGANEVCNREWHHSIARDLM
Ga0207671_100403426	3300025914	Corn Rhizosphere	TQMRLSSTRDAFLLQASLRAFEGPNEVCRRDWDRTIPRDFL
Ga0207700_100376341	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	IETQMRLSCTRDVFLLQASLRAWEGGTEVCHRDWDRAIAREFL
Ga0257165_10580022	3300026507	Soil	MRLSCTREVFLLQASLRAWEGANEVCRRDWDRAIARDFL
Ga0208730_10047851	3300027047	Forest Soil	RMSSTGNAFLLQGSLRAWEGANEVCHRDWDRSIPRDFS
Ga0209734_10461251	3300027535	Forest Soil	SSTRNAFLLQGSMRAFEGANEVCRRDWDRSIPRDFL
Ga0209115_10481312	3300027567	Forest Soil	QMRLSSTGDNFLLQGSLRAFEGENEVCRRDWDRSIPRDFS
Ga0209330_10064501	3300027619	Forest Soil	LSATANAFLLQGSLRAFEGANEVCRRDWDRSIPRDFS
Ga0209117_10639021	3300027645	Forest Soil	QIRVETQMRLTSTRDTFLLQGSLRAWEAANEVCRRDWDRSIPRDFL
Ga0207826_10651361	3300027680	Tropical Forest Soil	SSMGNAFLLQGSLRAWEGTNEVCRRDWDRSIPRDFL
Ga0209626_10756691	3300027684	Forest Soil	RLSASRNAFLLQGSMRAFEGANEMCRRDWDRSIPRDFL
Ga0209773_101871451	3300027829	Bog Forest Soil	MRLTSTGSAFLLQGSFRAFEGTNEVCRRDWDRSIPRDFL
Ga0209167_105033041	3300027867	Surface Soil	WQIRVETQLRMSSTRDAFLLQGSLRAWDGANEVCRRDWERSVPRDFM
Ga0209006_105590141	3300027908	Forest Soil	WQIRVETQLRLSATGNTFLLQGSMRAFEGANEMCRRDWDRSIPRDFL
Ga0209526_103405841	3300028047	Forest Soil	QIRVETQLKLTATANAFLLQGSMRAFEGTNEVCRRDWDRSIPRDFL
Ga0268266_121648232	3300028379	Switchgrass Rhizosphere	RLTCTSEAFRLQAALRASEGATEVCHRDWDCTIARDLT
Ga0302219_100136791	3300028747	Palsa	SCTRNAFLLQGSLRAWEGANEMCHREWDRTIARDFL
Ga0265338_109706331	3300028800	Rhizosphere	SCTKDAFLLQTSLRAWEGPDVVCHREWNCSIPRDLM
Ga0307286_101160041	3300028876	Soil	STRDIFLLQGSLRAFEGANEVCRRDWDQSIPRDFL
Ga0311372_124575991	3300030520	Palsa	VGVETQLRMSCTGNAFLLQGSLRAWEGANELCSREWNRTIARDFL
Ga0265763_10007591	3300030763	Soil	LRMSCTADAFLLQGSLRAFEGANEVCRRDWDRSVPRDFL
Ga0318515_100407514	3300031572	Soil	CTRDVFLLLASLRAWEGDDEVCRRDWDRSIARDFL
Ga0310686_1077126571	3300031708	Soil	IRVETQMRRSATSNSFLLQGSLRAFEGENEVCRRDWDRTIPRDFA
Ga0307476_106350791	3300031715	Hardwood Forest Soil	MSSTGNAFLLQGSLRAWEGANEVCHRDWDRSIPRDFS
Ga0310813_103616112	3300031716	Soil	IETSTRLSCTREAFLLQASLRALEGPDEVCRRSWDCTIPRDCA
Ga0307468_1003164931	3300031740	Hardwood Forest Soil	RLSCTRDVFLLQASLRAWEGGTEVCHRDWDRAIAREFL
Ga0306918_111721321	3300031744	Soil	IRVETQLRLSCTHDAFLLQGSLRAWDGANEVCRRDWDRSIPRDFL
Ga0318492_100467743	3300031748	Soil	WHIRIETWMRLSCNRDVFLLQASLRAWDGANEVCRRDWDRAIARNFL
Ga0318535_104396431	3300031764	Soil	HIRIETWMRLSCNRDVFLLQASLRAWDGANEVCRRDWDRAIARNFL
Ga0318546_108621842	3300031771	Soil	LSCNRDVFRLQASLRAWEGANEVCRRDWDRAIARDFL
Ga0318546_109503811	3300031771	Soil	MSRDEWQIRIETQMRLSSSRDAFLLQGGLRACERANERCSRDWDRSVHRDFL
Ga0318529_101007363	3300031792	Soil	IRIETWMRLSCNRDVFLLQASLRAWDGANEVCRRDWDRAIARNFL
Ga0318548_100780542	3300031793	Soil	MSRDAWQVRIETQLRLSCNRDVFLLQASLRAWDEATEVCRRDWDLAIPRDFL
Ga0318550_105100961	3300031797	Soil	QIGVETQMRLSSTSNAFLLQGSLRAWEGANEVCHRDWDRSIPRDFL
Ga0302315_102919213	3300031837	Palsa	TQLRMSCTGNAFLLQGSLRAWEGANELCRREWNRTIARDFL
Ga0318511_104589682	3300031845	Soil	LRLTCNRDVFRLQASLRAWEGANEVCRRDWDRAIARDFL
Ga0306921_111920771	3300031912	Soil	CNRDVFRLQASLRAWEGANEVCRRDWDRAIARDFL
Ga0307479_112348551	3300031962	Hardwood Forest Soil	RLSSTANAFLLQGGLRAWEGANEVCHREWDRSIPRDFM
Ga0318531_102598001	3300031981	Soil	IRIETHLRLSCTGKAFLLQGSLRACEGVKEVCCREWDRTIARDFL
Ga0318531_103414013	3300031981	Soil	NWQIRIETQMRLSSTRNDFLLQGSLRAWEGASEVCHREWGRCIARDFM
Ga0318559_106178831	3300032039	Soil	MSRDEWQIRIETQMRLSSSRDAFLPQGGLRACERANELCSRDWDRSIHRDF
Ga0318506_105716792	3300032052	Soil	QLRLSCNRDVFRLQASLRAWEGANEVCRRDWDRAIARDFL
Ga0318540_103938861	3300032094	Soil	QMRLSSTRNDFLLQGSLRAWEGASEVCHREWGRCIARDFM
Ga0307472_1020938901	3300032205	Hardwood Forest Soil	MRLSCTREVFLLQASLRAWEGADEVCRRDWDRAIARDFL
Ga0335078_106543031	3300032805	Soil	MSSTRDAFLLHGSLRAWEGANEVIHRDWDRSIPRDFS
Ga0335078_127480301	3300032805	Soil	LSSTANAFLLQGSLRAFEGTNEVCRRDWDRSVARDFL
Ga0335073_107684193	3300033134	Soil	DAFLLQGSVRALEGANEVCRRDWDRSIPRDFSISI
Ga0310914_103555483	3300033289	Soil	MRLSCNRDVFLLQASLRAWDGANEVCRRDWDRAIARNFL
Ga0310914_113983481	3300033289	Soil	IRVETQLRMSSTGSAFLLHGSLRAFEGDNEVCRRDWDRSIPRDFL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters