Metagenome / Metatranscriptome Family F069086

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F069086
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	51 residues
Representative Sequence	MISLRLYTLALGIIGVALASYALLRRKPKNANDVELERRTWLNTVGRITD
Number of Associated Samples	110
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.00 %
% of genes near scaffold ends (potentially truncated)	99.19 %
% of genes from short scaffolds (< 2000 bps)	91.94 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.903 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (10.484 % of family members)
Environment Ontology (ENVO)	Unclassified (41.935 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.581 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.56% β-sheet: 0.00% Coil/Unstructured: 47.44%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF00903	Glyoxalase	6.45
PF01965	DJ-1_PfpI	5.65
PF06253	MTTB	5.65
PF01557	FAA_hydrolase	1.61
PF10996	Beta-Casp	0.81
PF01343	Peptidase_S49	0.81
PF03544	TonB_C	0.81
PF13701	DDE_Tnp_1_4	0.81
PF07722	Peptidase_C26	0.81
PF07508	Recombinase	0.81
PF02542	YgbB	0.81
PF00069	Pkinase	0.81
PF12706	Lactamase_B_2	0.81
PF13649	Methyltransf_25	0.81
PF13517	FG-GAP_3	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG5598	Trimethylamine:corrinoid methyltransferase	Coenzyme transport and metabolism [H]	5.65
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.23
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.61
COG0245	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	Lipid transport and metabolism [I]	0.81
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.81
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.90 %
Unclassified	root	N/A	37.10 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.90 %
Unclassified	root	N/A	37.10 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.90 %
Unclassified	root	N/A	37.10 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	43.55 %
Unclassified	root	N/A	37.10 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	3.23 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.10 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	29.03 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	10.48 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3.23 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.10 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.03 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	9.68 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3.23 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.10 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.03 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9.68 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3.23 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.10 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.03 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3.23 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.61 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.81 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	0.81 %
Acidisarcina	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.10 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.03 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3.23 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.61 %
Acidobacteriaceae bacterium KBS 89	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	0.81 %
Acidisarcina polymorpha	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	0.81 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10130406	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	997	Open in IMG/M
3300001151\|JGI12713J13577_1007198	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300001356\|JGI12269J14319_10303413	Not Available	575	Open in IMG/M
3300001593\|JGI12635J15846_10576572	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	656	Open in IMG/M
3300003505\|JGIcombinedJ51221_10246788	Not Available	725	Open in IMG/M
3300004091\|Ga0062387_100062613	Not Available	1843	Open in IMG/M
3300004152\|Ga0062386_100933085	Not Available	718	Open in IMG/M
3300004152\|Ga0062386_101771104	Not Available	515	Open in IMG/M
3300005176\|Ga0066679_10026369	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	3152	Open in IMG/M
3300005437\|Ga0070710_11230643	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	554	Open in IMG/M
3300005598\|Ga0066706_11400792	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300005602\|Ga0070762_10122080	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1532	Open in IMG/M
3300006052\|Ga0075029_100947474	Not Available	592	Open in IMG/M
3300006176\|Ga0070765_100712160	Not Available	948	Open in IMG/M
3300007788\|Ga0099795_10347499	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	663	Open in IMG/M
3300009088\|Ga0099830_11755223	Not Available	518	Open in IMG/M
3300009518\|Ga0116128_1103859	Not Available	837	Open in IMG/M
3300009521\|Ga0116222_1415989	Not Available	585	Open in IMG/M
3300009524\|Ga0116225_1569469	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300009632\|Ga0116102_1139963	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	671	Open in IMG/M
3300009632\|Ga0116102_1161485	Not Available	613	Open in IMG/M
3300009643\|Ga0116110_1100122	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	986	Open in IMG/M
3300009672\|Ga0116215_1385336	Not Available	607	Open in IMG/M
3300009698\|Ga0116216_10024325	All Organisms → cellular organisms → Bacteria	3788	Open in IMG/M
3300009698\|Ga0116216_10318941	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300009700\|Ga0116217_10942334	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300009700\|Ga0116217_10992395	Not Available	514	Open in IMG/M
3300009764\|Ga0116134_1333998	Not Available	520	Open in IMG/M
3300010048\|Ga0126373_11131759	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	849	Open in IMG/M
3300010341\|Ga0074045_10028951	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4211	Open in IMG/M
3300010343\|Ga0074044_10602899	Not Available	717	Open in IMG/M
3300010343\|Ga0074044_10604455	Not Available	716	Open in IMG/M
3300010343\|Ga0074044_10795302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	618	Open in IMG/M
3300010361\|Ga0126378_11764083	Not Available	704	Open in IMG/M
3300010379\|Ga0136449_104314471	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300011270\|Ga0137391_11578784	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300012189\|Ga0137388_10640236	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	988	Open in IMG/M
3300012202\|Ga0137363_10548341	Not Available	974	Open in IMG/M
3300012582\|Ga0137358_10194467	Not Available	1384	Open in IMG/M
3300012685\|Ga0137397_10185662	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1545	Open in IMG/M
3300012927\|Ga0137416_10996977	Not Available	748	Open in IMG/M
3300014155\|Ga0181524_10342824	Not Available	667	Open in IMG/M
3300014156\|Ga0181518_10333311	Not Available	747	Open in IMG/M
3300014158\|Ga0181521_10257879	Not Available	917	Open in IMG/M
3300014159\|Ga0181530_10477395	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	624	Open in IMG/M
3300014491\|Ga0182014_10298126	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300014654\|Ga0181525_10097834	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1625	Open in IMG/M
3300014839\|Ga0182027_11310830	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	722	Open in IMG/M
3300015193\|Ga0167668_1030479	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1190	Open in IMG/M
3300015241\|Ga0137418_10388879	All Organisms → cellular organisms → Bacteria → Acidobacteria	1141	Open in IMG/M
3300017823\|Ga0187818_10292569	Not Available	715	Open in IMG/M
3300017823\|Ga0187818_10538526	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300017932\|Ga0187814_10202733	Not Available	746	Open in IMG/M
3300017943\|Ga0187819_10421254	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	766	Open in IMG/M
3300017943\|Ga0187819_10723259	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561	Open in IMG/M
3300017955\|Ga0187817_10088389	All Organisms → cellular organisms → Bacteria → Acidobacteria	1942	Open in IMG/M
3300017955\|Ga0187817_10333579	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	967	Open in IMG/M
3300017970\|Ga0187783_10068369	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2616	Open in IMG/M
3300017998\|Ga0187870_1153823	Not Available	839	Open in IMG/M
3300018008\|Ga0187888_1351844	Not Available	560	Open in IMG/M
3300018012\|Ga0187810_10176361	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	864	Open in IMG/M
3300018016\|Ga0187880_1054035	Not Available	2131	Open in IMG/M
3300018016\|Ga0187880_1319706	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300018016\|Ga0187880_1403786	Not Available	571	Open in IMG/M
3300018020\|Ga0187861_10489225	Not Available	506	Open in IMG/M
3300018024\|Ga0187881_10156976	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300018034\|Ga0187863_10172738	All Organisms → cellular organisms → Bacteria → Acidobacteria	1205	Open in IMG/M
3300018042\|Ga0187871_10159509	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1272	Open in IMG/M
3300018042\|Ga0187871_10536284	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300018047\|Ga0187859_10545483	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	649	Open in IMG/M
3300018062\|Ga0187784_11532957	Not Available	528	Open in IMG/M
3300018062\|Ga0187784_11573149	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300018085\|Ga0187772_11418004	Not Available	516	Open in IMG/M
3300018086\|Ga0187769_11081402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	607	Open in IMG/M
3300018088\|Ga0187771_10362283	Not Available	1220	Open in IMG/M
3300019082\|Ga0187852_1434531	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300020579\|Ga0210407_11019766	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	630	Open in IMG/M
3300020580\|Ga0210403_11082278	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	623	Open in IMG/M
3300021180\|Ga0210396_10501681	Not Available	1062	Open in IMG/M
3300021405\|Ga0210387_10932552	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	763	Open in IMG/M
3300021407\|Ga0210383_10755076	Not Available	834	Open in IMG/M
3300021474\|Ga0210390_10971949	Not Available	695	Open in IMG/M
3300022515\|Ga0224546_1003405	Not Available	975	Open in IMG/M
3300024238\|Ga0224523_1113891	Not Available	618	Open in IMG/M
3300025404\|Ga0208936_1049345	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300025419\|Ga0208036_1072654	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300025441\|Ga0208456_1082356	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300025453\|Ga0208455_1026806	All Organisms → cellular organisms → Bacteria	1345	Open in IMG/M
3300025459\|Ga0208689_1086051	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300025473\|Ga0208190_1112442	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300025915\|Ga0207693_10981926	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300026318\|Ga0209471_1130005	Not Available	1063	Open in IMG/M
3300026551\|Ga0209648_10663233	Not Available	570	Open in IMG/M
3300026552\|Ga0209577_10205277	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1511	Open in IMG/M
3300027110\|Ga0208488_1054751	Not Available	684	Open in IMG/M
3300027575\|Ga0209525_1013418	All Organisms → cellular organisms → Bacteria → Acidobacteria	1979	Open in IMG/M
3300027648\|Ga0209420_1064810	All Organisms → cellular organisms → Bacteria	1073	Open in IMG/M
3300027729\|Ga0209248_10105194	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha	850	Open in IMG/M
3300027825\|Ga0209039_10111341	Not Available	1165	Open in IMG/M
3300027884\|Ga0209275_10044976	All Organisms → cellular organisms → Bacteria → Acidobacteria	2099	Open in IMG/M
3300027905\|Ga0209415_10813101	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	649	Open in IMG/M
3300027908\|Ga0209006_10271963	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1453	Open in IMG/M
3300028665\|Ga0302160_10092421	Not Available	658	Open in IMG/M
3300028775\|Ga0302231_10100520	All Organisms → cellular organisms → Bacteria	1207	Open in IMG/M
3300029889\|Ga0246001_1006856	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	4434	Open in IMG/M
3300030007\|Ga0311338_11314565	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300030053\|Ga0302177_10161481	All Organisms → cellular organisms → Bacteria	1256	Open in IMG/M
3300030054\|Ga0302182_10058433	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1736	Open in IMG/M
3300030509\|Ga0302183_10237652	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300030524\|Ga0311357_10629093	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	984	Open in IMG/M
3300030815\|Ga0265746_1020988	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	795	Open in IMG/M
3300031258\|Ga0302318_10249780	Not Available	869	Open in IMG/M
3300031344\|Ga0265316_10054133	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3142	Open in IMG/M
3300031708\|Ga0310686_100158518	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3259	Open in IMG/M
3300031715\|Ga0307476_10839025	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	679	Open in IMG/M
3300031753\|Ga0307477_10144365	All Organisms → cellular organisms → Bacteria	1660	Open in IMG/M
3300031820\|Ga0307473_10045273	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2041	Open in IMG/M
3300032160\|Ga0311301_11309813	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300032160\|Ga0311301_11755454	Not Available	742	Open in IMG/M
3300033402\|Ga0326728_10308002	All Organisms → cellular organisms → Bacteria	1437	Open in IMG/M
3300033475\|Ga0310811_11243044	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300033820\|Ga0334817_080530	Not Available	628	Open in IMG/M
3300033983\|Ga0371488_0349902	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	695	Open in IMG/M
3300034124\|Ga0370483_0148455	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.19%
Host-Associated	Host-Associated	0.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.32%
Aquatic	Environmental → Aquatic	33.87%
Plants	Host-Associated → Plants	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.03%
Freshwater	Environmental → Aquatic → Freshwater	33.06%
Peat	Environmental → Terrestrial → Peat	11.29%
Sediment	Environmental → Aquatic → Sediment	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.87%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	33.06%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	11.29%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.48%
Loam	Environmental → Terrestrial → Soil → Loam	9.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.58%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	17.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	11.29%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	8.87%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.06%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.26%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	6.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.03%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	10.48%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	9.68%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	8.87%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.26%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	6.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.84%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.84%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.84%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.03%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	4.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.23%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	3.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.42%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.42%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.42%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	2.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.61%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.61%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.81%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.81%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.81%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.81%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.81%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.81%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.81%
Peat	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001151	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015193	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017998	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300022515	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 1-5	Environmental	Open in IMG/M
3300024238	Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T50	Environmental	Open in IMG/M
3300025404	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10 (SPAdes)	Environmental	Open in IMG/M
3300025419	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100 (SPAdes)	Environmental	Open in IMG/M
3300025441	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100 (SPAdes)	Environmental	Open in IMG/M
3300025453	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40 (SPAdes)	Environmental	Open in IMG/M
3300025459	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150 (SPAdes)	Environmental	Open in IMG/M
3300025473	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10 (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027110	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001 (SPAdes)	Environmental	Open in IMG/M
3300027575	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028665	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_3	Environmental	Open in IMG/M
3300028775	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2	Environmental	Open in IMG/M
3300029889	Peat microbial communities from Marcell Experimental Forest bog in Minnesota, USA - MG_T3F_30cm	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030815	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031258	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1	Environmental	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033820	Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-D	Environmental	Open in IMG/M
3300033983	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fraction	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_101304061	3300000567	Peatlands Soil	MISLRLYTLVLGIIGLAVVSYALLRRKPKTADDVELRRRTWLNTV
JGI12713J13577_10071983	3300001151	Forest Soil	MISLRLYTLALGTIALALAGYALLRRKPVSADDVERQRRGWLNTVGRITDGTVIDVQEIVTALGRPATMLI
JGI12269J14319_103034132	3300001356	Peatlands Soil	MISLRLYTIVLAAIGLAIAGYALLRRKSKSADDVERER
JGI12635J15846_105765721	3300001593	Forest Soil	MISLRLYTLALGALGLALASYALLRRKPKTADDVERERRAWLSTVGR
JGIcombinedJ51221_102467882	3300003505	Forest Soil	MISLRLYTVALGAIGVCLAAYALLYRRNKKAPDVELERRTWLNTVGRITDGTVID
Ga0062387_1000626132	3300004091	Bog Forest Soil	MISLRLYTLVLGIIGLAVVSYALLRRKPKTADDVEFGRRTWLNT
Ga0062386_1009330852	3300004152	Bog Forest Soil	MISLRLYTLALGTIGVGLASYALLRRKPKNAKDIELERRTWLNTVGRITDGTV
Ga0062386_1017711041	3300004152	Bog Forest Soil	MISLRLYTLVLGAIGLALAGYALLRRKSKNADDVERERRTWLN
Ga0066679_100263691	3300005176	Soil	MISLRLYTIALCTIGLGLASYAMLRRKPKNADQIELERRTWLNTIGRITDGTVIDVQEIT
Ga0070710_112306432	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MISLRLYTIALGTVGLGLASYAMLRRKPKNADQIELERRTWLNTIGRITDGTVID
Ga0066706_114007922	3300005598	Soil	MISLRLYTLALAAIGLAVAGYALLRRKSRTADDIERERRTWLSTVGRI
Ga0070762_101220802	3300005602	Soil	MISLRFYTLALAAVGLALAGYALFRRKPKTADDIELERRTWLNTVGRITDGTVIDV
Ga0075029_1009474741	3300006052	Watersheds	MISLRFYTLALGAIGLAAASYALLRRKSKAADDLERERRTWLN
Ga0070765_1007121602	3300006176	Soil	MISLRLYTLALSAIGLALAAYSLLRRKTKTADDIERERRTWL
Ga0099795_103474991	3300007788	Vadose Zone Soil	MISLRLYTLTLAAIGLAVTGYALLRRKSKTADDVERERRAWLSTVGRITDGTVIDVQEIALDT
Ga0099830_117552231	3300009088	Vadose Zone Soil	MISLRLYSLALGAIGLALAGYALLRRKSKTADDVERERRAWLNTV
Ga0116128_11038592	3300009518	Peatland	MISLRLYTLVLGTIGVALASYALLRRKPRNANEVELERRTWLNTVGRITDGTVIDVQE
Ga0116222_14159891	3300009521	Peatlands Soil	VLSTLGLALAGYSLLRRKPRNVDDLEHQRRTWLNTVGRITDGTVI
Ga0116225_15694691	3300009524	Peatlands Soil	MISLRLYTLVLGMIGLAAASYALLRPKSKNPVDVEHERRTWLNTVGRITDGTVIDVQEIA
Ga0116102_11399631	3300009632	Peatland	MISLRIYTLALVTIGVAVASYALLRRKPKPANAAELERRTWLNTVGRITDGTVIDVQEITTA
Ga0116102_11614852	3300009632	Peatland	MISLRIYTLALVTIGVAVASYALLRRKPKLANAAEL
Ga0116110_11001221	3300009643	Peatland	MISLRIYTLALVTIGVAVASYALLRRKPKPANAVELERRTWLNTVGRITDGTVIDVQEI
Ga0116215_13853361	3300009672	Peatlands Soil	MISLRLYTLVLGTIGLAAASYALLRRKPKNAHDVEHERR
Ga0116216_100243251	3300009698	Peatlands Soil	MTSLRLYTLALVTIGVAVASYALLRRKPKPANEVELERR
Ga0116216_103189411	3300009698	Peatlands Soil	MISLRIYTLALVTIGVAVASYALLRRKPKPANAAELERRTWLNTVGRITDGTVIDVQEITTAADRPATML
Ga0116217_109423342	3300009700	Peatlands Soil	MISLRLYTLVLGMIGLAAASYALLRPKSKNPVDVEHERRTWLNTVGRITDGTVIDVQEIAMDTNR
Ga0116217_109923951	3300009700	Peatlands Soil	MISLRLYTLALGAIGLAVASYALLRRKPKTASEVEHERRTWLNTV
Ga0116134_13339981	3300009764	Peatland	MISLRLYTLALVTIGVAVASYALLRRKPKLANAAELERRTWLNLVG
Ga0126373_111317591	3300010048	Tropical Forest Soil	MISVRLYMIALGVIGVALASWAFLRRKPKSAEDLERERRTWLNGVGR
Ga0074045_100289517	3300010341	Bog Forest Soil	MISLRLYTLVLGIIGLAVVSYALLRRKAKTADDVEFGRRTWLNTVGRITDGTVIDVQEITTKVNRP
Ga0074044_106028992	3300010343	Bog Forest Soil	MISLRLYILALVTIGVAVASYALLRRKPKLANAAELERRTWLNTVGRITDGTVIDV
Ga0074044_106044552	3300010343	Bog Forest Soil	MISLRIYTLALVTIGVAVASYALLRRKPKLANAAELERRTWLNTVGRITDGTVIDV
Ga0074044_107953021	3300010343	Bog Forest Soil	MISLRLYTLVLGAIGLAVAGYALLRRKPKNADDVERERRTWLNTV
Ga0126378_117640831	3300010361	Tropical Forest Soil	MISLRLYTLGLAALGVVMASYALLRRKPKSPDDVERERRTWLNQV
Ga0136449_1043144711	3300010379	Peatlands Soil	MISLRLYTLALVTIGVAVASYALLRRKPKLANAAELERRTWLNTVGRITDGTVIDVQEITTAADRPATMLIYQ
Ga0137391_115787841	3300011270	Vadose Zone Soil	MISLRLYTFVLGTIGLAVAGYALLRRKSKNADEVELARRTWLNTVGRITDGTVIDVQEIT
Ga0137388_106402362	3300012189	Vadose Zone Soil	MWIERLGFRLPMISLRLYTFVLGTIGLAVAGYALLRRKSKNADEVELVRRTWLNTVGRITDG
Ga0137363_105483412	3300012202	Vadose Zone Soil	MISLRLYTLVLGAIGLALASYALLRRKSKTADDIERERRAWLNTVGRITD
Ga0137358_101944671	3300012582	Vadose Zone Soil	MISLRLFTLALGTIGLVIAGYALLRRKSKNADEVELERRT
Ga0137397_101856621	3300012685	Vadose Zone Soil	MISLRLYTLALGAIGLAVASYALLRRKSKTADDVERERRAWLNTVG
Ga0137416_109969771	3300012927	Vadose Zone Soil	MISLRLYTLVLGAIALAVAGYALLRRKSKTADDVERERRAWL
Ga0181524_103428242	3300014155	Bog	MISLRLYMVALGTIGVGVASYALLRRKPKPANEAELERRTWLNTVGRITDG
Ga0181518_103333112	3300014156	Bog	MTSFRLYTLALVTIGVAVASYALLRRKPKLANAAELERRTWLNTVGRITDGTVIDV
Ga0181521_102578791	3300014158	Bog	MTSFRLYTLALVTIGVAVASYALLRRKPKLANAAELERRTWLNTVGRIT
Ga0181530_104773952	3300014159	Bog	MISLRIYTLALVTIGVAVASYALLRRKPKLANAAELERRTWLNTVGRITDGTVIDVQEITTA
Ga0182014_102981261	3300014491	Bog	MITLRLYTFVLCAAGVALAGYALLRRKPKTAEEVELERRTWLNTIGRITDGTVIDVQEL
Ga0181525_100978341	3300014654	Bog	VISLRLYIFALSTIGLALVGYSLLRRKPKKADDIERERRTW
Ga0182027_113108301	3300014839	Fen	MISLRLYTLALGTAGVGLATYALLRRKPKNANDVEFERRTWLNTVGRITDGTVIDVQEITMATN
Ga0167668_10304792	3300015193	Glacier Forefield Soil	MISLRLYTIVLGAIGLALACYAMLRRKPKNADQIELERR
Ga0137418_103888791	3300015241	Vadose Zone Soil	MISLRLYTLTLAAIGLAVAGYALLRRKSKTADDIERERRAWLSTVG
Ga0187818_102925691	3300017823	Freshwater Sediment	MISLRLYTLALGAIGLAAASYALLHRKPKTASDVERERRTWLN
Ga0187818_105385261	3300017823	Freshwater Sediment	MISLRLYILALVTIGVAVASYALLRRKPKHANDVELERRTWLNTVGRITDGTVIDVQEIT
Ga0187814_102027332	3300017932	Freshwater Sediment	MIPFRVYTIALGAVGLAVSGYALLRRKPKTSDQVEQE
Ga0187819_104212541	3300017943	Freshwater Sediment	MISIRLYGLALGAIGLAVGSYTFLRRKPKTPDELERERRT
Ga0187819_107232592	3300017943	Freshwater Sediment	MISLRLYTLVLGIIGLAVVSYALLRRKPKTADDVERRRRTWLNT
Ga0187817_100883892	3300017955	Freshwater Sediment	MISLRLYTLVLSGIGLAFAGYALLRRKPKTAEDLERERRVWLSTIGRITDGTVIDVQEIE
Ga0187817_103335791	3300017955	Freshwater Sediment	MISIRLYGLALGAIGLAVGGYAFLRRRPKTPEELERERRTWLNQVGRITDCRV
Ga0187783_100683695	3300017970	Tropical Peatland	MITLRLYGAVLSAAGLAFAAYAMVRRKPKKAEDVERERRTWLN
Ga0187870_11538232	3300017998	Peatland	MISLRLYTLALGIIGVALASYALLRRKPKNANDVELERRTWLNTVGRIT
Ga0187888_13518441	3300018008	Peatland	MISLRLYTLALGIIGVALASYALLRRKPKNANDVELERRTWLNT
Ga0187810_101763611	3300018012	Freshwater Sediment	MISLRLYTLALGTIVVAIASYALLRRRSKTADDVERERRNWLNTV
Ga0187880_10540354	3300018016	Peatland	MISLRLYTLALGTIGVGLASYALLRRKPKNAKDVELERRTWLNTVGRI
Ga0187880_13197061	3300018016	Peatland	MISLRLYMLALVTIGLAAASYALLRRKPKSANEVELE
Ga0187880_14037862	3300018016	Peatland	MTSLRLYTLALVTIGVAVASYALLRRKPKPANAAELERRTWLNTVGRITDGTV
Ga0187861_104892251	3300018020	Peatland	MISLRLYTLALGTIGVGLASYALLRRKPKNANDVELERRTWLNTVGRITDGT
Ga0187881_101569762	3300018024	Peatland	MISLRLYTLALVTIGVAVASYALLRRKPKPANAAELERRTWLNTVGRITDGTVIDVQEITTAADRPAT
Ga0187863_101727381	3300018034	Peatland	MISLRLYTLILGGIGLSFAGYALLRRKPKTAEELERERRVWLSSIGRIT
Ga0187871_101595091	3300018042	Peatland	MISLRFYTLALGTAGVVLASYALLRRKPKHAKDIEFERRTWLNTVG
Ga0187871_105362841	3300018042	Peatland	MISLRLYTLALGTIGVALASYALLRRKPKNPDEIECERRTWLNSTGRITDGTVIDVQEI
Ga0187859_105454832	3300018047	Peatland	MISLRLYTLALGTLGVALASYALLRRKPKHAKDVELDRRTWLNTVGRITDGTVIDVQEIT
Ga0187784_115329571	3300018062	Tropical Peatland	MIPLRIYTFAVCAVGVAFAGYALLRRRKPKTAEELERERRTWLSEVGRITDGT
Ga0187784_115731491	3300018062	Tropical Peatland	MISLRLYTLALGTMIVAVASYALLRREPKSADDMERDRRSWLSLVGRITDGTVIDVQEITVDENRPAT
Ga0187772_114180042	3300018085	Tropical Peatland	MISLRLYIFALATIGLSLASYALFRRRPKSADELERERRSWLN
Ga0187769_110814021	3300018086	Tropical Peatland	MISLRLYTLALGTIGVALASYAVLRRKPKNANDVE
Ga0187771_103622832	3300018088	Tropical Peatland	MISLRLYMFGLSAVGLAFAGYALLRRKPKTAGELERERREWLN
Ga0187852_14345312	3300019082	Peatland	MISLRIYTLALVTIGVAVASYALLRRKPKPANAAELERRTWLNTVGRITDGTVIDVQEITMDTNRP
Ga0210407_110197661	3300020579	Soil	MISLRLYTLVLGAIALALAGYALLRRKSKTADDVERERRAWLNTVGRITD
Ga0210403_110822782	3300020580	Soil	MISLRLYGLVTGGVALLATYALLRRKSKTADELERER
Ga0210396_105016811	3300021180	Soil	MISLRLYTLILAGAGLAFGGYALLRRKPKTADDIERDRRVWLNTIGRIT
Ga0210387_109325521	3300021405	Soil	MISLRLYSLALGAIGLALASYALLRPKPKTSDDVERERRAWLNTVG
Ga0210383_107550761	3300021407	Soil	MISLRLYTFALSAIGLALAGYAFLRRKPKTADDIELERR
Ga0210390_109719491	3300021474	Soil	MISLRLYTLILAGAGLAFGGYALLRRKPKTADDIERDRRVWL
Ga0224546_10034052	3300022515	Soil	MISLRLYTLALVAIGVCLAAFALLRRRKKAPDVELERRTWLNTV
Ga0224523_11138911	3300024238	Soil	MISLRFYTVVLGAIGVAVASYGLLRRKPKNANDVELERRTWLNTVGRITDG
Ga0208936_10493451	3300025404	Peatland	MNSLRIYTLGLGMAGIALASYAMFRRKPKNAIEIEHERRVWLNTVGRITDGTVIDVQEIT
Ga0208036_10726542	3300025419	Peatland	MISLRLYTLALGTGGLAAASYALLRRKPKNADEVEC
Ga0208456_10823561	3300025441	Peatland	MISLRLYTLALGTGGLAAASYALLRRKPKNADEVECER
Ga0208455_10268062	3300025453	Peatland	MISLRIYTLALVTIGVAVASYALLRRKPKPANAAELERRTWLNTVGRITDGTVIDVQEITTAADRPAT
Ga0208689_10860511	3300025459	Peatland	MISLRLYTLVLAAIGLAIAAYALLRRKSKSADDVERERRAWLNTVG
Ga0208190_11124421	3300025473	Peatland	MISLRLYTLALGTVGVALASYALLRRKPKHAKDVELDRRTWLNTVGRITDGTVIDVQEI
Ga0207693_109819261	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MISLRLYTIALGTVGLGLASYAMLRRKPKNADQIELERRTWLNTIGRITDGTVIDVQE
Ga0209471_11300051	3300026318	Soil	MEIERLGFHLQMISLRLYTLALAAIGLAVAGYALLRRKSKTADDIERERRAWLSTVGRI
Ga0209648_106632332	3300026551	Grasslands Soil	MISLRLYALVLGMVGLAVAGYALLRRKSKSADEVEL
Ga0209577_102052773	3300026552	Soil	MISLRLYTIALCTIGLGLASYAMLRRKPKNADQIELERRTWLNTIGRITDG
Ga0208488_10547512	3300027110	Forest Soil	MISPAQYALALGAIGVGLASYALLHRKSKTADDIE
Ga0209525_10134185	3300027575	Forest Soil	MISLRLYTLALGTIALALAGYALLRRKPVSADDVERQRRGWLNTVGRITDGTVIDVQEIVTALGRPATMLIY
Ga0209420_10648103	3300027648	Forest Soil	MISLRLYSLALGMIAVALAGYALLRRKPVSADDVERQRRGWLNTVG
Ga0209248_101051943	3300027729	Bog Forest Soil	MISLRVYTFALAAAGVGVASYALMRRKPKTLDDIELDRRNWLNTVGRITDGTVIDVQEITTALNRPATMLILAMPAPGS
Ga0209039_101113411	3300027825	Bog Forest Soil	MISLRLYTLALGTIGVGLASYALLRRKPKNAKDIE
Ga0209275_100449761	3300027884	Soil	MISPAQYAFALGAIGVGLASYALLHRKSKTADDIELERRTWLNTIGRITDGTVIDVQEITMATN
Ga0209415_108131012	3300027905	Peatlands Soil	MISLRLYTLALVTIGVAVASYALLRRKPKLANAAELERRTWLNTVGRITDGTVIDVQEITTAADRPATM
Ga0209006_102719631	3300027908	Forest Soil	MISLRLYTLALCAIGLAAAGYALVRRKPQNANDVERVRRTWLNTVGRITDGTVIDVQEV
Ga0302160_100924211	3300028665	Fen	MIPLRMYMLAVSGIGVAFAGYALLRRKPKTADEIERDRRQWLN
Ga0302231_101005202	3300028775	Palsa	MISLRLYTLALVAIGVCLAAFALLRRRKKAPDVELERRTWLNTVGRITDGTVIDVQEIMTALGRPATML
Ga0246001_10068567	3300029889	Peat	MISLRLYTLALGIIGVALASYALLRRKPKNANDVELERRTWLNTVGRITD
Ga0311338_113145651	3300030007	Palsa	MISLRLYTVVLGAIGLAFASYALLRRKPRNADDLERDRRDWLNMVGRITDGTVIDVQEIT
Ga0302177_101614812	3300030053	Palsa	MISLRLYTLALVAIGVCLAAFALLRRRKKAPDVELERRTWLNTVGRITDGTV
Ga0302182_100584331	3300030054	Palsa	MISLRLYTFALCTIGLALAGYALVRRKPKNAKDVERERRNWLN
Ga0302183_102376521	3300030509	Palsa	MISLRLYTFALCTIGLALAGYALVRRKPKNAKDVERERRNWLNSVGRI
Ga0311357_106290932	3300030524	Palsa	MISLRLYTVVLGTIGLAFAGFALLRRKPRNAEDVEHE
Ga0265746_10209881	3300030815	Soil	MISLGHYTLVLGTIGIGLASYALLRRKPRGADEVELERRTWLNTVGRITDGTVIDVQ
Ga0302318_102497802	3300031258	Bog	MNSLRIYTLGLGMAGIALASYAMFRRKPKNAIEIEHERRVWLNTVGRITDGTV
Ga0265316_100541331	3300031344	Rhizosphere	MISLRLYTLALSGVGLAYAGYALLRRKPKTAEDMERERRTWLNTVGRITDGTVIDV
Ga0310686_1001585185	3300031708	Soil	MISLRLYTILLGAIGVAFASYALLRRKPKNADDLERQRRDWLNTVGRITDGTVI
Ga0307476_108390251	3300031715	Hardwood Forest Soil	MISLRVYTFALAAAGVGVVSYALMRRKPKTADDIEFDRRNWLNTVGRITDGTVIDVQEIT
Ga0307477_101443651	3300031753	Hardwood Forest Soil	MISLRLYTIALGTVGLGLASYAILRRKPKNADQIELERRTWLNTIGRI
Ga0307473_100452731	3300031820	Hardwood Forest Soil	MVDPIRLYSLILGGAGLALGGYALLRRRSKSSEELERVRREWLNKIGRITDGTVVDVQEI
Ga0311301_113098132	3300032160	Peatlands Soil	MISLRIYTLALVTIGVAVASYALLRRKPKPANAAELERRTWLNTVGRITDGTVIDVQEITTAADCPATML
Ga0311301_117554542	3300032160	Peatlands Soil	MISLRLYTLALVTIGVAVASYALLRRKPKLANAAELERRTWLNTVGRITDGTV
Ga0326728_103080021	3300033402	Peat Soil	MISLRLYTLALGTIGVGLASYALLRRKPKNAKDVELERRTWLNTVGRITDG
Ga0310811_112430441	3300033475	Soil	MISLRLYTFLIGGITIALAGYALLRRKPKTAADIERERRDLLGNIG
Ga0334817_080530_508_627	3300033820	Soil	MISLRLYTLALGTIGIALASYALLRRKPRNANDVELERRT
Ga0371488_0349902_1_141	3300033983	Peat Soil	LETISLRLYIFALVTIGLIMAGYALLRRKPKTADEIERERRDWLNSV
Ga0370483_0148455_1_168	3300034124	Untreated Peat Soil	MISFRFYTLALGTIGVALGSYALLHRKPRNPTDLEFERRTWLNTVGRITDGTVIDV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069086

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences